>SEQF1778_EEI64513.1 low molecular weight phosphotyrosine protein phosphatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVIFVCLGNICRSPMAEAMFKKMVAEAGLADQITIGSAGTSNIAEGSPADSRTKAILDKYHIKDDGMIARQLQDRDYYD
ADYIIAMDQMNVRDAKDMAPAGLENKVHGIFKATPGKENCYIVDPWITHRFQDTYDSLSEALPNWLAKLKKEIK
>SEQF1778_EEI64514.1 benzyl alcohol dehydrogenase AreB domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGATETINNTAEDPVKAIKEIVPRGVTYAIDTTGNTGVIKSAIDSLATAGECVLLGVCGDITLNLMNDILSESKKISGVV
EGDSNPQEFIPQLVKYYKQGKFPLDKLVKYYDFADINQVIADSTNGKVIKPIIKIDPELAK
>SEQF1778_EEI64515.1 hypothetical protein HMPREF0534_2157 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPKVYQQHPELFGNPRSSVFPLLTKILDANASLSIQVHPDDAYAEEHEHELGKTECWYVIHAEPGAYLTYGHTAKTRDEL
IKMIDNHQWSKLFSRKPVKTGDFVYVPSGTIHALNKGIIVLETQQSSDTTYRIYDYDRRDKKQVSYASFI
>SEQF1778_EEI64516.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDLDIQPVRLSLKEYKQVKQLYMRAFPKYEREPWTWLLIKSKYQRADFMAFYDQEQFVGFAYVIHSHGMHYILYLAVNDQ
IRSQGYGTRIINELRRLYPEDSLALDVEQPNPQAANNQQRLRRLKFYRRNGFFPTPKLFKEEKVTFQVLATNKKINQRKI
DKAFEWFSWPLGWLIQ
>SEQF1778_EEI64517.1 hypothetical protein HMPREF0534_2159 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKIIALTRQQREDILQQLRPDQVQALSEFTRYAMLSRFHTHHYLKQTDWEFQGMVIDPWYQRQHDHPGDNLYCDCGRRL
KNQFILRSRTTGRQLFLGISHFQQHASIPHKVAREIQAGINEINLYMDSILLAYQAGRRFPKKIFQFVVAQQGFKNHEGT
ILYQRCNLFSQVDLPLHQRDYQDLQTLYHQLKQGVTHRLTKEEITQLRDDIATDWRQVDQQITMFNYLLRQHGLTVQDLH
RIKSNSINYALQRRKTRFMIHDYKQFKDVTLTKARSQLAIKLRQLSFYLQIFQPNELAKVQCEQAQQILIAHKMSSPKSH
FFGIKEAQILLKSKYTI
>SEQF1778_EEI64518.1 hypothetical protein HMPREF0534_2160 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMNQEANHGITYSLSFLRNADYSKVLFWLGIKPLDFDDLHELLTNISNNQSITIIEELQTKYLISPIKEAGCFVLTTGGQ
EIARLIMSLGVWGRQQMDENGGNNSVQVVLPRFFHGAKRTIKVSKHG
>SEQF1778_EEI64519.1 hypothetical protein HMPREF0534_2161 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVNPTWNYYKAKVKDTLSSDEGKAIYRRRMSDVEPVFGHMKRDFGIPRTHLSGQRAVENDIGLALMALNLTKFGQSISR
LKTNFITNLKSELRFLDRSKIIVRILLLENQELIVNSQPRFISVINLIYLSSV
>SEQF1778_EEI64520.1 hypothetical protein HMPREF0534_2162 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEDPMMNRELKPGYNLQIATHKQFVLDYGLFSNPTDTRTLVPFLTQFHALDFFEHIVADAGYGSEYNYTMILDRFEK
>SEQF1778_EEI64521.1 hypothetical protein HMPREF0534_2163 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVQEMAPELVTSAEGMDVMEQELAEKITKLDGEIKQEPKIIKGDSVRKRRRRFLKSFVTN
>SEQF1778_EEI64522.1 hypothetical protein HMPREF0534_2164 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKILLFAYARQTYSGRKIEMMLDENLPMRWLAYDYTYSYHTINNFRRSQHASKLIKHAFVYFTMVLKDHGLIQNHAVFI
DGTKVEADANKYSFTW
>SEQF1778_EEI64523.1 hypothetical protein HMPREF0534_2149 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKWVRKLAQSVVTIVLQALVARLVYHLFAKKQPKETTKSND
>SEQF1778_EEI64524.1 hypothetical protein HMPREF0534_2150 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLAFGPTGVVNASVQADTTTPATTQAGGIVAESAQPQNSGDETALDTAETKRNVVANTTDTSRTSEQKTTTAQATENSSA
ASSANKTNSEEENKNAFLTFNVNTADTPANEAIQENKIVATTATTTTNGGYDY
>SEQF1778_EEI64525.1 hypothetical protein HMPREF0534_2151 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGYLKEKSALMMFDRHANLKYKYGNRHFWAECYYISTVGLNESTIKKHIRDQEKRDISMDKLTSVEYSDPFKGK
>SEQF1778_EEI64526.1 hypothetical protein HMPREF0534_2152 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTFNFHSDKLTTIIKQKINYKEALMMENRVSNSKANATYQNSSKVKEVAYRIFAAVANAILVVLGGGLLTQTIGNLTGIH
VLTLIGGEAQALLAPAIGVAVASQMNTNTLVTFASMVAATVGSNGVHFTDTAVKGMTATGQVTAAAAGAPVLTTGQPVSA
VLAALVAVLVGKYLTGKTPLDMVLVPFGALAVGIGFGLVVAAVVTPALLAVSAYIAHSMQVSPVLGSMVISVVWALFLMT
PASSAALAVALMLDPISSAAALIGTTAQFVGFTAMSFRQNNLGANIAQGLVTPKVQFPNLLINPYLLVPTVVSAAVCAPI
ATVLFDFRSTSTLGGLGLNSLIAPIAYLSRGWAQFSTYMVFGVVAPAVLSIALYLVLKRAGFIGEKQLHLELV
>SEQF1778_EEI64527.1 translation elongation factor P [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIQTIDLKKGMVFERDGKLLKVLQINHHKPGKGNTLMQMDIQDLRSGSIVHTTMRPSEKVEQVNVDKRSAQYLYDEGDSA
VFMDLESYEQYSLNHDLLGDDKNYLVENMKVILNFVNGDIIGVELPTTVELTVAETEPMIKGATIDGGGKPATMETGLVV
NVPAFIKNGDKLIINTTDGSYKSRA
>SEQF1778_EEI64528.1 hypothetical protein HMPREF0534_2154 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKKIGFLMVTGMGLLLAGCGNQANNKAANSSSASSSSLLVAKSNVKVNSDNMSPQEAVSLISTYCGLRYGGNWAAMAKE
AQKEGLQVNLYPSSKYQLSDGGQGVAYDVTAGGKSQGLVYTVNNDDVNIYQNVKENQKSTKLATISKSEMANYVNQEGQG
KLVNDLAAKAQVVDKRSGDSNSSASTSNSGNDHKYGRSGTIDVPSEMQGTWYSADNDADSTITFGPHTFTYSGENSSTTT
QLFKQDSEWGEDEDNYTNEGIQNATKNWGKASFFNMDGSRWLNIRGWVQNAGDGSSYTVKTETIDGKQVKVLVSAGGAGN
WVDAVYYQSKDMAQQNADKKFDDLNYQ
>SEQF1778_EEI64529.1 cytochrome b5-like Heme/Steroid binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMADKVMTRDELAKYNGQAGQPAYVAVEGVIYDVSANPAWQGGRHHGNLAGQDLTDVLLEKSPHGKRVLKDLPVVGRLAE
>SEQF1778_EEI64530.1 hypothetical protein HMPREF0534_2141 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDQLIKRNNLPSTMRRVKRTLAKHRQEIIASFYIRLTNGPIEGTNNKIKIIKRTAYGYRNFFHFRIRILISLKTSNLMI
RELSKKRTRPKAKVA
>SEQF1778_EEI64531.1 hypothetical protein HMPREF0534_2142 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNDINFWTGIKDPYLITYTVILGVTSNITGYPIKKSSNGYPISLQI
>SEQF1778_EEI64532.1 hypothetical protein HMPREF0534_2143 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGRKSKYSAEEKFLILNEVLRNGIHKVIIKYKISQKTIRWWSLLYKYQGMPGLQASHHNQSYSKEFKNSLVEQYQQTDEA
LDLWLVSKVSQKR
>SEQF1778_EEI64533.1 hypothetical protein HMPREF0534_2144 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVGEFVPKEFGWELTFLVPYSIFMQLFANLWRFWGIDTMNIFLRFGFNLLGLVIAFAGYALYQQCDCCFQPHDKLTVYLK
RRASLKFTK
>SEQF1778_EEI64534.1 hypothetical protein HMPREF0534_2145 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPIIIILLCSLKNHAIFAFNIGTVIGFFSQNWIVSFWQERLEPCCHF
>SEQF1778_EEI64535.1 Matrixin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRRFLVALLVAGMVGISDYHVHADADAPSQPFQSSFFSQDSSDSNDFQFSNGGQRPNAERLRIPENTPTPLEGFRWKKKN
ITIYMETANPKLKWAFRDAVKKWNKTKAVHICWTKNEDKANIIAADGDLARNNTGNNGVGYTTSELGSTRTEYDPTTNTL
HKATSTLDPNQLDYTNKEFRSEVAQHELGHALGLAHAPEYEHSVMIPRNIKNGITKNDAKTLRMLYHE
>SEQF1778_EEI64536.1 S-ribosylhomocysteinase LuxS [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKVESFTLDHTKVKAPYVRLITVEEGAKGDKISNYDLRLVQPNENAIPTAGLHTIEHLLAGLLRDRLDGVIDCSPFGCR
TGFHLITWGEHSTTEVAKALKSSLEEIAYKTKWEDVQGTTIESCGNYRDHSLFSAKEWSKKILDEGISDKPFERHVVD
>SEQF1778_EEI64537.1 NLPA lipoprotein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNSKNKSKGVVMMRKKKHTGWWIIGIVVVILVAAGLSVGANGGFTRNDEITVGTIGPDVQVWQHIANSKQAKSEGLKIK
VKSFTDPVALNRATASGEIDVNAFQSWSYLQAYNKENKKAQLAAIGTTYLEPMGLYSDKYKSVKDIPDGATVAIANNPAN
TARGLLLLQSAGLIKLKPGFGATSGTNEIAANPKNLQFKEIDDTTGPRVLKSTDLVLIGNTIALTGHLNVLKDSIYHEKV
DQSTKDNINVLATAKKNRDNKEYKKLVKLYHNKQIQQWIAKKYQGTKVNVDKPLNYLEN
>SEQF1778_EEI64538.1 putative hydroxymethylpyrimidine transporter CytX [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHYLNQIKLKDGGIMQRQTTIIENSMIWCGAGISIAEILTGTYLAPLGFTKGIAVIILGHIIGCFLLFLAGIIGGQQRLS
SMNAAKISFGQNGSKFFALLNVLQLIGWTGIMIYDGALAANGVWHLNQALWVILIGTLIIGWLLIGVRHLYYLNLATIST
LLILSGLLCAAIFTHHSTSSPTSTLSWAQGMELVIAMPLSWLPLISDYTSVAQRPVPTSGISAVVYGLTSCWMVFIGLGA
AILTHDINIATIILQAGLGIAGLFIIIFSTITTTFMDAYSAGVSSKTIFSKWSGTMAAIGATILGTISALIFPMDNFSNF
LYLIGSVFAPMIAIQITDYFILKVDYRKQNCQWANLILWLIGFIIYRILLNYSFPLGSTVTTIIIIIAMTWGTQQVRNLV
KVK
>SEQF1778_EEI64539.1 hypothetical protein HMPREF0534_2139 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKYTVELSEEDIQMIKDCHSKNPSIMKAMNDAKKVED
>SEQF1778_EEI64540.1 hypothetical protein HMPREF0534_2134 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIYLRRATLDDLQSVMTIIEQARAQLKEKGNPQWQDGHPFQKTMENDIKAGYNWVLIDNQKIVGTATLQLTPEQTYEEI
KDGSWLK
>SEQF1778_EEI64541.1 hypothetical protein HMPREF0534_2135 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQGVRNFRYDTHYKNIPVQKIGQDIGFIKRGTIYIDDKIDNKHMGFELNLK
>SEQF1778_EEI64542.1 hypothetical protein HMPREF0534_2136 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPLVMYRMFRPEQVNFPHLVERLSLIIIITFGETLVNITHYFKGAIYSPLAIAIFLGVAALFGVYTLLVERFLNHHQHTR
GFIAMYTHVVMIISLLSITAGIIYMADEEVSRLFLSCFVASNLIVFYLCLWLYSFYNRRHLRFNGRDLRAMAIVLLLGSL
GIILCRENNLSLMSAFALTNVVEFGLLEWKLQRKKAL
>SEQF1778_EEI64543.1 hypothetical protein HMPREF0534_2137 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLELFYDLIFVYAISRITMMIHHPIDGSLPPRIYVEFIIVVIFILQIWLYQTVYINRFGTSWAVDTVGLLISMFAAIYLA
NNINTEWRLTFHAFNLSAALTTINLIFQYLFGSNTHFKRDHDLQGFIIALDLEFILLVTGLISMVSISALPMV
>SEQF1778_EEI64544.1 hypothetical protein HMPREF0534_2122 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNKELIYWVDLTGPAVFDEIVRLTIMDINNNVLFNHTFNTKLVDWWYSDLNGIKPEETYNEQQFENYKNKIQTIFNHAS
KLITFNASTFFLEKQGINLINKQIIDLADPFRVAGDENDTIDNLCTYYGYKLPDNIYSRTGINYAKAINYCWHKMGSNRK
A
>SEQF1778_EEI64545.1 hypothetical protein HMPREF0534_2123 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKYGYVSGRLKDEVSKQDGFQYQAKILLNMGIPYENCFADVFRNKNKERYQLFKFLTTVAQEGDVLVVPTLTCLYSNVR
ELCCLMYIVEDTGIIIQSSDMDLSSDSDSSDWIIASQLAHLGYVHYLRQRRASKAIKKSKYQSTLNTGGRHKRVITPLYH
QAYGYLQTHTYTATGLKFHLSKSTLYRIKRQIEYRKQPINTTQSYNLQRGDYNEE
>SEQF1778_EEI64546.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTQFGYARVSTKGQSLADQINQLKSAGADKILAEKFTGTTTSRPQFDKLIKLVKPGDTITVTKLDRLARNTREALNVLDP
LMNNGIKFNVLNIGILENSTIGKLVKTILLAVAEMERDMIVDRTQEGKRYAKLHKRDYHEGRPKRLITPHYQAAYDYLMD
HTYKDTARAFDISVSTLQRIKNQVENG
>SEQF1778_EEI64547.1 hypothetical protein HMPREF0534_2125 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYPFSVLLFSRIGKGYFILPKVKKKNGVMYWPSTPRFLLMAEQLHLTREFNQRPEDVDEEPDRIKLLPPQFLSSLVATEP
YEGYQKERLNFTGNGIYQYVKCTAHNVAQIDVHSLLPTMAYQLGLLDERHEALFLEKKKIEADPNYPNNKRLVAKRERIK
LELNRYCSTIGETRVEHSINRYKAMYSGMNMVFDMLNYWGLSNVINCVNDGFIITNYSQEKFEQFEEKYCKKIKYLTFSV
KQYDFCLVKNDLEYLLINNDDEYKCRNHEFDMKSAYRKLTGKSLNDETVSFDSKALLEAEHVEKGAIKVCKNLFLKTSH
>SEQF1778_EEI64548.1 hypothetical protein HMPREF0534_2126 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFGQTILATEVDDIDDFLKLHSNFSLVDTLPITIATIADDKIEDWLDNILDKNKDSLVKNTYLYNELAMVLQIWAVEHNL
DANRLVKKLYNALKYNTLRKQIVAEKVYNDPRSLLVDNQLMVLNDNHIYTAEPTIVNGLIDQFLPNSKFDNIMNARKNVH
AQLMDSKFENEKLDDGFKSPNQSITIQSDGNIQIASPLIGKMENYVNVDYVDIDKNPKLKASEEYKQVIQFLAHISGGKL
EQLLYMLGFIPLQNTGIMAKVRRFFILLGVPGAGKTVLASLLEKIFNNTQSNSSSILTSESNINKALTDPNLIDANDTKK
GQLTLWFDDFQTDSQNNAISSKAGTAINGIISGKTMSGAAKFQQYHDVKLPSLIVIATNALPQIRQVGTADRMFVFDCNT
KLYDEVDIPNDDAAAWINNKEVQEVMFYLIIKYASKLVTMSKQDLGLIFSQENSAQSSLSNINSSLLEFLEAQHITCPFD
LIGMGTSDLFETYKNHTHMVTASYRTFKEQIKSLGLKFQRKHFNGNYYSNVIVSGNKALDNGKMKDMLVKYAVLPDKLFN
YETSDTYTLDHWHENFVIYREEQGKNKQNSKLFVPFNFND
>SEQF1778_EEI64549.1 hypothetical protein HMPREF0534_2127 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLGERVMEYQTNQVVNVRQELFLKCFSKVNAMGNAKQLPINVINSDHCIVGMYYPINAYDKLDKKIDELTKEIKRLKSYR
YDMNKGDI
>SEQF1778_EEI64550.1 hypothetical protein HMPREF0534_2128 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKPMVNYKDLIRLGFKEHQARDIIHQAKINLVEQGLPLYNGKRIGVVPVRAVEKIIGFPLLKDGNDSIGKD
>SEQF1778_EEI64551.1 site-specific recombinase, phage integrase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIALAKTKYPDVYVDNKGHYYYLVELGHDLLTGKRIQKKSRRDANNNRFRSAHDAYKECLRIKNEYQSQNGYANYGLLYS
DFMKNYYIPSYQSDVERSTFKSRQSTFKHLIKWFGQYKLRSIRSIDCEKFRVYLLNKSGYSQGFSSMVYSMFRNTLDYAV
RMDFLAKNPSRKTKAINKGKSNVAFWTKSEFEKVLSVIYTKDYYQHMCFTILYLYFTCGMRVSEGLALTYDDVDYKRHRL
RIHKTLDMTNKEHYTIKPYTKTINGIRTISLDNDTIRVLKSWQKDQQAHGVYHFIMSYDDTPMSRTTIPLIIKRFAKIAG
VKPIQAKGLRHSNVSYLINEFNADVLTVSRRLGHSGPDITLKYYSHLWPRNDESIADKMEGNIVFKNAKENRLAFNGNQH
LHSTK
>SEQF1778_EEI64552.1 hypothetical protein HMPREF0534_2130 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRNIQCKSWVFFAIKGKFQAVINAIAKLDCSFFFLIDKLVAL
>SEQF1778_EEI64553.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPKTRNRYGVAIAGVILHLMIGSVYAWSVFTKPISGYTGWKETSVSFAFSLAIFCLGMSAAFMGRLVEKFGPTVTGTISS
ICYGSGIALTGLAIQSHQLWLLYVAYGVIGGLGLGSGYVTPVSTIVRWFPDKRGLATGLAIMGFGFAAMLTGPIAQSLMA
NVGVVNTFYILGGFYFVVMLVAAQFIKKPRSHELPPAIAKNAERISLTGRELTANQALQTRTFAFLWFMFFINITTGIGL
VSAASPMAQDMTTMTASAAAVMVGIIGLFNGFGRLAWATLSDFIGRPLTYSLIFVLDIVMLFVLLLFKAPFIFALALCLL
MSCYGAGFSVIPAYLGDVFGTKELGAIHGYILTAWAIAGMVGPLLLSYTHQVLHNYYVTLIVFIIIDALAMIVSLLIQRD
FITNRQTKLVIK
>SEQF1778_EEI64554.1 putative bacteriochlorophyll 4-vinyl reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHNLIFLTDLTGSDLDPYMRLNEAQLFHALEPNPGLFIAESPKVIERALRAGYRPASLLIEEKELERDLADLDHEMAINQ
TRGLEQTPIYVVNSKLLRQLAGGGYNLLRGALAAMHRVERPSLNNFLATMPSDHPRIAILESVVNPTNIGAIFRSAAALG
IDGVIVTSDSADPLYRRASRVAMGTVFQVPWTYVDAKVWQSEGVDLLHRAGYKTAAMALRHNTVDIDDPQLAKVDRLAII
LGSEGPGLRENTITQSDFTIKIPMATGVDSLNVAAASALAFWELGNRKVK
>SEQF1778_EEI64555.1 TIGR01440 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKIKEQTATGLTELLDQAQLEKDDLVVLGLSTSEVHGGIIGKDSNIEIAWAIVSTVVNILRKHQLHLAVQGCEHLNRAL
VVERNVAKERGFEQVTVFPSLHAGGAGQIAAFENFNDSIEVEHITAEAGMDIGDTSISIHVKFVQVPVRTSIKQIGLAHT
TYLRNRPKLIGGARAKYEWDPFDNK
>SEQF1778_EEI64556.1 DNA-binding helix-turn-helix protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKIGVNISHRRHELKMTQEELANATDLSTNYVSRLERGEVEYIRALTLSKIAKGLKTTMEKLIDGNTNQQHIRGHYQST
LINLLDQIDEQKAEEISKNVLDLVSSNIVVHNSSTKNNQ
>SEQF1778_EEI64557.1 KxYKxGKxW signal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFDIKLKYFLNIIYSMLFLDLRGGNILEVKKHFKLYKSGKQWITAAVATVALSAGMVLGGVAHADTTTPADNQSVATTQP
VGSQNKATQDSTQGQTAANNVVPDLLQHTLAAATNNNTQNASDLNAQKTQQSQSYNHDDNGSYGNFDSVAVDGNQLHVTG
WQATNKAAQYGTDNRYLIVVGHNDQGQQEELGRTKLTSDMIVNRPDVQKAHNVYNAANSGFNANVQLDVNKLQNYRNAIQ
IISRYSKTADGNGFYDGSDYVSQPVTFDKNNYAYLDQMAVVNSKLHVAGWNATNDALGKANHYVILYDQTQGRELARVKV
NDQSRPDVANAHKDVINANNSGFAADFSLNGVDLTHQLQVISRYSDAANGEGNHVDYWFAPQALLQANLTNQGNLDQFNV
SKAGEVTVTGWHATDASNIERNHFLILFDQTANRQVASIKVDTVARPDVAKVYPNVKSAGQSGFSATFKVKNGELAANHQ
YAIVSRYSAVADGNGDSGNHTDYWSNGVKLNQSAYWLDHLKMTDQGLHISGWVASDNSLSQPHAFAFVMNNGKEVARQEL
KLAARPDVANAYPSLYNSAMSGFDTTIKLDNISKLTGNLQVLLRFTNNKNGDLDNGQATDQYSKNYATAGHSFDYVKANG
NTVQFAGWDATDQAINLPYQWMIVLVNGQEAARQLISSDMTDGLAGFDRTDVYKVFPEVANSAMSGFQGTMTIPVAVKNG
DTVQLVHRFADSSTDAEKQYIQSYSPVLTVNNGSAQLGQYALRKFGLQKKDGKDYYYDPTTGQVRKNFLMQTKDGWEYFD
NDTGAGTDALKLQFDKGTVSLDRLFDYGNKAYDFTSKSIENVNGYLTADTWYRPAKILANGTTWTDSKDTDYRPLLMSWW
PNKQIQVDYLNYMKKQGYVSNSQDYTVNDGDYTLNYAAEDIQRNFEKRIAQNGTDWLKQLINDFIKTEPIWNEKTENVNY
SGLQFQGGFLKYENSKLTPYANSDYRLLGRMPINIDGKGYKGAEFLLANDVDNSNPVVQAEQLNWLYYLLNFGTITGNND
QANFDSVRVDAPDNIDADLMNIAKDYFNAAYGMNSDAVSNKHINILEDWNSSDPNYFNKIGNPQLTMDVSLKGALNHGLS
DSKNRWGLNAIVYQSLANRANDSTENEVIPNYSFIRAHDNNSQDQIQNAIRDLTGKDYHTFTQADEKKGIDAYIKDQNST
VKKYNLYNIPSSYAILLTNKDTIPRVYYGDLYTDGGQYMEHRTRYYDTLTNLLKSRVKYVSGGQSMQTMSIGGNNNVLTS
VRYGKGAMKATDSGTAETRTQGIGVVVSNDQNLKLGANDTVVLHMGAAHKNQEYRAAVLTTDNGVVNYTSDQNAPVAYTN
ANGDLYLFGRNLIINGQEEANTAVKGYANPDVSGYLAVWVPVGASDNQDARTAPSTEKNDGKSAYRSNAAFDSNVIFEAF
SNFVYTPTKESERANVRIAQNADFFASLGFTSFEMAPQYNSSKARTFLDSTIDNGYAFTDRYDLGMSAPNKYGTDADLRN
AIQALHKAGLQVMADWVPDQIYNLPGKEVVTVSRGDDHGNAWKDSMINNDLYVANTIGGGEYQKKYGGAFLDQLQKLYPE
LFTKKQVSTGVPIDPSVKITEWSAKYFNGTNILHRGSGYVLKADGGQYYNLGTTTKQFLPSQLTGVKAQDNEGFVKGADG
SYYFYNLDGQMVKNTFIQDSTGNWYFFGQDGKMVENQHFVNVDSYGTSGTYFFLNNGVSFRSGLVQTNDGTYYFDNYGRL
VRNQVITVGAMTYTIDQNGKIVKTSYNPDADRPVSTDIGQMTDQNRI
>SEQF1778_EEI64558.1 LPXTG-motif cell wall anchor domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
TDPDKKPVTDFEANWTKEPDVSKPGKSTGTVEITYPDGSKETVEVPVTVRDANGHTQADKNDPKTPGNKVKVDDPTKLTD
GEKEDVVKAVEDANKDDNGNSTLPDGTKITVGDNGDVTVTYPDGSKDTIPGDKVVEGKTDADKTDVTVPGTKVEVGDPTK
LTDGEKGQVEEAIKDANPNLPDGTKITVADDGTATILYPDGSYKVIDGQDLVTKPGQTTADQVTPVVPGDKVTVVDPNHL
TDAEKDQVKTNVEKANQNNFPAGTVVMVADDGTATITYPDGSVDQISAADLITKPMAAGQAGKGTGTTTTNGQGAPAGQG
KADQAKTLPQTGNEQGSLLAASGLGMLLLGMLGLGGKRKKED
>SEQF1778_EEI64559.1 hypothetical protein HMPREF0534_2113 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAPVFKAKGKPVSKAKISSRPVVKMVKRIPLSSTFAAICLYGAWVGDDIEGGFEIKLGAMISCFSSIKSLLTEFLVISIG
DLKLKI
>SEQF1778_EEI64560.1 hypothetical protein HMPREF0534_2114 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQLTFAELAQMLQKATGKTQQATVDTLFDWAFKKRERVSQASAHRYLNGESDIHKYVYKDGNEERDIKLIIKEIKQDLS
KQSTNILLDDLRAKGIKISPSKNLYQGSVAEVLAKQLNEIIKDADKTSHNFSKIPKNSQSKDNKKMSNKAVVSSLIRHIS
KLFNSRFPNSNEYKYAFAIYIANNISNSTTSISINVSREEWQQTKSHIQKVPLLLARTLYTAQDPVKDMNHPFGPFAEEQ
LPYDYDEKIMTSNIVTKNDTEYYADENNQALQATGKKLKRFYSIKEENPPIPSYAYIGEISSFNITSKTTNNYLTVTLTC
NIIDKLNYDLIKNNHQQLGIPEKLFYNNNYHFEYIDNIDFLSRINSLMNASEK
>SEQF1778_EEI64561.1 hypothetical protein HMPREF0534_2115 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKDKGNNAHSLEKKRDDVEQLLARMKHSSVDLHKTVVSVLTKLPLTNSNGTFNADMINTVWKYKQIVDSLAETSRRWAIS
KHFIYDVCLPDISDSNNEDYSPVYQRYAAKLPVDQFGELDQEVFVATNPQKTTGKLVKRKDRLVGDARLQNIKTFGSAWN
SAGEVINTDTNSHPILDGYAGVVAGHIDDIVRQELQHSRRDRHVQAFMIAHTRDREEVQWSSEPRLKESHIHIVIAISAA
KSRYQMMRLMGYNFDDLTETFEWIAQNSSDEEDMRERADSFLSTLIGAIKNYVVPADYCAALRYLVHQSKKAVHDPQKTT
YSSNEVISWLPDDPGQTYDDIASIHDNESIANNLESQVLYHLQNSAYCQAHHILEKYVGARRGDKAFTFEQIGELRRLGK
KQPGKLCFSNRSKDSILSLVMHWIRTKRIQFSDCQILIHAAFNDKDADALIADAKFMDRLSNVLAAEEQAIISDPAAVRD
MTTYCIFAAQGGIGKTRLANAMALLMDKYRKPYQVVTRNKQVTFDPFQNYESETSVIMDELNPSSLGWAQIKDLLDPFKI
PYVGSRFHNKSPWNIKHTFITNVFENGISDYVNGVLHYAEGVSSLGYLTKDGGDWNLITNDIEAGKHYVSQLSQLLRRLS
FVINLAPTENGRGTSIKVSTINFQPSGRQVDHYDYVHTQDSCHVFRTVINDDLREKDMEKIAKKVIQMVNQLKVQAKEAF
KANPDRLLDEVDGFIADRCDFSVRYNAKHEPYLVAKDGESVSALFQSEPAVPPTQNLITILNRTKVFLWPDVDKTKVHVD
PKLNQLDALLKGYEVPIEKVGFDEIKTLKLTKEALKLVNSDHSATIWKVLNQETPRQIASEYFTVQTNKNIANFKVI
>SEQF1778_EEI64562.1 hypothetical protein HMPREF0534_2116 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDPLSKILNPYTFIRLFIFSEVVAREAISRYCSEHNLVKPKVGEPWTLTCPTEAQTVTFEFGDRGDFWDGESNTFVNQS
QINGWKKFLLVSSNGDYRTFFDMASTERRWLFTAIKETRSSDDFASKLIKNINNYVNYFKNNRYGERLLLLRRLSRVYAD
DMFMNYAGDQVLKLVGSDTQLNFYQQLGLDGLKFNGQPNAYLSQKEIDHEREELGVTKEEFKRFYTLDYGERYLLFESSL
FY
>SEQF1778_EEI64563.1 hypothetical protein HMPREF0534_2117 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIWNGKPSKYLPILLLEHYKKQHNVSNHQYVHLFELRSSMRQSLILAYLQNKKDFAADQSIAKPSTIILPNHCRPYYTPS
QKVGGNQ
>SEQF1778_EEI64564.1 hypothetical protein HMPREF0534_2118 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKATVSKSELIAMGFKPNQAKTILHDARQIMVKRGKTFWSNPRLQVAPRAIIEEVVLGVPLEEDDADGKD
>SEQF1778_EEI64565.1 site-specific recombinase, phage integrase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKTKYQSVYRQPPRNGEQGYIYISVYLGLDPLTGKKIIKKARRDKNGNRFKTLRDAHLEAERIRDEYSKNGFPTQSGNV
KLLDFYNKVFKPTYRGNVEESTWLSREPVLEMILKRFGDKKLKQIQPVDCLQFRNWLLSDEKGYSQSYASLVYGLFREVL
DSAVELDYLTQNPSRIKKATGAISKGHHVIHYWTLEEFKKVISKCYMGDIEGALAYVMLNLYYFTGMRVSEALALWWSDV
NLADGYIKVSHTLTNTKDPDKKRKNYTKTAAGMRTIDIPQDLVDLLKWWKKLQYENLPQHSDDHYVLSATDEPLHRSTVN
NVVNRYADLAGVHRIQAKELRTSHACLLINKYNVDILAVSQRLGHAKPTTTLKYYSQLWRGRNRTVADQLNGAIGKIEHP
DHSLVDFNGNQFVAL
>SEQF1778_EEI64566.1 integrase core domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTYKHLTTRELTLIANFWHQGTKAYQAAKLLKRSQETIYRVYRFLDSGKTIAQYLKAYQRNKQRCGRKQAQLAKDEISYI
NEQVKAGWTPDTIIGRAERTISCSMRTLYRMFARGQYNFAVQQLPMKGKRHPNGYVERRGKAGHLGRSIYQRYHDFPHYQ
HEFGHFEADTVQGKAHRGAVMTLVERQSKVMIVLNVHRKTDEAVNYHLDKWLSKMPRHFVKSITFDNGKEFAGWREIANK
HDLHTYFAEVGAPNQRGLNENNNGILRRDGLSKRLDFRNLPDELITQLMHKRNTIPRKSLHYRTPLEVFLSHVTDEQLST
>SEQF1778_EEI64567.1 hypothetical protein HMPREF0534_2110, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILDQFEKQPVIPYTTYQKEQKHKFKNDPTKSQNWQYNAEDDYYIDHLGVRFSF
>SEQF1778_EEI64568.1 hypothetical protein HMPREF0534_2109, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDILTEIEQNLVKSGSLFEAEQIILKGVLELGQVIMQNFLESLDRSLKSQAPANYQVINKQPRTLNFIFGPVTFQRRYYQ
AGTKKREFYLDQQLKIKPRRRLSPHYLMMMAKIAQTTTMRNTADILNLVFDSGITADSVMHAVHELGNQVAKQTQAKEHQ
ATPRHMPKNLTIEGDAFMIKGKKEAGQLTLVHHYRVYERVANQIINRHDFLSVGHQGRLEARLSDYLDRHYKLAGQTIFL
ASDAGPGYEPAKLLSLVPQGAHGEYFLDRYHCLQKIEHTLGRHNELAMRAIKAVRHHDQAELTIILDTYESQNLTEKQAD
DLMRLRKYLQRNWRYILSPQMRGFKDIHLIGSVESSHRAFTYRMKKQGKSWTKQGAKAMIGLIEARMNGELQASLNTILE
QLTVLPRVAQTSLLQEMHIRTGEFLRKAPTKPSIGAVQGIIPINT
>SEQF1778_EEI64569.1 hypothetical protein HMPREF0534_2108, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFEEIHRKMRGWLQYYSIGKLTNFIQRLDKWLRVRIRQYIWKQWKKFKTKVTNLQKLGLSQRDAYVFASTRKGYWRTAHS
KTLSYSLTNRKLEQL
>SEQF1778_EEI64570.1 phosphoribosylamine--glycine ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKQVNVLVVGEGGREFAVAKKLQESPRVKQVYCAPGNVGMSTVGVVPIAIAETDFAKLIQFAKEHNVAWTFVGPEDCLV
DGIVDEFKAAGLKVFGPDARAAQLEGSKDYALNFMNNYHVPTARHATYRDQTAAINNVGQFGFPVVIKENGLAGGKGVVI
AKDRAEAIKTIKEMFVNGQARLVIEECLSGPEYSMFVLISNGHYRILPMAQDHKRAFDDDKGPNTGGMGAYSPLPQLSSA
VRQQMIDEVLKPTIDGLVAGEYHYHGILYIGLILTDNGPKVIEYNVRLGDPETQVILPRMKTDLFELVDAAINDRPLPEV
EENEDACFGVVLASKGYPTKPIHGQKLGTFPVDPNVTIDYANVAGTINDLKGAGGRLLMVIGKDDSLQKARDHVYGYLRQ
LDEPECFYRHDIGAKAGLQ
>SEQF1778_EEI64571.1 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRALVSVSDKQNLVPFVKGLVENGFEIISTGGTKRVLDEAGIETIGIEDVTHFPEILDGRVKTLNPYVHGGLLARRDLP
EHMATLEKLNITPIDLVCVNLYPFKETIEKPGVELADAIENIDIGGPSMVRSAAKNYHDVTIVVDQADYDEVLAQIKEDG
ETSLATRARLAAKAFRHTAAYDSLISQYLTKQTGLEDPEKLTLSWDLKETMRYGENSHQKAWLYEDALPKAFSVLQAKQL
HGKKLSYNNIKDADEALRCIREFDEPTVVAMKHMNPCGIGRGDSLVQAWDRAYEADPVSIFGGVIALNRQVDLATAEKMH
KIFLEIVIAPGFDDDAFELLAKKKNIRLLSLDFSKKDEPTKHEVVSVMGGILLQEQDTLKEDYHDWQCVTEKQPTEEQLK
TLMFAWKAVKHAKSNAIVLANDERTLGVGEGQPNRIDSLKIAVKHAGEAIDDRTVMASDAFFPFGDCVEYAGQNGIKAIV
QPGGSIRDQESIEMANKYGIAMVTTGIRHFRH
>SEQF1778_EEI64572.1 phosphoribosylglycinamide formyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVAILASGNGTNFEVLAQHFKNNDLPGELALLFCNHPDAPVMKRAARLGIPAESFTVKSCGGKQEYEEKLLGVLKKYQI
DFIALAGYLRVIGPTILDHYAHRIINLHPAWLPEYPGLHSIERAFADQQAQTGVTVHYIDARLDSGPIIAQEHVPILPTD
TIETLEARVHETEHRLYPEALKQALEKEQH
>SEQF1778_EEI64573.1 phosphoribosylformylglycinamidine cyclo-ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSRYQDAGVDVNAGYELVHRIKDAVKSTDRPGVIGGIGSFGGMFDLEKLQVRHPVLVSGTDGVGTKLLIAQQMNKHDTIG
IDVVAMCVNDVLAQGAEPITFLDYIATGHNDPAKMAAIVSGVATGCREAGAALIGGETAEMPDMYAANEYDLAGTVTGIA
EKEELLTAAGPQKGDILLGLPSSGLHSNGFSLVRQILFKDNHVKLTDRPEALRGKTVGETILTPTRIYVQAVLPLVHRKL
VHGISHITGGGLIENVPRMLEDNLQAVIDPGRWPQLPVFDYLRVLGGLTKEDCFEAFNMGIGMVLAVAPDQVAQVQEILS
NKNMTSYQIGYLRHCLPDTKKIVIK
>SEQF1778_EEI64574.1 amidophosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGGNSVPTEIKGLNEECGVFGVFDAANASQLTYYGLHTLQHRGQEGAGIVSTDGTELYQHRDRGLLAKVFADPAELKRL
KGNAAIGHVRYGTSGHNSIANVQPFLFHFHDGAVALAHNGNLTNAVTLRRELENEGAVFQSDSDTEILIHLIRKYINEGF
IPALKKSLNLVHGGFAYLLLQKDRLIAALDPNGIRPLCIGRLENGAYVVASETCALDIISAQFVRDVLPGELIVIDKNGL
HIDHYTTQTQLAICSMEYIYFARPDSIIHGVTVHNARKRMGKLLAKEHPVDADMVIGVPNSSLSAASGYAEESGLPYEMG
LIKSQYVARTFIQPTQELRELGVHMKLSAVRGVVKGKRVVVVDDSIVRGTTSKQIVQMLKRVGAKEVHMLISSPPFKFPC
FYGIDVSTRSELMAAHYSIEEMRQLIGADSLNFLSIDSLIKAINVPDAGDAPNGGLTVAYFDGKYPTPLYDYEEGYLKSL
SEQERLARKG
>SEQF1778_EEI64575.1 phosphoribosylformylglycinamidine synthase II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQAMTPEEIKEKKPYLDWSLTEAEYDYIRTQLLGRLPNYTETGLFSAMWSEHCSYKKSKPVLRLFPNKNERVLQGPGEG
AGVVDIDDGQAVVFKAESHNHPTTVEPYQGAATGVGGILRDIFSMGARPIASLDSLHFGELDNSTTRMKVTNTVRGIGDY
GNCMGIPTIAGETTFDPCYQGNILCNAMSVGLMDQKDIQQGRAAGIGNAVMYVGAKTGRDGIHGATFASADFNDENTTQR
SAVQVGNPFMEKLLLEACLDLIRNHPDWLVGIQDMGAAGIVSSSAEMASEGKSGMELNLDLVPQREPGMSAYEIMLSESQ
ERMLLCVKKGHEEDVKKIFDFYDLEAVTIGRITAGHDYVLFHDGEEVCHIPVSSLTDDVLEEESLEKKPARIELAEQQPA
WIPDVDNVAEVLTALLAQSTIADKSSLYQQYDSQVRTNTVAGPGSDAGVLRIRGTHKGLAMTTDGNGRFVYLSPEVGGQI
ALVEAAANIIASGAEPLAITDCLNYGDPTDPEIFWELHQSVQGMADACREFNTPVISGNVSLYNENNGQAIHPTPMVGMV
GLIKNIDRVIPSFVQYPGDKVYLVGQTRDDYAGSELQKMMTGDISGIVKSFDLHHVHQYMQRLLTTMENGLVSSAHDLSE
GGLGVALAETVFKTDLGLKVDFADQPAARLFSETPGRFIVTVAPDKATEFEQALGEDAHLIGEVTNTHWLMVKLANGELN
ENVAKLQKTWEEAIPCQLKSKD
>SEQF1778_EEI64576.1 phosphoribosylformylglycinamidine synthase I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIAVVVFPGSNCDVDLYEALHSVCHADVEYVSHRQKSLAGFDAVMLPGGFSYGDYLRAGAIARFTNIMPAIIKMANEGK
PVFGTCNGFQILTEAGLLPGGLKRNDSQRFVCKTVPLEVVNSQTLFTSHYQDHERIALPIAHADGSYYADEKTLDELEAN
NQIVFRYATENPNGSLRNIAGITNKHGNVLGMMPHPERAVETILGSTDGLRLFESLLENGRIKVEA
>SEQF1778_EEI64577.1 phosphoribosylformylglycinamidine synthase, purS protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVNVRIFVTYKQSVFDPQGETIKDAIHSLGHDEVTAVKVGKFFDVTLDTNEDEVASAVKEIADQLLVNFNMETYTYQVME
EA
>SEQF1778_EEI64578.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKLLYTGKAKQMWQTEDPAVLRVVYLDQATALNGKKKDHFTGKGKAANAISSLVFDYLMKQGIETHFIKKLSTNEDLVK
KCEMFPLEFVTRNVIAGHFASRYGLSEGEELPSPVEETFYKSDELNDPFINESATIALKIASKEELAQMWGICRKVNNLL
KPLFAKANLRLVDFKLEFGRLSDGKIILADEFSPDNCRLWDLTTKQHMDKDVYRRKLADLTQTYDEVLERLEAVMKEEA
>SEQF1778_EEI64579.1 adenylosuccinate lyase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDRYTSPEMKKIWSLETQYQCWLDVEIAADEAWSKLGHIPAEDVEKIKKNAKFSVEGIAEIEAVTHHDVIAFTRDVSKS
LGPERKWVHYGMTSTDVVDTAQGLRLKKANDILRQDIDNFMDVLKDLAEKYKYTVCMGRTHGIHAEPTTFGLKAARWYSE
MKRNKERFEHAAKGVEAGKISGAVGTFAEIDPFVEEYVCKKLGLRPQEISTQVLPRDLHAEYIATIALIGTSMEEMATEI
RSLQRTEIHEVEEHFAKGQKGSSAMPHKRNPIGSENITGCARMLRGFMVPAYEDVSLWHERDISHSSAERMVLPDATSLL
DYMLRRFGRILRNLDVFPETMKKNMDKTLGLIYSGRVLLKLVNSGMTREAAYDLIQPYTAKCWAEQIPFRPLLEDDPTIQ
KQLTKEDLDDAFDYHWHLRHVDDIYKRLGLD
>SEQF1778_EEI64580.1 phosphoribosylaminoimidazole carboxylase, ATPase subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKQKKVGSILNKFIPQGSTIGIIGGGQLGQMMALDAKQTGMKVIILDPTPNCPAGQVADEQIVAPYADTKAIEKLADKA
DVLTYEFENVDLNALEDVQDRVYLPQGTNLLYTTKNRLREKNFLRQAGVKTAPFMAVHTSAELKDAVKKIGYPAVLKTSE
GGYDGHGQEVLRNKDDLDKCASILATGDCILEGWVPFNRECSVMVGRNEDGEITAFPVSENIHHDEILHLSIVPARISSE
LQQKAQKIAVQIAQAINLRGILGVEMFVTDDGEIYINELAPRPHNSGHYSIEACNFSQFAIHNRAICNWPLPQVELLKPV
VMVNVLGQHVNGVRQQIQKKANWHFHDYGKAEVRHNRKMGHVTILTDDIEATLAEIDNTGIWGA
>SEQF1778_EEI64581.1 phosphoribosylaminoimidazole carboxylase, catalytic subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSDISVVMGSKSDWPTVKETCAILDQFGVIYEKKVISAHRMPNEMFAFAQNAVDNGVKVIIACAGGAAHLPGMIAANTPL
PVIGIPGQTKALGGMDSLLSIVQMPAGIPVATTAIGKAGAKNAALLALQILGITDKHIQQQIIEYRQAMHDQAKESGQYL
E
>SEQF1778_EEI64582.1 homoserine kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIQAPASSANLGPGFDSIGIAVSLYLKLEVLGPSDNWQVDHQLGKLPHDETNMIVTTALSVAPDLPPQHLRVVSEIPIA
HGLGSSSSAIVAGIELANQLKNLNLSKEEKVEIASQIEGHPDNVAPTILGGLVVGTHINGHFSAIEAPLFPYAFAAYIPP
YNLKTADARAALPYQLEYSQAVHASAVANTFVASLFAKNYDVAFKLMEADRFHEPYRKELVPELDQIRELGKKHGALATY
LSGAGPTVMTVIDNDNYGLFEQAVHAAGLKGKVVRLHPDVEGVKLI
>SEQF1778_EEI64583.1 homoserine dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNIKLGLLGLGTVGSGVLQMVQQNADKILDVTGCKLTVKTALVRNLGNYNKYADETSLTTDFDEILNDDEIKIVVELMG
GIHPAKEYITTLLKNHKNVVTANKDLIASYGPELMTVAHENHCDLMFEASVAGGIPILRTIANSFTADKVTEVKGIVNGT
TNYILTQMSQRGWSYHQALAQAQQLGFAESDPTNDVTGKDAAYKMIILSQFAFGTQLDIKDIAVEGIDRLNDADVQQAAS
FGYVIKLLGITKLVNNGVFVEVGPVLIPRDHPLATINNEFNAVMVTAQAVGDTLFYGRGAGGLPTANSVLSDITTVTKNI
ILGTNGNLFNNYQQPYIPAKLADIKYPYYLSLTLPDVPGQMLKLTQMMTDINASFREITQTKDGKIAHIAIITHRMSKEQ
LQTLLTKVANDQSINLSAAYKVMG
>SEQF1778_EEI64584.1 threonine synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDYRSTQGDLSTILKSPTAILQGLSPDGGLYVPLHFPQPTYNLATLISLPYQQLAATILNWFFDEFTSDQLLKNANTAYG
SQWDNRLIAPLTPKHASNYYLELFHGPTLAFKDIALQMLPQLVSRAAQNTQLEKQIVILTATSGDTGTASMRGFSNQKDT
QVIVFYPAGGVSPVQLRQMLGQPGSNLHAIAIKGNFDDAQTSVKHIFNDQAFNDRLAQNNNCFSSANSMNIGRLIPQIVY
YFAAYGQLVHTGGIQLGEKVNFTVPTGNFGDILAGYYAKKLGLPINKLLCASNENNVLTDFFKSGKYERRRNFYLTNSPA
MDILVSSNLERLLFDLYDESCVTVAKLMKQLATNGHYQVDSTVLNKLQEQFVAGFATPDEVEAEIKRVYLNDGYVIDPHT
AVASHVTHQYQQQSHDTTPTVIVSTASPYKFPETVYHALTNQKVSQSGLPALQQLHDLLGDQLSAGVQALVDQTPRQEKV
INPADMETLISKILNLK
>SEQF1778_EEI64585.1 transcriptional regulator, AraC family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLIAEIKFQEQHQQLTVIPRERSKNILAYLHKHYAEKVTINDSATAVNISPKECIRSFKKNIHQTPIEYLLNYRVEQAK
KLLRHSELSITDIALRAGFSTSAYFSKIFKERVGMTLREYRQRQG
>SEQF1778_EEI64586.1 hypothetical protein HMPREF0534_2104 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQYLNPVLKNRSVEVLVIQESNPTGKKFITLLHQLTDVADQPDKEF
>SEQF1778_EEI64587.1 hypothetical protein HMPREF0534_2105 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTYLNNQGSIQVINNHYLDNTMFDELNDFAQLFTNPESSQQQDNYQRWLELAKIVNMTLYRLRKSANIIFPSDY
>SEQF1778_EEI64588.1 alpha-acetolactate decarboxylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKRGTKIMTTLYEHGTLAALMAGNFDGTITVGDLLKHGSMGIGTFTGLDGEVVILNNEVYQAVSSGQVNHITDMDATMP
FASVHFPAEQQDITLRNVNFAKLNNDFVKEHQLANVFAFLQLSGEFKHVKIRIAPKQEKPYPTLLDVAQHQPEFAADNIA
GTIIGYYAPEIFGTITAAGWHLHFISDDRQFAGHLLAFDASKLTGSFEVFDNLEQHLPIDNKEFRESTVDMSTLRDGIAK
SEGNAD
>SEQF1778_EEI64589.1 acetolactate synthase, catabolic [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEEKLHGADIVIDSLRKHGVNLVFGIPGAKIDRLFEGLDGQDSEDAPKLIVTRHEQNAAFMAQAYGRLTGKTGVAITTSG
PGVGNLATGIMTANAEGDPMLAIGGQVQRKDLHRATHQSTPSTEIMAPITQYSAEIQDPNNISEIMANAFEASQDARKGA
AFVSLPQDVDDAEVTEKPLPIYETPKMGPADPNDLQKLVELIKNSKMPVILVGQRGADEEITTALRKLLSDYSLPVVETY
QAAGVVSRDLEQQSYFGRIGLFRNQVGDQLLQQSDLVIAVGYDPIEYEPRNWNKEGNLRIVNLDTLPAQIDNHYTPIMQL
VGNIAISLTELDKLLKGYEYPVAATEQLAKYKQELDQDKKIQVPASNDASHPLAVVHAIQENVTDDMHVALDVGSHYIWM
ARHFRCYQPRHLLISNGMQTLGVGLPWAMVAAMLYPEHKSVAVCGDGGFLFSGAELATAVQHHLNVVTIVWNDGGHYDMV
KFQEEMKYSQAAGVKFGNVDIVKYAESFGATGLRVNEPADLTKVISQAFNIDGPVVVDVPVDYSNNKELAANLIDSQLG
>SEQF1778_EEI64590.1 tyrosine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVNMDILNELEWRGAINQVTDEEGLRKLTSEDKIALYCGTDPTGDSLHIGHLIPFMILKRFQLAGHHPVIIIGGGTGAI
GDPSGRKSERQLQTMDQVHHNEEALTAQMKKLFGTENFTIVNNYEWLSKISLLDFLRDYGKLFNINTMLNKEVVASRLDA
GISFTEFTYQILQSVDFLHLYRHNDVQLQIGGSDQWGNITAGIDLIHKVEGSDTKVYGLTIPLMLKADGTKFGKTAGGAI
WLDPEKTSPYEFYQFWINQDDRDVIKYLKYFTFLSKEEIDDLAEKVEKEPWKREAQRRLAQEVTKFVHGQEAVEEAERIS
KALFSGDVTDLSVAEIEQGFKNMPSVDVENKKENIVLWLTDNGIESSRRQARQDVSSGAIRINGEKVDDVDAEIDPQAHF
DGKFVIVRKGKKHYYLARVK
>SEQF1778_EEI64591.1 hypothetical protein HMPREF0534_2085 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTAITKDEEVILVVSGWTFRKQVVTVNFANAVIRITLTESFSI
>SEQF1778_EEI64592.1 hypothetical protein HMPREF0534_2086 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKMEKQRTLPMKEFYLSLKELVKPNYLKAMWPVAGVSIIFIALAAILALLNSNIAASLSMTMMMVMYGMASPVAILFSLL
EIVGIVAIIAALAFFYTFFAVATQYTYQDKMAHPEQPVSAGSIWMHYKHLRKNQVWRIILYIGLFTFLWSLPLNIVNALL
LPHLSGVAAVYTGWAIRILNDIVVLWKSIEYSQSYFLYREKQPQFLSQSMRYALTASRRFMTGRKWNYFAILFVLEFLPM
FIWTLIFGGLAFYGVYTATYVLTYIGIVLVVVGISCYLPVVYAILALYYNKARAGMEMDVLFKDTFKPVAELTGEAYVHE
VYVEKQPKEQPSPTVKRDDEKKHEAKKDE
>SEQF1778_EEI64593.1 phosphoglycerate mutase 1 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKLVLIRHGQSEWNLSNQFTGWVDVDLSEKGVEQAKNAGKALKEHGIEFDYAYTSVLKRAIKTLHYALEECDQLWIPEY
KTWRLNERHYGALQGHNKQKAAEKYGDEQVHIWRRSYDVLPPLLSADDEGSAAKDRRYANLDPRAIPGGENLKVTLERVI
PLWQDEIAPKLLDNKNVIIAAHGNSLRALSKYIENISDEDIMNLEMATGQPVVYDFDDKLNVLSKEKY
>SEQF1778_EEI64594.1 hypothetical protein HMPREF0534_2083, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
QGYRRVVDLDLKAYFDNVNHDLMIKYLQQYIDDPWTLRLIRKFLTSGVLDHGLFAKSEKGTPQGGPLSPILANIYLNELD
KELTRRGH
>SEQF1778_EEI64595.1 hypothetical protein HMPREF0534_2082, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
INNRFLRKEITKGQAVNDYSSAQIIATNNWMNHYPRAIFNGRSAMDVYCKAFYQETSRSHQPITNWSVLFISA
>SEQF1778_EEI64596.1 hypothetical protein HMPREF0534_2080, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
EQELAEKITKLDEEIKQEPKIIKGGSVRKRRRRFLKSFVTN
>SEQF1778_EEI64597.1 hypothetical protein HMPREF0534_2081, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMNRELKPGYNLQIATHKQFVLDYGLFSNPTDTRTLVPFLTQFHA
>SEQF1778_EEI64598.1 hypothetical protein HMPREF0534_2079, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
GSIGALKAMGATKLGLTDDELPPLVQMWRNASPHIVQFWWDVDKAAKECIKTHLPQTTHGMKFIYRSGCMFLRLRSGRYL
CYPQPKIGINRFGSESITFMG
>SEQF1778_EEI64599.1 hypothetical protein HMPREF0534_2073 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLELHLFVNPLGMRCLRCEKDVLKIDRDLNTKISYQFVPLFNMKTIDSTLKYYHLNPHDLAARQQVSKTLNQIILDYKAA
LFQGRKRGRHYLLQLQSALINQGLDYNDELINKIAHGSHLDLEMFFEDRQSQLAKQAFRQDQKIASDLGVSETATAVVFN
TEDSDYGLMIPNFDYNTLINAFKSGKLARSASLDEFVNQYRPPKLQIIQNNN
>SEQF1778_EEI64600.1 putative dipeptidase B [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQHTCTMFLAGKNATIDGSTIVCREEDYSNAFDPQRFVLVKPERQPRKYQSKTTDFKIDLPVPKLKYTSTPDADDKDGIF
GAGGINGLNVAMSATETITTNARILAIDPYNTLSGIGEEDFVTLVLPYIKSAQDGVKKLGSLLEKYGTYEANAIAFSDNN
EVWYMETIGGHHWAAVKIPDNAYVIAPNRFNITNFDFDSPNTMSSPNLKQWIDQNKLNPSEDEYNLRHICGSATATDTVY
NNPRAWYVQQQLGTINANPQSNNLPFICYAKEKLTVTTIKKLMSSHYQGTAFDPYHLERDKAPFRSIALNRNLELHILQI
RNNVPASIAGVHWLAFGPNTFNAVVPFYANIDDTPIPYRNTSTEYSIDDMYWLTHTIAALGDQNYGQAQNIEENFELQVM
AKTMNVQNNTDKEIAEHQDVSAFLTTINNRMAETAVDESKKLLGKLVKLAFSRERLQF
>SEQF1778_EEI64601.1 competence protein CoiA-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIAVHNDQLVLAENAKSDMAYYCPGCGQGVILRRGKHKITHYAHKKGNDCGFSEGETLEHLKGKEQIYQWAQKHHWNPQ
LEVYFPTITQRPDILLEINGQTVAVEFQCSPLSLEKLLARNEGYRQLRIPVWWILGSPYLRNLGNKKIVQFTQIFRRQFV
LLFWDVKRAQLVIDQKYWRCSYSRLKYDKKTILMEQIEMLKKKQYHFPNKEIRKLSLTALKLTGHALSECPLVCHDLIAS
WPAMSIPMIIWRIGVILEIEKFPLFYSWGDKEWKRLLMKVNKSNWLFPGCLPPETIRNIIINQYTNELIAFKVICRRDNH
LILIHRPRWFNDSQLKLQLVKRRS
>SEQF1778_EEI64602.1 negative regulator of genetic competence (MecA) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEMERINENTIRVLVDNDDLSARGITILDLLGDHQQIEDFFYSILKEVDTDRQFQNNDAVTFQVMPTNNGLELFISKNDS
NFAGNEQHGPINDQVSKYIKQHLIQKNSQDQDQRKTAINDSEDNEIQHTNWQVITFDSFEDLIDFAKIADNDDVSSYLYK
YNDLYYLAIAYSDSILNSNDVKDQLALAYEYGNPTATTVDFLSEHGKKIMSVSALHLIRHYFE
>SEQF1778_EEI64603.1 regulatory protein spx [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVTLYTSPSCTSCRKARAWLKEHDIAFKERNIFSEPLSLNEIKNILRMTEDGTEDIISKRSKAYQKLSIDLNDLSMKDLF
KLISKNPGLLRRPIIIDDKRLQVGYNEDEIRRFLPRKVRELELVEAQEKANMI
>SEQF1778_EEI64604.1 hypothetical protein HMPREF0534_2078 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTKISLTFGSRQILQSIIDKYPERHFKLMQATTHTRKLALFDLSGKDTIFQSPVKLTTLDSTLDAQLNGMFYYQSFQVN
GDRQKLLYNTLQKVLTEPANMNGGYMLSVDNKAEATTLVLLTAWADFEALTAWKESDTFTSLKNFTSMGSDNSYYDEIYK
PIF
>SEQF1778_EEI64605.1 pseudouridine synthase, RluA family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEFNWIYDHRTPRKLRSALKMYGVSSSLLKVAIYHGGKMQINGVDKWAVDTVNYHDKVTLILPPETANDNVDISEAPIDI
IYEDQDFLIMNKPAGVATVPAHNVPVADSLVNRVKGYYKRQNYENQVTHVATRLDRDTSGLVVFPKHRFAHAVLDEQLKK
HLVKKNYLALIKGKVPAEHGYIDAPIQRDPSSFVKRMVGKEGKASVTEYWRQECNVQASLIKIRLHTGRTHQIRVHFASL
GFPLIGDKMYGEESGLIARQALHCYWLSFYSPFKGENITVLAPLPSDFKNAKDDLLSAKEY
>SEQF1778_EEI64606.1 NAD(+)/NADH kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRIGIYNNETAESQRVTKVLKTEMKRAGLTYVEKNPEVVITIGGDGTLLSAFHHYQKDLNNIRFVGIHTGHLGFYTDWRS
FEIDDLVDSLVKDSGQAVSYPLLAMKATYSDGQIENYIALNESTIRNVTRTMVCDVFINNHLFENFRGDGLCISTPTGST
AYNKSVGGAIVDPNSVGFQLAEMASLNNRVFRTLGSPIIFGADAELILRLRDENGHVLTCDRDQWMLKSEKERYLTELSY
RVSKQRIYFAQYRHNNFWNRVKDSFIGGVH
>SEQF1778_EEI64607.1 RelA/SpoT domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEDWQHFLLPYQQAVNELKVKLRGMRKQFQDQTQHSPIEFVTGRVKPVDSIKEKMIRRHVQEDRLEQDMQDIAGLRIMC
QFVEDIYKVVDLLRQRSDMTILEERDYVTNVKPSGYRSYHIVIEYPVQLITGEKRILAEIQVRTLAMNFWATVEHSLNYK
YQGEFPEELSARLQRAAEAAFKLDNEMSEIREEIKEAQTLFSKRRSTNSIDEDELKE
>SEQF1778_EEI64608.1 hypothetical protein HMPREF0534_2068 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDKFKTGNPIWVYYNDIDSGANLTVPQLLRGFIGQEYQIEQKQFPNYRYVKTEGETKGTFDMRQRIVHLFYRKQNWGEV
QSIEMYLHLDAPTQVFDTAGGMPVGAPLPADITVKSFHRVATKNGQFWYEIGADQWIKYDQMHVVDNPFNQDIRKEKSKL
INNLTVIPLKNVHAKVDYLHNKSINVYDAPYGNKVAEIPNGETITLIGKLNDNDEITWYQVGRKKYITSNYIQIEYPEDD
E
>SEQF1778_EEI64609.1 hypothetical protein HMPREF0534_2069 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNQKRNLVISTMFQQAGHATGIALGWGLGIALITYLLGLIISHNLESFLVSLQALPSIASSILSVLLMAIFLVTPYTDF
KWAIQNGISRKTLWQGRILSLFLMTLVVWFIAQLVGLMNTPFDLVSAWHSLLWYFGFSLTMMAIGNGFALLNRRWKWIVG
IGLPMACLVLFMMLAYSLVGLIPALSASGVFKSIIISNVTGWVILVIYLIIVYALARFFNNKIQLRRD
>SEQF1778_EEI64610.1 hypothetical protein HMPREF0534_2067, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
NKPIQIYLGEEKMAKTRHQQIRHNTTLAIFIAIILLQDFVPFFGNIPLGPLSITTLHVTVIIAAIVLGPVDGAIIGGIWG
LLTWVRAFVAPSSPLAPLVFVNPLVSVVPRIMIGILAGYTFILMCRLVKAKYIAAVSAAIVGTLTNTGLVLGFIYLFYRT
PAVAQTYGVNVNHLLIALETVMATNGLAELILAIIIVPMVALPVLEVRRRLEVN
>SEQF1778_EEI64611.1 hypothetical protein HMPREF0534_2058 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKESELLVIIKRLIAMQNDDSRDRQKRTFEKFGILLCDVTYIHSREEFIFVRYRPYERFRFDDIDLVAIEVFNCLYDLEN
TF
>SEQF1778_EEI64612.1 hypothetical protein HMPREF0534_2059 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIIGVGILGYSLRNSNIHLLLQDVSAINWGWMLVALGCICLYLGLEAVVVKIFMNDRHDGFTWKDALRLPLIEQLFNGI
TPFSTGGQPAQLVAMIQSGVDGGLASSVLLMKFVVFQAMIVVNFLISLLIGFHFIAEKLHALSLLVIFGFLIHLAVIVGL
LMVMYWYSFTKRLMNLVIKPAAIFMKANRYEHMKVVLNEKVDTFYQESLRMKQDYKKLLKVCVVTIFQLFFYYAIPYFIM
LALGIDHINFVMVLSLHVLIFMIISLFPIPGGAGGAEYSFSVLFASFIHSNTKLVLAMILWRLLTYYFGMFAGIVAVFIK
PDKVKR
>SEQF1778_EEI64613.1 glycosyltransferase, group 1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMIKITMFSSADKVAGQGVGSAYLELINLLRNQCSDKFEIEINRYGKSQISHYHTIDPLFYLSTFSKKRGRKIGYVHFLP
ETLEGSLTIPQPFRGLFYHYIIAFYKRMDQLVVVNPSFIKQLVAYGIPEKKITYIPNFVDNDRFHPYSAVKRTALRKKYG
IAADKFVVLGSGQVQERKGVPDFIRLARQNPDVEFFWAGGFSFGRLTDGYSELKKVVDNPPANLHFTGIVSRDKIAELNN
LADLFLLPSYNELFPMSVLEAFSCGTPVMLRDLDLYHSIVEGDYEPAKDVNEMQMKLTLLRNDPARLAHWQTQAQRAAKE
YSKEHLADVWTKFYQEQARKGDA
>SEQF1778_EEI64614.1 glycosyltransferase, group 1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNIGIFTDTYFPQVSGVATSIKTLRDELIAQGHHVYIFTTTDPKARHDDVENGIYRFASIPFVSFSDRRIAVRGVFRAIK
LAKKFQLDIVHNQTEFALGVMGKTVAKYLHIPCLHTYHTMYQDYLHYIANGHILKPNDVARLAHLYLKNISGIIAPSDRV
LDTLTSYHVESPIRVIPTGINLRVYSKRDSAEEIANLRAKLGYSEETPVLLSLSRLAYEKNIHSLIEAMPDILAHKPDAQ
LLIVGDGPARHTLERQVREMQLNDNISFAGEISNDEVYHYYQMADVFVSASDSESQGLTYDEALASDLPIVVMRSEYTDQ
LIDDPAIGISFQKRADLVKGVLFYLNQPKNSESRLRRQQKLHEISAEVFVEKVVQFYRDCQKDMAVHDELNQAEKSHRLF
HRPRS
>SEQF1778_EEI64615.1 phosphoenolpyruvate-protein phosphotransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSILLTGLAASSGITIAPAHLLVESDLSIKKQHTADENHEVARLHDSFALSKTELQHLSKRAHELLGQRAVTIIDTQIAI
LDDPTLQKKIIDRINSHHDTAEWAVKRVEDYYLSIFERKNDNEYLYARATALRDVTKRVLSHLLNVPLPDPGLLDHRAIF
VANNITPTDTAQFDKRYVAGIVTTNGGRTSHFTIMSKTLSLPAVVGVKDATAIIHDSDLLIVDGIHGKVIVNPTKEEVEH
YRLLAVKFIQEQQKWGALKDKQTVSADGRRFEVGANVGTFADVIDAQEDGAEGIGLLRTEFLYMSKDELPTEEQQFNAYK
RFVSAMNGQRVVARTLDIGGDKKLGMVALPHEDNPYLGFRAIRIGLARPEILRPQLRALLRASVYGRLAIMFPMIATIEE
FQAARAILDDEKEKLEQAGIQVAKNIEVGMMLEIPAVAVMAEHFAKYVDFFSIGSNDLIQYLFAVDRGNQQVAYLYQELH
PAVLRMVRQVIEAAHAEGKWVGMCGEMANNPYAVPLLMAMGLDEFSMSSSQILRVRSLINQLNTRKLQPLVHRAIHAETA
AAVQELVEKYVPQVKL
>SEQF1778_EEI64616.1 phosphocarrier, HPr family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKREFTITSETGIHARPATILVQAASKFSSDITLSYEGKSVNLKSIMGVMSLGVGQNAKVTITANGDDEKEALDTVAET
MKKEGLTD
>SEQF1778_EEI64617.1 hypothetical protein HMPREF0534_2064 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEENFEQLLDDLRNKKIDHFVITPENFQQFQPIFHSYAYRSQIKGEAQRGGKVIYQLRER
>SEQF1778_EEI64618.1 hypothetical protein HMPREF0534_2065 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKIALYLRKYLSFMACFAIKSKYNINQWSRKVKKFLMELFRRY
>SEQF1778_EEI64619.1 ATPase family associated with various cellular activities (AAA) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQCQYCHQNPATIHLQMNFNGQRIQIDLCQNCYQKLQNLQTDMMNGGNGMNNFGFGSLEDFMNAMNNMQSQAAGANGQNM
NGQSQRQGGGRNGKGILGQYGINLTDLARQGKIDPVIGRDNEIKRVIEILNRRTKNNPVLIGEAGVGKTAVVEGLAQAIV
SGQVPEKLANKEIIRLDVVSLVQGTGIRGQFEKRMQQLMEEVRKNKNIILFIDEIHEIMGAGNAEGGMDAGNVLKPALAR
GDFQLVGATTLNEYRKIEKDAALARRFQPVEVDEPSVEETIRILNGIKNRYQDYHHVKYTDDAIVAAAKLSDRYIQDRYL
PDKAIDLLDEAGSKKNLTLKNVDPNAIENEIHTAEAHKQQAADNQDYEKAAFYRDQVAKLEKAKKEAEENHTEDSATVTV
KDMQRIVEERTNIPVGDLQKQEENQLRDLDKKLDEHVIGQTQAVDKVARAIRRNRIGLNKSGRPIGSFLFVGPTGVGKTE
TAKQLALQLFGSKDAMIRFDMSEYMDKTSTSKLIGAAPGYVGYEEAGQLTEQVRRHPYSLILLDEVEKAHPDVMHMFLQI
LDDGRLTDSQGRTVSFKDTIIIMTSNAGTGDSEASVGFGAESNGSTHSIIDKLTNYFKPEFLNRFDDIVQFNALSKDDLM
KIVNLMIDDVNNMLADKNLHIEVTNNVEEKLVDMGFDPKMGARPLRRVIQEQIEDRIADYVLDHSDAHKLVAKLDDNGDI
VVEETDEVPTIAKK
>SEQF1778_EEI64620.1 polyamine ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMIGETLMVKNIMEFQHVSKQYDDNVVLRDISFEIEAGKFYTLLGPSGSGKTTILRLIAGFDHPSSGKIYFDGKQINDIP
ANQRQVNTVFQDYALFPHMNVAENVAFGLQIKGVKKAEIKQRVKEALHLVQLDGYDDREITAMSGGQRQRVAIARAIVNK
PKVLLLDEALSALDHKLRVQMQTELRQLQRRLGITFIFVTHDQEEALAMSDQIMIINDGKIQQSGTPVDIYDEPLNHFVA
DFIGESNIVPGIMKKDYVVSINGQDFDCVDAGMKPNEKVEVVIRPEDLDITTVEKGKLVGTVETQLFRGVDYQITVIDQR
NHKWKINSIHKTKVGAKVGITFDPEDIHVMRYNESEEDFDARLDSYEEGD
>SEQF1778_EEI64621.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRQKAMFIVPYALWIILFVIAPLVLIFYQSFFNINGQLTLNNYAEYLTSGVYLKMTLNSVWYAFLITLVTLVISYPTAYV
LNRLPNKQFWLLLVILPTWINLLLKTYAFIGLFSRTGTINGFLQFMGLGSHQLLFTDTSFMFVAAYIEIPFMVLPIFNNL
AEINPSLINASYDLGATHWQTFRRVIWPLSMPGVKAGIQAVFIPSLSLFMITRLIGGNRVITLGTAIEEHFLTTQNWGMG
STIGVVLIIAMFIIMFMTGDKKQKGGRH
>SEQF1778_EEI64622.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKQRWSWGKAYLALVFVILYAPILYLVVFSFSSGQTMEKYHGFSWQHYADLLADTRMITIVINTLLVAFLASLLATIIG
TLGALAIKDARRPWKNSLLSLNNVLMVSPDVIIGASFLIFFTMLGVRLGFVSVLLSHIAFCIPIVVLMVLPKLNEMSPTL
VDAAYDLGASRWQVLSRVVLPSIAPGIFAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARQGINLEINALSTLMF
IVSLLLVIGYYLISKRGGRRTRIVAVKEGDAQ
>SEQF1778_EEI64623.1 ABC transporter, solute-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKIFTAFLAIVVICILLALGDVAFNQQKTGGGKQTLTIYNWGDYIDPALITKFEHQTGYHVDYETFDSNESMLTKIRQG
GTNYDVVVPSEYTVQRMKKEHLIAPLSHQKLPNLKYIDPQFLNRSFDPDNRYSVPYFWGTLGIIYNDQKVNGKDVQHWEQ
LWNPRLKNNVMLIDSARDVFAVALITQHHSVNTTNYHQLKLAQAHLKQLTPNVKAIIADEMKMYMEQNEAAVGVTYSGDA
REMININPHLHYVVPSEGSNIWFDNMVIPKAARNKKAAYEFINFMLDPQNAAQNAQYVGYATPNKAAKKELPKKVTNDKA
FYPPETTMKHLQVYRDLPLRVLGEYNDLFLEFKMFAK
>SEQF1778_EEI64624.1 hypothetical protein HMPREF0534_2054 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MWFTKNKRQSDRRLLMKEILAINHEFVARSYILFPTLLFAFSIIAHANIITFVWSFIFVYTVEKVMPFILDGRLNLASWS
GVTKFCSVIAFIWGNPCFYWNLFSL
>SEQF1778_EEI64625.1 hypothetical protein HMPREF0534_2055 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAAILIGFGVTGLKLLGDPNKEISGIDLKRVNVIAGFSVIIGLIALGILLMKLPLVVGFVFYTFFLGLEVIYAYVVVKRD
KTPLDLKFSFNLKTAFPAIAVLTVVFIISFFKKTGQISDFG
>SEQF1778_EEI64626.1 hypothetical protein HMPREF0534_2056 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLAIIGIILELRNILGQPFKLFRIWLGAIKNYVIIYTLLFAFQQNKAY
>SEQF1778_EEI64627.1 hypothetical protein HMPREF0534_2057 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLSGMLVGALSPKLQKIPLTTRYKTTLICLTLGLFLTYTDYLYLLGTAITVFCDILLGKWARKQVPDKYSSID
>SEQF1778_EEI64628.1 Inosine-uridine preferring nucleoside hydrolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKRKMILDLDTGVDDALAIAYALADPEVDLIGIVSSYGNNLLDVCAENSLKLLELLGHTDIPVFKGLPHSCTTEHFDVM
QVSKDIHGDNGIGDVELPAPSRALEEQSGVDFYIEAAHKYGKDLIIIPTGPMTNLAAALKKDPEIADLIGNVTFMGGALT
VEGNVTPVAEANINQDPKAADEVMKSNLPLTMVGLDVTLRTLLTKNETKQWRELGTASGKAFADITDFYIDAYYNLDIDK
RGCALHDPLAVGVGIDPSFVSTISLFMKVVYQEGPYYGRTIGDNAKLNDPNPNVKVAVNVDKERYLKAFMDHLNKLFKEN
>SEQF1778_EEI64629.1 pyridine nucleotide-disulfide oxidoreductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEKIYDVTIIGGGPAGMFASFYCGLHELDAQLIESLPQLGGQVGALYPEKQVWDVAGMPGVTGHDLIAKLEEQMAVAPI
DQFLGETVEDVIKKDDGTFTIKSAKRVSRSRAVIIALGNGAFTPRKLALEGAAEIEGKQLSYFVNHKADYADKRVAILGG
GDSAIDIALMLEPVAKEVHLVHRRDQFRGLEHTVTQLKQSSVQLDTPFLPRALTVEDDETVTLDLKKMRSDDEAQLNVDK
IVVNYGFTSDNAALNQWSLDLAAERNLIKVDSMMETSVEGVYAIGDGVTYPGKVALIAAGFGDAPTAVTALAKKLYPDKR
MAMHSSSMGITK
>SEQF1778_EEI64630.1 hypothetical protein HMPREF0534_2039 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLALVCPNCGKINALGSRECSVCHTKLSQGNHQLVSRKITPRKK
>SEQF1778_EEI64631.1 hypothetical protein HMPREF0534_2040 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTPNKTEALEFRYFDKDKKVLYNDYYIFNATNTLLRQHFSIAYIGRDAQGARPLKVVSLKKAKKLYRQNKHYSLYVRKRN
AIVNGPQRVIIRDGAKTISMNPGRHDKIYQRERDSCVVKGNKQVKFIKIQTLILIDNYN
>SEQF1778_EEI64632.1 hypothetical protein HMPREF0534_2041 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MCKKLPENYEKALEKWEKMTITSDPMFGMVMQNKEICLELINRALPHLKATQIVQLTTQKDINVVAGRRVRYDVYV
>SEQF1778_EEI64633.1 hypothetical protein HMPREF0534_2042 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQVADRQNLPYRLRYCQEQIDHGLLLPGKDYRDLSLHPTYVLMFCDFDYFGYGWARYVFEMACTCNHQLKLGDQRTVVIF
NALAKEFTKDEQPIKDFLALMRNRVDNKSKFITEIQDEIIKIKQEPERRRGFMKFELDLMDARREEREESKQKLVKFLAS
QKTAPSEIVAALVNVYQMPEKTAREYVAEHVKTPK
>SEQF1778_EEI64634.1 HAD hydrolase, family IA, variant 1 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKMAQKIENFIFDIDGTLIDTIDMYMPAMIDVLAQHGHPVAPDKVEQTKHDLFGITGQDALRLAGISEDEIPAIQQDWF
KLAYQRADQVKVIEGIPEMLNTLANREDARIAIATSKLADEYQEYFVNKYDFAKLFKVAITSADTKKHKPAPDPILAAMD
KMGADPATTVYVGDTINDMKAAHAAGAKFAGALYSSANPDSIKDADFPLMKPADLLEI
>SEQF1778_EEI64635.1 hypothetical protein HMPREF0534_2044 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLSAVAVLLCTAITVSLIALCYADLSSRFTGLGAAWLYSYHAFGRFTGYELGIFTWFLGCCTHSAEIVALLTTLKNFLP
IFNRPLIYGAAAFGLIVLFAVINFFGHGLVKLVNNVSAAAKILTLIIFIVVGVFFIHKANFSPVIPQAALKGPMSFIHHF
GEAFTPIFYLFTGFSFLPIAAKQMKNPEKNIPRVLIAVMVSVTILDALMMTVAVGLSGTKLGGYSTPLANALGGALAKGL
GTTIGKWGYAFIIFWMLVSIFGVAFSSSFNTPSLITSMANEHGMLPKFIGKKNKHDAP
>SEQF1778_EEI64636.1 hypothetical protein HMPREF0534_2045 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVTNFTAKTLLVGTVIAILAAAAYFFIKKDRSYEEKHVEWLDDL
>SEQF1778_EEI64637.1 ferritin-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYQETKETLNQLVADLSQMAMIIHQTHWYMRGTNFLKLHPLMDQFMDEINDQLDVISERLLTLDGEPYSTLKEVATHTK
IKDWPGNFDKTTPEQLAHLVAGYRYLEDLYQHGIEVTDIEKDYSTQDIFIGFKTAIEKKIWMLQAELDQAPEIDN
>SEQF1778_EEI64638.1 putative protein MraZ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLFAEGVGPLSISYFTQFIYLRGKMKENYQLTTDEIKKEYQLTDFTHGLSTQSVEKRLADEGRNIIEVKPTPKWKLFLRQ
FNNIVIYILLAATLLTVLIGHYTDAIVIGAVVILNALIGYFQESSAANALAKIKEMMAQHATVYRDGKRQDIDAADLVRG
DVVFLEAGDNVPADLRIVSADNLRIEESALTGETNSVIKTDEAITDQDVPLADRVDMAYASTSVTSGSGLGVVVATGEQT
EIGKISQEVAQIKPKKTPLTKEIDHVGKVVSYITITASVIVFVVGFFLEIYSLPALALAVVAMLVGAIPEGLPAITSVIL
AFGISKMAKEHQTIIKSMPAVETLGSVDVIATDKTGTLTKNEMTAIELWVGDKHYTVTGTGYAPNGEILLNGKPAQLTDQ
LKLFLEAGYQANDTALTDEDGTWHINGEPTDGAFLTLYHKAFGAKYQSPYKAVDLLPFDSDYRYIAELTRDPEDKQQVIF
VKGSPDKLFEMAAKEDPQFDTAKWQQRVDDWSKAGKRVIAVGYQPVNGKNLIEVEHDHLYRGIHLLGLAALQDAPREEVI
VALKQMNRAGVSVKMITGDDPQTARAIGKQLGLSTGPINAITGAEWDKLSASEREEAALDNQVFARTTPQNKLEIIEALQ
NRQKITAMVGDGVNDAPALKKADIGISMGIKGTDVAKDAADMILGNDNFAVMAAVIKEGRRIYDNIKKSILFLLPTSFAE
GLVVAFSILTGQQVPLQPAQLLWINLIAAITIQFAFVFEKAEKGIMDRNPRPVTQRLMNRHDLIQMGYVSALMALFALIG
YEWFISAGADVVNATTMMVNTIVISKAFYFFSIRTERYGLKEVGNIGKKAWGVIGLMILFQLIFTYVPFMQAAFHVTGIS
LLEWLAVIVFSCLIFLCTESDKMIRFRLNRR
>SEQF1778_EEI64639.1 proline-specific peptidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQGTKIITLDNGYHLWTNTQGEGDIHLLALHGGPGGNHEYWEDAAEQLKKQGLNVQVTMYDQLGSLYSDQPDFSDPEIA
KKYLTYEYFLDEVDEVRKKLGLDNFYLIGQSWGGLLVQEYAVKYGQHLKGAIISSMVDEIDEYVDRVNELREKTLSPEAV
AFMKECEAKNDYSNPKYQEYVQVMNEQYVDRKQPSKLYHLKDLGGTAVYNVFQGDNEFVITGKLKDWHFRDQLKNIKVPT
LITFGEHETMPIETAKTMNSLIPNSQLVTTPDGGHHHMVDNPDVYYKHLADFIRNVENNTFNN
>SEQF1778_EEI64640.1 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKINQFSITSTTPQARRQELMQIHLLRKNEEQNLTPNAIFEIFLARIHMASAQPIITKQWLHDLLATPDLALDDWFDQNQ
ILTDEVFYLVALQLLDFEAAVDFDITDPLATVKKIGLPVESHQKWTTANVTDAFYLLLNTHNKNGQSLIDHLTAEGFMAW
SYQLPAEQKPLFFNGKPLASFDPAKFIREVVYIETDMDTDFDGKADLVKAEIMRPIESDHGLKVPVVFTASPYNQGTNDE
WGEKATHNVNLPLKHKDPDYQAPTEEKFPTDFSRQKVTGESRQATETFSTTPAYTLNNYLAARGYAVVYSAGIGTKDSDG
LQTCGSPEQTDAMKAVVEWLHGDRQAFTDRHSGTTIKAAWCNGKVAMTGRSYLGTLATAVATTGVPGLEAIISEAAISSW
YDYYRENGLVRAPGGFQGEDADVLADETFSRTKRPADYRRIEKVNDKYIAKMQGAMDRTSGNYNEFWDHRNYRHDLENIK
AAVMMVHGLNDTNVRPSNVKALYDGTQSLPITSKLILHQGQHIYINAFRSLDFSDMVNLWLANKLWGQENHADDTLPSVL
VQDNSTPETWTAYDQWTAGEQKQYQFNDHRLANLPGLGIQSFNDQQPEEKYLQWCKQPQAWAKALVNDNGQFSRRFVTAV
FNDDTLLRGTPTVTLKVASSKNYGMISARLVDLGSSKRLTMSPVLFNRNGLELGYHWKTDDLREFKLAKEITNYKVIASG
HINLQNRNNPAQVDELAANQFVTVKFDLQPIFHRIVAGHQLGIIIYSTDYEYTLRGNERIEYQLELNGCHLDIPGFSVLA
>SEQF1778_EEI64641.1 lipoyltransferase and lipoate-protein ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTSHNIGMNLATEQYLMNNKDFGKEPLVLFYYEEPCIIVGRNQNTLEEINHDYVKEHNIRVTRRLSGGGAVYQDLGNLCF
SFVVPSDSEEFGDFKSFTQPIVNVLHQMGATSAEVSGRNDILVDGKKFSGNAMYSRNGKTFSHGTLMLDVDLSVVADALH
VAKDKIASKGIKSVRSRVTNLRPYLDEKYQDIDVPTFRDELLKGLFHVDDLEEIKDKQYVVTPEDQKEIDKLYEQYYNNW
DWVYGKSPEFTVKRRKHFDMGTIDARFDVKDGVIKNVKFYGDFFGPQDINQLAEKLQGIKYDHDEIAKVLEAEGTQQYIT
GIPTAEVADLLA
>SEQF1778_EEI64642.1 hypothetical protein HMPREF0534_2016 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISTARADYRSDLASSLVVNFHDILNNVRINKEAVEKTKFFLSLHFTKLS
>SEQF1778_EEI64643.1 hypothetical protein HMPREF0534_2017 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNNEKVVIVTSVAAVIALVLDAFMFVQHGHSLTSSSVWPRLLLFIVLAIIVNGLSFLKMRFCGYATILVNLYFAIASLA
AFQMVSPRESAYGLFIQALSIVGILVGAAGVYYGAKQRADYTKAKIEKMKEQMKK
>SEQF1778_EEI64644.1 hypothetical protein HMPREF0534_2018 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKMSVADYLSQLTSDQVVTEEVEKTAAQSQQKTVLTTAINFMIEQLDTGHLGQYKMNIKMKKGDPVSFRLETNLINIPMD
EAERLDVKLLDKEIEYPVNLYLVMESEDINKTGLRIDELANETDQSGKTTDLITKTQEWVAEHLADIMEARA
>SEQF1778_EEI64645.1 hypothetical protein HMPREF0534_2019 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILAIFLHTIEFNFITITSILLTNIIGIYLSVIGFAIGLSFDAPTIDAAGTPILFIIATFIIPWKHLLPANSFIDFFTNV
QKLFPTYYLYDDLDHLSVSHLGLLFVTAIITLLPWLSFIYRKLIN
>SEQF1778_EEI64646.1 hypothetical protein HMPREF0534_2020 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIIAIQLKQVLRNRRFFLFTILLPGIWYVFMIQVASTSLPATGNFQLALLLLALLMGILGNSIVTFSKRICSNKDFYIL
QSHISHYSL
>SEQF1778_EEI64647.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPYSFPHQLLKLRTEKQLSQAELATRLFVPRQAVSKWENGDAEPSIDKLILLAKVFNVSLDRLILGTNDFNQPVVKLNNI
VKTFNSPVLNSLDLTIHNNERIALLGSNGAGKTTLVKIIEGALKPNKGTVKWYFSKNDSLNIMSQENILIPTLKVKEQII
LTAAITKVGSKQRINYLLDQFKLSSQQNTIIAKLSGGQKRRLSLLLSVLRQSKLLILDEPTVGMDLESIDYFWHFIEKVS
GSILVITHNFNQIDKFFSRVLLLKDGQISQDIPIKEIHQHNQTIEQWYRQHNR
>SEQF1778_EEI64648.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYRLQAIIFVFVAFMLGCNEYMIVGVLPDIAHEYHDSLGKLGLLVTVFALVYAIFTPIITSMANRWRRHHVLLVLMVIF
FIGNTWTAMAPNFISMLLSRILTASVAGAIISMVLVMASYVAPREKRASLVSWVFAGFSIASVIGIPIGTVISTTLTWHD
SFWMISGITIIVFVALIWLVPRDTPQFKSTLSKQFVLFKDSRIILGVSFIVAICAADYTIYTYIRPLITNEMGFDNIWLN
WLLFGMGIFFIIGNKFGGYLADRGGIHRLSGIYAAMTILFLIFGPVLPFKWGAIIIVAVLCIAFSCYGSSTQLMFLDIAE
KQYPQSLDLASSLNSIFANIGISLGSFTASQAVTFTAMKNLGYVGAVYGLIATILVIVLSKKYTGMRNY
>SEQF1778_EEI64649.1 PTS system Galactitol-specific IIC component [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQEINAIFQTFGASVVVPIIIFIIALLLRVQPKTAMMSAFYAGVGLTGFTWIITEFTPVVTKIVRQMVDNTGIKLPVVD
IGWQAGSLAAFGSTVGLSFFVFGLLTELILFALGVTKVFLPSNIWNNFGYMIWGTLAFYVTHNYWLSLGLEFFMLLYSLV
LAEIQADRWADYYGIENTTVDSLHNIEQVVPAIILDPLWNLLGFNKVKMTPKDFQKKLGVFGEPITMGIILGLIIGILGN
LSSLGKISAWGQITKFAIQLAAVMAIFPLVTNVFAKAFIPIANEIDEQQKKRHGENKNSRYDKKRWFLAVDDGVGYGESA
TLISGIILIPIMVLIAFILPGNKTLPVVDLIAIPYMIESIVAVTRGNILKVIATGIVWFSLGLYAASWLSPVYTAAVAHY
GVAIPTGVVLVTSFNLVARPLNALVFAAFISESPVWISLAVIIYLVMLFGLRKYRSQIWHYLNKMAMKNA
>SEQF1778_EEI64650.1 oxidoreductase, zinc-binding dehydrogenase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLGLIRSTIKLLKAALVLGSIAIQLAKLHGCKVFTTVSSSKYDYVKQLAPDTIINYQTEDVDKKLADLTDGLGIDLIID
TVGKKEAELDLWRLAYNGRLVTIVDVPSLDNVPMFDRGLGIDVVNLGGAHLSGNPYQQADLGRMNAEMLKLIANGDVKPL
IEKVIPFDQIIEGLTAIKNHEVVGKLVAKID
>SEQF1778_EEI64651.1 hypothetical protein HMPREF0534_2025 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNPKKLKQLKKRVKKAHQIVNEPSYIQELNTYRDLFDDFPPVKYLINNVLESDRLLKNGLLPQPLPKLLLPDNIQDAIFK
KVNEQFPQGDPRGDKLWNKYSEALPKLDKALRNYRDYLEETYGMWSYVNAPFANALSDYLGGAPTLEIMAGNGYISKGLR
NNNATQKIYTTDSQAWIKENETGKHPVTKIEKLDALEAIKKYGDEVEYVIMSWAPDKGEIDWEVLQLLRSTFPEVKLLVI
GEKDGATNSKKFWQEAQLSQDDELQKVNANLHSFDLIDEQIYLAK
>SEQF1778_EEI64652.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFPERLRALRKGQKITLKELATHLNENLGPNEKPNTASQIGNWERGIRTPSYVEARKLAEFFDVSLDYLTGKTDRDDFDL
AKLFFSSKNLSFNQTVLSSDDRYEIFQLIDGYLKGRHNRRDTDTFYGKQEQLDLKLK
>SEQF1778_EEI64653.1 hypothetical protein HMPREF0534_2027 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLIILETKTKKKRRHPWRWLIGIVVVIAVAIFAASSYFFSVAMVPGHKDFINNSTKISRNDPLYEQKMWFKHAKKEKWT
MKSASGNYKLVADYIPAAKPTTKNVVIAHGFMGNKEKMGEYAALFHQMGYNVLMPDARAHGQSQGKYIGYGWPERYDIRK
WINKLIRHNGEDSQVVLFGVSMGGATTMMTSGINLPSQVKAFVEDCGYTSLNDELNYEAGNLYGIPKFLRVPLISTMSLI
NRVKNGFYIHEASSLNMLHHNHRPMLFIHGAKDNFVPTEMVYRNYRATEGSKELWVVPGAAHAKSYATHPSEYRRHLTKF
LDHYIK
>SEQF1778_EEI64654.1 hypothetical protein HMPREF0534_2028 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLAIIVTMFVAIEHLGIMALEIFGNPAQQAKAFDLPLKFTQQHEARVSFANQGIYNGALGAAIIASYWLFSGATLVLVWR
MLLVFVMVVALFGALTATKKIILIQFLPALIAFLLTFL
>SEQF1778_EEI64655.1 putative Na+/H+ antiporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEMILGIVLLLTAVVAANVVHLVYPKIPLSIYQIIAGILLASLPTEATNFTMHPELFMMVIIAPLMFNDGQNQSFRYLSS
NIKSILSMTVGLALVTVLITGSFLHWLQPGTFSLALAFMLAAIVTPTDAVAVKSITTNMKVPKNVNGALEYESLFNDASG
IVLLDLALETYRSGQFSLGHGIWIFVYVFFGGIIFGAVLGSLLISLRTSLMRKHVDIGSIVIPINVMTPIVVYWLAEELH
LSGILAVVAAGVVHSILYDRMRLTSTKVQMSTTTIWNIISDALNGLVFVLLGVMLPPVLGRTSWQNLGAIVALAFAIYII
TTLLRFLWVRFKLVNIQSTNLNRDSLLMALGGIHGTITLALAFSLPVLINNHQFAFRNSMILIAAIVILISIAVGAIGYP
IILPPKSKSYSKSEFQKELIKTVQYAINELRTSEKYSPEKAVVIDQLSSQMTQYHEFNRNVYSQLMGKAHQIELATLDRL
NEEGRISDKEAKFLVNFVTRSIFRVNKHSFLELWIILWHRLKWRFIRYRHLKKGSRYNVGPKYQLTKEQRAETAEILEII
NREIDKYLHLIETPQNANEVAMVRRTYFQRKRFFLHDISMDTDLITSLFIEAFQLEHSYVQMQLADDQFSQELANALNEQ
ISTDELVYTQSLD
>SEQF1778_EEI64656.1 hypothetical protein HMPREF0534_2030 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNDNNLTDRIVNALSYLSILFLPVIFPLIVWIIAKSSDRPTIAKNARYAFWSQIFPLLYVIGAILVFSVFSLNPANFHGG
ALFGILLTFALLLALLLFIYNIAMAVKMLIGRE
>SEQF1778_EEI64657.1 cobalt transport protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLEGVMNPSLKLLLVILLSLELTFVTKLWINLIVIVMCLLILIHQRFHWRQFCWLAFVPLFPALAIFITIVFFSPSHSFF
DGTVLFSRLYVYVCLGTVFTFTTDTLTLARSLEQNCHLPSKYAYGVLAALNLIPKMKQAVTTIYTTGQMRGVNLHWWSPT
LYFKAILVAIQWSDQLAQAMESRGFVEGQARTATVNIPITSHDWLSFLSIICLVQIIVIALP
>SEQF1778_EEI64658.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNIQFNDLSFNFDQQPILKNITAKFTVGKIHLLTGVSGSGKSTILKLIAGLLPKYGGEIVAGAVDVPTDAHIGMVFQDP
LMQFALDTPRHELEFTLENCQVPTDKIPERVKEALQFGKVDDLANRLITTLSGGQQQRVALAAATAMQPNVLLLDEPFAN
IDEENRQLILKQLVRLNSDYHTTIIITDHDLHGYERLHPLVWQLTKGHLAQLSSKNSSQLLTASATPQITTTLPPSTLPT
IIKFDELAIKRENYSLLLPTNLGIVKNKITLLTGPNGIGKSTLLKAIARLLKYEGKIDYAEENIQKISPGKYYKHLGLIF
QHANDQFLNVTVGEEVALGFKTCQNPYFNQQQVNEALAALGLNGREDQVVYSLSGGQKKKLQILLMLMRGQETLLLDEPF
TGLDPTSLKTVLQLIKASQKEKPQTLLIVSHQLSGLDGFIDYHLTMNHQRLNYVGGSYES
>SEQF1778_EEI64659.1 hypothetical protein HMPREF0534_2033 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKRSLHLRDIILLALIGIIFGVIYFAASFVYNGLTVLLTPIGYGPMANDLTMGIWCMAGPLAGFLLRTPGAAFLGEFLG
AAVEMLLGDQWGAANLISGAVQGIGSELGFTFTFYKMYNWLTLLISSLTLTFVTFGWDWFRNGYNHFSGQMLIIMLIARF
ISMFVFSGILVKLITNLLQRAHLIKH
>SEQF1778_EEI64660.1 hypothetical protein HMPREF0534_2034 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSGVVFVLLLLGIGILSGIISAAAGLASLVSYPSLLALGLPPVMANVTSAFSTVTGNYSSVFSSFKELEHNRRQLWIILP
LVFAGSIIGAFLLFAVPSKWFAELVPLCIALAGIILLFPHHPKQSTGTMVGNSKLFGKSRIGQFLSIIGIFIVGIYSGFF
NAGAGVLMLTLLTVINRQKSFAVNNALKNVAMTVTNTTSWIVFALETTIYWNYVIPLMIGNVIGGYLGPIIVRHLPGRLM
QIIVGIGSLILAISLVIRNLM
>SEQF1778_EEI64661.1 oxidoreductase, short chain dehydrogenase/reductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDEGQKVADQLGDNAIFIQQDVARKGDWDRVIRQTVQVFGKLNIVVNNAVIAEYADVEKTPAEIWDKTIAVNLTGTMWDT
KLGIEAMKNNGEKNLIINMSSIEGLIGDPDLFAYNASKGGVRLLTKSAALDCARKGYDIRVNTIHPGYISTPLVDNLVKD
DPKAEGHLESLHPLGRLGKPEEIANLALYLASDESIFSTGLEFVADGGYTAQ
>SEQF1778_EEI64662.1 hypothetical protein HMPREF0534_2036 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGRLDNKVAIVTGGSKGIGAAVAKKFIEEGAKVV
>SEQF1778_EEI64663.1 hypothetical protein HMPREF0534_2011 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVNTFPPILRDTTFSMSLIHFAEKYFPLYQLGFSWLPFTLVGLFISICIWYLQQRSRV
>SEQF1778_EEI64664.1 ROK family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQRQYLSIDIGGTEIKSALIDHSGNIFERNHVPTPHQKEAFLAAIFAVVEPVLEKVTAICVSLPGVVNPTTGEVKFTGAL
GFMGTFNFAAYLESRAHCPVYVGNDANCATLAEMWLGNLNGISNGAVITLGTSVGGGIVINNQLLHGPHFQAGELSAMII
DNDAPELHYSTMGATTSAVKMIETMADICDIKDKTDGRRVFKEINCHNPVIWSLFEGFCRRVAVLILNIQTVVDLERVLI
GGGISTQKILIDEIKKQFMILQKSDYRLHDDVTMPEIMTAKFGNEANLLGALYGLLLTIE
>SEQF1778_EEI64665.1 putative translation elongation factor G [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQIVTGIVAHVDAGKTTLTEALMYETGVIRKLGRVDNGDAFLDPNTLEKQRGITLFTHQAELTYNNLALTLLDTPGHVD
FASQTEQVLPVLDYAILVVSATDGIQGYTRTLWDLLARYDIPTFIFINKEDVIGADPSGVIEQLQKDFSPACLDFADPLT
DEVRETIAMQDDTVLENYLNTGSLSDQTIQQLIKQRKVFPCYRGAALKLTGITKFLKGLEKWTVTPKFADEFAARVFKIS
HDDKGNRLSWVRVFGGKIPAKAVLLNEEKVNQIRIYNGAKFSPTQVLNAGQVGTLTGLTSTSPGLGLGKTKPLPAPVIKP
VLNYAVKVAKEDLHACLNALKELEDEDPQLQISWHPHIQEIHVQIMGEVQLQILQQLLQERYQLEVTFDEGNVLYQETIT
NKVEGVGHFEPLRHYAEAHLLLEPGKQGSGITISSDCSLDILDRNWQHQILTSLQTKEHLGVLTGAPLTDVKITLIGGRG
HIKHTVGGDFRQASWRAVRQGLMELKKQNECQLLEPWYAFHLKVPNDQVGRAINDIQQMHGTFALDEANSQDLTLITGTA
PVVGMRDYVQSVRTYTHGQGQLELVVAGYYPCHNAEDVIKDVNYDPVADLKNTPDSVFCAHGAGFPVPWNEVPAMAHYPY
RK
>SEQF1778_EEI64666.1 universal stress family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEIYPYKHILVAVDGSKITSNVLESAIDSALRNHASLDILRIVQVTQLTDGYSNAALSNEETYNIVKTTKERLDDLKKR
AVDAGVEDVNVHIRFGNPKRVIAHEFPSDHNTDLIVLGATGVSGLERFVLGSVTHYVSRMAKCDVLVVRKNDHVN
>SEQF1778_EEI64667.1 UbiC transcription regulator-associated domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADLVYRSVMRDIKQKILDNKYQGMRLPDERSLSEIYQVSRSSIKRALGVLAQQGIIFKKRGSGTFINPLYLKNQSLFHY
EGSNLGVTDSFQVDGKKQGIKLLDYQVVPASKDVQEELFLNDNDFVYQIKRLRLIDDQPFMIETGFIPIRITPTLSPEVV
NGSIFNYLEDMMGKRVTKSFMTIGVSPSTNEDQDLLKLNETEPVGTIEGIFFLDDGTPFEVSNMRIHYKYMKYSTFVSLD
QEN
>SEQF1778_EEI64668.1 hypothetical protein HMPREF0534_2006 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKNTLKRLIFYNWTVSICKKVDFLKKQFIINIVNLMIYVMLL
>SEQF1778_EEI64669.1 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVDYDSKKYLESVDAYWRAANYLSVGTLFLMGDPLLRQPLKAEDVKPKPIGHWGTIVPQNFIYAHLNRVIKKYDLDMFY
IEGSGHGGQVMVNNSYLDGSYTEIYPEYTQDTKGMAKLFKHFSFPGGTASHAAPETPGSIHEGGELGYSLSHGVGAILDN
PDVIAAVEIGDGEAETGPLMASWFSDKFINPIKDGAVLPIIQVNGFKISNPTILSRMSDEELTKYFEGMGWKPYFVSAYK
EADRDGEFDGYKPHMEVHEQMAKTMDKAVEEIKAIQKNARENNDDSLPQWPLIIFRAPKGWTGPTKDLDGNPIENSFRAH
QIPIPVSQDDMEHKDMLINWMKSYKPEELFDENGHPVALVEENTPEGNRRMAMNPITNGGIDPKPLVLPNYRDFAVDVQT
PGSVVKQDMLEWGKYLSKMAELNPTNFRGFGPDESKSNRLYAFLDNQKRQWMEGIHEPNDENVAPQGRMIDSQLSEHQAE
GFLEGYTLTGRHGFFATYEAFGRVVDSMLTQHMKWLRKAKDLYWRRQYPALNFVDTSTVFQQDHNGYTHQDPGLLTHLFE
KERPDLVKEYLPADTNSLMAVSNKAFRNQECINLFVTSKHPRAQWFSIDEATELVDNGLGYINWASTDQGSEPDVVFASA
GTEPTEEALAAIDILHDNFPELKIRYINIIEIMKLMKQDKNPEGLSDAEFNRYFTTDKPVIFAWHGFRDMIQALFFDRAN
RNVHIHSYEENGDITTPFDMRVLNELDRFHLAKDAIQSVPGYEQKSAAFVAKMDNMINKHNHYIRSEGKDLPEVTNWTWK
GLK
>SEQF1778_EEI64670.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELINTKKKNPKKLSFISIYFLGINGVIGSGAFLLPQVIYKDMDLASVLVLLCAAITVSMVALCYADLSSCFTGSGAAWL
YSYNAFGRFTGYELGIFTWLLGCCTLSAEVVALLTTLRSFLSLFNTHWVYYVSVFGLILLFSIINFFGRTLVKLVDNLSS
AAKMITILAFIVIGVFCIHFANFSPVIPHAATTGAMPLAKHFGAAFSVVFYMFTGFSFIPIAAKQMTDPEKNIPRVLIAV
MVSVTIMYSLMMLVAIRILGTRMSKYSTLIANAFGTGVGKWGYILVIVGMLISIFGVAFAASFNTPSLIFSLANEHAMLP
KWVGKKNRHDAPWVAIILTAFVSMVLVTQSYLFLVSCIVPASFVQYVPSILAVIKFKHTNEFPNHGFKLPGKYIIPVLAL
LISCYMVTNFTIKTITVGVVVAVLAAVSYFFIKVDEKHEAHHRAMLEKLKH
>SEQF1778_EEI64671.1 hypothetical protein HMPREF0534_2009 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGGLMEITIKRDGLKLYGLLEGTTTIINDTVAILMHGFKGNLGYDDSKILYALSHYLNQQGISTLRFDFDGTGHSDGEF
KDMTVFSEILDGIKIIDYAHTTMQAKKIYLIGHSQGGVVASMLAAYYRDIITKLVLLAPAATLKDDALKGVCQGSQYDPN
HIPETVDVHGFTVGGDYFRTAQLLPIYETAQHYSGPTLLIHGLADNVVSPEASKKYNVIMPNSELHLIPGEGHMFNGSRR
QEILELVANFLKN
>SEQF1778_EEI64672.1 branched-chain amino acid transport system II carrier protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSIKAACKTYLVIGSLIFGMLFGAGNLIFPVHLGQLAGNQWIAATGGFLLSGVLLPLFALLAISITHANGLYELALPNG
KRFALIFLILVQIIIGPLCATPRTATVPYTIGVAPYLSKGMQGWGLLAYTGAFFLIVYFFATCEGKITEIIGKVLNPIFL
IMLFLIFLLAFVHPMGSTTTPQPTPEYVNHAFSNGFIQGYNTVDALAALVFGVTIITAIRQLGFKSQQSVSLATTKGGMI
GILGIGILYIGLIYLGTTSRHQFAIAANGGTTLNQIAHYYMREFGNVLLLTLATITCMTTAMGLVVAFAQDFHYRFPQIS
YKAFLRGNCLLSFLVANMGLDRIVSWSIPVLMFLYPLAIVLILLGIFSPLFKGASLIYRITTGITMIPA
>SEQF1778_EEI64673.1 hypothetical protein HMPREF0534_1996 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNYDRTAKQQQNYVNQYHRRMIQQDLITPAGNGQVRFKLPLFKEYLDDTQDINSVRYDPLL
>SEQF1778_EEI64674.1 hypothetical protein HMPREF0534_1997 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSAKKGHIEGIKNLVKTLRELDVDERKIRQKIKVRYNLTDSEADKYLK
>SEQF1778_EEI64675.1 D-lactate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANVDVNPELVKKIVKQVLNQSMQNSSSTNKKIFAFSIRKDEEPYVKEWAENHPEVEVEYTSELLTPETAKKAKDADGVV
VYQQLDYTADTLQALADQGITKMSLRNVGVDNIDMNKAKELGFEITNVPVYSPNAIAEHAAIQTARILRQTKVLDEKIAN
GDLRWAPTIGREVRDQTVGVIGTGHIGQVYMQIMEGFGAKVIAYDPFENPELKKQGYYVDSLDDLYAQADVISLHVPATK
ENFHMINRESIAKMKDNVVIVNCSRGALVDTDAVIEGLDSGKIFGFVMDTYEDEVGIFNEDWRGKEFPDKRLKDLIDRSN
VLVTPHTAFYTTHAVRNMVLKAFDNNFKLINGEKADTPVKVG
>SEQF1778_EEI64676.1 transcriptional regulator, MarR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSHFNLHYSYKRVTYKKLGTKRVDERKNLMATSEELTKELFSFSNEIHQRIIQSHRAHSAFIGRGKILWLLANNDYVYQ
NQLANLAKIKPGSLTQILEKMEHEQLIIRKRDHNDKRLIYVRLSNKGKEQFQKNEKYHRDFQEFMTAPLTPVEIDQFVAT
LTILRKQFNTYIDQHQKEMKNN
>SEQF1778_EEI64677.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIRIARKNLALWATLGAVLFLLIQVSCDLYLPTVTADLVNRGIVQKDMGVIWSKGIKMLIVAAIGLLAAGLNVYFAATQS
MKVGEKLRSQIYHKVLRFSNREMDEFGDSSLITRSTNDIVQIQNVMVQMLRMMLQAPVMLVAACVLAYIREPRLTKVFFI
SLPILAIIVMMVMYFAVPLFKSIQKKTDRINLIFREGLTGVRVIRAFRQDEREQKRFKTANEDYTQTGIKAFTIVSTLFP
VVTLILGMTNVAIILLGGHLVASMNMQVGDLIAFMTYATQIMISFMMLSMIFVFVPRASASAARVNAVLDQPISIHNAPE
KDQEKISINQPASLEFKNVDFRFHGAERLALHDLNFKVTAGQTLAIIGGTGSGKSALVNLIPRLFDIESGEIMVDGVPIK
KLSQHNLHEVISITQQQAVLFSGTIRSNLQFGYEEATNKEMWHALEIAQAADFVREEGGLDAVVEQNGSNFSGGQRQRLA
IARTIIKPASIYVFDDSFSALDFETDAKLRAALAKDPQIQRAVTVIVAQRISTVVDADQIIVLEAGRVVGQGTHQELKAH
NETYQQIIKSQVEKGDVDRA
>SEQF1778_EEI64678.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIVRRGPQVPEQAQHFWPTTKRLIAYLRPWRVGVIVSILLAVISVILSILAPKILGEATTIIYDGMLKGYAEMKAGAHL
STLPINFTRIWQIGITVILLYLFSGLFSFLQLQIMTRVSQRVVYNLRQDFEEKMRRVPIKYYDTHNNGDIMSRMVNDMDN
IAGTLQQSLIQIITSVLTVIGVFILMLTISWKLTIIALVTIPLSILVVAFVAPTSQRLFGRQQAALGKINDQVEETYAAH
TIVRTFNKEEDEEKEFNRRNHQYYQSAWKAQFFSSLMMPMMIFIRNVGYLVVAVVGAIQVIHGQITLGNVQAFLQYTNQF
SQPIAQIANLSNTIQQTIASAERIFEVLDEPEMDDKIKETPVLAGTNLPKVEFKDIQFSYTDEPLIQDFNLKAPRDKMVA
IVGPTGAGKTTIINLLERFYDPQGGHIYLNGQDISSMTRDDLRKHIAIVLQDTWLFTGTIFENIKYGNENASDEEVYHAA
KMARADAFIRELPDGYQTVLDESASNISQGQRQLLTIARAFLADPEILILDEATSSVDTRTEVLIQEAMNALQQERTSFV
VAHRLSTIRKADQIVVVNHGKIIETGNHESLMNQKGFYAALYNSQFAGN
>SEQF1778_EEI64679.1 ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQKITLKESFIDQATKKITPHWGPLGWVTYKRTYARWQADKDRTEEWKETVKRVIEGNINLDPRLNDNPSQAVIDELTTE
AEQLFKLIYGLGATPSGRNLWISGTDYQKRTGDSLNNCWFIAIRPQKYGDSHIQPSYLNNEQVAVSMPFAFLFDELMKGG
GVGFSVTDDNINQIPSVDHQINLSIVIDKSSASYDESISAGAYDRNDIKKPLQENEIYYQLPDTREGWVLAVAQLIDLHF
KNTNQNNVNKLILDMTNIRPRGAKIHGFGGTASGPTPLIEMLQDVNKVLNAKDGTNLSAVDCTDICNLIGKAVVAGNVRR
SAELALGSGNNHQFITMKQDQEKLQHHRWASNNSISIDKDFDHFQEVADSIQENGEPGIVNTSLSKNYGRIADGYQKNID
GDVEGTNPCGEISLANGEPCNLFEVFPLVAEKQGWDLNDAFRLGVRFAKRVTFSHYDWEVSRKMIQKNRRIGISMSGIQD
WILNDFGNRVVTGFAKNNDGVMEPVYDQRVIDKFNTLYQAVINADKEYSAELNCNLSIKHTTVKPSGTVAKLAGVSEGMH
FHYAGYLIQRIRFQDTDPLLDALKECGYRMEPDIYTDHTICVEFPVKATNAENKNFASAGNVSIAEQFATQAFLQKYWSD
NAVSCTITFQNKEAAQIPVLLKQYLNGIKSTSLLPYYGGSLKQAPKEPITKEFFVKRQAEITGNVIDVFNAQQQDKALDL
VDQSDCAGGACPIR
>SEQF1778_EEI64680.1 peptidase, C69 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKNLSACTTVLVGRNATIDGSTMAARNDDTFGPLTPQRFVTYPAYHNHPNQVKAYLNKCVIDRPADGYRYQGTPNVDYR
TEGVFDESGFNEKNVGMSATESVYANERVLACDPLNTETGINEDLVVAATLPFIDSARDGVAYLGKLVAKYGSAEGNGII
FSDKKDVWYMEIVTGHHWVAQRIPDDSYAVTGNRVAIQQVDFNDPDNFMWSDGIQEFVEKNHLNPDKYGWDFRHIFGTVD
VFDQHYNTPRQWYGHKVLNPSVEFDPLDFDIPFIMQTNHRVTLEDVQKILSSHYQGTPYDPLGHEGTEQQKQLFRPISLN
RTQNSHILQVRNDLPEAASTIMWMSFGVPTFTPYIPFFGNAEDIDVSYRETPEKLNMDLKSAYWMYRTLSMLVESHHAEF
SKEDLDYLKDSREYLYRWVNEIAPQVKGMAPSEVSDFLSSKTHEMVAEMAKRTKNLMAELVMHGLELSKLTFKIDKNL
>SEQF1778_EEI64681.1 YbaK/EbsC protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
EEIFMSKKNKKSKMKKTQVEQILDKNNIAYEQAEFPTHQDGDVRSMSVDHTGVDEHIIYKTLVLTGNVTGPLVGVIPVDT
HLDEKKLAKVSGNKKVNMVPLKNLLKTTGYVHGANTPVGIYEKFEYPIFIDNEAREQGDIFVSSGKVGRSIKLNAEDLAT
LVHATFADLEQK
>SEQF1778_EEI64682.1 hypothetical protein HMPREF0534_1992, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
PIAKILGIQCPPVYLTASLYLGSAIGLICLYYLFKDRFDTGEQSVSLNDLDSLVLMIVLNIGDGILLNLGIKLSSAVSMS
LISNFEIVATAVICGEKITKKLWLGISVIVIASMVLSFNFSSLKISWGIILGLLATILWGYENNVTKNYQ
>SEQF1778_EEI64683.1 hypothetical protein HMPREF0534_1993 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQVVIIKGFGVSIGSYLIALGVKETPVKSVLTIVYCLILGFFAFGLSILLYIMAQRYLGAAKTSAYYALSPFIAVILLLL
ILGESLSLQFIIALILMIAGIFIVVNDVPVSEKRPTQKYS
>SEQF1778_EEI64684.1 hypothetical protein HMPREF0534_1994 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKFKLISGLLVMFLAFFILTGYTNNTQKNSNTIKVTYTLKQGKKVVATKKTTLKKNDKVITGLKKNWKVKEVKGFITSI
DGMKENQKKGIYWTYTINGEKVNKLANQQTLKNKDKVQFTLDKAE
>SEQF1778_EEI64685.1 hypothetical protein HMPREF0534_1995 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVRVHPVSKHMQVKRMTLIAMLAALGTVLRVFKIIPIPNVQPVTDLIMIATLVLGVGFGISLAMMIMILSNLLLGFGIW
TVPQILAYAVCVLTVAGLAKVTPLKKHFTLQLILATFLGFEYGFFVSLGMSIYGGWAAFLAYWLSGLLFDLYHALGNLGC
YFILYKPLTVAFKHYLQEG
>SEQF1778_EEI64686.1 glycoside/pentoside/hexuronide transporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDTKIDTAKSKQHVARSRFAYSMGAFGHDVFYALLSTYFIMYVTGHLFNSSNKAFNNHMVLWVTSIIAVLRIVELLVDPL
IGNAIDRTNTRWGKFKPWVVGGGIISAIILAILFTPMGGLSLSNPYLYLLIFAILYIIMDIFYSFNDVAFWSMIPALSFD
SHERDKIATFARVGSTVGGNIVGFVIMPMVLFFSANQNGGTGDDRGWFIFAAIAAAVAAITAVGVGLGTHEEKSLLRENK
EQTKLKDVYKILVKNDQLFAIALSYLFYTTGITLVNSMELYYFTYILGDSKAFSILGGLNTVIGVISVLTFPLFTGKISR
RKLFYGSVSVLFLGLLIFAFAGKSLILVLVGAELFFIPQPLVFLVVLMTITDSVEYGQLKLGHRDESLTLSVRPLLDKFA
GAVSGWIIGPTTIIAGMTAGATAATVTAAGAAKFKLVMFLAPAILILISVFIFAKKVKLDEKMHAKIVAELEKTWGDHLE
DADSDNPQTVSVSTPQPDVTDITSPVAGTLVNLKDVNDENFASGNMGKGFAIKPSDGKVIAPFSGTVRATFSTRHAIGLE
SDNGIMLLIHVGIDTVKLRGTGFISYFDKDQHFNKGDELMEFWDPAIKKAGLDDTVMVTVTNSKDFDIKLLKDAGEKVTT
IDIVMEVTKK
>SEQF1778_EEI64687.1 hypothetical protein HMPREF0534_1920 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKTFMSGYYQGVIETAPTTLSAAKTEQLAITMTILHLRHAGINITSIHDFLVNDLHANKRLVNKYINFKC
>SEQF1778_EEI64688.1 phosphogluconate dehydrogenase (decarboxylating) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSDQKAQIGVVGLAVMGKNLALNIESRGFTVGVYNRHRNRTDDMMRDHSDKKLVPSYTVKEFVDSLEKPRRILMMVKAGK
PTDALIDELLPLLDKGDVLIDGGNTNFHDTMARNAKLDKSGINFIGMGVSGGELGALHGPSLMPGGQKEAYDLVAPILTK
IAAKAEEDGKPCVAYIGPNGAGHYVKMVHNGIEYGDEELIDESYNIMRNVLKMPVDDIAKTFAEWNKGELSSYLVDITAD
ILTRKDDLGDDKNKPIVDMILDRGANKGTGKWSSMTALDGGAPQSVITEAVYARYISMMKDERVQASKELPVETEAISID
DKKEMIEKVRQALYFGKLMSYAQGFEQMRIDSERYDWNLKYGELAQIWRAGCIIRAQFLQNITDAFTKNPDLKNLLLDDY
FKDIAKKYQKATRDVVTLAVKAGIPVPSLSAAISYYDSYRSEVLPANLLQAQRDYFGAHTYERTDRPGNFHYSWYEEQ
>SEQF1778_EEI64689.1 glucose-6-phosphate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNILATENKAVITLFGATGDLAKRKLYTALFKLYQKGYLADHFALLGTSRRPLTDEEFQQIVRESISNIPETEDGQAEAF
SKHFFYKSHDVTKPEHYEILKQRLAELDEQFGAEGNRLFYMSMAPQFFGTIALNLKKQGLLTDNGFNRLVIEKPFGRDFE
SAKKLNDELSQTFSENQIFRIDHYLGKEMVQNIQALRFGNTMIESLWNNRYIDNIQVTLSEKLGVEERAGYYDQSGALRD
MVQNHIMQIVAQLAMEQPVAFTDADVRVEKIKALRSLRLYTPSEAAANFVRGQYDAGEGTNAYRHEDGVDPESGTETFVA
AKLMFDNYRWSGVPFYVRTGKKLADKFTRIDVVFKKPLIDIFANPRSESDQSLNSNVLTIFVEPNSGFAIQLNAKRAGQG
FTTEPVDLRFLQSDSDKKESPEPYERLFHDALEGDHTNFASWAEIAYAWKFVDVIRKLWDIEKPQFPNYTPGSMGPAASD
ELLARDGRKWVYRLNH
>SEQF1778_EEI64690.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFLKKLKKHSPLLILGLFFLGICMRMPITAIPSVIKDIAQTFNVETTSLGILTTIPLLCFGLLSSVVSALAQKIGNELT
IELAMILMFIGSYLRILNFSSLMIGTILVGAAITCINVLLPAIISDKLPNQIGSVTGMYNVAMTLFAAIGAYAITPITHA
TSWQTAVIIISIVALIAAIIWVPNLRYNQRATKESSSTERGTNMWKNANAWWLLLFFGGQCFVFYSIVAWLPTIAMDAGL
SSDNASLVAGLLQLLSMPFAFVIPVIATKMKNRQPIMLFAGIISLIGTGMMFFPVNSLVYYIFVALFLGAGTTTTFVLAM
TLFGLKTKSSADTRNLSGMVQSVGYLISALGPIVVGNLYSQTHNWFASLIVIAIAAIFFTVCGVIAERKQFV
>SEQF1778_EEI64691.1 3-demethylubiquinone-9 3-methyltransferase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTAIYPYLTFENAKEAMAYYEQDFGAQITYHESLTKEQAESLGLPVDQLNQTTMRGEFMIAGQKIICADATMGNPQTSTL
ISILLDFEEEEDKARDLFNRLAKSDNQRVTVPFGDWILNNVMGQIVDKYGITWLISANKQG
>SEQF1778_EEI64692.1 putative nrdI protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAPMNIIYISLEGNTRSFLTRMQGYAKQQHSISEDRPLIELKEVSDQTLPADETEPFFAFVPTYLNGGNGIDSGFTEIMT
NALGEYISYNDNAKKCVGFVGSGNKNFNEQYCLTARKYARNFDAPFLADYELRGTSQDIERIYTILAKRWSEVNA
>SEQF1778_EEI64693.1 hypothetical protein HMPREF0534_1926 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRNVILNEGQLFTNFVIIIITFIFAAFFVAAEFALVQARVTALEEMQAKRDKPSTKINRAIKMVTNLTEYLSTTQVGVSI
CGIILGWVGEGTIEALLADALSLPSWSLNNSVIHVVSAIVGVLLLTYFEVVLTEIVPKNISIDIPIKTLMFVTTPLHYFH
ITFYPFVWLLNSSANGIVKMLGMKPADESQDVLSQSEIISLSRNAVKGGELEHNDLLYMERAFDFNDKVAKDIMIDRTQL
TVIDINKTVNDAIKLYLKTKYSRLPVVADKDKDKILGYVFNYDLIRQKQINGDVSLAKVLRHMPTTPETTSITEVLKLMI
STRVPMVVVVDEYGGTSGIITDKDIYEELFGTVRDEIDKVSDNMISKIDENQYRVDGKTTIYDFERFFHVELKDSEDSDV
VTLSGYVLDNYHNIHEGETIKLANLELKIQDYRHSYIDSFIVTTLSK
>SEQF1778_EEI64694.1 hypothetical protein HMPREF0534_1927 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSITINDLVYDAKSGDQLDNVSLELKSPQVVGICSNDTGAATALEDLLSVRGKILNGDVTINGVPFKKYKRQSKNEIGR
IDDVVLKGKTVAKAVDHALRHRKNALKPKQALQMLKSLKFEPDQMIASLNEAQQLELRIALLLAWQCPIVILSDAFDGLE
ENKRQMIGHLVKDYAQKVDALVLFTSKNISTLMRFAHTLYYFNGSHLTSARDLSMNDGVDCTVTVVGTGFPIDNAVKLGA
HMLEEAGNETRFLFTGNIQTLLPLLEQSTITDVRIEDATIEDELMAY
>SEQF1778_EEI64695.1 hypothetical protein HMPREF0534_1928 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGRIVFISHRHDDLVPTIIKRVPEAVALTSFKFEIQRGDILCWLPTVNEYVDDEVQELAELIDHSLFLPSKIVMLSIAGT
ADDATNQQLQEWYGQQATQTVLAHQYAVKMIDEFELPYTIIRALPITNEETSLKVVSEGNPLEGKEIGLGQVAQIIEQAV
TTDDFRNQSIGIAP
>SEQF1778_EEI64696.1 hypothetical protein HMPREF0534_1929 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFGINRLELHHKKAGCDMDKLEEYQRWQNNLARVRFPRWKELPTLGLYVDQVVAIVNEQLNHLGIEPLTKSMVNNYVKK
KVIQAPIKKKYAVNQLVDLLLIGLLKSNFSLDDIRAGIAQVTMNSYPQAAYDRFVEILNALLAGEEIPSNNVINTQNDRL
MTLALKSVLSRMDAAQLLTAMQKVAQPAPLENN
>SEQF1778_EEI64697.1 transcriptional regulator, MarR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDILREIGMIDRALDSIANIEFKQIDLARGQYLYVVRIYEHPGIISEQLSNLIKVDRTTIARAVKKLEKNGFIERKSDP
TNKKIKRLYVTQKGKEIYPFIIRENQFSNSEALKGFSEKEAQQVHDYLVRIRQNIDGDWDTVKHGGKRQY
>SEQF1778_EEI64698.1 B3/4 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQVTIDPSFWELFPDAQVNILFANGIDNHDTDDNYDERKKLLANATHEADKFLTNETFRLNPVVDQWRQAFQQFKKKKG
ARSSIEALLKRANQGRKFEPIEPLVDVYNSISLSYGVPVGIEDRNKIAGNLHLGVAKGGEAFRPVGAEEDEPALAGEVIY
YDDEGAVCRCLNWREAQRTMLTEDSQNVVAVMEAINPEQIERANEAMEELSKLINQYFGVNTSQVYRLTKDQPAADVPDN
L
>SEQF1778_EEI64699.1 hypothetical protein HMPREF0534_1932 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQYINHRHISLVLALFILYLAITYWEVVAKFIQTIFSATMPLLIGGIVAYIVNLLLRQYEYLYSHLFKKPSLQKFKRPV
GIIMSYLTILLIITIVFALVIPELITCVKLLIANHSHIINHFIDYFEHSSDFKGFINSFDTSKIQWDKIGKYLTSGVGGT
FRTVISTASSVFSVATTAIIAFFFSIYLLIYKEMLQRQFTKLLSTYFSRYQTQIIKVLKVFDESYSNYIVGQCKDAAILG
ISCFIGMTILRMPYASMIGVVTAFGALIPIIGAILGASVGVIIIFAVSPLQAGIFLIFIILLQQLDNRITYPLVVGRSIG
LPSVWVFAAVIIGGGISGILGMMFTVPLFAALYKLLSADARNRITIQKNE
>SEQF1778_EEI64700.1 AP endonuclease, family 2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFLPQLGLKGSSQLDQIEDRLQYNPTIYEFYTNADDFTDEGYQRLYDAIQYVKDAGIKNIILHHPMKFQDHHSEVVAPEK
QYPDLYRFIEFTTEKLLYLADDLDVQVLVHGGYAGPESRYFVSLYPSVEDARNAVYQRLDRFADAGGEHIMFENSIAPVF
AYGDPLQEDEILAHDYRLAFDTSHCFIELHGNNQKLAVSLAHLKDRTVHYHLVDSMGETHDSLTLGTGKIDWANVLPHLN
PAATSIYEINLHDQNNCREQIDSHNYLVKLYQKLNNRGV
>SEQF1778_EEI64701.1 hypothetical protein HMPREF0534_1934 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVRYHIEEVFHMEQWLPRQPLILTPTIPLMWTVGWLCTMSAYIILGGEPPSPNQLQDSVLLVSAVILVMNMYNLILIYQR
AEKYRNLSPYAPRALLLAIVLIISIVLAWGQPKVVLIPSYLNIWVMIFIVLNFLQALLGQFFALLERPQSRRKFASMYWP
IVVLCAAGIVIPPSLELHNGWTLPFIIGDCFLLIFFIARSWQEMPRILVKVPANNSIIYEMLVGINLATIISTVMIGVLF
IIFSFINNEISEVSASFALSPTINGISGLIIGAMQRYNNDYRYGHVKGHPQRYIYCGIFLVIIFIGLGFILRKANNFW
>SEQF1778_EEI64702.1 MIP family channel protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHGFIGEFFGTMVLILLGAGCCAGNSLNKTYGKQSGWWFICISWGLAVTTGVYVAGFLGSLGHLNPAVTIPFAIFGLFPW
SNVIPYLLGQFLGAFVGAVLVIIQFYPQFKATPNEEEGNNVGIFATRPAINSPIFNFFSEVIATFAFIFILLNLGNFTQG
LKPFIVGMVIAVVGTCLGTTTGFALNPARDWSPRLAYTILPVPNKGAAEWWYAWVPMCGPIVGGLLACALQTALV
>SEQF1778_EEI64703.1 ethanolamine utilization protein EutJ family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKEILKNSNEQLKKFATIVNGDKPMRKVKPEEKLKTGVDLGTSSIVLTVLDSKNRIVYGAYEYDHAVQDGIVVNFMESV
NILRRLKEKAEKVLGCELKTACGAIPPKTGEKSAKVVANVIEETGMICTGIEDEPTAAAKFLRLVNGTVVDIGGGTTGIS
VFKNNKLIHVIDEATGGFHMTLVLGGRYKIKNDEAEQLKRDKDKEPEVYAVIKPVVEKMAAIVQNMGAEVIDPVIVVGGA
TNFTEFTTTFSKTLKRKVYKPLYPQFVTPLGIAMFDD
>SEQF1778_EEI64704.1 transcriptional regulator, AraC family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYEYSSKFLNDIQRVTKTFQDLTKNNIVFTSVTGTVVDCNTLLFDSNVSLDHLRKLGFKNYFLFPLAVNCSLSGFFILDA
SHIDVDFIKLCGKYIETSLKEIISDKSNQIIILDPIEASKASSLAQSLNSILSISEAPTGAGVYPLPSNFTVNGNNAGDS
SPSDIEKNIMMALKYINSNLEKSLTLENVSQKIYLSPSYLSRIFKNYFNDNFINYINLQKIALAQEKLIFTNTPINKLAH
SVGFSQTSYFTKIFKQKVGMTPSKYRKYNSAIKKIYTIPRNLEWRSNKSVYEISKDFFNKNEISFKARDLNGYPYIYSIN
DLSDVRNKAGWVYTVDCSQPIIPASEINVFDRSVIQWIYTEKII
>SEQF1778_EEI64705.1 BMC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGQEALGLIETKGLVASIEAADAMVKAANVKLIGQEKIGHGLVTVMVRGDVGAVKASVDAGVQAAENIGEVVSNYVIPRP
QSEVEKLLPNKE
>SEQF1778_EEI64706.1 BMC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNDFLNSTSTVPEFVGASEIGDTIGMVIPRVDQQLLDKLHVTKQYKTLGILSDRTGAGPQIMAMDEGIKATNMECIDVEW
PRDTKGGGGHGCLIIIGGDDPADARQAIRVALDNLHRTFGDVYNAKAGHLELQFTARAAGAAHLGLGAVEGKAFGLICGC
PSGIGVVMGDKALKTAGVEPLNFTSPSHGTSFSNEGCLTITGDSGAVRQAVMAGREVGLKLLSQFGEEPVNDFPSYIK
>SEQF1778_EEI64707.1 dehydratase large subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRQKRFEELEKRPIHQDTFVKEWPEEGFVAMMGPNDPKPSVKVENGKIVEMDGKKLEDFDLIDLYIAKYGINIDNVEKV
MNMDSTKIARMLVDPNVSRESIIEITSALTPAKAEEIISKLDFGEMIMAIKKMRPRRKPDNQCHVTNTVDNPVQIAADAA
DAALRGFPEQETTTAVARYAPFNAISILIGAQTGRPGVLTQCSVEEATELQLGMRGFTAYAETISVYGTDRVFTDGDDTP
WSKGFLASCYASRGLKMRFTSGAGSEVLMGYPEGKSMLYLEARCILLTKASGVQGLQNGAVSCIEIPGAVPNGIREVLGE
NLLCMMCDIECASGCDQAYSHSDMRRTERFIGQFIAGTDYINSGYSSTPNYDNTFAGSNTDAMDYDDMYVMERDLGQYYG
IHPVQEETIIKARNKAAKALQAVFEDLGLPKITDEEVEAATYANTHDDMPKRDMVADMKAAQDMMDRGITAVDIIKALYN
HGFKDVAEAVLNLQKQKVVGDYLQTSSIFDKDWNITSAVNDGNDYQGPGTGYRLYEDKEEWDRIKDLPFALDPEHLEL
>SEQF1778_EEI64708.1 dehydratase medium subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADIDENLLRKIVKEVLNETNQIDTKINFDKENNSTATATEEVQQPNSKAVPEKKLDWFQPIGEAKPGYSKDEVVIAVGP
AFATVLDKTETGIPHKEVLRQVIAGIEEEGLKARVVKVYRSSDVAFCAVQGDHLSGSGIAIGIQSKGTTVIHQKDQDPLG
NLELFPQAPVLTPETFRAIGKNAAMYAKGESPEPVPAKNDQLARIHYQAISAIMHIRETHQVVVGKPEEEIKVTFD
>SEQF1778_EEI64709.1 dehydratase small subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEVDDLVAKIMAQMGNSSSSDSSTSATSTNNGKEMTADDYPLYQKHRDLVKTPSGKKLDDITLQKVVNDQVNPKELRIT
PEALKLQGEIAANAGRPAIQKNLQRAAELTRVPDERVLQMYDALRPFRSTKQELLDIANELRDKYHAEVCAAWFEEAADY
YESRKKLKGDN
>SEQF1778_EEI64710.1 diol dehydratase / glycerol dehydratase reactivase large subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATEKVIGVDIGNSSTEVALADVADNGTINFIGSGIAPTTGIKGTKQNLVGIRDSINQVLNKANLTINDIDLIRINEATP
VIGDVAMETITETVVTESTMIGHNPDTPGGIGTGAGITVRLLDLVKKTDKSQNYIVVVPKDIDFEDVAKLINAYVASGYK
ITAAILKNDDGVLVDNRLNKSIPIVDEVAMIDKVPLNMLAAVEVAGPGQVISQLSNPYGIATLFGLNPEETKNIVPVSRA
LIGNRSAVVIKTPAGDVKARVIPAGNIIINGDTGKEEVGVSEGADAIMKRISSFRHINDITGESGTNVGGMLENVRQTMA
DLTGKKNSEIAIQDLLAVDTQVPVEVRGGLAGEFSNESAVGIAAMVKSDHLQMEVIAKLIEDEFHTKVEIGGAEVESAIR
GALTTPGTDKPIAILDLGAGSTDASIINKENQTVAIHLAGAGDMVTMIINSELGLNDIHLAEDIKRYPLAKVENLFQIRH
EDGSVQFFEDPLPSSLFARVVVIKPDGYEPVTGNPSIEKIKLVRQSAKKRVFVTNALRALKYVSPTGNIRDIPFVVIVGG
SALDFEIPQLVTDELAHFNLVAGRGNVRGVEGPRNAVATGLILRYGEERRKQYEQ
>SEQF1778_EEI64711.1 hypothetical protein HMPREF0534_1944 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKEGSNMNNDSERPSIIVGVENGTAIPQNAAPLFNGIEEEQIPVAVREIDIDNVVSRAYQSALASRLSVGIAFDGDRF
IVHYKNLKENKPLFDKTISDGKQLRVLGANAARLVKGIPFKEMVNR
>SEQF1778_EEI64712.1 BMC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSLGYVECNGLSGAIVAADRMLKTADVDLSSIQNTKGNGWVTLQVSGELSAVTVAVEAVKDYLPDVYVTSTVIGRPASG
LDSLGKTDLLNQTPKKKEANKPVEPTITIQPESVKDSIEEKVDEHADEPSIEDRELANDSKTVDGPDDKDQDVSSNEKVT
CNMCGDPKCPRKLGEPHKKCIHYNELKKK
>SEQF1778_EEI64713.1 BMC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNALGMIETKGLVASIEAADQMVKAANVTLTGQEKIGSGLVTVMIRGDVGAVKAAVDAGVQAAEGVGEVVSSYVIPRPH
EEVEKILPGSNSDAE
>SEQF1778_EEI64714.1 propanediol utilization protein PduL [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDEEHLRTLIRAIIKETLNPNLVPIGVSNHHVHLTEEDFQKLFPGQKIEMLKKLRQHADFAAKQTVDLIGPKGTIKHVRL
MGPYRSHSQVEIARSENFTLGIDAPIRMSGDLDGTPSIKVRSPYAEIEVQGVIVAKRHIHMSLEDAKRFGVKLGDPMQVE
VDGDGGRKTIFDDVVARPREDFVLEMHIDTDEANAANVGLGNNSYGKVIIKKKD
>SEQF1778_EEI64715.1 hypothetical protein HMPREF0534_1948 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDSLLQQVMHRLEERKHTSTEVSFNQQVTPPSDQIFLRNGKVILRNISISLVKDLYSMEKTNAWVNWVLEGISYDVKFYF
LINEQMVNFIPRMMILDWPILFVVNNESPVIASHNRIITRGEIAAKPDKSILVRYQQQLITDEAVDICNYKKIKIKIRTE
ENCIWRE
>SEQF1778_EEI64716.1 ethanolamine utilization protein EutN/carboxysome structural protein Ccml [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MARVVGSVVATQKDPSLVGKKLMIVQQINSDQQPVRFEQVAADTVNAGIGDNVLIVRGAGARRADKERDEDQTRDVNDCT
IVGIIDRFDK
>SEQF1778_EEI64717.1 ATP:cob(I)alamin adenosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIYTKGGDKGETSLFDGTRVPKDSLRVETYGTFDELNANISLADKFCESKRNKKLLQEVEYKMFFLQGEIATEKRQYFT
DKSKIITDEDTRRLEKVIDEYTAKLPPVHSFILPGSSTAGAQLHVCRTICRRAERLFVRLSKDVKFRPELERYVNRLSDF
LYIVARDEDYEDLLNTVTDDVIKIYQRYQEKKDVR
>SEQF1778_EEI64718.1 hypothetical protein HMPREF0534_1951 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEEQISKIVESVINSNNSKNLFDRHKMEKVIDAAVARANELGVGVTIAIMKADQVLQMSYHMPNANLVSCTLAPKKAWS
ALAMKEPTKDISKDIQPGAGLYQMETMLDGRLASFAGGIPLKINDEIIGAIGVSGGLVEEDQSICEAAVAEFLKESK
>SEQF1778_EEI64719.1 aldehyde dehydrogenase (NAD) family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQINDIESAVRKILAEELDNASSNSAAVTNDDGHRGIFTNVDDAIAAAKAAQEVYRDKPIAVRQQVIDAIKEGFRPYIEK
MAKDIKEETGMGTVEAKIAKLHNALYNTPGPEILEPVVENGDGGMVMYERLPYGVIGAVGPSTNPSETVIANAIMMLAGG
NTLYFGAHPGAKNITRWTIEKMNDFIADATGLHNLVVSIETPTIESVQQMMQHPDIAMLAVTGGPAVVHQAMTSGKKAVG
AGPGNPPAMVDATADIDLAAHNIIASASFDNDILCTAEKEVVAESSIKDELIRKMQDEGAFVVNREQADKLADMCIQDNG
TPDRKFVGKDATYILDQANIPYTGHPVEIICELPKEHPLVMTEMLMPILPVVSCPTFDDVLKTAVEVEQGNHHTATIHSN
NLKHINNAAHRMQCSIFVVNGPSYVGTGVADNGAHSGASALTIATPTGEGTCTARTFTRRVRLNSPQGFSVRNWY
>SEQF1778_EEI64720.1 alcohol dehydrogenase, iron-dependent [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGIMPMEKFSMPTRIYSGTDSLKELETLHNERILLVCDSFLPGSDTLKEIESHINKSNKCEIFSDVVPDPPLDKIMEGV
QQFLKLKPTIVIGIGGGSAMDTGKGIRFFGEKLGKCKINEYIAIPTTSGTGSEVTNTAVISDTKEHRKIPILEDYLTPDC
ALLDPKLVMTAPKSVTAYSGMDVLTHALESLVAKDANLFTVALSEEAIDAVTKYLVECYRHGDNVDARKIVHEASNIAGT
AFNIAGLGICHSIAHQLGANFHVPHGLANTMLLPYVVAYNAEHCEEALHKFAIAAKKAGIAAPGVGDRLAVKRLIAKIRE
MARQMNCPMTLQAFGVDHAKAEAAADTVVANAKKDATFPGNPVVPSDDDLKMIYEAIIR
>SEQF1778_EEI64721.1 acetate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKKILAINSGSSSIKFKLYLMPEEKLLISGSAENLGSSTSQLSYKTEKTGETRQLPLKNHSEAIDHIIDVLMTSGVVKD
KSEIYGVGHRISHGGSYYKHAVAVTPEVEKRIDELRVLSPLHNPNGLAGIKAFEKFLPDAKEVVTFDNSFHHTIPKKAYM
YALPYEFYEKYQIRRYGFHAPSHQYVSEKARELFGKEKTRRMITCHLGNGSSVSAILDGKSVNSSMGFTPLAGVVMGTRC
GDIDPEIIPFLEEELNIDSHEMRRIMNEDSGLKGLSGISNDEREIESAAKNGNERAQLALDVFVHSIQQYIGAYTTDLDG
LDTLVFTAGIGEHAAYIRSQICKNLDYLGVKIDEEKNKQNALSIEAPDSKVKVAVIPTNEEIIIARDVMNVTQQQ
>SEQF1778_EEI64722.1 BMC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTRQDIQRTIQEYVPGKQVTLAHIVANPTPDIYEKLGIQTPKNALGILTITPSEASIIAGDIATKSSNVTLGFIDRFSGS
VVIVGEVSEVESALRHVVDKLHALLGFDVPEITRT
>SEQF1778_EEI64723.1 hypothetical protein HMPREF0534_1956 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTHQRILTFNNGFNFRDLGGYKTLNGQVLKCNTLVRSAHLSYFDRFEQRELYRYGIRAVIDFRSTSEVALYPDQLTSLI
KYIRIPVFDNDITESNVDIIEARKVFSKDPRAGFNRMLSVYRQFVTNEQAQEAFHQFIKKLCLHSTQGGILFHCSAGKDR
TGLAAIYLLSLLGVPESTIYEDYILTNKTSVKRIKERLRFAVEADLGENYLHSIYDLSTANKCYYNQAISLINSKYGGMQ
NYLHDVLQISNSMVEQLKYLYLEK
>SEQF1778_EEI64724.1 phosphoglycerate mutase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTLLLIRHGETYANRLNYIQGTLNNRLATLTEQGIADAKAYQEVLKHNQIDFAYTSPLKRALATSKIICNHTNINVRVD
SRLSEISYGQWNGTAIADLKRQYTTYFDSETNDVYPHSIEINNGESFAHARKRVWTFVTEISREYPSQTILVVTHGWVIK
NIISLCLNNTDGTAFKNPRNLSVSKIQVDPVTGKQKVCYYNRPLKGIGKL
>SEQF1778_EEI64725.1 hypothetical protein HMPREF0534_1958 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLLAVIMIFIGLNIDTFIALLFVLRNYNYRLPIITFVTATITLWILGVVLGKGLAALFPDWITGFMGIVLIFLAVFGQN
DDDNENINTGFISLFLFCLSLGGDNLAVYIPWAVNLSWLEILQIGIIFTICSVILILLGKAIISFGPIAGLLEKYGNYGS
KIVYVLAGLYIIWNSHLINHLWILIS
>SEQF1778_EEI64726.1 ethanolamine utilization protein, EutP [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRTMFIGAIACGKTTLTQRLEHQQIRYNKTQAVEFTSNIIDTPGEYMEHHNMMSTLRVTSMDADIVVLLQSAVDKRLVF
PAGFCSMFSKPTIGVITKIDLVNDPADIEYSKKLLLSAGVKKVIPISAVKNINIDKLLAELN
>SEQF1778_EEI64727.1 putative flavodoxin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTAHVVYATMTGNNEEVANIVCDSLTNLNVKVIESEISQTDVTEFAKADILVVCAYTYDEGAMPEEGLDFYDDLQETDL
TGKVYGVAGSGDKFYGEYFNTTVDHFDEAFKKAGATSGAEKVKIDLEPYEEDIERLNTFAKGLVETATK
>SEQF1778_EEI64728.1 flavin reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVIMARVGVLIGSLSKDSYSRKVADYFTALPTSLEFVELNYSILPFYNPDLEKKPPIEWQAFRKATDSVDALLIVTQEYN
YSIPGGLKNALDVLSVPSPNQHLMGKPVLVMTDSAGEKGGIIANAHLHQVLRYLGMRVMNCTIAIGNVQSVFKDGRNHDV
KLASRLAQDIKDFAKFIGESNLPYQACIDMGHNFCYSPNELALLDGSGTKIATITLDNSERKTVVIEEVTVAPEYRGQGL
ANKIMTTLMWLVEGADRQVKANCPFAKSYLETHPQFQNIFVK
>SEQF1778_EEI64729.1 ATP:cob(I)alamin adenosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGLCQMKIYTKNGDKGQTRIIGKQILFKSDPRVEAYGEIDELNSWVGYTRSLLTPQTAKLSNELEEIQQLLFDCGHDLA
TPAEDERHSFEFHQKEPTAWLEQKIDTYTETVPAVKKFILPGGSQVASALHVARTTTRRAERRIVLLMQEEEINQDVLTF
INRLSDYFFAAARYANYLDQQQDVLYRNSKDVFH
>SEQF1778_EEI64730.1 aminotransferase, class I/II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKIHHGGNVEEIAEKLNVPMEKIKDFSANINPLGFPSDLWNVLVQSFANIEVYPNPKYPELKKAIAQHLGINSDDVFVG
NGATEILDETIRAEKATDALVLAPTFGEYERLFERIGVKTHHYYLQEENNFALEINELIDLLKTHHEITVICLTSPNNPT
GQMISLKDLRKLADFCNKHHRLLILDESFIDLTIDEQPSFVNELTDQDRVYIVRAATKFFAIPGLRLGYGITKNAKLKTL
LKIQENTWSVNGIADVFGQNMFRAKKYIELTHQWLDVQQPALYDALKKIPAIKVFPSITNFFLFKCTEPDLREKLIRQRI
LIRQCDDYEGLGAQYYRVAVKGPQDNVLLVNTLKKILGRDER
>SEQF1778_EEI64731.1 cobyrinic acid a,c-diamide synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKVLIAGVTSGSGKTTAVLGILKALNDQYKIQSYKVGPDYVDTKFHTRITKRPARNLDNYLVPEPATLNYLFTAGTKGI
DLGIVEGVMGLYDGLGTDKDAYSTASIAKQLNIPVILVINARATSTSAAAILKGFIEFDPAVPIKGVIINNVMSKNHYEL
VAGAIQRYLNLPVLGYLPHNKVMSLPSRQLGLVPDDELPNIDKKISLIAEEVKKHVDLEQLVEIASPLTRVDSDPFSGIK
VKLRLGIAKDKAFNFYYADNLSLLKKAGVELVPFSPLKDKKLPNVDALYIGGGYPEEFAAQLAANTAMKNEIMAFSQARK
PIYAECGGLMYLGKTLREENKTYSMVGVFDGESQMTSRLKKFGYCVAYPKQDCLLGNAAQKIIGHEFHHSTFIPLDKNLT
SVLNMQKIRDNKIVDTWDGGYQVRRTFASYLHVHFYQNRQLFIQFLRNLGAEVQ
>SEQF1778_EEI64732.1 cobalamin biosynthesis protein CobD [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNIVIMVLLAFILDLLIGDPHPWPHPVKAIGRLIAVLTKKFNKPEYSRKKRKYLGVATWLITVGGTGLVAYIVMRLAMFN
YYLYMIVGTYLSYTCLSARQLAIEAEKIMKSLKQGNLKKARYQVGMIVGRDTENLSAEEVTKATIETVAENTSDGVVAPL
LFLVIGGPVLGLMYKAINTLDSMVGYRNEKYRDFGEFSAKVDDIANYIPARLTWLFLIISSWVLRDDTSEAVAVGKRDCE
KHLSPNSAFSEAVVAGALHLQLGGPHYYFGELVKKPYIGNNHLVVAANWHLRRTITMLYMASLLSLGCFELIRLLIIWK
>SEQF1778_EEI64733.1 cobalt-precorrin-8X methylmutase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKESYITIPHQITDKSFQIIQEEIEKIDPNYQFESPLQEAVIKRAIHTTADFDYLKNLKFTHNVLEKIKNVLMNQGVIY
TDTTMALSGINKRRLDKLGVSYHCLIRDPRVIEMAKEKGITRSMAAVEVAASDSKQKIFIVGNAPTALCKIIEMVNENQL
ETAAVIGVPVGFVEAAESKQALYESNIPAIAALGRKGGSNLAAALINAVIYNMDIEKLGDEYGRHTKQ
>SEQF1778_EEI64734.1 cobalamin biosynthesis protein CbiD [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNMAVTPNNNSEDNYVYYNGRKLRKGFTTGTTATAATVAAIRTLLNQEPQETVTVHAANGKTAIFDVEQTDFDEQQASCA
IKKDGGDDQDATDGTLIFATVKLRDDNEIHLDGGKGVGRVTKEGLANKPGMPAINPTPRRVIKAAAREELGEKRGVDIVI
SVPEGERIAKLTYNPRLGIVGGISILGTSGVVTPMSESSWKHSISIEMNIHRKRGDNTIVLVPGNYGEDFAKDELGIPNA
KIVQMSNFVGYVLHETQRLGFTKVLIVGDLGKMIKVAGGIFSTHSKDADARAEIMVANLALMGGVPTAFLRKINQCLTTI
SMIKMIDEAGYQDVYQMIADKIKLRAEKLLAHREPHVEIDAVIFSRESGFLAASKPFQEIKGEWQ
>SEQF1778_EEI64735.1 precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITVLGIGPGDQEYMLQGTHKYLAQADVVIGSSRQLAIFSDMAEKHMKLPRLAELKDYLEANPQKNIVLLASGDPLLYGI
GTWVKNQLGSQNIKIVPGISSVQYMFHQLQISMNDCYLTSSHGRTPDFDFLLKHPKVGMVTDKVIGPYEIGQEIKKRGLH
RIIYVGEKLSYPDEQITKYDEQTIENRDYEMNVVIITNA
>SEQF1778_EEI64736.1 precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRDDEFLRNKVPMTKSEVRAISIDKLDLSNKKSMLDVGAGTGSISIQAAREFKQLAVTAVEMNPDGIDIIQQNINKFGLN
NIKLVQGTAPADIPDQKYDAIFVGGSGTHLNEIIRFASTHLNEGGAIGLNFILFENAMQVEKLLQDNGFKEIELIEVGVL
RWHKLGKGHFFKPNNPTIIVSAQK
>SEQF1778_EEI64737.1 precorrin-4 C(11)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKMAIVSFVGAGPGETDLITLKGYKLLSEADVVIYAGSLINTDLLDYCKDGAEKYDSAKMTLDDIVDRMEESVKNGKSV
VRLQTGDFSIYGSIREQIEEMKKRGIKYQCVPGVSSFLGAASSMGVEYTVPEVAQSVIITRMAGRTPVPEGESLKSLAQH
QTSMVIFLSVQGIRKVVEQLEEGGYPSDTPAAVIYKATWPDEKVVRGTLADIAEKVHDADIRRTALIMVGKFLGDEYNYS
HLYDAGFSTMFRKKSK
>SEQF1778_EEI64738.1 CbiG [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRFVIIALTAGGAKTARQLQEHLQEQSYHTEVVLPQRLAQGKENYYPKGEFTATMHRLFKQYDCVICIMATGIVVRSLA
AVIVDKTVDPAVIVMDEQANSVISLLSGHVGGANQWTRLIARLTGATPVITTATDTEKVQSLDILAKRVNGWYPNFKENT
KKINRLLAEGNKVELYIEPYLRHYVKQFDGFEVLTKINEHQDGVPLVIVSDRSGFAKNKDAIHVIPRVNVLGIGCRKNVT
NEMMQQTFAEFCAKHHLLWESIVKIASIDIKKNEPAIQYLAQVFNIQVEFYSAHELEHASVNYPESAFVLKTVGVGNVAC
AAADYASGERNATERYANHEVTIALSRLHEI
>SEQF1778_EEI64739.1 precorrin-3B C(17)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLYVVGLGPGSKELMTEEARQVIENTHTIVGYATYVRLIEDMIEGKELVVTGMRGEIERCKKALEIAATGKDVAIISSGD
AGIYGMAGLVLELAGKMDTHVDVKVIPGVTASIAAAAHLGAPLMNDFCHISLSDLMTPWDVITERVDAAAKADFVICLYN
PRSKGRPHHLRKALDIILKYKSPDTVVGIGKDVARPKEIDKVTTIKDLDETEINMTSIVIVGNKNTYVEDGRMITPRGYT
L
>SEQF1778_EEI64740.1 precorrin-6A reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILLLGGTTESLAVADELTEHKVPFVLSVISDYGAELARRHAENIVEITFTDESLLSFCHDNQINFILDATHPFARVISQ
LAMDKANELQIPYLRYERQNIYSKNAKLKMVDSLEEACEYLKTVKGNVYLSTGSKTAPEYAEKLGVDRLHVRVLPTTRVM
ENLTATGFIASQIDAIQGPFTVALNYELFKRANSVVVVTKESGRQGGIQEKIAACEQLQIPCIIIRRPQLNYPAVVADLS
ELKEYLEENYEW
>SEQF1778_EEI64741.1 uroporphyrinogen-III C-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSGRVTLLGAGPGNPELLTLIGKRRLGEADVVLYDRLIDPSLLSFTNDDATLVDVGKMPLHHKVKQSQINEMLVDYANLG
KKVVRLKAGDPYVFGRGGEEAQILQQQGINFEIIPGITSAIAGLAAAGIPITHRDFASSFHVITGHHKKDGQQLDWENIA
NQEGTLVFLMGMAQLPNICHQLIAHGKAVETPVAIIQWATQWRQKMVSGDLSNIVELVNKNGLSSPALIVVGNVVKLSKQ
LNVAKPLAGVHVLVPYSKRQRLFNCLEDLGATADFYQRSIVESAPAKLPVLDSYSSILFDDYLAYKEFIKLLTASKKDIR
ALVGKKILAGNQSVANHLAKQGLLVDEVVATNKLSDDVLEVGGQNSSYSHKEFLSLYQRKEQTHELPFDLAEFNAVIFPS
TASLRDFKSTLNEEQFKQLKDLTAFVMGQSIYDLATQNGFKKVINCQPNIKATIEQVKEELASE
>SEQF1778_EEI64742.1 cobalt chelatase (CbiK) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKKAILAVSFGTTYPETREKTIGATEKKISEEFPDYDVFRAFTSTIVRKRIYKNEGIKVDSIREALDKLKAQGYEEVYL
QSLHIIPGIEYQLVQNAIDNYSPQFEKLVATPPLLDKFADYEQLVNFLEKQSAYLPSGKAILWMGHGTAHSAFTTYACLD
HMLAGTKSYVGAVESYPDVHDEIKRLKHAKVEKVYMQPLMMVAGNHAHNDMASDQPNSWKTILKENDIVGHPVLKGLGEY
EEIQEMFIAKLRTTIERG
>SEQF1778_EEI64743.1 precorrin-2 C(20)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASFYGIGVGPGDSELLTVKAINTIKNLDVLYVPQAHKGSKSVAERIATPYLPATLAIKKRHFPMVKDWDTKMESWRKIA
DEIKDDVQQGNNVGFLTLGDPSVYSTFSYLADILIPVIDVQTIAGISSFSQIAASLSIPLMLDEESLEVVPATADKEKLA
KVIDLNDNVVIMKIATNFKKVYQILKERKLLDKTVIVENASMANQRVQRLTEYSADDQLPYFSTALLKKKEA
>SEQF1778_EEI64744.1 cobalamin biosynthesis protein CbiM [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGALKKYRKFMLFLAIGFIYTLAYPMTAHAMHIMEGMLPPKWCIFWFVVSAPFFIYGLYRMHKIVNSDIPNAKVMLALCG
AFVFVLSSLKLPSVTGSCSHPTGVGLGTVMFGPGVMSVLGVIVLLFQALLLAHGGLTTLGANEFSMTIVGPIVGYAVWKL
CRAMKVRRSISLFLCAMFADWSTYVTTAFQLAIVFPDPNGGVGAALVKFLGIYAVTQIPLAIAEGLLTVIVYNLVISNDL
WKESALQ
>SEQF1778_EEI64745.1 cobalt transport protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKRTKTNIILLICVILLVLIPFIFVKGEYGGSDDQGTEQIKKFDPHYKVWAQPVWTPPSGEIESLLFTVQGSLGTGVIC
YFIGVAHGKKKARENSKNNGKQQVTGK
>SEQF1778_EEI64746.1 cobalt ABC transporter, permease protein CbiQ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLSIDKYAYENRIVNWSPKLKALLWLGGIILAFQPIQWLKLAVLVVVAAITIYVTKVSFRRYLSWFYAIIPFVLLSIIGI
VVTVSPQRSALIWPIKFGSVYIGMAKVMMPKAGQMALQCMTAIVCTYWFALTTPFIQILQVLKAARFPRVMIEVTMLMYR
FIFIFVDAFDQIHRAQKLRFGYDSFGLMIHSSGILAKMLFEQVIINYEMMTKALDAKLYDGEFYI
>SEQF1778_EEI64747.1 cobalt ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIELKHLSYSYDDRVKILDDISLKIGADNHKVIGFMGHNGAGKSTLFLNLVGELKPTSGEILIDGEPVEYSKKGLRKLRR
KIGIVFQNSDQQIFYSIVKDDVAFALHNLKVPSEEINKRVEKVLSELDILPLKERPIQYLSGGQKKRVAIAGMMVIGSEW
ILLDEPTSGLDPDGRIRMQKLIQKLVNNGQRIILSSHDMDFMYETCDYFYLLGKGKILKQGDKQTVFDDEQLLRENKLDQ
PWLVKIHQKLGLPLYDSEQELFAIEGKHN
>SEQF1778_EEI64748.1 cobyric acid synthase CobQ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSAQSIMFQGTASDAGKSWLVAAVCRILSNQGKKVVPFKSQNMALNSFITDIGDEMGRAQVYQAEAARVKPDVRMNPILL
KPSTDKDSQVIVMGKVLADMDAASYYKFKPQLIPQIMEAYEGLASENDAVILEGAGSPAEINLNDNDIVNMGMARMVDAP
VILVADIDKGGVFASIYGTIKLMPLEDQRRIKGIIINKFRGDKSLLEPGNKMIEKLTGVPVIGVLPMSDIDIDEEDSVSL
TRKSRQKEAGKALDVAVIDLDKISNFTDVHSLEIQPDVSVRYVVKADELGTPDLLILPGSKNTNEDLAALKKNGLYEEIL
RAHQDGSKVVGICGGYQILGRKLYDPEAIESPIKEQAGLGLLDTETTFNEQKTTTQAVAKRKNYTLKGYEIHMGTTKLGL
NATPFSVIYTTNGQSESREDGAVSSDGTVMGTYLHGIFDNPYWTRHFLNKIRTSKGLAPLVNTNVSISDYKDQQYEKLAQ
LFEQNVDMEKFEQILHDSTKSKG
>SEQF1778_EEI64749.1 siroheme synthase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKMMEAPYPIILNLAKKNVAVIGGGKVAHRKIKKLLLAGVVPTVISPELVANIDQAKINWIQDIYRRKYVEEMDIIIAC
TNDAQVNDRVKAEATHFQLVNNTSDKTNSDFYNLATLSSDDMFISISTMGKSPSVAKKMKNEIKEWVSKRFHKEFE
>SEQF1778_EEI64750.1 glutamyl-tRNA reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MCVSLNYHQLPIELREKFSFSADEIPKANRLLNAEKSILENLLISTCNRTEIYAVVDQVHTGRYYIKRFLAEWFHYTVEE
FNQYVSITTKDDAASHLFRVIVGLDSLIKGEPQILGQMKNAFQVATDQGTTGVILNHLFRQAITFSKRMHTEYRVSELAQ
SSSQAGLHQIKSDFGSLEGKSLAVIGLGHIGKHTAYNASNMGFSKVLLLNRTDQKAKQIANELQGVVEARPFSRLDSVMA
EVDAAVFAASVKEPLYRVTDDRQQVIVDLGVPRNVAYDSESVNYYDIDNLHSILETNDTKKNQMLNQIAKEIPLEVNNFY
VWEKQLHIVPVIRGLREHSLKIEGEAYDSLLRKLPELNAHERKVISKHMKSIINQMIKGPIKEIKELSVTPGATSDIDFF
CKIFGMDNLKVENQENDR
>SEQF1778_EEI64751.1 hydroxymethylbilane synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTDKVIVGSRKSKLAMAQTKLVIASLKELFPTTQFEIKNVITEGDRNQQASLAKIGGKGVFVKEIEEELKNCTIDFAVHS
LKDVMPVLPDELTLGAFPKRVSPFDCLVSRQEFTSLDALPHGARIGTNSLRRQGQLLNVRPDLKIIPIRGNIDTRLKKID
TENLAGVVLAEAGLDRLSIDLSSYHQLSLKDIIVPAVGQGCLAIECRKADERVRKMLDQINDPQSAKCIHIEREFMRELG
GSCNFPIGGHAYLQDQQIVFDGLIASPNGEHLIKEVAVPANKPGVGKVVADQLLAKDNFGIIEGD
>SEQF1778_EEI64752.1 porphobilinogen synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQFDRHRRLRTSAAMRDLVRETHLNKDDLIMPVFVDATINGKEEIPSMPGIYRYSLDTILDEIKEIVDLGIKSIIIFGV
PEKKDEVGTGAWEENGIVQQAIRLIKKNYPELIVIADTCLCEYTSTGHCGILKDGIVLNDESLEYLTKTAVSQVAAGADI
IAPSNAMDGYVAAIRQGLDEAGFKNTPIMSYAVKFASSFYGPFRDAADGSPKEGPKDRKTYQMDPANRLEALREVASDEK
EGADFVMVKPAMAFLDIMREVRNHTLLPLVAYNVSGEYAMVKAATANGWINEDQIVYESLVGMKRAGADLIITYFAKDVA
KKL
>SEQF1778_EEI64753.1 glutamate-1-semialdehyde-2,1-aminomutase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKNFNLLGGFILSKLNTTRSKAAFKEAQKYMPGGVNSPVRAFKNVGGDPLFIDHGKDEYIYDIDGNKYIDYVLSWGPLI
LGHADDQVVAELDKAVAKGTSYGAPTLQETELAKIVNKIMPSIEMIRMVSSGTEATMSAIRLARGYTRREKIVKFVGNYH
GHSDSLLVDAGSGLATFGINTSPGVPDDLAYDTLTVAYNDVDGVKKLFADHGDEIACAIVEPVAGNMGVIPGTQDFLQTL
RDVTKEHGSLLIFDEVMSGFRAAYHGVQSLVNITPDLTTLGKVIGGGLPVGAFGGRREIMEQITPAGSIYHAGTLSGNPL
AMTGGISTLKQLTPEDYVEMDKKVTALTDGIKQAADKYGVPMTVHHVGTMWSYFYNSDSINNFDDVKACDQKLFEKCFWE
LLAHGVYVAPSQFETNFISTKHTDEDIEKTIAAFDAAFNAATK
>SEQF1778_EEI64754.1 putative adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKQNLTLVLGGAKSGKSEFAESLYSRQEKVCYIATGVVKNPDGEMQLRIKRHQERRSANWTTREQYRDIAEAIEDNPLD
GYLLDDAIMLVTNLFYDFVLTKTTPERIDAYLEQTSSTEIAKIRQMILDEWTKILIAQKQNSQSMVIVSDEVGLGVVPAT
KQTRILRDLYGEVNQLIAKKADDVYFVISGLVQKIK
>SEQF1778_EEI64755.1 cobalamin-5-phosphate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKDALILFGQFFTKLNIPIPVDDATNKFKTSIQYITLFSFLLGCIEGLIFWGFTYLFPLWFAWILYWITDGLLTGGFHLD
ALADTADGFFSSRTSDKIFAIMKDSRLGTMGSLALVYYYALVVGLGIVISRYLTLTHMILLTICLTMLTKAGLSLLFYKM
VYPGNKKGLSNIWLGIKPWRIVVAQFFAIIVVSLCFSWQGLVSYLMIPLVAFFYRRKVTKVLGGTPGDTLGAFASLSPLI
FLITLTILLRFGL
>SEQF1778_EEI64756.1 phosphoglycerate mutase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLILARHGETNYNHLRKFYGSADVSLDEKGKRQAQELAEKVRKLQPTLFVRTNLQRTKQTISATEAFFPTTPTIIIPDL
AEKGFGNWEGLDADEIETQYPEDWEKWLSAPLTYTPATVEPFDYFRTRVQQGLQWLLEHVTESDVVFIVAHLGSLRLIYQ
ELIDPTADFYSLDFKASCYSTIEFRNGSVYQWEMNQ
>SEQF1778_EEI64757.1 hypothetical protein HMPREF0534_1990 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAILITYPKHKIPIYWRMRLEQQEDVIYFPFRVLKPVKLSREEIQQVKKSATLVITSLYGAKVFIEELSKLNKAATIYVL
SDKIKKVLQEKIKNPIKVAESENRNALLKDLEQQEVTSVCWLIGDKAEKYYDDFIGSKVVIYQNTWDKLHASKGLKIFLK
HQITSILVTSSSNFDRMYEVMTKVDSSDYKHVNYYVLGTSTGKYLATKGLKVKVPTEKRDVLAHVLESIWQSERNK
>SEQF1778_EEI64758.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFNEVRCQPLSKEAMAKMQARLDNLAKPVKGLGRLEELADHLAGIYGTSDFDVKPRKCLVFAADSGVVHEGVSASPQKI
TAIQAVNMMNGHTAVAALAKAFNCHLQVYDIGINAELNSPLVEENKIRQETGDMLVEPAMTVDEARRAVQYGFDKGIEAY
QAGNQVIAVGELGMGNTTAASAIIAAILGKTGEEVAGRGSNISDERLKHKIAVINKSLDRAGFSGKKNNDALTVLSEVGA
LELGAMAGAILAAGAMRKPVLLDGFLSYSAALLASTINPEIIAYMIPTHKSKEHGSQIVLQALGLAPYIDIDMCVGEGSG
AMMILPWLDGIKSVLENMNTLQEMDFNFIP
>SEQF1778_EEI64759.1 SNARE-like domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNAWITEFINQFGYFAIALLIALENVFPPLPSEIILTMSGFMTTTTSLSIVGVIIAATIGSLIGALILYALGRQLTVKRL
ERLLSHRLFKLLGFHQDDAKKAADWFNKHGTGGILYGRCIPVIRSLISIPAGIAQTSLGKFCLLTTIGSAIWNTLLVVLG
AWVGQSWNKIVIIFNDYTTIAIIIMAIVGLYFAYRWYQKRI
>SEQF1778_EEI64760.1 transporter, dicarboxylate/amino acid:cation Na+/H+ symporter family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGWQIMIGLALGIICGLIFYQNKGAITVMQSLGTIFIRLIQMIVMPIVVSCLTVGIANIGDIRKLGRIGGKTLIYFEVLT
TIALILGIVMANITHPGSFIDIHKLHATDISQYMSTAKSAEHSSGFWPLILSIIPTNIFKSMSDGDMMPVILFSVLFGLG
IAAVGEKAKILIDVLNAVSEVMFKVTNWVMKFAPIGVFGLIGMTIAEMGISALLPLGLFIVIAYVTMLIFIIVVLGITAH
IFHLRYWKTMRAILDEIVLAFTTASSEVTLPRLMKKTHEMGVSKGITAFVIPTGYTFNLDGSAIYQSLAAIFLAQAYGLH
LSISHQITLLVVLMITSKGMAGVPGASFVVLLASVSTIGVPMAGLTFIAGIDRFVDMGRTAVNVVGNSIATLVIGESEGA
LDREKYNAYLDNYGKEKPSTETDVEAE
>SEQF1778_EEI64761.1 transcriptional regulator, AsnC family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKIDRKIINLLQKNARASLKELSKECFISSPAIAARINKLERNGIITGYHTSVNMEKINFHVKAFIQVQLEPRQKQEFY
PYIQQIPNVIECNCVTGDYSEIMEVVFPSTTDLDNFINTIQQRFGKTSTQIVFSTSVDHRGVKLAPAQDTVSSEKE
>SEQF1778_EEI64762.1 universal stress family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDQEYQNILVPVDGSQESEFALHRAIAIAKRNGAHIDILNVIDTRAMAYNFAGMSDGSIAYQLVDKSKQYLDELLKTAKD
KDGFDNLDIHIRLGNPKTIISFDFPRDHHNDMIIIGASGLSRMQRAVMGSVTSYVKRNAPVDVLVVRTDVDQVK
>SEQF1778_EEI64763.1 hypothetical protein HMPREF0534_1917 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADEITKRVSLVELFYDLVFVYMGSRATEMIHHLHHGIVGLLVLGIFAIVVIVFINSWMVQMVFTNRHGKISGTNVIFSF
VDMAILLYMSNSFSTTFDWHLAIFFIAAGLLSLTLCIQYVLVYF
>SEQF1778_EEI64764.1 hypothetical protein HMPREF0534_1918 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIDKQITRAFAGILIFRTVTLFIGGIFYQSRVRVRIAFAGIIISWIAPGFTGKYTKHHPIIFSHLLERLTALIIVMFGE
TIVGIADYFTATSFSIQSILILTTVAALFFTYIVEFDHLINEHQRHETGNLMIYLHYFILFGLSLITVAMKFIDDAEAHP
RFAGTCMYLGFALLYIGLAIANYYNKVKVNKTVVSIFIHKFARIPHFYK
>SEQF1778_EEI64765.1 hypothetical protein HMPREF0534_1884 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMELKIERIYTKPVDLDGYRILVDRIWPRGISKENAHLDKWLKEVGPSTELRKWFGHDVARYPEFKERYLAELTNNPVYY
NSLKAIVQSKLPSQNVILLYGAKDEEHNQAIILADKLQKDLQLAIK
>SEQF1778_EEI64766.1 DNA-3-methyladenine glycosylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFRIVLFRRKINMLTKYQQFFTGRPTVEIAKDLLGKLVKYQTKSGIIGGYIVETEAYLGEKDSASHAFNGRRTGYSESLY
GMPGNIYLYQIRGHYCFDIVVQDAEEPQGILLRGIEPALNIDKMIENRHMSGVNITNGPGKLVQALGIHSRDLDGQPMET
SPLTVDLHNYKIPGEIAISARIGVNLKGKDGLSPRRFYVKGNPYVSNVKKQDMDLECHGWKG
>SEQF1778_EEI64767.1 hypothetical protein HMPREF0534_1886 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALTYQQLLTAVPVVLDAGSVPNIVGDAGIGKSALVREIAANLNAALFTTVVSLSEKGDLAIPVPPLTSESFVETKNYGR
LANVQFGYSETLISIIKYAEAHPNQSIIWFLDEFNRGTQAVQSELMNLVLQRKINALRLPSAVRIIIAENPDSTMTGFTD
REYGVATGDAAIKDRTVRLVMTSSTAEWLKWAQATGINDLVSAYLTQYPEQLLVVDPNNEDLAPTPRAWERVSRNLDQLQ
ALDQKMQKELAADIFSGDLGDEVGVAFAQFVLAQGQELTVATLKDAKDGKEQFENADEATKIQVLRSWLSPKLASEEEAA
LFIKYLQLVSEDGQYAIVQTVGEDFVDLLQVMYEQAIKHPQGSVAQLYQYFAEVATSGDNR
>SEQF1778_EEI64768.1 hypothetical protein HMPREF0534_1887 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLGDFLARLHQNDGSNNHVTSAQRIREAIIIILQKQRLFGEVLLQLPRENDLQLPAMMGLRWEDNRLVLVINPEKLANV
RNDELQSLLEHEALHLIWMHPLRYASYPHQDLVQIATDVAVNQYLTEPPQGTVTLSQLEKVLRQKLMPKLDSQDYLNILE
QLPAEQQEKLHQPGLKLSGSKQKENATADEVKTPDTHNGWQESKTSQQVSNQIVRLANIKRILNNSWRQTPQRDRGLLPG
NVRSQLQKVQKTKIVDWRQVFRHQFGLIARGQVNSHARFNRRQPLRMDLPGKVTRLDPAVDIFVDNSGSVTDQEIVQTLT
ILEKMLKKTKLTANVYSFDARVTTKQKLHDGKKLDFRRTGGGGTSFQCIFDYLHQHHLTKRNRIIIITDGWGEERINDYH
YQNVYWLMMTKANQLSVKEPPGRVLEMRG
>SEQF1778_EEI64769.1 hypothetical protein HMPREF0534_1888 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTILNPQAMQKVLTHSKEYERAIGLLNKRWDPYEQPIFRNVLQSADVQFARQLQIAGLIKGKVDLSNYQEVNQLLMQHD
SWFSESARKTLLSPFLD
>SEQF1778_EEI64770.1 peptidase family M13 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVNNELIKDDLYEAVNGEWLKTAKIPDDKPATGGFNDLVDEIDKQLMDDFDAYAAGKEKSDDSRFNEMIKLYRLAKKFD
WRKKVGPQPLKRMLASVENLNSYEDYQSQWKNWILAGMPSPISFDIDADMKNATVYALFASSPSLILPDKSYYEAEKKAQ
HDQLLQLWSSMVEALMDKLGYSKEEAKKIIDDAIKFDALLAPNVKSAEEAADYSKMYNPQTVAELAGATDQLDIAAIIKQ
LVGEEPEKVIVTEPEYFKALNKILQDNFELFKNWALIRVIRENASYLDDEMREINGRYGRALSGSKKPVSQRKFAFYLAR
DMFSQVAGDYYGKKYFGPQAKADVHHMVEQMIKVYKGRLTNNQWLSKDTRDKAILKLDKLGIQVGYPDKIPALYDQFKVD
EEESLIANLNQLIVTANKELFSRWNTPVDRMRWEMSAATVNAYYHPFKNIIVFPAAILQAPFYSLKQSSSQNYGGIGAVI
AHEISHAFDNNGSLFDEFGNLNNWWTDEDSAHFKQLAQKMIDEFDGIPFAGQKVNGKLTVSENIADAGGLSCALEAAKTE
ADFNAQEFFINWATIWRMKATEQYMQLLLSIDVHAPQKLRANIQAENLDDFYTAFDIKPGDEMYRAPEDRVHIW
>SEQF1778_EEI64771.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLYRYQKGWTQQDVAERLLISRKTISSWENSRSYPDIFMLVQISDLYHVSLDDLLREDHEMINNYKEEHTMNKRVDKIF
VLCYFLNIIGAVVIVLKPILPFLSNYLPKPVFTIISFVIVSSFIILVSYADWSKIKNKPGFWITWLIITLLEVRLTFPVN
VPINDNGIGYIFGALTGNVLVALCLTCIVWLFPQFKERRAK
>SEQF1778_EEI64772.1 macro domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPQINVIKGDITKIKVDAIVNAANTTLMGGGGVDGAIHRAAGPALYGACEKFHGCPTGEARITGGFNLPAKFIIHTPGPI
WHGGDNGEDQLLANSYHNSLLLADKHLCRTVAFPSISTGVYAFPLEKAAKIAIKTIKDFLPTANYVDQVTMVCFDDKTFT
AYHSQPY
>SEQF1778_EEI64773.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKHAKLRSLTFILVAFMLGCNEFMVVGVLSDIARSYHVPLSTVGFLVTAFAGVYAISTPIITTLTSNWNRYNLLMLLMTV
FFIGNTLTAMAPTLGWLLFARIITAAVAGTIISLINLLVSIITPMDKRPMVLAWVGAGFSIASVIGVPLGTTIATLLSWH
DSFWIISGLTLIVFALLVWLTPRDTPQIKGSILEQLALLKDHRVLLGIGITVAVLSLQYTFYTYVRPLITTVMDFSLTSL
NWLLLLLGVMSIIGNEIAGIVASHNGVQKLPFVFILMTILSLILGIALGNKITGMLVLATLCVVVIIYGTTIQLVFISVA
EKEYPQSLALATSLISIFANVGISLGSFTASTTANFANLTMLGYVGAVYGLLAIGLSFALRCFYRK
>SEQF1778_EEI64774.1 phospholipase D domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDIVWTWDVIRRIIEVLWLINIAFAVWTVFRSRRDIASTWAWLLVLTILPVVGFILYLFVGRQLSHDEIFSIQDEQKQLR
TKYLEKQRKLSEEHELMPKGSRLSRDRQSVNLFLSLNDSVVTFNNKVHVFIDGKKKFDKLIDDINHATDHVYIEYYSFYA
DNLGKRVLAALEDAAARGVKVRVLYDLSGSHGTTFKFFKHLEELGGEAQAFIAAAKAYFQTPRLNYHLHRKLAIIDGKIG
YIGGFNIGDQYLGEDPKFGYWRDTHLRVVGQATMMMTVRFAMDWNTTCRKTHKKKIDLEKEFKNFELVAPDSDPDEVPMQ
IVSSGPDNENYSIRRGYESIISSARKYVYIQSPYLIPEDSVLEALVIAARSGIDVRIMIPCMPDHPFVYRATEYYAKYLV
NNGVKVYKYDNGFIHSKTMVSGSNIASVGSANMDYRSFRLNFEVNAFAYNEKLTAQLKQDFENDMKKSMLLTPEYFANQS
KWRKFKQYFSRLLSPIL
>SEQF1778_EEI64775.1 transcriptional regulator, MerR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGVVNMYTTGQLAKKCNVSIRTIQYYDRRGLLHAKRTENGLRHYNDQDLKQLQEILIYKQLGFSLKDIQQIINDTDNNI
LKSLIVNQRRKLKQEIKDASEQLASLSQLETFLNKHSDFPGNISQSIFDKIKKTKKLKQLRIKLLLIGISIDFILWGSIL
YFLFYQGNLIWLLLGILITVALTWYIAINYYHHTCYICPHCFHKFRVSLSKWLFARHTPNTRYLTCDKCSQKNYCIEEYY
>SEQF1778_EEI64776.1 cysteine synthase A [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKITNSIVNLIGNTPIVKLNRVVPEDAADVYVKLEFFNPGGSIKDRIALAMIEEAEKAGKLQAGGTIVEPTSGNTGVGL
AMVAAAKGYHLVITMPETMSVERRKLMQGYGAELILTPGADGMKGAIAKAEELVKEKGYFMPMQFDNPANPAIHEETTGK
EILEAFGDDIPDAFVAGVGTGGTLTGVGHALKKANPNVQIYALEPAESPVLKEGKGGKHKIQGISAGFIPKVLDTDVYNG
ILEIKSDDAITMAREVGHQEGILVGISAGANIKGAIEVAKKLGKGKQVITVAPDGGDRYLSTELFNY
>SEQF1778_EEI64777.1 homoserine O-succinyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTADPLRIGILNLMHDKVDTQLRFTKVLSEGSYNVDVQYFYPQTHYTSRPVPDIVQEISQPLDFKQVATIDAFIITGAPI
EQLTFEEITYLDEIHQLIDVLVANNIPQLYICWGAMAAANYLYDIPKFQLPEKIFGVFHNYLRAQDPLLKGLPDGFLAPH
ARYAELDIDKIMKDPRLVINAVTKNNFLFSFRAREKNQYFLFSHLEYGKDALLKEYLRERNANPGVEYIKPQNYFRDPLH
MKDPEFSWATTQRVFFDNWLHSVADHIATQQFVKE
>SEQF1778_EEI64778.1 hypothetical protein HMPREF0534_1897 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMLFFKLINSSFKRNLKVYIPYLISMTMLVAINYIFKAVEINRSLKDLPSAAVTKALMQTGSTFIILVTLAFMIYVNRFL
WQQRQQEMGLYSMLGMTRHNLQVLTVIEKCYLLVISLFLGTLFGIIFDRLAFLGFAHLLQIDHLSQPWIEWGAVINTIVI
IGGFFLILMVIDLIKLFRLNPNELWHPQQTKIARHGKFFTFAGLVGVAVLAYAYYLTITVKPRISALTTFMTAVFLVVIG
TYLIFIAGSIIVLKLLQKNKGYYYRPRHFIAVSGMLQRMEQNGASLATICLLCSSVLVILFTSLTMYAGINDTVNSYAPR
DLTIITSQKLTAQQESTINSVAKKHHAQLNKPVTFTTSAPQYGYWENNRFINQGNLENMTNQTTNTVITMSTATYNQITD
KHVKLAANKALIYSPAKEHRGALQIGTQKYQATPIYAFHYYFNPSHAIYSPIFIITNMLPANTTTINFTGINYHLNGSKK
AHLNFENDLQAQLHLPNQVYSSRTNLRSQLTSLYGGIVFLGILISFALGITTTVVIYFKQITEGYEDQYRFKTMQQVGLS
EKETTKSIHSQVLMVFMLPVVGAIINLCFAIPAIRQILIQFNFYNVRLMIIIAVSITFILLCLYFAVYGLTTRMYRKIVE
QG
>SEQF1778_EEI64779.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLLNLQHVQRVYNPNSANPVMALKDITFKVEEGEYVAIMGESGAGKSTLLNIIATLEQATNGQAILNGQDLRQLSKDDA
ARYRREHLSFVFQHFNLLDSLSNRDNIYLPLVLAKTPVATMEERIKPLIDRLRINKIIDRFPSEISGGQQQRIAIARALI
THPDLLLADEPTGALDSNTSNEILELFDEVNANDQTIIMVTHSAAAASHAKRTLFIKDGRIYHELYRGDLSLKDYQQQIS
QTMMTLTNGGE
>SEQF1778_EEI64780.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKRYFKLFWRSILLPTIGYLFLLGLVGLLVILYNLPTVFWGDVIRFSLPFFIVWLIGSGAIKYYRLRHLNISQLDKFTP
TNMTEGKLVELLQDEQAKNIDTIRQLQATQHEQLDHLELFTHEIKNYLTSLNAAAENSPTVASTEVKKNIHQANYYLNLL
LNDERLAINNHDYDFQWIDIANLINNILQQNSAVFIHKQLIPELTGLDGIKVLTDRKWLHFCIEQLLSNAIKYSSPNSTI
NISWEMNSLRIADHGCGISMNDLPRIFDNGFTGKNGHRTTAATGMGLYLVKKVTEHLNFKVSISSVQSQGTTAILSFLPD
NIRSSN
>SEQF1778_EEI64781.1 response regulator receiver domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYDEFKSIYGETIMAKIFIVEDNPDIIHSTTQELNKWQYDVITVNDWQNVANEILATSPDLVLFDITLPTFDGFYWIQEV
RKHSQVPIIVISAAEIDTNVMHAVAAGADDYIMKPFAMTVLLAKIQALLRRNKQTTDAEEIMWDHNSFNPLTNILMNENG
TAQLTPTEGAMLQVLLSHRNKTVSKEQLLQWLWQGGKYLNENTLNVNISRLRTKLSTIGLRQCIHTERGLGYRLVENNE
>SEQF1778_EEI64782.1 oxidoreductase, aldo/keto reductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDIKDNLLTLADGNEMPQEGFGLYKVDGQATMNQAVKKAYEDGYRLFDTAQLYGNEQEVGTAFKQLAIPRDNIFVTTKVA
EENQGYDKAIESVKESLRKLQMDYVDLLLVHWPIERSFFDTWRAFEEMKKEGLTRSIGVSNYQMIHLQYLATQANEMPVV
DQIELHPLLTQKPLLEFNRQHQIVTQAWSPLGRGAVLNEPVLKDIAAAHNKSTAQIILRWHLQNGVSFIPKSVHEERIAQ
NADIYNFELNAQEMAQIDALNAYHRTGREPELVYEYNKQY
>SEQF1778_EEI64783.1 nicotinamide mononucleotide transporter PnuC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLAGSNHKIAQHIVEGVRLMISDYFKFLAHQLKGWPQQNYYLFFFSLGCQVMTLVSAPITRVTVITFIGTTLGVLCVLA
INAAKSVNGFLGILSALCFIIAGFSAKNYLSIAEQIAYVITLDLPVLLSANWNVNMASKIRKFNARSWTVAIIATIIVYL
VSGYLIGHLTDDPRPWIDAISFSISLSAGVICFLRFNNQYFWWLASGLAQLVLWFVSYKQGSATLAMAVNSSIYLINDVL
AFTISPWYNERERQRLSKEEAAYAKELGLE
>SEQF1778_EEI64784.1 transcription elongation factor GreA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFPFYHIIIISSKYNKIANIQGETIPMQRKKIQEAMKNVYFQKMTANGYHEIEEQIAKLKQQRPAKIGQLKAARALGDL
SENTEYSTAKRELRHLESRLRYLNKQLQYAEIVTPKNDHTIDLGTTVIIEFEDDHEQETYHIVGKQEADLAKQKISFDSP
LGQALLHKTAGITVTVEAPQSSYKVKIVKIEL
>SEQF1778_EEI64785.1 hypothetical protein HMPREF0534_1904 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEQEQHIDQFLTSSNYHQLSANQQKHAQDILTRFNNQMANDQHLTDTTWTPEAVKAVMVGEFIADPALTNQFGIAVVPV
LRAYQEFLKVENLAEVVKAMEEQRTKMNECRKAHKTWAQLHGDAENDEAEATSVQASPAKKEITWTPEKFKDLSANVQQA
IKSASQFNNLELDDVELNYVVQEFLELMVQECNEYPGQWTFSNLQRVLGMMMPLDPHISIKQIHNIVPSAQALFEYLKQN
DYINMDQYKLGLKAIANMQPSEDMLASLNRDERETQLVLSFINSNGIDTDDADVAEAWMDEHKQEVADFMRGLLNPWGEY
ERKRLLKRQREMQQKQQVAKSNDNQVDSQLKRKKKSLQGIKFSKKARRKLRRH
>SEQF1778_EEI64786.1 hypothetical protein HMPREF0534_1905 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSVEIPENMEEVAMQLAQHQVRGEQVDEKTVIQNAVRDILQAFFDEALEGHYDDVKWDGDDLVVTDIMGDEVGRIQPQSS
SFVDDFKNDADSLIERLENATAKIVGGR
>SEQF1778_EEI64787.1 hypothetical protein HMPREF0534_1906 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHEEELIMETRIFFNPGDSVANIHDYNEAVRKGQIFKQARHNDELVIAKDPNDKEYAIFYAKDALPAEHEKSKPYEIKNR
L
>SEQF1778_EEI64788.1 Raf-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQISVPLVNGMLADEYGKYAPAADMLADHPIKSFPIKITDAPADTKTFALVFIDYDSTPVCGFTWIHWLAANIPATLTDI
PANASRELADKFVQGNNSNAGSLVSGNPLITSGYVGPQPPDKTHDYTLMVFALDDTLPLENKYWLNDFIHAAKDHILAKA
QIDLPSRA
>SEQF1778_EEI64789.1 hypothetical protein HMPREF0534_1908 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANQRLLPIKNGYNFRDLGGYPTADGHQIKWHRLIRTGSLAHLDQNDLTVLDNIPISLDIDLRAPDEVKKDPDRVPSQAK
YYHLPVFEADETDASHSDEEIAAQMQQPGNGYHHMIDVYHRMTTAASAKQAYQKLFNLLLNNERGALLFHCTAGKDRTGM
AAYLILSALGVEQKIIMEDYLLTNTVTQDFRNHWLQDMRNHGASEALVTNRAALASVAPDYLNTAIKNITQTYGNINQYL
NNYLDITPTEIKDLRKLYLD
>SEQF1778_EEI64790.1 hypothetical protein HMPREF0534_1909 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNYQPTDLIKFASRTGRWTVKKINNMPTLYTTNLGSYLRFKVSNAKKCQITVLPNQNSLSPSQVFAFRIDDGKWQRVQA
SLGKIDIPLDSTLHTIEIMAAGNSDIDEVWKGNEGFAIKNIYLDNGAIMAAPQRPVVNFIGDSITAGCWVVGNHPAADYR
PETNYAGICADLLNVDSVRIAYSAGGVLRPATGGVPTADVFLGKIDNQTLWTPNHPDLNVINLGVNDRRFPLTQFIAAFD
LFIQQVKLTFPHAPLAIMIPFSQTFASAIRTIATKHNCSIIETKTWHHSFTDGLHPDQAGAITEGKMLAQALQPLLSQFS
VQ
>SEQF1778_EEI64791.1 galactokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVILMDKQQFLAEYQDVFKEPGKDVFFSPGRINVIGEHTDYNGGHVFPCAISIGTYGVYGPREDTTVAIYSANSAKEED
SKIITFDINDTEPQSAKDEKWVNYFKGMLVYLKQRGFKIDHGFNLYIHGFLPYGSGLSSSASIEMLMGNILKDEFNLDID
EIELVKLGQKTENDFVGLNSGIMDQFAVGMGKENNAIYLDCNTLEYKYLPLELGDYEIIIMSTNKNHSLAGSKYNERVQE
CEEAVKRLNKKLDINKLGELDSDTFDQYTSLIDDDTLIRRARHAVSENERTKKAIDAMEKGDLEELGRLINASHVSLKYD
YEVTGKELDTLAENAWDQPGCLGARMVGGGFAGSAIAIVKKSEAENFKKNVGKIYRDKIGYDASFYDAEVVDGPHKL
>SEQF1778_EEI64792.1 UTP--hexose-1-phosphate uridylyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLMEKFADQVIASGTYEPLDRIYVLNKIRGFVGDEDVEAKDDESVVSQLVDLAVKRGKIDDGQTAKEILNDQLYDLMTP
TPSVVNHKFWGKYQQSPSSATDWFYNLCTSNDYVKVAAIKKNVVFDKPTKYGNLEITINLSKPEKDPKAIAAAAHDTAKK
YPQCALCMENEGYKGRLGQAARSNHRIIRITVGGQQWGFQYSPYAYFHEHCIFLDSKHEPMEINRQTLINLVEIEKQFPA
YFVGSNADLPIVGGSMLAHEHYQGGKHIFPMMKASIKKELYFDEYPAVNAGIVNWPMSDIRLTSTDTEQLIDLGTHIIKV
WDQYSDESLDIKAFDGELRHHTVTPIMHREGDKFVLDLVLRDNNTNDEYPLGIFHPHEKLWHIKKENIGLIEVMGRAILP
ARLKDELNEVKKFWLGAENKIADSHLPWAKEVQSRINITEDNVDEVMEQELANVFANVLENAGVFKDNTAGNEGWQRFID
ALK
>SEQF1778_EEI64793.1 transcriptional regulator, LacI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVTLHDIADKAGVSIATVSRILNNDVTLSVNEKTRQRVLATAEEFNYTKHKRARNNQVQRVAVVQWYSLTQELDDLYYM
AIRMGIERAAQQQGLQTVPVYQNNMEEIPRDVTGIIAIGKFSDSQVQALRLVTSNIVFVDYDSLAAGYDCLVPDFENAVR
SVISEFVSEGINDIGMLAGTEKTTDQQIVPDLRRFYFESNLRQQNLYHPEFIFAGDYTSMSGYNAMKKAIATLGDRMPHG
IFVANDPMAVGALKAIQEAKINVPNRIALISFNDTAIVKYVYPSMSAVHIATDEMAHAAVDMMIKRLQNPNNDPCKTVVG
THLIKRQTTR
>SEQF1778_EEI64794.1 hypothetical protein HMPREF0534_1880 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKIALILMLSLTMMVMVACERTSSSTNRSTSSMTSSLSSTQQIRDDAALNAERLTLKQTAALVLYYRDAHMPGANDYDY
SADMENNNQGATVKIYDKGAVPWGEGSSAKTYPKGAKVLYMIKLTSKSDEDGDRLNSTYYTIVGNKVYYANSSNGIRKIG
VTLAEMVTYAKTHGEVNRVLKVAKNTKIIDMRGKVTITDKDGLTTQQLGTLVALLKNPDWFKAGVQNGEMYYGTHYGYGE
VADYQYVTTQGDLTSYIWFKRKGNDVTIKMIGSTENQNVTGAPMTTTHTTVTNLINNYYTSEDQQDEVNAYADQLKVEP
>SEQF1778_EEI64795.1 hypothetical protein HMPREF0534_1881 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKKDKYDVQKFTGIPVETDASGKYQLKFDQNGEAKLHTWRTGKHTKGKFKYPGQLMLTENNLTVVILKAEPMAFKDRHS
ETPLQRFLTVDVTEDVLKQGLAELKE
>SEQF1778_EEI64796.1 flavodoxin-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTLVIVAHPQLANSSTESFLKAAADDENNVMWHELKTPFDISQEQELLKSATRIIFQFPLYWYSAPAILKQWLDEVWNS
QLTSSHLLKGRELGIVTTVAHSASAFQPGASQGYTIAELLRPYQALAHAMGMKYLPPLPIYQFAQQSEEERQSLFIHYQQ
YLTLDKFLHFSNQTQWFIDHLNVKIAQELDPLQQAKLEQLLALLQDQQEELDDLHTSIGWLREKEDD
>SEQF1778_EEI64797.1 hypothetical protein HMPREF0534_1883 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKMDENQQWAHEELKKLMKNSPTYEDQAFYRALEQLMLEQAQRLVNAAGELDGRSWADK
>SEQF1778_EEI64798.1 hypothetical protein HMPREF0534_1871 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPEKRYTIKQLADELGVTKPGVRKLMTANFRKQYTETVGNRILINSAGAKVIRKHFRNNGDNVFPETKTETNSNKQKQAE
TVSDSDKNAVVSAQEETIKLLKEELKAKNDQLANMQKLMDQNQQLLLNTQAENKTLLALTHKNDAEPVKEAEYKETDQAP
QHPKHKVCLTSKK
>SEQF1778_EEI64799.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVLDVEGLTMSYADKKLYEDASFQLEKHEHMGIVGQNGAGKSTLIKILIGKTLPVDGTIKWQKGVKIGYLDQYVDIPVG
MTLIDFLHTAFTELYQLNDQMNKLYADYAEKMDDELLTKAGRIQEKLDANNFYEIETEVERVMNGLGLTDIGKDHVVSEM
SGGQRSKIILAKMLLENPDVILLDEPTNYLDTAHIEWLIDYLNDFDGAAMIISHDYDFLEQVTNTICDVSFGKITKYRGS
FQQAMRQKEERKEAQEREYEKQQVVIEKAQRFIRKNKAGSKSTMAKSREKMLARMKKIDPPEDNLKATFHFPYENTGSAN
ALRVEKLSVGYNRPLLAPVTFSMTMGEKLLFTGFNGVGKSTLIKSILKKIPALGGTATFSPSARINYFDQDLEWDDPTLT
PLQTIQNMFPTMQPRTIRTKLARAGINAANTMKEMNLLSGGEQTKVKLAILELTPCNFLIMDEPTNHLDDETKEGLKKAL
QDFPGNLILVSHEQGFFEGWLDKILNVEKLSLK
>SEQF1778_EEI64800.1 hypothetical protein HMPREF0534_1873 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSKRRGKRVPYSLSEIIVLFFTYSFIGWLWETCYCSIKDHHFAYRGFLFGPYCPVYGFAVTTILITTYPFQDNIFLLFV
VGFIVASIFEYVASWLLEKLFHMKLWDYSHLKGNIQGRVAPQISFFWGIGVVLLVKFVQPFIQRIINWEESWTHEMLALI
IVLVMGTDTILSVISVEKFHITTQQWDERAAAYRKELLDRLEKAAPKDKLAIKDHLQDWQRYFAQHLNKEGAGKQLSWNH
RRLIKSFPKLKMTDSKYFNNYKNELKSK
>SEQF1778_EEI64801.1 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKETKIICGSVLAFLIILFGIVAIIIHQSPQIQRETHPTDITVNEFVRQIAPAAQREQKKYHIPASITIAQAGLESNWG
RSRLANKYNNLFGIKANSDDEKVQMYTTENIRGKNVQVKQYFTVYNSWADSINAHTLLIVNGIADNHARFHGVQTAKTYQ
QAAYELQWNGYATDPDYASKLIYAIKKFNLAQYDNVK
>SEQF1778_EEI64802.1 branched-chain amino acid transport system II carrier protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQDLTSRKLTFKNYLVVASLLFGLFFGAGNLIFPLHLGQLAGSHWGPAAVGFLITGVLLPLLSVLAVAVTRAEGVFDIGR
PLGVGFALVFMVLIHATIGPLFGTPRTATVSFTVGLAPFVDKQYQSLALLLFSALFFGAAFLFSYRENDILANIGKVLNP
VFLALLFLVFVVGFAHPLGNPATAPTTSAYVHGALTNGFLEGYNTMDALAGLAFGVTVVTAVRSMGQRSAKDVSKVVAKA
GVLSMGAVAFIYLLLILLGAMSLGRFKVSPDGGVAFNQLVNAYAGAFGQVVLAFLLTVTCLTTAVGLVAAFAQDFHKHFP
KVSYHAWLALSCLASFLTANFGLDQIIAWSTPMLMFLYPLSMVLILLSVTSPLFNRDGVVYFFVVLFTVVPALGDMVVAF
PAVVSQSSFGLSVAALRNNLPLASMGLSWLVPALVGLVLGLLVHWYRHQRVASTSMQSEVH
>SEQF1778_EEI64803.1 hypothetical protein HMPREF0534_1876 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVYDYRQELIDLLNNTADDPQSLLQTQRSLTTILNILNHYQESKPVKQNAPRFVQRKIQSSNELPPQARKTLKSLLTGP
ANDEEKPTSTASPVASPSVEAPKEITEEERLAADNRYLVHRKLSGAEINHRYYPEAILHALPFPIEDGDIAQLDYEQKVR
GLPVIRQITGDHLSDYTPEKVNVIEYGELKRVPGSDVLQLSKTIKGNSIVDEAPENTIVIDPFKYPGRDIKPGMVIDFAY
YDRGNGLTDAKDGAIRWIHEKQDYDTTKQPAKPKVVKKPANSRHDYEKKLDYDLHQRKVLVITGIRSKVKGLKPVIDKHH
GLFRGLDASAEEKVSSSKLKREIRDADFVIVCIDAIHHRISQLANHHAKRYEKPLAIANVTSNTAVERAIARALNGDPAY
AESSEDLKNYK
>SEQF1778_EEI64804.1 DHHA1 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAQRLIKLFSHNDLDGFGAPLLLKTLQPVMFEDTEFDMTNCGAGRIDEELSRWMQTAEVGRFTDVYIMDMTPDSDYSFKL
LNERFANHWLVFDHHESEAELRQKYAANSIVPADPTVNPSATSLVWDWLKQQSSFTKIDEQRQKDLAYLVELIRAYDTWD
WQNDPEMNEQERIDADNLDQLFWFYPLQDSEEFVQNVFNTSWQQYQEENRLLIRTLNERRAKYLKSHLKDILITDIDDHK
FGVVYASDYKSEIAHELLVHHPEVDAALVVSPVSVSLRSNGKLDVAKFAEKYFNGGGHADAAGGRLTVNPIEVGEQAVID
DLKQTITNQQNEQKSNESTLADNLDPEVAAKMAALFGKK
>SEQF1778_EEI64805.1 hypothetical protein HMPREF0534_1878 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVCVDRMLKGINTMFDVIFWILAIWFVVNVVWMWFALDNQVLQKTFAWINVCAIVIGFWVYYGMTHDGNALNGWFLTMNW
VNIAIAAIQFYFGYRENSVTHNGHTTA
>SEQF1778_EEI64806.1 hypothetical protein HMPREF0534_1879 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEFLRKKWEMVGLADDYIFNKVMPNYDVKMQVADLHDIAQRKVEATDPLVVKLKERIAVVKRNRKWRPEYMRRSVYEMD
QEMREKKIREGERRIRDGKREILEGKRELLEGKRELQKSKHEIKEGQDRLKEKEQLIQEREQKLHENQQTIIKTSIEAMR
ALNIDKTTIKKEIKEKFDLSDKEIKDYFAE
>SEQF1778_EEI64807.1 arsenate reductase (thioredoxin) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKIYFLCTGNSCRSQIAEGYAKLLLKNQYECKSAGVEKHGLNPYAVEVMAEDGIDISQQKSKLIDLDYFNAADLIVTLC
GDAKDRCPIIPPQAQSLHWPLPDPAQAKGTHEQKMIVFRQVRDEIKQLVRGLI
>SEQF1778_EEI64808.1 arsenical-resistance protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKSKNLSFMDRYMTLWVFLAMALGILSGFIFPSLPKLINSWSIGTTSIPIAIGLILMLYPPLTKVNYGKMGDVFRDKKE
LSFSLIQNWIVGPLLMFALAIIFLHNYPNYMIGLIMIGLARCIAMVIVWNELAHGNNDYAAGLVALNSIFQIIFYSIYAY
IFISVLPKLFGIKTQTVNITMGEIAKTVFIYLGIPFILGVCSRYLIIKGKGKDWFEDKYVPKISRITTWALLFTIVVMFS
VKGAKVVQLPLDAIRIAIPLLLYFILMFFLTFWIAKRTGTNYPISATQSFTASSNNFELAVAVTVGVFGLNSGEAFAAVI
GPMIEVPVMMLLVDVSLWIKRRFY
>SEQF1778_EEI64809.1 transcriptional regulator, ArsR family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
VAEPNRLKILEMLSCGGMCACDILNYFNFTQPTLSHHMKVLEDNGLVIVDKKANWHYYSLNRAAADFLISNLTEALSVTK
DCICNDKNKKC
>SEQF1778_EEI64810.1 MATE efflux family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDELFEHSSIKRAYFTLALPVVLSMAVTLIYNMVDTFFVAKTGNPNLVAGVSQGAPIFTLMIALGDIFGLGGSSVISRLF
GEHRDKLARFVSGYCFYAPIICGIIVTTIMIIFQTPILHLLGASPATWQYAREYYLVIAWGAVFIIFGLSPTNILRTEGL
AIQSMIASMVGTGINIVLNPIFIFTCGLGAAGSALATVTSTVIGDILMIYYLRTKSKKLTTSIHETKIGWKLQFEIYAIG
IPASVTNIMATFAVALTNRYLIVYGADSVAAMGIAMKANMIINMVIVGFAFGAQPLIGYVYGAKDEQRFNKVVKFDIQVV
ASLAFMLTIILFIFAPQIIRIFMNDPQIVKEGALMLRWLSVSTTLAGIILVFTTMFQSMGKAMPAFWLSFCRQGLIFGVV
ISISAKLFGYTGIIAAQAISDCLTFILALIFFYCYRPRFK
>SEQF1778_EEI64811.1 transcriptional regulator, ArsR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSTQAFIDEAAKIYKVLSNSTRLNILYYLRHYNGETDVKTIVNDLHLAQPIVSKQLGILYRYQLVSRHKEGTHVYYALD
DPHVIEMIDDMLKHVKHEIKGEPHPRNLYK
>SEQF1778_EEI64812.1 hypothetical protein HMPREF0534_1858 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNWWIIFITFLAVNLDFFFILIFLLERYNLRDVIIGYLGALLVLVTISFLLGKTLAIFLPEWILGILGILPIYMALHDND
EDPTHAEKHGPIITTLITYLAVCAGCNLSIFLPILTNLTFQQFTQALLFIAVLSIAIVILIKGIGNITLIKQAMQRYSET
LMKVIYIGVGCYVFWDSGLITHLIHLL
>SEQF1778_EEI64813.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKPILELQGVKTIVNKGTSSETTILKGLNLKINEGDFITIVGTNGAGKSTLFNVIGGNLHADEGKILHNGQDITNTTEE
QRTAFLSRVFQDPKLGTAARMTVAENMLLATKRGERRHLIPRKLKSNMDRFTKLAATMNNGLENRMNTATGALSGGQRQA
LSFLMATIKRPDIILLDEHTAALDPHTSLNLLHATNERITKDHLTALMITHNLEDALEYGNRLIVLKDGEIKADFNAEQR
KSLTPEKLYTYFEG
>SEQF1778_EEI64814.1 branched-chain amino acid ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLIVSSIGQGLLWALLGLGLYLTFRILDFADMTVEGTFPLGAASAVAAITHGINPFLATLIAIGAGMLAGLITGLLYTK
GKIPSLLAGILTMTAAYSVNLRIMGKSNVSLLGQKTLFSGEFMRSLPQYFDSVFLGIVTIAIITVILVFFLSTDYGQAFI
ATGDNPVMAKSFGIHTDTMVIIGLMVSNGIVGLCGALIAQNNGYADINMGIGTIVIALASIIIGEVAFGELTLNQRLVAV
TLGSIIYRIILLAVLQLGFSANDLNLISSVVLAICMMLPQLEERIHLKKPILKGVRPHE
>SEQF1778_EEI64815.1 ABC transporter substrate binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRMYSLIAIIIAFLCFAFFRENNGFVTKQRIPKVGVLTLMHHPALDEIYKGYVDELAKEGYHNGKNIKIEYQNANGDQS
NLKTMASKLVDDNSTVLFGITTPAAQALANSTTKTPIVLGAVTDPKTAGLVKNNQHPGGNITGVSDQAPIREQLNLIKQF
MPRMKILGVIYTSSDASAVAGYHQIKRECRKMNINLKAYSIANSNDLNQVSEQMLSQVDAVIVPTDNTIAGAMQTLVKNA
DAANKPVFPATDTMVKQGGVATYSVNQRALGVQGAKMTVAILKGKSKPADTPIEYMKHGTPVLNIKQARKLNLQIPAQFE
KDAETKGEVYK
>SEQF1778_EEI64816.1 NlpC/P60 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKVLAAALGAAGALAVANTASADTQVQVQSGDTVWGFAQQYATTVDSISTANQLADPNVIYVGQQLVIPSSAISAASAA
ATVAAPTATDNATASQAAVETTETTAASTTPAVSATNASNVADQAQPTTVVSAASDNNTTAQVSAVSQVPAQVSAASATI
SVAQISAVNTNNNVTTLTTTTNTAAPTQTTYAATEAVATPQSNTTVQSTAAVTATPATSTAAGQGNGSTANAVAVAQAQI
GTPYVWGGNQPGGFDCSGLVQYAYGLGSNYRTTYQQTNLGAHHSDIQNAQSGDLYFWGPDSAPYHVAIATGNGGYIQAPT
PGQNVQTGNINYYTPSFYISMN
>SEQF1778_EEI64817.1 hypothetical protein HMPREF0534_1863 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKSNDKLQKEIKELRSDFCIYSFLIILTITGFCLRNMIPWSWLNAIVNFFVYRLRV
>SEQF1778_EEI64818.1 hypothetical protein HMPREF0534_1864 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKETISTKIIKWFYGIHGPLDEYRRNELNRIGNNIAIFLLSINLLLSFIASLLMLSTNNSELTLDILLLTVFASLGYILY
KTKRHHLTEIDVEAKQESKTKQKFIKRAIGLGIYFVIVMYRLTILIDWLPNKGALIPLLTEPSTISSVIVSGLIYGLLMG
TWEIYQIKSDPNDKKVTQNHLHQKYWLVLFIIIVITSLLLIHK
>SEQF1778_EEI64819.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNRVKQFRKDQGLSQLKLAQKIGVARQTINLIENNKYNPSLELCINLAKALNTDLNSLFWEEHTDERNN
>SEQF1778_EEI64820.1 hypothetical protein HMPREF0534_1866 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQHVLPIKDSNILHEVQDTLLNNFRYGRRNYTIFQVGKATLLRVSDILALRRNEIFADDGTIKKNAYIRDKKTKKPNIL
YLKPVKQDLLDYYAWLQENDIQSEWLFPSTTHQDRYLSDLRNPLSQ
>SEQF1778_EEI64821.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYRNNDNEFYDRSKLTMEFAKQLKKLRTDKGLSQEDIAQKIHVTRQAVSRWEAGSSVPDLETAVQLAAFFDVSLDWLVLN
KQLADNITNQDILNAVNELRDDIDDLSDDIDDLDDGGVGFSDNRKSFGSFLEDNWFLIIVMCVLVYMGFHGGISSWNGKF
F
>SEQF1778_EEI64822.1 transposase, IS116/IS110/IS902 family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEAAHLQVKRRFILMDLLKTVFGIDVSSRKSNVCIMVNGQKVDDYAISNDMVGFNQLLDDLKQVTKPQIIFEATGVYSRR
LQAFLDMHKLRYVMMNPLEAKRKTKDDLHQNKTDKLDALYLAKLQSEHPQRLAYVQSKEYQELMANNRIYEQASHDLITN
RNRLHKAIQLTFPEIEHLMVNPRGKNYWSIVLRFPHPDIVLETKEADIIDFLKGLSGIGKKRANDIMQSLIRLAKVACPA
VKKDSAHIRGLEMAINNILSAEEACQTALKEMTKLAPKRDLEILTSIPGIGENTALRIISELGDIRRFNNPSQLNAFVGV
DPQVYESGNLTAHLSISKRGTAIGRKVLYLAINQIQSAKKAGNPSHIADYYEKRKRSSETASHKKAAIASIHKLLRTIFA
LIKNDQLYSY
>SEQF1778_EEI64823.1 Na+/H+ antiporter NhaC, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSIRFKEAATLLLIMLIILGTAVIRFGLSPQIPVLFVIALLIFWVKLRGASWDEIHKGIQEGIGTAIIPIFIFILIGAL
IAVWIQAGVIPTIMIVGFKLISSQFFVPSTFIVCSLVGLSIGSGFTTISTIGIALFGMGVALNANPALVAGAIISGAVFG
DKMSPLSDSTNLASAIAGSDLFAHIKNMMWSTIPSFIVSLILFWFFGNSSSHISTGKIAHTMAILNQQFMISWWALLPIA
LMFICAWRHIPAIPTLFINIIVTVVMISFQNPGISLQSLAKLISDGFVAHTSDATVNTLLTRGGISNMMGTVSLIIVTLS
LGGILMKFNIVQSAMKPLVDHLHKPGSLITVTILSGIGINLFVGEQYLSVILPGKAFKGAFDKMGLSPLALSRVLEDGGS
VINYLIPWGVAGSFVASTLGVPVLHFLPFAFFSLFSPVFSILSGVTGIGLKWQKGKQRNTTN
>SEQF1778_EEI64824.1 xanthine permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEPVSSIQAPSRHTKIDFTRQWQNFVLGFQHLLAMYSGDVLVPLLIGHYLHFSTLQMTYLVSIDIFMCGVATLLQLKRT
PLTGIGLPVVLGCAVQAVTPLETIGGKLGITYMYGAIIAAGIFVFLIAGFFARLKKFFPPVVTGSLITIIGFTLVPVGFQ
DLGGGTPTAASFGDPANLLIGFLTIAIILLFNAFARGFMKSIAILLGILISSFIAGALGFVSLKPVSEAAWFHAPQLFFF
GVPRFDMSAMITMILVSLTTMIESTGVFFALSDITGRQLTTNDLERGYRAEGIAAILGGLFNTFPYSTFSENVGVLKMSG
VKSRQPVYYAAFLLLLLGLLPKVGALATVIPEPVLGGAMIVMFGMVGVQGVQILHKVDFSNNANLLTASVSIGLGLGITM
YPQLFQHMPTEFQIILGNGIVVTSLSAVLLNLLFNHRWANHN
>SEQF1778_EEI64825.1 peptidase, C69 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQKLMSSCTAMLVGKNATIDGSTIIARDEDAEDGVNPKIFKVFPAKDYTGEHYVSKYNGLTVEMKGQGCRYTATPNGMPD
EGRWDEQGINEYNVAMSATETEMTNARVLGHDPLVENGINEDSMVYLVLPFIKSAREGVQRLGSLIEKYGTGESNGIAFS
DKDEVWYFETGGGHQWVAQRIPDDAYAIAPNIMCIEEVDFNDHDSFMYAPQIKDFVEKYHLNPNSRTFNFRNIFGTQDEA
DAYYNTPRSWYGQKLFTPSLKQEPTSQKIPFIQHAEKKIAVEDVEYFLSSHYNGTPYDPMGTYASGTPEEQRKFRSIALD
RNQSSCILQIRNDVPAQYAAIQWINFGFYCYSPYVPFFTNISDTPAKYKYATDDAQPDKSAYWLNKLLEVIVEPHYHEFI
NEVNDFRDRCQSYGVGRVDTITKTAQIQNSANLINYLTEQNMKTANHVLNETHKLINQLLHEALLNSKFQFERGDNL
>SEQF1778_EEI64826.1 magnesium transporter, CorA family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTTEQINDHSKWISIFEPLPHERLDLIEKYEVTQELLDYAIDPYEKARVEIDPDAGVTLLIFDVYVPTHAVTAPQTAPI
GIMLTANNIITFTNAKTNFVNGIIANQLQLLKKHGENDDKLNLVFPVLYRLSTDYFGPLRRADQQRQEIQRNLQRRTGRQ
AITQFMEIETGLVYILTSLKGNVSLLEEFKRRFGNHITTKQYNDLDDVIVEAQQGLEMAQMTSDVSARVSNAYSKVLDSD
LNQTMKYLTIYSIVLSIPTIVSGFYGENVKLPLANGTYSWVFTIFITIVLMLACVIFLINRHWWK
>SEQF1778_EEI64827.1 pseudouridine synthase, RluA family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYRWQISEKLADDQVTKPLRKLLHDQWLLPNRLIHYLRIRRTVLVNGEYRSMNELVGRNDNIQLLFCGDEIRTPAANDY
IPSLQSHLEVLYENRDLLVVNKPRGQKTHPNYHGETGTLMNDVAGYLAHSQNNAYMVHRIDLQTSGAVIVAKNPIVVPIL
NRLISDGQIHRQYLALVEGKMAQSGKFDWAIGRNPVNPHLHQVNGQNAQPALTYYETLASNHERSLVRLHLVTGRTHQLR
VHLAHSGHPIVGDPLYNPLSTEGMLLHGVAQKLILPFVMKSLNISAPLPSYFENYLVKYNLAKKQI
>SEQF1778_EEI64828.1 integral membrane protein, YkoY family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLLEKLYGPFFDPHNWATVVTSGQDWLIIFSLVMIECLLSVDNAVVLAAQTRVLPTLKEQEESLFYGIWGSYIFRFLII
GIGVYLINFWEIKVIGAAYLIYLVYRYFHNKFFGKRAMRKTREGKTHLTGRKLFWTVVLQIEFMDIIFSIDSVLASLAVS
NNPVIVLIGGLIGIACMRGIAEVIMKLMRKVPELEPMAYILIFVIAIKLFLTIPAIDIEIPSGIFGSFILLVFAVTIIIH
FIRRSQKKKVE
>SEQF1778_EEI64829.1 thioredoxin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIDATAETFDKDVQGSMTIVDFWAPWCGPCKMMEPAMQNLEKQYGDKIKFVRMNVDGNQEIAQRYKVMSVPSLVLFKDG
QAREKVTGYYPEAKLAHYFERKITE
>SEQF1778_EEI64830.1 hypothetical protein HMPREF0534_1845, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
GGQLQDLTEKGWDKTMAVDVKSIYLMTKAFISGMIKRRAGSIINIASVAGLLGDYSMPAYNAAKGAVVNLVRSMALDYGP
YGIRVNNINPGATNTPMFKGNPETVKQSYRDASPLKRIAEPEEIVNVAYFLVSEEASAITGQNIGASMGYGIWSGQPKQ
>SEQF1778_EEI64831.1 C4-dicarboxylate anaerobic carrier [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGEATAEKRHRFKLKMPGAFTILFFLTVIAVMLTWIVPAGSYSKLAYVNDHLQVTQPTGEKISYPATQATLDKLHIQIDV
DQFKSGAINKPISVPGTYKRLEQHPASVSDIFSSMVDGTIESVDIMIFILVLGGLIGVVKASGAFESGLAALSTKTKGKE
FILVFLVTVLLALGGTLCGIEEEAVAFYPILAPFFIAMGYDSIVCVGVIFLASSLGTTFSVINPFSVVIASNAAGTTFTQ
GMAGRIFGLVIAVTCLLFYLHWYARKVQQNPQFSYSYDDRDKFDQMWGMTTSEEKDQRFTLKKKLF
>SEQF1778_EEI64832.1 C4-dicarboxylate anaerobic carrier [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIWGVMAKGWAFPNMASAFLTIAIIIIIMFLTCFGRQDGLGEYKTTTAFSDGAASLVGVSLIIGLARGINKVLNDGYISD
TILYASSKMVAHMNGSFFIIVMMLVFFVLGFIVPSSSGLAVLAMPILAPLADTVHIPRYTVVTAYQFGQYAMLFLAPTGL
VMATLQMLDMRYSHWLRFVWPVVVFVLIFGGGLLVTEVLIAG
>SEQF1778_EEI64833.1 alcohol dehydrogenase, iron-dependent [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVEEFGSPSSYIQGKGVLFESDKYLKNFGTKPLLLAGETVYKIVGKRFEQYLQESGYDVTRVQFNGESSTNEVNRVTEIG
KENNVTVVYGLGGGKTVDTAKAIADNLHLPVVIMPTLASNDAPCSRLSVIYTDDGGFDHYRFYNQNPDLVLVDTQVIANG
PVRMLISGIADALATNVEAQAVAKANSDTMLGEKQTLVGNAIAQKCEETLFNYSHLAVADAEAHVVTPAFSNIVEANTLM
SGLGFESGGLSGAHAIHDGLTILEETHDLTHGEKVAYGTLTQLMLEGADQERYNKYFQFILSLGLPTTLADLHLENVTDE
ELLNAGKAACSEQDTMDRLPFKVTPDDVAQALRAVDAYTKQYLNSHHCHHSQM
>SEQF1778_EEI64834.1 arylsulfatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKLSKFVDTRIGFFTLLVILFWLKTLFAYFTDFKLGVTGIFQYLILIFNPLATTFFIYSLAFYFKRSRFFYPVIMGLDI
ANTLLLYLNVIYYREFTDFMTIATMTGYSKVNQGLSGSSLALTNFHDVFYWLDIVVILILMLCKVIKFDPRAIGTRLAFA
FSSVGLVLFGINLSFAEMSRPQLLCRTFDRSYIVKYLGIDTFTGYDLVKSQHINNMRQSATKPELLKVKKFTDKHYAPAN
PQMYGIAKGRNVIIIHLESFQQFLINKKINGQEVTPFLNSLYNGKDAYSFDNFFHQVGQGKTSDAENLLETSTFGLPQGS
LFATLGSDNTFQGAPAILNQRAGYTSAVFHGNVASFWNRNNVYKNLGYQYFFDASYYDTSGDKATGYGLKDKLLFKNSIK
YLQSLQQPFYAKYITVTNHFPYTLDDEDKDPNFQTTNTGDSNVDNYFVTAHYLDQSIQEFFNYLQKTGLDKKSIIMIYGD
HYGISNSENTSLASVLGKSADDWTDFDNAQLQRVPLMFVIPGTGHGKVYHTYGGEVDVLPTLLHLLGISSKRYIQFGTDL
FSSKHNQVVAFRNRDFVTPTYTSVGGTIYNNKTGKEAKLTKKQQEKLKKDQDFVNEELTLSDSLNEKNLLRFYHPKGFKN
VNPADYNYSNGLKRAQRIEKKKGIKSTSIYSENDDRSTVDDYSTDAPEQNHSSTDSNRIKITNPDANNK
>SEQF1778_EEI64835.1 hypothetical protein HMPREF0534_1841 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLRDTSQANIVAAKIIKVTPKNVTVITEEGHLLKIPLTKQYREDKTLRASLVDILKAGIWIPVNKKLKKLFSYDWLFVP
ALVPAKN
>SEQF1778_EEI64836.1 phosphoglycerate mutase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKLNIYLVRHGQTFFNIYNKLQGWSNSPLTMKGKEDANVAGEKLQNIHFDGAFCSDLSRAMETAQVILNLNNANSVAHP
VTAPYFREEFYGSYEGTNMDLAWYNAGAPHGFKNFREIVTAYSIGQAKDWLKDADPFHDAENNEEYWQRMNKGIELIQNA
DLPDNANVLWVSHGNTVLSLVERFGHGKYDVTERPANGSLTRATLTDNDMEIVEYNK
>SEQF1778_EEI64837.1 transcriptional regulator, IclR family, C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNDNFSTTLVKAQQIKDYIKKQENGCTLTEIAKNVKLNKTTTYRLLQTLVTLKDLIKVNRRYYLNQHFNANYLPVGWLAS
RIVQPLVNKYELSAFLGMPFNQQLVITQVFAFEKRLNDFHQLGKAQAFNTSAMGKCALAFMNQTVQTDVLTRTKLQTQTK
NSLTDQNSLAYSLQIIKDQGYALDDEEVELENRCLAVPVFDKNEQLVGTLGVLGTKTTLQRRKINKLVHDLQIASSQLTG
QIFNN
>SEQF1778_EEI64838.1 hypothetical protein HMPREF0534_1844 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGVHNLNKAKNVYQELVQKYSLEKVTLKQVNVEDSESVEEFSN
>SEQF1778_EEI64839.1 toxin-antitoxin system, toxin component, MazF family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGHNPKKGNIRRHYVVMSTSAYNEATHMFIGMPITTANYSNNPRYMPIL
>SEQF1778_EEI64840.1 hypothetical protein HMPREF0534_1822 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTVKLRQTGNSRTLTVPSGIKATGEEYTVKNVGKTIVFTPVAKRKNIFATKDWKEYDYQKDIENDPALQPVKQVGREVID
>SEQF1778_EEI64841.1 putative type IV pilus biogenesis protein PilP [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRRKLKKSLATTATVMAVTTGVTAISNSAKADTVQNSKNTIQQTLPDANQQAQRNVCAAQDAVNKANADVATANNDLNI
ANQNLADADSQAKVQEKISNSSNQAVNNAQQEFDNVQSDLTKYQQEYQRILKVPVFYLNTMMNSDKPLVFDLANYDGYKG
QNAQAEKNFKLKAYQDNIDLLKEVIRRNQSFVDNDYKNTPAYYNLGTINYEINAVNKELAELNQIIAEKKKGTFNQYQHY
HDWITKDRSRSWLDLESADISDIQEIIDWHHKIIEEDQRKTAEILPIAKKELETGNYYLSVSKNLLPQLEEVTNNLIETQ
EKLTYAKSNLDSTRRKAWQDSVLLSQIKGDRANAQSQAINAQTKLLQALLNKTNSQEKLASAKEKLPAQTDALKYSSLIN
LEPLIVEPGVTPAPKVTTAIAVENDDHQNKAVITLPGDEQENKLPQGTKVVWKDDAKVAADLQHLGKHTEDVLIVFPDGS
VILTSEQVTVSATEKQADANKETSPAQKTIDSTQENNMRANDLSAQVVEVNDDNQTSAPEILVTSQTKQHTVRPNGVIKG
QAALNNIVQPSLAKSFKNKTTNNILPRTGDESSLPIIALGAIIGLVGIGAALRRYE
>SEQF1778_EEI64842.1 SNF2 family N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNWRNLFAQRIYERGKDYYYRGRVKSLIFDADDNFSAIVKGNRAYKVTGRYHNGKFSQLHCDCPYAQDNHRCKHMAAVL
EAIDDGSANIEPQKSLGEVFQSAFPPNRLPVDPQSFLSKEVFPLRLIEHVFTNLDDVQIISEILIKAADAYFTIPGAKWN
YSVAGRFKQYYFSVLVAFNRKTIVDVQVNFVKTREGQQIAKMVALYCLLKYLDQHNIEENTNEAARQMLANFLDRAPDSQ
TIITANIGEYYDGGQYLYFRAGVPDHMYKFPNLTTLTNGIARGERLRLGKFFDQQIIPENLDKDSKQWLDLIIKLSSTAD
LTRDGYYEASVKNELPLAGVIMDEVDQILKTGNTLYNRWKVPIKREERALKATVSIKAYGADDDPSRYLDVSVDLPADLI
HGQAAYYHLDDHIWTAFTGIAPNKLDPVFPVTSDLVFGVDTMAEFYRYVLPKLQSMFSVELPQDRDLSKFLPSLPTVVFL
LDYHDEQIFCDLATETDGKTQKIKKIDDLPQFLMQRVERVLAKYFTKFNQTETRAVLLVDEATNLLATGVNELQEIGIAK
ATPAFNGLYKQPFTKVSVGISVDSGLLKLDFGDDQLTAKEIKQILRDFRPHKQYYQLGKKTLKMDEPSLAELVETLRKMG
ISSRDFTAEELKLPVYRALYLDDLLSHQEALNYRTTSELHQLVTDVKTPQKDFKVPANLHATLRPYQYDGVQWLMALMKY
HFGGLLADEMGLGKTLQIITVLLSEQGNGQNLIVAPAAVIYNWQDEIKKFAPDLKVTVLDGSKAERRKQFAQSTERDIII
TSYDAAKRDIDFYEGHLFNIEVIDEAQYIKNPQTAAAKTVKAINAKQRFALTGTPIENRLSELWSIFDYLMPGFLGSYQQ
FRKQYEGPIIKNQDNQAQDDLKRLVQPFMLRRLKKDVLNDLPMKNEQVFLTPMVGKQESLYQARAQRLIRQIQKQNDEEF
QQNKLAVLAEITRLRELCCSPQLLDSGYSGPSGKIKATMNLIKDEVADNHKILLFSQFTSALAILKEKLAKAGIKYFVIE
GKTKKADRLQFVDEFNSYDQPAVFLISLKAGGTGLNLTSADVVIHFDPWWNIAAENQATDRAHRIGQKNNVTIYKMIAQN
TIEEKIIEMQQKKAALANSILSGNELANAVINKETLLNILK
>SEQF1778_EEI64843.1 PHP domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKGMRRMVMVDLHCHLLPGIDDGSKSMEISLRLAKEATENGVTHALLTPHHMNGHYVNHKQDVLARTKEFQEELEKNNI
SLTVFPGQEVRINGQLIEALDNDDILFADESGKYMMLEFPDNDVPHYTNQMIFNLQQRGITPVVVHPERNTKIMAEPDLL
YQMLEKGCLSQITASSYVGTFGKKVEKFSKNLIAAGQGYIFASDAHDLPGRKYEMRQAFDKLSREFGADVAQEYQDNARA
IINGDEIGRHQIKKVQQRKKLFGLF
>SEQF1778_EEI64844.1 exonuclease SbcCD, D subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRFLHTADWHIGKTLNDFSLLDDQLATFKQIEAIAKDQQVDAIVIAGDLYDRSVPNEAAVKLLNQMLQDLNLTDHFPLLA
ISGNHDSAVRLSTGTDWFAYQSFFLNTDINNAFTPVTIKNTQFFLLPFFGIQEVRNYFNDDKIKNVNDAMGRITTEMEKH
FAPDKRHVLVAHFFAAGSKRTADSETLIEVGGLSAVTTDVLAPFDYVALGHLHNRNALNDEKIKYSGSPMKFSVSEAKQE
KGVWIVDTAPFKAEWVPLSPAHDIHLLKGSFTELATKPEEALREDFYDIELTDQERIPDVLNKLREYYPKIISLHRTHQA
KQVQLNLSKKRAQESPLDLLADFYSQTMGNDLTDRQKKWAEKALTQIMKGEE
>SEQF1778_EEI64845.1 putative DNA sulfur modification protein DndD [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHPLTIELHYFGPYEHQVIDFTQFTEHSLFLVAGNTGAGKTTIFDAMCYALFGQTTNDRDRSAAALRSDFAPADQETMVK
FTFEHQNLKYQIMRRPKQVLKGRRGNLVEHNQAVDLIYPLESDHPHEITKIKEVDTFITDLLNLTRDQFKQIVLLPQGKF
RQFLDSDSNTKEVLLRDLFNTSRYEQWATQLKNDLREQKKSLTAQETKLQSLKETVTAIDAQLTTKEWLAEAKNYLSRLK
ANLEHLGDDEQQQQKKVDQLDAQLHTEQELKKNIEELAELIKAGKTLQAQAGEIQETKQQVKVLDWYQEHQTKYQRWKDG
EKRLQKLTADSNILHEDLRNLQKQQQTIETELQQTSKRQEKIDHLQTEVADLTNKLPLFDDRDKLRSTVDELQANLKQQK
KQQAAFQKKLQDAQQQLTVITNNLKEHENLGEVQVHIAKQEALQEKLTTAGKDLKQLETKLLSEKKNCAKLEQKQGDAEK
LVQKSQGELNDLNDRFARHQIAILAQKLKPATPCPICGSLDHPHPASLADDGELVTEAQVKAATVKAQQNRSRLDQLKEQ
VRQSVAQITNLTTEVETKQANLAELLGDNELPSDWEGQIENHAQKLAQMKNDLAKIEQQVKQWRQEEEELQQESKFSQEE
LDKIDESVNRCKQDLIAKQTILKEKAASLPAKFPTKEAADKQIQTDQLTIKAFNNQLESLQQQRQENAEKLAGTNSRIAQ
TKEELATQTTQQDNLHQYLMNLLAQYDVQLKWDFWQEASEQVATLSSLREQVTTFENQVQDNQSQQERLTKAINNHPMPD
IASTQTKLNAEREQLRQCQQEIGQLTAQYKQLEGTDQKIIKAVVKTGKLDQEINELQTLTDVVTGNTENHVSLERYVLQA
YFQDVLVAANVQLDRLTNGRYQFELATESHGAGAKWSGLEVNVYDDNAGRTRSARTLSGGESFMASLALALALCQIVQEQ
SGGIKIDALFIDEGFGSLDQQALEDALHSLQELEGHRMIGIISHITELEEQIPDQLIVRSRNGRSYVAYQHEI
>SEQF1778_EEI64846.1 hypothetical protein HMPREF0534_1828 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRTDQAGMIVGNARSKIYHTPDQQGYHMNSANAVYFNSEAEAQAARYRKSLR
>SEQF1778_EEI64847.1 hypothetical protein HMPREF0534_1829 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSGKLLASTECWLIGIINKHIQAKKLVKIVASFLTVHFPHIH
>SEQF1778_EEI64848.1 LPXTG-motif cell wall anchor domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNNSSKYCLLLGTALLGLYFQANSVHADATGITANGETTHSNVTPMVQTNKDEASTPQTTTDWSDPAKYQSDIPVQILG
INDLHGGLETTGSATIGDKTYSNAGTVARLAGNLDAAEESFKNANPTGSSIRVEAGDMVGASPANSALLQDESTMHALDA
MHFEIGTLGNHEFDEGLAEYMRIVNGGEPTKQYNEAEMAYPHVKTGINIITANVVNKSDGQIPFGMQPYLIKEIHTSDGK
VARIGFIGIETTSLPILTLYDNYKDYDVLDEAETIAKYDQILRKKGVNAIVVLAHTGVSTDKDGSTKGNAVDIIKKLYQI
DPDNSVDLYIAGHSHQYANATVGSVKLVQAIYTGKAYDDIIGYIDPTTNDFAPNSLVSHVFPVLSEKDAPNIKTDANVTA
IVEDANNRVAPIINKKIGEAATTGDILGRLHNTPTRENAVGELVVDGQLYAAHKVGLPADFAMTNTGGVRADLHVNPDRS
ITWGSAQAVQPFGNILRVVEMTGAQIVEALNQQYDEDQAYYLQISGLHYTYTDQNDPNQPYKVVQVYDQHNQPLDMNKTY
NVVINDFLAGGGDGFSAFKGTKVVGIVGQDTDAFIDYITDMTNDGKPITAPTMNRKIYLTAEQVAKADSDSQLQTGTNQN
TQNDANSQTEGNQLQEVPSQPVSPTVTLPTTAGQPAETVTLHAQSKQQTVAANNQLINLTPTSINGQKQKAADQQAALPQ
TSNDEDLALLLLGSSLMAATGLTIIDRKRKHA
>SEQF1778_EEI64849.1 hypothetical protein HMPREF0534_1831 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAENIINILKTNNMTVAFVAQESGLDVAQVNETLKRPVATWSIQILNALADALGERPGELLDRIQDFDFHLHTDDDQLTI
QHVQFQTPSSYQQVRFAVESNVLEGWEPTATEVRQLKENAENPDDEILMEIEQLFGDEDD
>SEQF1778_EEI64850.1 Fic family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTDEELQAKFLYDNGTLRNKFAIKNADELSLIEYRGVAEREVALLQQQPKIKSFEDLQTINKFLFGWLYDWAGELRNYYI
SKAGFDFLEYDRFDNAIKYINDEIVRLNKKKQPTIEDYAALLNDLNYIHPFREGNGRSTKLFIQLIALHHGQVIDYPADN
AEMIAGLNQSDVGIIAKTMALQKSAG
>SEQF1778_EEI64851.1 putative glucosamine-6-phosphate deaminase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRMKILVTKNKEVASQNAFEFLQTDIINGAQVLGLATGSSPLGLYQKMTNSSVDYSNLISINLDEYVGLKSTDPQSYHYF
MKYHLFAQKPFAKNFIPDGSNLNATEVINHYNQILATYPIDTQILGIGNNGHIGFNEPGTPFDSQTHKVKLTPATINANA
RFFTSSKDVPTEAYTMGIGSILQAKHIILLAFGEQKADAINKMVNGKITTAVPASVLQKHPNVTVILDKQAASKLA
>SEQF1778_EEI64852.1 phosphoglycerate mutase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFKKLTVMCAVLSGLLLGNSAMTAVPATTYAASNDKQVTIYLTRHGETTGNVMQRVQGSSDFPLTKNGITVANDLGYGL
KGIKFKHAYTGNLTRQEVTAQQALKYSANPNTKITTTPMLREGGYGSFEGDSIEADNQKIANVYGYQDGKQFQQATGKDY
WNKLQDAYHKLDMDNSQNTKLAKSDRAESSAQVQKRMNSELLHIAKTTQKQGGGNVLVVSSGMSINEYLSTISKKYDGKP
MQNAAVTKLVYKNGKLHVDGPIGTLHYVNKGKKIAANK
>SEQF1778_EEI64853.1 hypothetical protein HMPREF0534_1835 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSLTIKMFNEIAEKQLPGLALFENRIGSGKTTGALQWVTDMLMKSKESDVIIYITPNRQNRDEAWRGLVRQAYRRILCD
ESVKLNR
>SEQF1778_EEI64854.1 hypothetical protein HMPREF0534_1836 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKHGGDWLDKHIEEFFATNQLNLIDNRIARDERIEDIKIALVQLLPTVKINIRPTVEDKFGYNLVVINNKRYFQTHEDVK
DNYARDYQQAIVQHLTIGSTLINSLKELIIKKDLKERSLSLYH
>SEQF1778_EEI64855.1 hypothetical protein HMPREF0534_1837 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGWEFYQVAKEAYGTQAVYLFKMINSDEFEVRRLDLQESSKFINSDDTDLQYLIKTPANTFYNLNRENIFTLPNAELFGD
INEMISHQNCSSVTKAELKRALNDLSKSYPNYRTKYQNLISIINKRELNSFNINDLKDEFNFIKKNKILSPIAINLLLDE
LYEQYGLVLKVKPKIKSHVQNHLSGLTDINYFVDNGDQDVIYYNVGTISKNMNISIAKASHIWQLQPNIKLNERGFATIE
TENILKFLQLMMVNFVRFHQLTVIPFPFKYLREFIQLEEKIS
>SEQF1778_EEI64856.1 hypothetical protein HMPREF0534_1838 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVKSTKKKRSHIGLIIFTILLVILLGILGVNYKRFASKQLNPVRDNKVVKKDSPKITKTAKIVGSYRDDQDGAAIALNEN
GTGQYVYADKNNPDTDDSLTWRKEGEHYLINLEDRDVTNPLTATLDNNKLVVTGSNGWNTETFQKVNEELNLQQFLNDMH
KK
>SEQF1778_EEI64857.1 hypothetical protein HMPREF0534_1807, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KRELMIGCEYMDTTKARIQRNAVVVTVPKSLGVVPGTEYQFSKESDGSLKLTPTKKVPETMAELFKGWHGKYETPTDFQD
WDSHDPAGEEL
>SEQF1778_EEI64858.1 hypothetical protein HMPREF0534_1808 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFWKARLTTNYEVFIMSVDNKDLTDEQIQDAYIFMDGTFNKSTEFDHGLFSEWLILKTILDDEYEEEIEVAKVNLYLFNG
EQVDFYEAADSIDGHQEFIASKLLNVFQIDPLSRIAIIDNLYVNSENATAKTKIKLLNEQILPYLYDRGFEYAAFLNASI
CYEGSRLEQETTDNAFENEIPMIREIGESERWGEGVNLVDLEEYKS
>SEQF1778_EEI64859.1 hypothetical protein HMPREF0534_1809 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFDSSLKLLGHSEGKGKPVLVDWLKTIKAGYIRVADNANEHLVQAVHSIREGNGKEYRFADFNQPFYLQKIGLRNSDHF
YLVIVIVDRPNFEKDKLTIESVIDKISATVGLHNFPYQSQGNNLEGLLRDILVRPNISVSEIKNRLQFDPHQLKRPLSVL
CIKAPTTNIQPLGTILTRFISFHYDDYNVYMVENSSPVITKTIMQELAPYLIRNKTSAGLSNSFTHLHQFNQFYQ
>SEQF1778_EEI64860.1 hypothetical protein HMPREF0534_1810 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTISKFIEIGNEATENNVSYQEITDEQNYAIFDAMGVPRTTDGKFKKDSEAPFSSDGMVTFGQAIRKGKMSLKTNDFEK
LTGDQPLTVKYMFEHSDDFQIGARHSQDK
>SEQF1778_EEI64861.1 hypothetical protein HMPREF0534_1811 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKKYYGKAFLFCNKEKSKSKLFSSKIDNIERLIKVQEMTMKLDKILNIILISLGITVVGLVKFVGISANQDHATKHNNY
AESSKVSNKSRSSKDTTKSDEVTGNKLTTSSNTSYQFSEQKDKSNAGKVIKLNSVEEAEATIKQHEATCPYGHEPFYPGL
VYTGTYTCKCGLKIIWWDKAMKESVDRDMAKYSHDPEDYSYGTSDPWDESGTSEPQDGTAVSSVD
>SEQF1778_EEI64862.1 hypothetical protein HMPREF0534_1812 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIQLVELVTVDNENLAYHYASDDIDAVFNYEKKFNDLTKDIPLSFSSHILATEDSTFDSLCEKDPYFKQFRNYSDLTSFV
KKTQEKSQLTERTLLTDDDIKNYHYLEHNYE
>SEQF1778_EEI64863.1 prophage maintenance system killer protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEEWFYGIKDEAGLKGMLGQVDNGFFGYTPYPTILHKATYFWYTISTKQMFNNGNKRTALLTSLLYLKINGFSFDILDE
VKLYNISIQVANKQFSYNQLYQYILRHSYIDFEFSKRILSDKKA
>SEQF1778_EEI64864.1 hypothetical protein HMPREF0534_1814 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNSLKGQFVKVPAVKINELVNNVVNVDPKKAMNELLEDPKLVKTLKKLSLV
>SEQF1778_EEI64865.1 LPXTG-motif cell wall anchor domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVTKIKPSHLSISRYNDDLKAEQAKLATAQKTLDDANTALAKANDKLNTKKQIVGNAQTMLKADNDKLGQLQTTLSDLQN
APEKLATAKQAVADAQAKLTTAQNELTTATNELNELKQAAITAQANVDEANQKLAIATKNQQKAQQALTQAKDKLAALQQ
KEALAKQVAEQQAKLAAQNKAKGNGYHVANNQVVDSQGNAVQDWAVKNGQMLDPNGAVIEQATPKTVNVAVNGTKGETAS
NAVVLKTGSRSAVQTQVANENAQLPQTGNADSVLALAFGSLLAMFGIGALRKREY
>SEQF1778_EEI64866.1 hypothetical protein HMPREF0534_1816 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALKLNGQSTQSITLIDHFLWHEIIILFFGEGVKMKKYWK
>SEQF1778_EEI64867.1 hypothetical protein HMPREF0534_1817 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLILVTIVVIVAGMIFYRRDSNCKPFKASLNHSKVMMTPDWYAKVTLTANKGTTYEVKNSKNKVIQGKSETKNGKAEIRL
NDTGNYTVIAKSDNGHVSKKLPVKVNHYKAAPNKWTSSVGPLRFKITSVEYQKMKKSEANKPDNSGIDEAYKELNHHYYQ
VKVNYIVKNSSKKAVNPQYTIWMPEDDNGQEFSTETPSPDGGAVDTIVGTEAINPGNSRSGSVTMLSNHKFTVKHLKFSI
EEVLGNEGNHIAKGGVAELK
>SEQF1778_EEI64868.1 homocysteine S-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKITAELTKPLLIDGAMSTALEQLGADTNNSLWTASVLANQPALVKKVHQEYFKAGARLAITDTYQANVPAFIKNGYSK
QEAHSLIQRAVALAKEARDEYQQETGIYNYVAGALGPYGAYLANGSEYSGDYHLSTTEYQQFHRPRLTDILTVGVDVIAI
ETQPRLDEVLAELDLVKELAPETLCYVSFSLKDSTHLPDGTPLAVAARTVAKYPNVFAVGVNCIPLEEVTAAIETIHQAT
DKPVIAYPNSSATYDPTTKTWSYPHGRRGLVDYLPQWLAAGLTIIGGCCTTTPQDIAALHEYLEGGAHHD
>SEQF1778_EEI64869.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKKTHLAREMSARHIQMIALGGVIGTGLFLSSGYTIHQAGPLGTVIAYLLGALIVYAVMLRLGELSVAMPYTGAFHVYA
KNLIGPATGFTVAILYWLTWTIAMGSEFTAAGLIMKRWFPQIPVWWWSLLFIIIILLSNIFTVKAFAESEFWFAVIKVVA
ICAFILLGALAVIGLIPIQGYHHAPLLNNFTKDGLFPGDFSGLFMTMLTVNFAFSGTELIAITAGETKHPEKTLPKAIHT
TLWRLVIFFVGSMIVMASLIPYQKAGVTQSPFVYVFSQLGIPYAADLMNFVVLTAIISAANSGLYASTRMLWSLANEGTI
PAVIAKTNKRGIPVFALLLSMLGGVLALLSSIYAAGTVYLVLVSVSGLAVVFVWIAISLCELIFRRRFLAAGHQLSELKY
RTPWYPIVPWFAFIASSLSCILIWFDPQQRIALYCTIPFVIACYAAYYLQTLWRKYTTKKKTSTVVK
>SEQF1778_EEI64870.1 hypothetical protein HMPREF0534_1820 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHSLFLLQLIQTVLVAIQLVMIFSANRIKREWLTVSQLCIAVVILADLFSELIFFSYTSVLTGCVLFLQLFLLPMFWKQL
KAFEE
>SEQF1778_EEI64871.1 transposase-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQEWNHDQDHVHVLFRATPHTEMAKFLNAYKSSSSRMVKKQFPEIKQYLWKSAFWTQSYCLISTGGAPLEVVKRYIESQG
RK
>SEQF1778_EEI64872.1 hypothetical protein HMPREF0534_1806, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVLKAVKMRIYPNSAQRNQLWQTFGCVRFVWNQMLNMQIERRKNNPEAKFVNAFGMNNLLKQLKVEYPWLKQAESTALQS
ANRNLADAFQRFFKGQNKFPR
>SEQF1778_EEI64873.1 transposase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
AKDGWTPVFAKKGPSFMNNSIKTILGIKDPYLKLDEKNFDNPIEDQPNQIIVHLIQTYPMHCPKCGHLMCKNGYKTVNCL
GPELHFKPTIWSIKKQKYICKASSSCPEVVTKLAAVEDIHYRNHISLAIKQRAMMLLTKNESQSDLAKELNVSDWTIRRV
ITNLDQFFKPNYHWLPRHIAFDDFKSGRFAPSGMSMILMNIENKRTLDIILSRKNSYLRKYFLRYDRSARLAVQTVTVDL
YTPYRHLIHELFPHALIIADHFHIVAQAYRAFNKIRIQVMNRAGASTHKWRALKHFWKLLLTPANELKYDNYWSRRNFSY
AQLTDVEVIHRLLSFDNELKRAYEYYQNLILVIAHRSKKELKNLLAIKWTQLPQALQKVQRTLRRHKQEIYNSFKYDTYT
NGPVEGTNNKIKVIKRTAYGFRNFFNFRIRILLALPNTYIAINW
>SEQF1778_EEI64874.1 hypothetical protein HMPREF0534_1803, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMLDENLPMRWLAHDYTYSYHTINNFRRSQHASKLIKHAFVYFTMALKDHGLIQNDAVFIDGTKVEADANKYSFTWRRAV
EKYHAKLREKTSKLYEELVEKQVVQEMAPELVTSAEGMEVM
>SEQF1778_EEI64875.1 hypothetical protein HMPREF0534_1802, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
HLEADTVQGKKHQGAVMTLTERQSKVEIVLNVHEKTADAINQHLGQWLRKFPQHFFKSITFDNGKEFAGWREIANQFDLH
TYFAEVG
>SEQF1778_EEI64876.1 integrase core domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDPYRDVIKDKYKTCSATAIFYFIKELGYEGGISILRDYCHQLKKAQYQQPVIRVETAPDDVSQVDWKEDLVLYTREHRP
ITFSLFLYVLGYSRKKFLKLVFDRKQDTLFQCLIEAFQNTGGVPQRIYFDNMKTAVDHAKSSYRKVIWNSRLLNFSKAAG
FIPQACRPFRPQTKGKVEALARTVDRIKVYNHEFQDEKALKNIVKQLETQLNHKISQATDQRPEDLWIKEKEYLQPYNPI
LLNSLVDHDLTRKVSNESMITYLGNKYSVPVKYIGQTVNVKVTDQKLMIYHASRLVRQHYLSDKKLNYHRDDMKEILGTT
IFHDLDDDKLAEQVEINLRMFDQL
>SEQF1778_EEI64877.1 IstB-like ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTIYTQLENNLEKLKLTAIKEYLPNYLNNNDLSLAEALEQLTAKEITYRTERSAKMSIHIAHFPYDKGLNDFDFNFQPSV
DKNRIMNLKSMNFVSLAQNILFIGSSGVGKTHLATGLGMEACRNHLSTYFVNCHELIERLKLAHQENRLEAILKNYSRYK
LLIIDEIGYLPIDDLGSDLFFQLIARRYEKKSTIITTNIPLSKWGQTFSNPTIANAILDRLVHHSEIFKITGKSYRMKDY
QEQQTTETNR
>SEQF1778_EEI64878.1 IS66 family element, transposase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KVAELKFNLALPFHRQIKFWQAVGLRVDVRLLATNIIKVSQTYLEPLYDYLQELIRKESVIHMDETPFKVIDEPNETGYF
WVTRSTKEFSKHQIIMFHYYNTRAGKTIGQIIGHQYRGIIMCDGYGGYSDRLYPQAKFGSCLVHIRREFYHITCLLNKEQ
LKNSKAYRVLQLMRPIFYEEKQLTYSNHKEKLVQRRLHVKPLMDKLYTYLENISFPQGRLKAAINNALKLRKRVYQIFED
GRVPLTNNPVEQAIRPSTLIRKNSLFAKSSAGAQANAIFYTLVATANQNHLNIYKYFKYLFDHLPNRKD
>SEQF1778_EEI64879.1 metallopeptidase, SprT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNAELQQLTEQWSKEYFGREFTHKVFFNKRLKTTGGRYHLSDHHIDINLLMYTEFDLHKLRQVVLHELCHYHLHLLGMD
YHHRSREFKTLLAQVGGSRYAPPTSKRKTNSKKKWHYICTGCGVEFARQRRFNTQRYICRRCGHKFILKN
>SEQF1778_EEI64880.1 Tex-like protein N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIMEEETLQLVSKQLPDIRPQQIKAALGLMDEGNTIPFIARYRKEMTGTLDEVQLQAIRDEYHRVTTLRERQATVINKIK
ELGKLTPALEKQINSATELQEVEDLYLPYKQKRQTKAQQAREHGLAPLANWLLSYPDDDLSAKAQEFINDDVPDAESALT
GAHEILAEAISEMATVRSWLRNYTAQHGQLETSVKRDGEEKDELGTYKQYYEFTSPVQKLNSYQILAFNRGEKEGIINVK
ITLDEEPVMNYLRFRLIKTSKKNDATAFIEEAYKDAYKRFLGPAIERELRRQLTEGADEQAIKVFGENLYHLLMQAPIKG
KVVLGFDPAYRTGCKLAVLDENGKFLTKAVIYPHKPAPEKQRAAAEGEFIDLLEKYHVEMIAIGNGTASRESEQFVAEAL
KKIKRPIYYVIVNEAGASVYSASKEARDEFPDLHVEQRSAISIGRRLQDPLAELVKIDPQAVGVGQYQHDLPKKELSGEL
ETIVERAVNRVGVNLNTASYQLLTRISGLNKTIAKNIVTYRDENGRYTNRTQLKKVPRLGPKAYQQSVGFLRIIGGENPL
DNTDVHPESYQVAEKIIQAAGINVDELGTPSADDKLKKIDVKQFTDDQVGTETVTDIISSLQKPGRDLRDSMPAPLLRHD
VMTIEDLKPGMKLQGTVRNVVDFGVFVDIGVKHDGLVHVSKMSKQFIRDPRAMVAVGDIVDVWIDDVDLKRQRIQLTMLE
PETVTND
>SEQF1778_EEI64881.1 NAD+ synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKYQEEIINALGVNSQIDPQAEVTKRIQFICDFLQTTKMKALVLGISGGQDSSLAGRLSQLAVEKLREETGDNEYQFIA
VRLPYGEQADESDAMFAINDFIKPDKIMRVNIKAATDAMVASLNEAGTPISDFNKGNIKARERMIVQYAIGGENKGAVVG
TDHAAEAVTGFYTKFGDGGADITPLSGLDKRQGKALLQYLGAPAKLYDKTPTADLEEDKPMRPDEEALGVRYDEIDDYLE
GREVSPAAAEKIEGWYRRTQHKRHLPIAPYDTWWK
>SEQF1778_EEI64882.1 nicotinate phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFDYPDDSLTLHTDAYELSMMQTYWKKGMGNRRAVFEAFFRKMPFNNGYAVFAGLDHIIRYVKQLHFTDSDIEYLKSTN
QFDDDFLEYLRNFKFTGSINSFEEGDLVFNHEPIIQVDAPIIEGQLIETAILNILNYQIMIATKASRIKSIVGNQTVMEF
GSRRAQELDAALWGTRAAYIGGFDATSNVRAGKLFGIPISGTHAHALVQVYMNDYDAFKAYAETHHNCVFLVDTFDTLKS
GVPNAIKVAKEFGDKINFIGVRIDSGDMAYLSKKVRKMLDDAGFPDAKIIASNGLDEKTIQNLQMQGAKIDTWGIGTKLI
TAYDQPTLGAVYKLVAIEDEDGQLVDTIKISNNVGKMSTPGKKQVWRINDRGDGKSEGDYITLVDEDPRNEKSLNMFNPN
FPLQQKDVEDFTARPMLKPIWQDGKYVYDEPTLEESRQHRFDSLNALWDEYKRDLNPEVYPVDLSQKCYDNKLKLIHQVH
EYVKSLNK
>SEQF1778_EEI64883.1 UbiC transcription regulator-associated domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSPVYIQIHNQLRQNIEDGEWKVGDKIPAERELANDFGVSRMTLRQAIQALVDEGILERRVGSGTFVANRKVQEKMSGI
TSFTELMHATGKKAASKTISYHLTIPSQTEVEKLKLAPDEQVLRMERVRYGNDVPICYEIATVPANLVQKFSKEEITASF
YRTLEKKANLYPGHATQHISATKATEKIANYLQIKRGDALLRMTQLSYLQDGRPFEYVHTQYVGSRFEFVFEK
>SEQF1778_EEI64884.1 aspartate racemase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQQFFTILGGMGTLATESYVRLLDKRTPIHRDQDYLNYLVVNHATVPDRTTWILDHSQPDPNEALIEDIKQQSLLNPAFF
VLICNTAHYSFDKLQAATEIPILNMLQETVNEIKKIKPDAKRVGLLATKGTLAANLYDPYIEKAGYELIKPTPEIADMTE
DLIYHDIKEAGHSDGKKYHELVRKMIEEQGADVVVLGCTELSFAEEMDPETKYPVADSQSIIVDRSLERALKLRQNNKN
>SEQF1778_EEI64885.1 putative aspartate-alanine antiporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVSNQVFTLFICLAIGFLIGNYKIAGKFNIGATVGTLIVTLIVGQIGSFPRDEMLGTIFFGAFMFSVGYRIGPQLLVSLK
LFGIRILIASIFWMVVAFLVGWSLFSAFKIGPGIAAGVISGALTQSATVASSLQTIGSLPVSQSVRATYEAQLPVAYALT
YVFGTLGVIIFLRDLAPKILGISIAEQGPKMAEHYHFHAKNPNPTWRRTYRIANDSPLVGKTLEEFNRRSNYRIIGLAAF
HDGKMTDHLEYQLQAGDLLTVIGYAVHFDRLMRVPGLTEVLTPTNAPRERAFVLGKNFKPGELALLRQHGVFANIQDPIS
GNQQLINQLRPGDVISLTGNTSRTKAILKKMGRWKAADTAMNYSLFSLGIGCASLLGIIGLKLNSIPLQLGNGTAALIMG
LILSSWIERHRDRKSIPVTVTSFLQSFGLTLFVGTVGLQSAQAFTSAIKSLGIGVLFIGAMISIMPHLLTLFFGRYVLKM
EPLALIGAMTGSGTIAAAMNEISQKAGPEGGAYYAAAFTPAFVVGNIGITLLGPIFVALLS
>SEQF1778_EEI64886.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEKNYSRIYLAIGSLALLTFIGILNETSMNVTYPELSAQFNVSLDVIQWITTGYLLMVTITMGTTAYLLRQYQARWLHL
FAVSFFIIGDLMCALTGNFPILLTGRLIQAMATGLATPIMFHLIFTEIPRERIGMMTGMAAMVISFAPALGPTYGGVISE
MLSWRMIFWILLPIVLISLVCGQLFIRNKPLGNDKAFSYGSLITLAIALISIISAVSSIGKQGFGKQFWLLLLVAIIFFS
TFIYINNHGKSELFDLKVFKIFPLRLSTVTYFNLQFINIGISLVIPIYVQYVLHSSAIVAGLILFPGSLIGAFISPFAGT
LADRYGFATPVISGGILLVIGTSCFSIFQRHLTPLLITIFFVILRIGFNFAFSNTISNASMLVQPQNAPDVNSIFNMVQQ
FAGSLGTSLLASTIALFQMGNSGSLMGRTYAGGRFDFILLGVLAIITLLTMVTNYRMQQKKESISQ
>SEQF1778_EEI64887.1 hypothetical protein HMPREF0534_1793 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPKQGHFAKSMRTKQINDFKVKRNATGATIDDEQLTDFLVVRFALTAKKRVQSGARETAQRFLIEICDSLQENDGDLQAI
IPNLLVSLNARVPWQFYPKILGEWDLLQKFLQKELPAVPLEKRLRIKHPVTTQEMETLIAKLLVRKITAITFINQPGVDP
HKKDQMVTMMLTTIYHDQTIEWDKVRLLLAPFKFEIAPELDEETKDWLKKLAEK
>SEQF1778_EEI64888.1 putative phosphoesterase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIAVSSDLHLDLNHAKVAEIITQQAHYLTRQEIDHYFFVGDAFNDFAQTSVYFAELQSQLPITKVHYLAGNHDMLEGVT
YEQLENLDDDLYFHNRFIDIPQTNWRIIGNNGWYDYSFSTYESNVKGVAKWKRAYWVDRPIMQPMNDPERMAIVLHQVEE
NLKQARNQQKQVIFMTHFAPIREALPHPIIESARRQRMWEMTTAMLGSRHLGALLAKFPEVKAVFYGHLHYAQSLITVGN
IEYRNQAVGVRRKNSENWKGKSLLDQWISCLYTKKI
>SEQF1778_EEI64889.1 amino acid/peptide transporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKQKNLDTSFFGQPRGLSTLFFTEMWERFSYYGMRAILLFYMYYAVTKGGLGMDQATAASIMSIYGSLVYLASVVGGWL
SDRVWGSRRTVFIGGVLIMFGHIALSLPFGVSALYVSIALIVIGTGLLKPNVSEMVGGLYSPEDRRRDSGFSMFVFGINL
GAAVAPWAVPWAANGFGLNLFHGEMNFHAGFSLAAIGMFFGLVQYVVDGRKYLSKDSLYPDDPIDKESLRPVIIWSIVGV
IALVIILGLLAAMGQLNINNIITIITVIAIALPIYYFVMMLNSKKVTKDEKSRVVAYIPLFIAAAIFWAIEESGSVVLAL
FAEQRTILHIGGWHFAAANFQTLNPLFIMILTPFFVALWDHWKKQPSAPGKFAAGLVIAGLSYVWMALPAMIHGTTAGRV
SPFWLVGSWFIVEIAEMLISPIGLSVTTKLAPKAFKSQMMSMWFLADAAGQAVNAQVVKYYSSATEVPYFLIIGAVSIVF
GLILCLFVKKIHGLMDGVD
>SEQF1778_EEI64890.1 hypothetical protein HMPREF0534_1796 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTWKQEKNNYIINLNDSNYDTPIDARLNEDNLSLVGNDEWPNQSFKRVHGDFDVDNFSKEQHAKTNSSTTKDTHSKESST
HARAALKNGRVTTTKTPARLII
>SEQF1778_EEI64891.1 hypothetical protein HMPREF0534_1797 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLGYVQVAVVVLARVPTVARAVSLISKKEESHIVGSYRDDADGAAITLNSDGTGTYVMENPTQTDIFLIN
>SEQF1778_EEI64892.1 hypothetical protein HMPREF0534_1798 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEQQLGKNIANRRHELNMTQQQLAELSNLSINFISRLERGGS
>SEQF1778_EEI64893.1 aminotransferase, class I/II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTQFKYSKRVPADGTDAVGAILQAAADPKIISFAGGLPAPELFPVKEMKATVDKVFEEHGQEAMQYGAAKGVTALREVIQ
QHVKEKENVDSELDNVLVTTGSEQALDLVGKAFVDPGDTVLVEQPTYLCALDVFRSYGANFASVEMDEDGMKMDALEEAL
KANPNTKLIYTVPNFQNPTGRTMTEERRKQLAELAEKYDVYVLEDNPYGEIRFAGQHVPAVKSFDKSGHVLYMSTFSKTL
APGFRLGWLVADEDVVNKLTVLKQSADLHTDNLAQFAVAQFFTDNDVDAHVKEISDLYGKRKDLMLEGIKKYFPEGVKYT
NPEGGMFLWVEVPGVDDTVELFKECLEHDVAFVPGDPFFAGEAQPGAFRLNYSNMKEDQIEVGLKRLGAALTAAVNK
>SEQF1778_EEI64894.1 ribosomal protein L1 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIVHPRGRYNSVRPHLQGGKHKMAKKRGKKYQDALKKVDSKKEYAVKDAVQLVKDIAYANFDSTIEVAFNLNVDTKQAD
QQLRGAVVLPNGTGKDQTVIVFANGENAKAAQEAGADFVGDDDLVEKIQDGWLDFDVAIATPDMMPKVGRLGRVLGPKGL
MPNPKTGTVTMDVAKAVSDAKAGQVTYRTDRDGNVAVPFGKVSFDTDKLVENLATLEDIVAKARPASVRGTYIKHASISS
TFGPSVTLDLTTF
>SEQF1778_EEI64895.1 ribosomal protein L11 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKVANIVKLQIPAGAATPAPPVGPALGQAGINIMGFTKEFNARTADQKGMLIPVVITVYEDRSFDFITKTPPAAVLLK
KAAGVEHGSGEPNTNKVASVTKDQVKEIAETKMQDLNAADVEAAMRMIEGTARSMGFTVED
>SEQF1778_EEI64896.1 transcription termination/antitermination factor NusG [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIGGFIVESHEKRWYVLHTYSGYENRVKSNLESRAQSMGMEDYIFRVVVPEEEVRQVKDGQAKETIEKTFPGYVLVEMVM
TDQAWYIARNTPGVTGFLGSHGGGSKPTPLLPEEVDRIMKRMGTETTVSDIDVKEGDTVKVIAGSFANMTAKVVEVDHEK
QKIKATVEMFGRETAAELGFDQIDTF
>SEQF1778_EEI64897.1 preprotein translocase, SecE subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEENMHLIRFIKSVNHEMKLVVWPTAKENRRDTTIVVSLTLFFVLFFALFDWLIQLMMKLFV
>SEQF1778_EEI64898.1 RNA methyltransferase, TrmH family, group 3 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNENTDFIIGRHPAVMALKSDQEINKVFIQSGLKADAISQIVKLAKERHLVVSNVPKNKLDLMTDRQNHQGVVLAVAAY
QYATIDDLFDNAAKHDEDPFFLILDELEDPHNLGSIMRTADAAGVHGIIIPRRRAVGLTSVVAKTSTGAIEHVPVARVTN
LVQTAKELQERGVWLFGTDMKGKDYRTWDAHGAVALVIGNEGKGISSLLKKTCDEMLTIPMVGHVQSLNASVAASLLIYQ
GFNSRHPLK
>SEQF1778_EEI64899.1 RNase3 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVQADYRQLNGIALAYLGDAAYEVYIRQHLLTKGISKPTKLQHIATHYVSAKAQAALIDLMKEDELLSDEEWSYFKRGRN
ANSHTHAKNTSVMTYRISTGFEAVMGYLKLAGKEERLAELAQWCIEQVEAGRTAHEK
>SEQF1778_EEI64900.1 cysteine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFKERIDMLTIYNTLTRKKEEFKPLHPGVVNMYVCGPTVYNYIHIGNARSAIAFDTVRRYLEFKGYKVNYVSNFTDVDD
KMIKAAAEQGITVPQLAEKYINAFMEDTAAINIEPATLHPRATENITEIIKFVQGLVEKGYAYPKDGDVYYRSRKFNHYG
QLSGQSLDDLEVGASEHVSADEVNKKEDPLDFALWKAAKPGEISWDSPWGKGRPGWHIECSVMSTKYLGKTIDIHAGGQD
LEFPHHENEIAQSEAETGQKFVRYWMHNGFVTIGKDNEKMSKSLHNFITVHEIIKEVDPQVLRFFMATTQYRRPIQYSQA
NLTDAQNNLNHIQIAFDNLTYREQDADEGDVQEVTDRLEQFHHQFITAMDDDINVQNGIATVYELVKYANVYAQQDNVSL
GAIQAIKKELVELMSIFGVKLEASDNQINDEKIKQLIEERNIARKNKDFARSDEIRDNLKKQGIILEDTPQGTRYKKE
>SEQF1778_EEI64901.1 PIN domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQMRRRMITLIYILVGAAVGFYYLPLLWGILNIALNPALLVFIDIIIGALIFWLLSLPLVSGTEKLIQRIEKELTKRSP
VYLFFGTLLTIIGLVLAVLISIPLWRTRIPVINNILPILLMIVFSYFGFRIGTTRLDDWRKAFTHAKSSKTDGGNVIERQ
DDNYHHYKILDTNILIDGRIYDLVKTGFLEGTLLVPNFVLYELQYIADSGESIKRVRGRRGLDILNKLRKEKIVPIEMYD
GDFEDIPEVDSKLIALAKEVNGVIVTNDYNLNKVIQFQNVQVLNINNLAKSLRPRVIPGETMTVVVVKKGTERQQGVAYL
DDGTMVVVEDGRYFMDKQIEVEVTSALQTDAGRMIFARPLHSQRGIDEYTDTEHKENRNNKDKKK
>SEQF1778_EEI64902.1 DNA repair protein RadA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKIRTQYVCQNCGYNSPRYLGRCPNCGEWNTLVEEQVEASSAPTKKATTTLTGLVAKPQKINEIDSTETPRVKTKLNEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLLQVSGQLSDEHHRVLYVSGEESGTQIKMRAERLKVAGDDFYVYPETNMDSIR
DTIRDLKPEYVVIDSVQTMQATDVSSAIGSVSQIREVTAQLMQIAKSNNITIFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDLHHTYRILRSVKNRFGSTNELGIFEMHTNGLTEVKNPSEIFLEERLHDATGSAVVVSLEGTRPILVEIQALVTPTVY
GNAQRTATGLSRNRVSLIMAVLEKRANLMLQNQDAYLKAAGGVKLDEPAIDLAIAVSIASSYRDKGTKPTDAFVGEVGLT
GEIRRVNRIEQRVAEAEKLGFKRIFIPKNNLKGWKPSTNIQVVGVSTLKEALYLALG
>SEQF1778_EEI64903.1 dUTP diphosphatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRGFKIVSSKKGQDIHLPQRQTTRAAGYDFEASEDFVLPSIWKGNFLKALWQIHQQKKLTDEEFKAADSCLKPYLVPTG
IKAYMQPDEFLLLANRSSGPFKRRLILPNGIGIVDADYYDNDSNEGEIFFQLINYGLRDYHIKKGERIGQGIFMPYLTAD
SEEQPTAKRTGGFGSTKE
>SEQF1778_EEI64904.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGCVYMQYRVDGQRIIAFDDQEPLVGEISFPKVPDTNDHVVVERVFVQPTYRGQGIAAELVRQFVDYATKEQYTVKLMC
PYAVAQFKLHPEYQQLLPVADRFN
>SEQF1778_EEI64905.1 ribose 5-phosphate isomerase A [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDQNALKEQTGKESVKYIKSGMIVGLGTGSTVKYMVDELGKQVQEGKIKDIIGVTTSNRTAKQARDLGITIKDIDDVDHI
DLTIDGADEISDDFQGIKGGGGALLWEKIVANASNKVMWIVDESKLVHKLGAFPLPVEVIPFGSQHVFDRLEKKGYKPTW
RMDGDKKFRTDENNYIIDLHLGEIDDPKALADELIHMVGIVETGLFLNRVNDVIVGTSEGPKVLHAR
>SEQF1778_EEI64906.1 peptidase C1-like family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSFSINKEDIASFHKNYRHHPNSSVLENTVTKNGVRNASFNWHSIADNTPHFSIDLKTGDVADQKQSGRCWMFAALNTMR
HDMQQKFNLPDNFELSQAYQFFWDKFEKSNYFYQNVIKTAKKPTDSRKVSWLMNEPQNDGGQWDMLCALISKYGVMPKAA
MPESFNSSNSRGIDEVLNNKLRHDAVILRKMINEDHANEEAINETRRKMLNENYRMLAYTFGEPVSHFDFEYRTKKDNEF
HCDTNLTPQEFFKKYVGWNLDDYISIIQAPTADKKYHQTYTIDMLGNVVGGREIKHLNLPMDEFKQLAIEQLKNGESVWF
GSDVIKYSETKLGIMALNTYDYDKLFDVDLEMTKAEALDYGESMMDHAMVITGVDLVDGKPTKWKVENSWGNKVGHKGYF
VMSDDWMDKYCYQVVINKKYLSEDLKRDYAKSPVVLKPWDPMGTLA
>SEQF1778_EEI64907.1 ABC transporter, substrate-binding protein, family 3 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFWKKALLTIAALTVSTSAGITSVSAASSAVNSELVHKGELTIGLEGTYSPYSYRKNNKLTGFEVDLGKAVAKKMGLKA
NFVPTKWDSLIAGLGSGKFDVVMNNITQTPERAKQYNFSTPYIKSRFALIVPTDSNIKSLKDIKGKKIIAGTGTNNANVV
KKYKGSLTPNGDFASSLDMIKQGRAAGTVNSREAWYAYSKKNSTKGLKMIDVSSEQDPAKISALFNKKDTAIQSSYNKAL
KELQQDGTVKKLSEKYFGADITE
>SEQF1778_EEI64908.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLTNINKSFGNKNVLKNTTLEFPAGKTTVMVGPSGSGKSTILRSLNLLVIPESGQYDFDDHHLDFSQKVSNKDKLAIRQ
ETGMVFQDYNLFPNKTVLGNIIEGPTQVLKQAKKEAIANAHNLLAKVGLADYGDAYPNELSGGQAQRVAIARALAMSPKY
ILLDEPTSALDPELELSVLKVLLQLAEEKQSMVIVTHNMVFAKHVADKIIFVENGEILYDGTPDEFFAPDNPNKRIKNFI
ASMTMENLK
>SEQF1778_EEI64909.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MWEIIKTSLPQLLAAGFKYTIPLAIISFFFGLIIALVTALIRLSRQRGAFMILKWIASFYVWLFRSTPLLVQLFIVFFGL
PYLRIKGVLPHGIKLEPFTAGIITFSLNTGAYASETIRAAISSVPTGQWEAGAAIGMTRLQILWRIILPQALRVALPPLS
NSFISLVKDTSLAASITIMEMFAVSQQIAAENYQPLLMYTLVAMVYAVFTTVLSYFQGYLERVVDRQVNANNR
>SEQF1778_EEI64910.1 Cys/Met metabolism PLP-dependent enzyme [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFNTQLIHGGNSEDPTTGAVSTPIYRSSTFHQHVLGGEPKWEYSRTGNPTRASLEKLIAELEHGTAGFAFASGSAAIHA
TFSLFSQGDHFVVGSDVYGGTFRLINKVLKRFGLEFTVVDMQDLEAVENAIQDNTVAVYFETPTNPLLQIADIKAIADIA
KKHGIKTIVDNTFATPYNQQPLTLGADIVVHSATKYLGGHSDVVAGLAVTNDDEIAEQLAFLQNSIGSTLGPDDSWLLQR
GMKTLGARMRAHQENANEVINFLQNDDHIGKIYYPGLKDFPGHEIAAKQMRNFGAMISFELKDSLDAKKFVESLQLIDLA
ESLGGIESLIEVPAVMTHGSIPREIRLENGIKDELIRLSVGIEDPEDIIADLQQALKKLD
>SEQF1778_EEI64911.1 hypothetical protein HMPREF0534_1780 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTIHELANNPTLSGQVRLIENIVYGAMDGEALHMSILAPWTQRFPKQYQTEPRPLIVFVQGSSWRTPKMGEEIPQLVQFV
QAGYIVATVQHRSSIDGHPFPAFLQDVKTAIRFLRANAQKYAIDPQQVAIWGTSSGANAAMLVGLTGDDPHYKVDLYQDE
SDAVNAVVSCFAPMDVEKTFEYDTNVPGNKLLQYCLLGPDVSKWPEIEKQMSPLYQVKDGQNYPPFLLFHGDADKVVPYE
QMEKMYMRLKDNGNSVEAYRVKGANHERDFWSPTIYNIVQKFLDDQFK
>SEQF1778_EEI64912.1 phosphoglycerate mutase 1 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRYYKIVAKGSEKMAELVIVRHGQSQANRDNIFTGWTDVPLTPKGIEQGELVGKELLRLGIQFSDAYTSYMERAIMTTNI
ILEEINQLYIPVHKTWRLNERHYGALSGRNKDEVKKEIGAEQLHKWRRGFKDLPPQLKERQHDRRYDRLGVKIPLSESLE
MTLQRLLPYWQDHIAPRLIDGHNQLIVAHGSSLRALIKYLDGISDNDIDKVEVPNGKPILYRFGDHLNVIKKTFITMDGE
IDDNTRISK
>SEQF1778_EEI64913.1 hypothetical protein HMPREF0534_1782 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSKIANLINWGLPYCAIAAMAYLIMFPQFVSHGVILGTDSIFHFNRFYDAAKQIQQLNFSYFQSNYSFQQSGRIINAVY
GPLFAYLNGAILGVVGTWYQYQIVTTFIVYLLGGIGMYQLSIRVHSKRTFAIICALIYMNIGWLPRWELAQNMNAWGAAL
APYMVICGVRMIQDHQRPVNWLQLMTLMTIIIQIHMLSSLFFVITLTPFFIIGLIITTNRKKMWIETLKAVGGTIILTAN
VWGALLMLNLHNNIAHPADFSLADNVLLPSMFSSTRDYLIYAMWLLFILQLIYVLFTFKKSLTNTVLTLLGSLVLLLSSS
LTPWSFFQDVVPALGHTLQFPNRLTIIAFPLLLAGVGISATTLDKKAQEIDLRNQLITGILLLMVFLVFTPTTIDVYKRA
ARYDSEIVLNSFSAITRVSENKAALRHSVHDLYPGQLLTMVEKRSPDYLPIPKKYMNQKYVRSYAYEGQIINEAHKYPHT
VLSHGGLQLSWEAGKAGKVRLPIITYHESQLTANGHLLRHYQRSSVGAPYVQQRKGKNTVTLYFKQAKWFTALLVISLVG
LSILAIYGLYYFCTHIKKYFQGIAAGQIN
>SEQF1778_EEI64914.1 Beta galactosidase small chain [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAYTNKLRVIYGDATLGLSGDGFHYIFSYERGGLESLKLNGKEWLYREPMPTFWRATTDNDRGSGFNIRSAQWLAADAFH
KCVGIDLTVDNQHFAELPIAPITNEFSDPVSAENVKIKYTFETLTVPATQVTVTYEVNGQGEIKVTMHYYGHKDLPGLPV
VGMRFIMPTVATGFDYQGLSGETYPDRMAGATEGTFHVDGLPVTKYLVPQENGMHMDTHALTITRDSTQNNADHSREPFS
LTIKQDEQPFAFSCLPYTAEELENATHIEELPLARRTVLVIAGAVRGVGGIDSWGADVEEQYHIPADRDVEFSFVLNTK
>SEQF1778_EEI64915.1 glycosyl hydrolase family 2, TIM barrel domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDADIKWLDEPETFRVNQLPAHSDHYYYGNYDEWRHNNSRFAQNLDGQWQFNFAENPREREEDFYKTDYDSSSFGTIEVP
SEIELNNYAQNNYINTLIPWEGKIYRRPAYALSPDDAQEGSFSDGDDNTVGEYLKHFDLDPSLRGKQVRIRFDGVERAMY
VWLNGHFIGYAEDSFTPSEFDLTPYIQDEGNVLAVEVFKHSTASWIEDQDMFRFSGIFRSVNLLAQPLVHVEDLNIRPIV
TDNYQDGIFNVDLQLHGEKTGNVNVRVIDNDGNTLVNETHPVDSTVEVRDQFLENVHLWDNHDPYLYQLLIEICDDEGNL
VELVPYRFGFRRIEINKDHVVLLNGQRLIINGVNRHEWNAKRGRAITMDDMTSDIQTFKENNINAVRTCHYPDQIPWYYL
CDDNGIYMMAENNLESHATWQKMGAIEPSYNVPGSVPQWRDVVVDRARTNYETFKNHPSILFWSLGNESYAGDNIVKMNE
FYKKHDDSRLVHYEGVCHTPEYRDRISDVESWMYLPPKEVEEYLKNNPDKPFMECEYMHDMGNSDGGMGSYISLLDKYPQ
YFGGFIWDFIDQALLIKDPVSGQEVMRYGGDFDDRHSDYEFSGDGLMFADRTPKPAMQEVRYYYGLHK
>SEQF1778_EEI64916.1 cytidine and deoxycytidylate deaminase zinc-binding region [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKINSSLSEQQKFMKMAIAEAKQARILDEVPIGAIVVHEGQVIGRGHNMREKFQDVTYHAEMLAIMEACTNLGSWRLED
CDLYVTLEPCIMCSGAIINARIKNVYYGAADPKAGAVDSLYHLLNDSRLNHQVNVHSGILGDECSQMLKNFFRKIRRRRK
EARRKNKANP
>SEQF1778_EEI64917.1 glutaredoxin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVTVFSKNNCIQCKMTKRFLEQHKISFIEHNIDEQPEYISQLKSEGFMATPVVKLPNGQAFSGFRPDQLNQLA
>SEQF1778_EEI64918.1 ribonucleoside-diphosphate reductase, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALSDIDMTKVKYYDYNNEVNIPKNGQIQLDKDKLALEDFIKNNVEPNTKSFSSLKERFQWLEENDYIEEEFMNKYSEAF
IEKLYDYLKTQNFHFHSFMAAYKFYAQYALRTNDKEYYLENYIDRVAMNALYLANGDEELAMQLADEIIHQRYQPATPTF
LNVGRKRRGEFVSCFAIQTTDDMNTIGRTINSALQLSKIGGGVGINLSNLREAGAPIKKIQGAASGVVPVMKLLEDSFSY
SNQLGQRQGAGVVYLSVFHPDIIEFLGAKKENADEKIRLKTLSLGITVPDKFYELVEQNADMYLFSPYDVERVYGMPFSY
VDITKEYDNLVANDDIRKKKVNARDLEDEISKLQQESGYPYIINIDTENRDNPINGKIVMSNLCSEIAQVQVPAQVNNDQ
SYSEMGIDISCNLGSTNIANMMESPDFGKSIKAMMRGLTRISDVEDLDVVPTIQNGNRLAHSVGLGAMGLHSYLAKHHIQ
YGSPVAIEFTGVYFMLLNYWSLVASNEIAKERQETFHDFENSKYADGSYFDKYVTKDWGPQSDVVKGLFEGIFIPGIEDW
KKLKENVMQDGLYNQYRLAVAPNGSTSYINDSTASLHPIINRVEERQEKMIGKIYYPAPYLSNDTMPYYRSAYDMDMRKV
IDTYAAAQQHIDQSLSMTLFMRSTIPAGLYEWKNGRTDKMTTRDLNILRHYAYKRGIKSIYYIRTFTDDSDEIGANQCES
CVI
>SEQF1778_EEI64919.1 ribonucleoside-diphosphate reductase, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLEEFKPVNQYKAINWNEVSDMIDKATWEKLTEQFWLDTRIPVANDMDDWRELDDDHQWTVGHVFGGLTLLDTVQSEAG
LTALKEDVKTPHETAVLNNIQFMESVHAKSYSTIFSTLNTPDQIKEIFEWSDTEEYLQNKAVKIANMYLDPSQDPLKKKV
ANVFLETFLFYSGFYTPLYYLGHNKLNNVAEIIKLILRDESVHGTYIGYKFQVGLRDRTEKQQQDMKDWMYNFLYELYDN
EEKYTHLLYDQVGWTDDVLTFIRYNANKALMNLGQDPLFPDTASDVNPVVMNGISTSTSNHDFFSQVGNGYRMGAVEAMN
DSDYDVKDPNAGKDINARD
>SEQF1778_EEI64920.1 aldehyde dehydrogenase (NAD) family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPANNKKQVEKNVLTEEEKKQNAQKLVNDIIAKSEAAFEQLRYYSQEQVDKICQAMALAAEEHHMDLAIDAAEETGRGVA
EDKAIKNIYASEYIWNNIRHDKTVGIIEDNDENQTITIADPLGIIAGIVPVTNPTSTTIFKSIISAKTRNTIIFSFHRQA
MKSSIKTAKILQEAAEKAGAPKNMIQWLPESSRENTSALLQHPKTATILATGGPSLVKAAYSSGNPALGVGPGNGPAYIE
KTANIERSVYDIVLSKTFDNGMICATENSVVVDEEIYDKVKEEFQKWNCYFLKPNEIDKFTEGFIDPKRHQVRGPIAGRS
ANAIADMCGIKVPENTKVIIAEYEGVGDKYPLSAEKLSPVLTMYKATSHENAFDICAQLLHYGGEGHTAAIHTLDDDLAT
KYGLEMRASRIIVNSPSGIGGIGNIYNNMTPSLTLGTGSYGGNSISHNVTDWDLLNIKTIAKRRENRQWVKIPPKVYFQR
NSLKELQDIPNINRAFIVTGPGMSKRGYVQRVIDQLRQRQNNTAFLVFDDVEEDPSTNTVEKGVAMMNDFKPDTIIALGG
GSPMDAAKAMWMFYEHPETSWYGVMQKYLDIRKRAYQIKKPTKSQLIGIPTTSGTGSEVTPFAVITDSETHVKYPLADYA
LTPNIAIVDSQFVETVPAKTTAWTGLDVLCHATESYVSVMATDYTRGWSLQTIKGVMENLPKSVQGDKLARRKMHDFSTM
AGMAFGQAFLGINHSLAHKMGGAFGLPHGLLIAIAMPQVIRFNAKRPQKLALWPHYETYHATKDYADIARFIGLKGNTDE
ELAEAYAKKVIELAHECGVKLSLKDNGVTREEFDKVVDDLARLAYEDQCTTTNPVEPLVSQLKELLERCYDGTGVEEK
>SEQF1778_EEI64921.1 hypothetical protein HMPREF0534_1753 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKVFKVGVIVLILGVILLGIGFFNNGNKAVYFENNRPAIFHSHTKTISTNKAFERIDISASTANVIVREGKKYQITYSG
ISKHSPAVTVHNNVASIRQTDGFPLVFNFNDYQPHQDLIIVTIPHDQAIAGRIHLESGDLTVSQVKMDNIDVNSDAGKVE
YRQVTLRGGSTKLSSGNFTGHDLTVQGQYTVNNQSGDNTVTNTTVDGYFLKTDAGDNELNGEDKGEEPLHQNDDAENVLR
LITQSGDNEVN
>SEQF1778_EEI64922.1 hypothetical protein HMPREF0534_1754 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNERQKYINDLSIYLRQLTDEERNDALEFYDEYIADAGLETRTAIEERLGTPRQLSHKILADYSIKANNESIKEGHPASP
HSSWRVFWWVLVAIITSPITFGLGIAVLALLLAAGGVALSLIVGIVALIFGVAAIAIVSIYIGIGLIATNLFSGLFYFGL
GLTLIGLFLVCLPLIYWLIRVIVQGIANFAKFIYAKVQARRKK
>SEQF1778_EEI64923.1 transcriptional regulator, PadR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIQITADLLDGMVLAILEHKDYYGYALTQRMQSAITISESTMYPVLRRLKKDGYLITYDQPYQGRNRRYYQITEAGKEH
LQRIRKLWTDYKNSLDGIFYGLGEGEDKDE
>SEQF1778_EEI64924.1 large conductance mechanosensitive channel protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKEFKTFIARGNVIDMAVGIIVGAAFTSIVKSLVNNLINPLIGLFIGRIDLSNLVLTVGDAQFKYGSFLNAVINFLIIS
FVVFLMVKAINTFRKKEDNKKDTPSEEVMYLKEITELLKKNKD
>SEQF1778_EEI64925.1 hypothetical protein HMPREF0534_1757 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFKKKNCPTSNSQNGATNAYQKGYDQAVKDYKALEPFRKYPQRIINVTNKFIKGKMHALRDYVDGYEDAKQQLSQN
>SEQF1778_EEI64926.1 hypothetical protein HMPREF0534_1758 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLFNVIFWILAIWFVINVIWMWFQLNNQILQKTFAWINVCAIVIGFWVYYGVSHDASAINGWFIAMNWVNIAIAAIQFYF
GYRTSNDSTTHPAK
>SEQF1778_EEI64927.1 ribosomal protein L7/L12 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAFDKDAIIASLKEASISDLNDLVKAIEEEFDVSAAAPVAVAGAAGGDAAAKDSFTVELTEPGSAKVKVIKAVKDITGLG
LKDAKDLVDGAPSAIKEDVKEDEANDIKEKLEAAGATVTLK
>SEQF1778_EEI64928.1 ribosomal protein L10 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEAAIAKKAEIVKQTTDMLNAAQSAIVVDYRGLTVAEVTDLRKQLRDAGIQMSVIKNKILDRAVEGTDYEDLRSTFVGP
TAVAFSDEDPIAPAKILKKFADDHDALEIKGGFIEKSVKTLDEINEYANMPGREELLSMLASALQDPMRKIARAVKAIAD
KEDEAA
>SEQF1778_EEI64929.1 UDP-N-acetylglucosamine 2-epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHPGQTLTEITIETMTKLEPIIQKEQPDIVLVHGDTSSAYASALVAFYNRVAIGHVEAGLRTWDKYSPYPEEMNRQMIDD
LADLYFAPTQTSANNLKMGNHQHGIIVTGNTAIDALRYTIDHSYHHQVLDEIDPDKKVILLTMHRRENWGKPMEETFKAI
QEIVDQRDDIDVIYPVHLNPKVQAVANKIFGNDNHFHLISPLDVVDFHNIMSKSLLVMSDSGGVQEEAPALHKPVLVLRD
TTERPEGVTAGTLKLIGTQFNNVMRELSSLLNSPEEYNKMSEAQNPYGDGHASERIIDAIAKWAATQKEL
>SEQF1778_EEI64930.1 hypothetical protein HMPREF0534_1713 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGMGMCMGCVMTSALTVVGKAKQSQGNAILNTLQQFAGAIGTSLVAMIVAASQSHLHTTRRISTAIGTQEAFGMLTIFC
IIIWISYYRSVKK
>SEQF1778_EEI64931.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTNTEKISAKVVAAIVATGLMSFCGVIVETAMNVTFPILMREFSITTNQAQWMTSIYLLLVAIVVPLSAILKSSYRTKM
LFTVANLLFISGIIIDALAPLFGVLLVGRTIQGIGTGIALPLMFNIIMEQVPTSRIGFMMGSGNLITGVAPAIGPTFGGI
VASKLNWRWVFYSLIPLLIISFVLGEWGITQKSPIKKQQIDLFSILMIVFMFCGFVTEFSNLGSQAFMTFSVGSALLIGI
LGMGLFARRSLTLKEPILQLRLFRNKKFSGHILGFFLTQLISLGFAFLLPNYIQLVNGNSAMTAGLIVLPAGFVGAIFAP
LGGGF
>SEQF1778_EEI64932.1 transcriptional regulator, MarR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIGRLVKQANNAMNQEMNAFAQQYGLTGTQMSIIDFLTHFPGNSCDQHQIENEFGIKRSTTTVLLQRMAKKNLIECYPS
PEDRRQKIVTLTAEGQKLSSDVSAYITQYEEKLKADFSEQDISKIRRFLSTMIEEK
>SEQF1778_EEI64933.1 hypothetical protein HMPREF0534_1716 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKKQLLWGLLFAVGLFMAASYTIDNRGFHSGIYGIIGCALILIAYAGMNWEKLQSKDQHTRKILVLLSSILGIIIVLDI
AEMILG
>SEQF1778_EEI64934.1 cation diffusion facilitator family transporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MWRYLKRVLIGKPLKTLDEGQTHLTKFKALAMLSSDAISSVAYGPEQITTVLVTLSAAAIWYSIPIAAVVLVLLLAITLS
YQQIIHAYPSGGGAYVVATRNWGSNGGLFAGGSLLVDYMLTVAVSTTSGVEAITSAVPALYKFSIPIGIVIVLLIMFMNL
RGMSESANFLTIPVYFFVIMMIVMVVWGGYNIATGHIHYRAIVDYGTPVSGMSFVLLIRAFSAGSSSLTGVEAVSNAVPN
FNKPKEKNASTTLAIMSAILAFFFIAIIFFSFYLGVVPNSRTTILSQMAAQIFGGHGLGFYLLQLSTAMILAVAANTGFS
AFPILAFNMAKDKYMPHAFMDRGDRLGYSNGIISLAIGAIILILIFHGQTNMLIPLYAVGVFVPFTLSQSGMIIHWFRER
EGFWLGKAFINLVGALISFVLVICLFWQHFANVWPYLIIMPLLLWMFHSIHRHYVKVAAQLRVTEKTKVQLHDYDGATVI
VLVGNVTRVTRGAINYARSIGDYVIAMHVSFDENPGKEHKTANEFKAEYPDVRFVDIHSSYRSIAKPTLRFVDVIAKRAE
ARNYSTTVLVPQFIPKHPWQLALHNQTSVRLRALLNSRENIIVASYNYHLQE
>SEQF1778_EEI64935.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKMKFQKITLFSGVMLALNSLIGSGWLFGAGTAAKVAGPAAILSWILGAIIIISIALTYVELGAMFPESGGMSRYAQYS
HGPFLGFIAAWANWISLITLVPMEAVASVQYMSSWPWAWANWTHHFMKNGNITTPGLLVVFGFMLIFTLINFWSVKLMTR
FTNLISIFKILLPTLTIVMLIATGFHPSNFGHSVTTFIPYGSRSIFEAAAISGIIMSYDAFQTVINMGGEMINPHKNIVR
GVLISMIITAVIYVMLQVAFIGAIDPNLLAQKGWHGINYTSPFADIAILLGMNWLAILLYMDAFVSPFGTGVAFVATASR
ALAAMTHTGHLPQWLGRLERRYMIPRLAMVVDLILAVVMVSLFRNWSLLATVITGSTLIAYLTGPVTVMSLRKMDANLKR
PFHPHFMSWLAPFAFVLTSLSIYWTMWPTTVQVIGVILLGLPIYLYYEVKYRHASGLRDLRNSYWMLVYLVFISIVSYIG
SEGFGGKDWLKYPWDFVVIIICSLGFYRWAVASRMKKVDPAAEKVNAKVKMPGKDQ
>SEQF1778_EEI64936.1 YbaK/proline--tRNA ligase associated domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKNATGIYEYLDDEKINYQIIMHPPVYTAEQADKYVQEYQFARTKNLFLKNKAGYYLVTILENKRLNMKKLKENLSTSR
FSFAHPEELAMKLGITSGAVSPFNLFNDKQHQVTFIIDADIFKNEELIGCHPNINTATVILRTKDLLQIIKLNGNSVKAV
QL
>SEQF1778_EEI64937.1 chaperonin GroL [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKEIKFSEDARSAMLSGVDKLADTVKTTMGPKGRNVVLEQSYGTPTITNDGVTIAKSIELENQFENMGAKLVAEVASKT
NDIAGDGTTTATVLTQAIVNAGMKNVTSGANPVGIRRGIDKATEVAVEALKKMSHDVKTKDDIEQIASISAANPEVGKLI
ADAMEKVGHDGVITIEDSRGVDTSVDVVEGMSFDRGYMSQYMVTDNDKMEADLDNPYILITDKKISNIQDILPLLQSVVQ
EGRALLIIADDITGEALPTLVLNKIRGTFNVVAVKAPGFGDRRKAQLQDIAVLTGGTVISDDLGMSLKDATVDQLGQANK
VTVTKDTTTIVDGAGSKEAIQERVDQIKQEIAKSTSDFDKEKLQERLAKLSGGVAVVKVGAATETELKEKKYRIEDALNA
TRAAVQEGFVPGGGTALINVIPALDKIEADGDELTGINIVKAALEAPVRQIAENAGVEGSVIVNELKNEKEGIGYNAADG
KFEDMIKAGIVDPTMVTRSALQNAASVSALLLTTEAVVADKPDPNANNQAPAAPQGGMGGMM
>SEQF1778_EEI64938.1 chaperonin GroS [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKPLGDRVVLKAETEEEKTVGGIVLASNVKEKPTTGKVIAVGEGRTLENGQKLAPAVKEGDRVLFDKYAGNEVEYNGEK
FLVVHAKDLVAIVE
>SEQF1778_EEI64939.1 hypothetical protein HMPREF0534_1722 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKAFNQCFLFTKLLIKVMDCRYDLLSFKKWSKKVKVFLLHFKENMLYLNMWLALEEFEC
>SEQF1778_EEI64940.1 CoA binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANKKIPRATAKRLPIYFRYLNVLKDANKQRVSSTELSEAVQVDSATIRRDFSYFGELGKRGYGYDVESLLKFFKGILHQ
DSLVSVALVGVGSLGSALLNFNFHQDTNLRISAAFDTKPEYANTVKSGIPIYPSEDMVKQLKEQQIDVVILTVPGIKAQH
VADQLVEAGVKGILNFTPVRLSVPKNVQVQNIDLTNELQTLIYFIKNYTEDSIE
>SEQF1778_EEI64941.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLLQTNDVVRRFGADVLFHNMNMQIQEHGRTALVGRNGAGKTTLLKMIAGITEPDEGTITKVKDLTIGYLAQDQGLDSQ
NSIWTELDTVFAPLHKMETQIHDLEQQLADLDSSDSNYQQILSTYDNLQTAFKKQGGFEYESRMRGILHGFGFGEDSYDT
PINSLSGGQKTKLALAKILLQAPGLLILDEPTNHLDMNVLSWLEDYLKSYQGALLIVSHDRYFLDRVVSDVYDLDNKTLT
HYTGNYTQFVKHKQERLEAEWKHYDQQQKKIAKLEDFVNRNIVRASTTKRAQARRKQLEKMERLERPETDDKSIHFQFHS
EKDSGNEVLDVEQAKVGYDEQILAGPLSFNVRKPQRVGIIGPNGIGKSTLLKSILHKIPLISGTIKLGANLDIGYYDQEQ
QQLHPNKTVLEEVWDDHPEVPEKDIRSLLGSFLFVGDDVYKVVHDLSGGEKARLELTKLSFKPINFLILDEPTNHLDIDS
REVLENAINEFSGTVLFISHDRYFINQVATDILAMEHDGIKHYEGNYDDYLIAKEKESSSDAASHNSTTITKAPAGKQSY
QQSKEQQRARRKIQRQVDELEQQMAELEEKQTAIQEQMSQPEIATDIGKLTDLQKELDELSAKSEEFELAWTEAAEKLEE
FDQEN
>SEQF1778_EEI64942.1 2-dehydropantoate 2-reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALKYTVLGAGAMGLRFGVLLQELAGAKVDFVDNWASQVETIKQQGGVYVSRDHENRHLVPINIYSPEEYDGDPDVFIVF
AKQMTLSDLLQRSAHFFRPDHQYVFSGMNGMGHIEKINQYFPKEHVVAGTCLIGTVLNKAGDVDFIGKPGAGSINLAPQV
GEPDERVKQIVEDFTTANINPHLNDNFYGTLLTKVVFNSVINTICTLFEIQMGQFIDYDGAEKLGKQLINEAFDVAERAG
IQLLSTREEEWQTIKYVSEVTSPLHYPSMYQDMSKNRPTEVDYINGYIYDLGKKYNYEASTHDFLRNLVHLAENTRKFRQ
N
>SEQF1778_EEI64943.1 transaminase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKMNFAQSKLLDTLPKQFFANLVAKVNKKISEGVDVINLGQGNPDKPTPDYIVKSTQKWVADPQTHKYSLFRGLPAFKE
AAANFYSEKYGADFDPEKEVAILGGSKIGLVELPWALMNPGDTFLLPDPGYPDYLSGAALGEVNFETVPLLAENNFLPDL
EAIPEEVAQRAKFFYLNYPNNPTGAVATPEFYRKLVAWAKKYHVGIISDFAYGAIGFDGQAPVSFMETPGAKDVGIEFYT
FSKTFNMAGWRIAFAVGNADIIEALNLIQDHLFVSLFPALQEAAIDALTLPQRDDAIAEIVGRYEERRNAFINAAEKIGW
HAFTPQGTFYAWMPVPKDYTSESFADLLLDKAGVAVAPGNGFGKHGEGYVRIGLLIEPARLTEAVERIAKLNLFS
>SEQF1778_EEI64944.1 putative phage head-tail adaptor [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVKVMKRKIALAQLDIQLGNPAENYQKAKQAIEEAASHHADIVVLPEMWNTGYALDQLSDLADENGQKTQKFLSELALE
NLINIVGGSVAVRCGQSFFNTTYVYDQKGNLISSYEKVHLFGLMNEDRYLKAGQKENHFELAGVPSASFICYDLRFPEWI
RTVARYGTDILYFSAEWPSKRIKQWKIMLQSRAIENQAFVVAVNRVGTDLENSFNGHSLVIDPLGQIIHDAGEVEQVSYA
EIDLAQLAQVRGPIPVFKDRRPSLYH
>SEQF1778_EEI64945.1 glutamate 5-kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTHKIQKVVVKIGTSSLVLPNGKINLRTIDQLSFVLATLNNQGYQLILVSSGAIGVGLASLGLTDRPAEIAQQQALASIG
QAALMRIYSQRFLDYQTHVAQLLLTRDVLTYPVSRQHTLNTINALLQQNVIPIVNENDPVSVDELDHYTTFSDNDELSSQ
VAIAIDADELIILSDIDALYDKDPHKFPDAQIIKEVPFLTPEIENVASGSSTRFGTGGMVTKLRAAATMMQAGKQMILCN
GRDPKILFDIFDGHTIGTHFGK
>SEQF1778_EEI64946.1 glutamate-5-semialdehyde dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIMNQDLITIGKRAQIAANKLALMNTATKNKALLQLADDLIKNKNQIIAANQQDLAAATQMPTKFTDRLMVNSQRIADMA
NGLRTIADLNDPTSQIDKGWITKDGLQILQRRVPLGVIGIIFEARPNVTVDATGLTFKSGNAVILRGGKEAIQTNTALVK
ILRESLQSQHLPVDAVQLITATSHAIADEMMNLTNYIDVLIPRGGRALIQRVVTTATVPVIETGAGNCHIYIDKDADLTM
ATNITVNAKVQRPSVCNAAEKLLIHRDIAAEFLPVIAKALMEHGVQLRGDEMACQLVSTIRPVTEEDWETEYNDLIMAVK
IVDSLDDAINHINHHSTHHSESIITNNITRGRYFQQAINSACVYVNASTRFTDGGEFGFGAEIGISTQKLHARGPMGLQQ
LTTIKYEITGNGQVRK
>SEQF1778_EEI64947.1 pyrroline-5-carboxylate reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKITIIGVGNMGSAIMKGLSRTQNFTLSAMNPVNSRVTSLAKKLGFKLVNTNSEVVNLTPDIVILTTPAPITTVVAKELA
VLNDHTIFISAAAGITHEDLAKVLPNKEIVNIIPNTPVEVNAGTIGLALPTGISAEAISKVMTVLDSLGDVIEVPERQLD
IIGVIGGCGPAFVDVMMDAMSDAAVKHGLDRQTAYEVIASMVKGTGTLAYDSKLAPALLRDQVTSPAGTTIKGVEALEKN
GFRYAMMDAVDKANGES
>SEQF1778_EEI64948.1 putative glycoprotease GCP [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTERTLTLAFESSCDETSVAVIENGTKILSNIVATQIDSHQRFGGVVPEVASRHHIEQITKCTNEALEQADVGYDDLDAV
AVTYGPGLVGSLLIGVTAAKTIAWAHNLPLIPVNHMAGHIYAARYVGEFKYPQMALLVSGGHTELVYMPSEHEYQIIGET
RDDAAGEAYDKIGRVLGVNYPAGKTIDEWAAKGKDTFNFPRAMEKEDNYDFSFSGLKSAFINTVHNADQRGEKLDKYDLA
ASFQQSVIDVLAEKTMRALDDYPVKQLILAGGVAANHGLRARLDHDMKKFHPDVPMLQAPLKLCGDNAAMIGAAGYVNYK
HGDRAGLDLNAVPGLMFDRIQNK
>SEQF1778_EEI64949.1 ribosomal-protein-alanine acetyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFEKFKEWFINTTNSTKRPILDFTRRIVMISGHQYMVRMVKEQDIQTLVEIEERIYGKAPWSYAAFRIELQRPCDRLYLV
VEDDQQIVGFMGTAIDWYHYDLHITNIGITPSYQNKGIGTYLISTAKNYARHLKLHSLSLEVRVHNVSARRLYESLGFRN
QHIKSRYYLDNHEDAVDMQANLLR
>SEQF1778_EEI64950.1 universal bacterial protein YeaZ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKILAVDTSNHPMSVALVEDEQLLATTTLNMVRNHSIYLMPAISKLFELVQWQPTDIDRVVVAQGPGSYTGVRIAVTTAK
VLADTEKIDLVGVSSLAVLARNVVPTSSAIIVPFFDARRGNVFAGAYQWENGELVNKIEDQHLGIDVLLNQLAKLDQQVV
LVGHMTDKIQAKYDQLPANVTLLPRSYSIPSTYQLALAGKIKEPVKEIDPFVPHYLRITEAEANWQKLHPGEKRKNYVRE
V
>SEQF1778_EEI64951.1 UDP-glucose 4-epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSILVAGGAGYIGSHMVKDLIENGEDVVVADNLSTGHRDAINPKAKFYEGDIRDRQFLDKIFDNEDITAVVHFAAFSIVP
ESMSKPLKYFDNNTGGMITLLEAMHDHDIKYIVFSSTAATYGVPEHMPIKETDPQNPINPYGLSKLMMEEMMAWADKAYG
IKFVALRYFNVAGAAPDGTIGEDHGPETHLVPIILQVAQGKRDELSIFGDDYNTPDGTNVRDYVHVMDLADAHILAIKYL
KEGNKSNAFNLGSSTGFSNKQMLEAAREVTGKPIPAKMAPRRPGDPDSLVAASDKARNVLGWSPKYDDVHDIIATAWKWH
STHPKGYDDRD
>SEQF1778_EEI64952.1 Ppx/GppA phosphatase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNEQYLAILDLGSNSVRLKITKIQDNGSFETVQYEKRYVRLASNMGPEKMLKSAPVKRTIDALKEFRTICDRYRNKKLT
IIAVATAAVRQAQNQLQFLEKVKQETGFEIHVISGEREAYLDYVGVNQTLPIDKGIIVDTGGASMELISVNNGEAEEAIS
IPIGSVSISQTYHLEDQINPADLFDAMIKIDEVLSQQLWLNRMRETKIVALGGCNRALAKVYRWQQALNPDEVRPVHGLT
MRSEEAFLIMRQLLETDRQTRAGIRGITKVRADVIVGGLLPLISLVRQLSINEICFSNSGLREGLLFKYLEQQINFDQLK
SSL
>SEQF1778_EEI64953.1 polyphosphate kinase 1 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYKEFYKPQNYVNRELSWIDFNGRVLGEATDTANPLLERANFLGITQSNVDEFFMVRVASLHKLAAANVTTTDASGLTPE
EQLDAVNEKEHRMVKQRYEVYNQQIIPDLAKNNIHILHVPKLDEKQYEFIRRYFNDELMPVLTPMADDASRPFPFISNNS
LNIAVQLRRQIRSTSEPVAEEILEGDQEVHRPQMEPHDDRQEADIKFATVRVPEIYKRLVRLPGENSFILIDEIITEFLS
ALFPGYEILATASYRVMRDMDLDVAEEDTSDLLRAVKRQLREREHGQVMRLEVPASIDEWLKDQLIDNLHVSERSLYEVD
GPVDLTFLKKLSGMVDGHDDLRYPPYKPYLNPALDMDHNIFSSIRQKDYLMQHPYDNFQAVVNFIHQAAIDPDVLAIKMT
LYRVSGNSPIIKYLGMAAQQGKQVTVLVEVKARFDEQNNVRWAQRLEQMGCHVIYGLVGLKTHCKVALVIRRDEDGLRRY
MHLGTGNYNDVTAHFYTDMGLFTCDHELGIDMTNLFNMLSGFARPAYFNELRVSPDGIRTFINAKIDEQIENAKNGNPTL
IRMKMNSLSDKQIIARLYAAAASGVKVELLIRGITCLRNDLPELHGNIEVHSIIGRFLEHSRIYYFKSNGHEEVYLASAD
MMTRNLNRRVEELYPVTQPDTKAHAIHIFDVMWKDNVKARRLVGDHYERIDRGDVAPFSSQEYFVKQAMKLNAREKKEKK
AKKHFSSVFETLTRHVPNLHLDERKDE
>SEQF1778_EEI64954.1 hypothetical protein HMPREF0534_1737 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRSLTAIIYLEPDQVNLRIIEIPTLKVINNVRSGLLNIGNAKVANYSENMTAIVNNIEGFKQIINDYQATPVKFYGDLE
DLDPVATRYVADQLEVRTGLQIEWLNNNQLMAQSMSYLLTLLPDFEKLSKHNMYLLSIGLSSTTLAYFHHGSFERAWDID
LGNAKISQLVGRLRKTATNPTEIIQDYISSKLEYLTPELTKKKHTVMMVQNALSLNKLFLPNDQQIAEVPLNKFHDDYQK
ILLPVKDGLMKNIQIDDQQFELLLPNYLVTARTVRLIQPAGLYVTDISTMDGISHGIGVDNPKTRWQINEMIRTAADNIS
SRYGVDSAHRDFVTRFSLQLFDQLRPIHRLGQHERLLLEIASRIDDIGNFINQRGHYRHSAYIMEANPLIGLSDKDNRII
AEVARYHSAESPDISQAHYRHLDDEIQMPVAKLAAILRLVDALDDSRLQKISSIRLKLVGDSRLIIEAIANDDLVLEKWS
FSKKSQLFKDVYGIEPVLTERSDH
>SEQF1778_EEI64955.1 Acyl-ACP thioesterase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELKQEAQTFEMPHLLTYYECDETSHPSLSMILSMISMVSDEHSMSLGMGTKEIQSTGGTWVVSGYEGHLSAKQPSFGET
VILGTKAVSYNRFFAVRDFWITDKEHQIEYARIRSIFVFMNLKTRRMQSIPLALIEPFNAPVAKRIPRLKRPQKLDENGS
IIKKNYQVRYFDLDANHHVNNARYFDWLLDPLGRDFLRENQIKRFNLQYLQEARNGEIVESKVNKLQTNNGTVTYHQIGV
DKQVDAIAEIEWY
>SEQF1778_EEI64956.1 S-adenosylmethionine-dependent methyltransferase, YraL family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQQISSFNDHQSGSLYLVPTPIGNLDDMTFRAIKTLKEVDLIAAEDTRHTQQLLNHFDILTRQISFHEHNTEQRVPELIE
KLKAGYSIAQCSDAGMPSISDPGKELVAAAVREGLSVIPLPGANAGLTALIASGLVPQPFYFFGFLGRKHQQQVATLEQL
KEREETMIFYEAPHRLKKTLATMAEVFGNERRVVLARELTKRYEEFTRGTLAEATAWFEDHQPRGEFVILVAGNEHPTEE
TDNDIELPLTEQVDKEILNGLSTNAAIKLVAKKNNIKRQELYKQYHQL
>SEQF1778_EEI64957.1 hypothetical protein HMPREF0534_1740 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEEYSSDNLYEQFAQVMNQTQDLVNKMEQLQAKIIAISEENVELSIENKHLRQMIKEKQSHHSENQLSGSRQNLKELYQ
QGFHVCSEYYGKRLEPNESCTFCLDAIFGHEQGMTK
>SEQF1778_EEI64958.1 DNA polymerase III, delta' subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEQGQTRTEKLQPAIITRFQKILLNKELAHAYLFVGPGGSGKMSIAQWLSLRLFCLHPQDNKPDLTCDECQRILSGNHP
DIVYAAPEGRQIKVDEIRHLKAEFSKSAVEGNKKIFIIKDADKMTNGAANSLLKFIEEPGTGVYIFMLTTNKSAVLPTIR
SRTQVIELPPLKRDALLTVLTEHNIPSSQQQIAVGITDSVAMIEQWQEDNWFESAIKGVIQWYQDTTRNGMLGFVDVQTI
LQKVATDRDKQQVILDLITLIWRDTLMVNSGITVANRLHFNNILGEMGEVVRKYSPQQLLAASQLTLETRHMLEQNISFQ
NIVEQLTIRLVQVLSIS
>SEQF1778_EEI64959.1 hypothetical protein HMPREF0534_1742 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKMIIAIVQSKDSNRLRKAFNKADIHVTQLSTTGGFLREGNATFLIGIEDERVQEVLSVIKKNAESREQYVTSQMHMDVE
GGSAFPVNVKIGGATVFVLPVEDFIKF
>SEQF1778_EEI64960.1 dTMP kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDGKFISFEGPDGAGKTSVIQQIQQQLEDQLGTEKVMYTREPGGNKISEQIRQVLFDGQNTDMDGRTEALLFAAARRQHI
VSEIIPGLKAGKVILCDRFVDSSIAYQGAGRGLGEKEIWQINQFAIDGLMPSLTIYLDIESEIGLRRIAEHRSNQINRLD
KEKLAFHQTVRQSYLKLYKNYPERIKLIDASQPLEKVIEDVKATIHDRFSDLF
>SEQF1778_EEI64961.1 hypothetical protein HMPREF0534_1744 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFFKRPTKEVERERNQRLLEAVYSTKASWDHARETERAVYEANVNSELHYRSRIQEQKFLYLYKIARKFKVHGTLNDGVI
DR
>SEQF1778_EEI64962.1 recombination protein RecR [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIQYPEPLAKLIESYTKLPGIGQKTATRLAFYTLSMQEDDVTNFAKSLLSAKRDLHNCSICGNITEDDPCPICRDKTRDH
SQILVVEQLQDVMAMERMHEYHGLYHVLHGVISPVAGTGPEDINITSLLKRLKKDNEVKEIIIATNASSDGELTAGYLAK
LIKPAGIKVTRLAHGLSVGADIDYADEMTLFKAVQGRTEM
>SEQF1778_EEI64963.1 DNA-binding protein, YbaB/EbfC family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDDIMMRGMNMQQMMKQAKAMQKKMMAEHEELAKQEFVGKAPDDMVTATFSGDNQLIDLKIKPEAVDPDDIDMLQDLVIA
AVKDGMKQVNDATQQKLGKYTQGMGL
>SEQF1778_EEI64964.1 DNA polymerase III, subunit gamma and tau [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSYQALYRVWRPQRFDDLVGQQIVTRTLKNAIITHQISHAYLFAGPRGTGKTSAAKIFAKAVNCHHSKDGEPCNECEICK
AITNGQLNDVIEIDAASNNGVEEIRDIRDKAKYAPTQADYKVYIIDEVHMLSTGAFNALLKTLEEPPANVIFILATTEPH
KIPLTIISRVQRFDFRRISAEDAFNRMKYILDQKEVTYDEKALWVIANAAEGGMRDALSILDQVLSFSDNEVKLDDALLV
TGSVTKQLLKKYFLEISKHEGATALDTMKDILDEGKDGQRFIEDLISFIRDILLYQESPSLISVESTGLKQEDFEEIVQL
ASSATLYQMIDELNNIQEEMRFTTHPDVYLEVLTIKLAQIEPQKNIQSAPAVSSDTNTEATKTIEKLQQEIQQLQQTVKQ
LQNVPAKASRPSPRQQNEQPRVQQKKVQVNLNKIYPVLENATRQDLINVRELWGDMLNLLSVPQRSLLHVSQPVAASAVG
IIVAFDYPFLFQQAADDTTLLENMESALQRLTGNERQVVFVPKDKWPKIRQDFIKDHGFGKNQQKSQPIKQKPQTTEESG
QTHAATPAPMEEPPLPPEDETLTEEKSPQEDNQVATAQKLFGSDIVKVEDN
>SEQF1778_EEI64965.1 phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSWKDTYKVWQERTDLESDLKQELAAMSDDKEIEDAFYGPLSFGTAGMRGLMGPGINRMNVYTVRQATEGLATLMDSLGD
DIKKRGVAIGYDSRHNSRKFAHDAARVLGAHGIKVYIYDNLRPTPELSFAVRHMGTYAGIMITASHNPKEYNGYKIYGED
GGQMPPKESDMMTGYIRKIDDIFDIALADEQEMLDNGLETIMGEDVDAAYLANAKGVTVNPELAKEYGKDMKFVFTPLCG
TGRMLGERALRQAGFTNYEMEPTEAQPNGDFPGLEHPNPEFPEAFVRSIALGKKVDADVLIATDPDADRLGCAVRQPDGE
YQLLTGNQIASIMLAYILEAHKQAGTLPKNAAAVKSIVSTNFAAKIAESYGVEMINVLTGFKWIADQIHQYETGKADHTF
MFGFEESYGYLIKPFVRDKDAIQSLTLLAEVAAYYRSRNMTLYDGLQELFKKYGYFREKTIANTYAGVDGPAKIKALMKK
FREEAPTHFAGHQVVVTEDFANGTKTTADGEVSELGIPESNVLRYILDDDTWIAIRPSGTEPKLKFYIGTSADTLDKANE
KLADFEKALQEFAE
>SEQF1778_EEI64966.1 thioesterase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGAIKCNDTLAVSIHRIRNSDLNEHGTVYGGRILELIDGQASVAAMRVARTTVATVSMDEIQFLRPFDLQDSMCMEAYVT
GFGKRSIEVFTKVIGEHLMTGERFLGFYCFMTFVILDPEKQTAFNKLIPETEEQKTLMATYSQRVKQRQIQRQKQQEFLP
HISISKPW
>SEQF1778_EEI64967.1 ABC transporter, substrate-binding protein, family 3 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKKIINFGLVLILLLPLIVFASGFKIQNENYRANYTDTWERIKKRGTLLIGVDDTFVPMDFRKKNGQLVGYDVDLSRAV
AKVLGLKADFQSIDWSMKETELKNGTIDCIWNGYTATPSRQKRIAFSRVYELSGQSLVVRKDSKIKNFADMKGKTLGIQE
SSTAQTDFDKYPQVLKKLVKGQKPILYQDNSSAFMDLQAGRTQGVLAGTVYAGYYATHIANNNNYKLISASAYPADRVAI
GMRKGDRTLINKINYALGVLQKDGTLRRINKKWLGINSNYLGPVAEFQKSNNNR
>SEQF1778_EEI64968.1 peptidase, ArgE/DapE family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENDEKIKLLQKLIQIDTVNGNEKDEASYIKRTLEDHHISCELVPFAPNRTNLIAEIGDEKGPVLALSGHLDTVAAGDFQ
KWTYPPFAGQLVDGKIYGRGAVDMKSGLAAMVGALIELKEAGLPKHGKVRLIATVDEEVGGQGSLEMTDKGYVHDVDVMV
IGEATTGQIEYAHCGSFDYIVESYGKLAHSSQPELGINAVTNLVKFINKESRAFDDAAVSPTLGKLIHSVTVFHGGEQLN
SIPDYAYLKGNVRTIPECDNRETGKRLQSIIDELNKETGVELKLKIVASFMPVVTNKQDRFIALAQTAIKKVSGRQPDVV
ISHGATDASRYVLDNHNFPIIEYGPGIEKLSHQIDERIALDDYLTAQQAYVEIAKQYLNNTKDDEQASS
>SEQF1778_EEI64969.1 thioredoxin-disulfide reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAENKQYDVVIIGAGPGGMTAAMYASRANLSVLMLDRGIYGGNLNNTAEIENYTGFKSVKGPELAQQMYEGATQFGAEYA
YGTVTKVELDGDLKKITTDMDETYTAKAVVIATGSDQRHLNVPGEEEFGGRGVSYCAVCDGAFFKGKHLIVVGGGDAAVE
EGVYLTQLASKVTVLVRRDELRAEPIIQAEAMNNDKIEFVYNTSVTEIVGDDIKVTGVKTHNNKTGEDGEMAADGVFIYV
GNFPKTAAFKNLDILDDQGWVKTDERMRTAVPGIFAIGDVRETPLRQVATAVGDGAIAGQQVYQYIKSMD
>SEQF1778_EEI64970.1 cysteine-rich domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISNYIFSIFKEAKCIQLMHACMKVCIFSTCIVDLLYPDVGKATVELLQRFGCETFFPDKQICCGQPTYNSGYDRETITT
FKNQLDALLSIDADYIVGPSGSCVAMLHEYKNIFKDDPEYSKKAQILYDKSFELTQFIYRVLGILDCGAELDDTATFHRS
CHMTRLLGERTAPIVLLEHVKGLELIPLHNIQLCCGFGGTFSAKEPLLSEAMVDDKANNVLKTKAHILIACEQTCLMNIG
GRINRRRDGSHITIMHIAEVLNHNVDTSRITYVKDTDHVMVPANGNGVF
>SEQF1778_EEI64971.1 iron-sulfur cluster-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGIATSDKPFTERIKDAEADKFMRASVAKAQDAQFQKRTEARRQLGHWGGWRDLSAEIRQHVIKHLPDYLEEFSDNVQKN
GGHVFFAKDGNEASAFIKQLAIKKNVHHVVKSKSMVTTEIGLDKELLTIPGLSLMETDLAEFILQEDNWDEPTHIVFPTL
HKNRNQIQKVFEKLGYDGDNDPEHMARFVRHYLRNYFMQADFGITGCNFAIADNGMINLVTNEGNADISMAIPKTQVVVM
GMERIVPSLKEAEVLDNVLCRSAVGQKLTSYCTFSKGKEADEADGPDDFYVVIVDNGRSKMLNTDFEPMLQCIRCGSCLN
VCPVYRQVGGKGYGSIYPGPMGEVLSPILGGYQEFKELPYACSLCAACTETCPVKIPLHELIRHHRYVEMDELHLDHNPS
NALLKAVGKGTSSPTLFNDAMRFAHIALEPFGKKTTPEDIKNLYPDGKINHLPAIAPKLAHGWVDVRDLAVPPKYHQNFR
HWYRHYEEEEEQEND
>SEQF1778_EEI64972.1 hypothetical protein HMPREF0534_1699 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTDYLQEANTAKNQEDFLNRIAKAANRPRHTLGEDPFVPVNNLPETTLAGKSQDELLELARKNSEEVHVDFHVIKSADLG
HTLNDFIQEKEIKSLMLPSFDEEKWQDYSLGKWQDNLRVDPIYYWEPEFGRQNIVNANNSDGAIGFADFLLAESGTVTVA
TYPQQGRMFHFLPTHYLAIVPKSKILPRSRQAMDYYQKAIQDGNLQTSNINFITGPSNSGDIEMVLIVGVHGPLDMEYVV
VEDM
>SEQF1778_EEI64973.1 UTP--glucose-1-phosphate uridylyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRVRKAIIPAAGLGTRFLPATKALAKEMLPIVDKPTIQFIVEEARKSGIEDIVVVDGKNKRSIEDHFDSNPELEDNLRS
KHKDEMLKMVEETTDVNIYFIRQSHPRGLGDAVLTARDFIGDEPFVVMLGDDLNNINNKNEALTKQLIESYNQTGASTLA
VMRVPHEDTAKYGVINPSKEVTPGLYNVTSFVEKPAPKDAPSDLAIIGRYVFTPEIFDVLAKTKPGKGGEIQLTDAIDTL
NQTQRVFAREYKGDRYDVGNKFGWVKTNIEYGLEHPQVKEELREYIKELGAKLAAEDKQNNSKK
>SEQF1778_EEI64974.1 glycerol-3-phosphate dehydrogenase [NAD(P)+] [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEKIAVLGAGSWGSVLANMLTENGHDVTLWSRNEEQVKQLNTEHTNPRYMKDFVYSTKLTATTDMKKSVKGASVILIVI
PTKGLREVAKKLNTILTELHQKPLIIHATKGLEQNTYKRPSEMLSEDISPENRQAIVVLSGPSHAEDVAIKDMTAVTAAC
EDLTSAKKAQKLFSNSYFRVYTNDDVIGAEFGAALKNIIAIGAGAIQGLGYHDNARAALITRGLAEIRRLGVAFGANPMT
FIGLSGVGDLVVTATSKNSRNWRAGYQLGQGKKLQDVIDNMGMVIEGVYTTKAAYELSRKRQVQMPITEALYRVLYEGED
IKTAISQLMDRDLTSENE
>SEQF1778_EEI64975.1 prolipoprotein diacylglyceryl transferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MINPGIKAALNPIAFQAGPFTIHWYGVIIASGVVLALLLAVREGKREGISEDDFYDYLLWALPIAIICARIYYVVFQWSY
YSQHPSEIIAIWDGGIAIYGAILGGFIVLLVFCHYRHLSSWLMMDIIAPTLIMAQGIGRWGNFMNQEAFGDITTRAHLMA
QHIPNWIINQMYIGGHYRIPTFLYESLWDLTGFALLMLLRHRKHLFRRGEIFLTYVMWYAFGRFFIEGMRTDSLMLGNIR
ISQLLSVVFFVSALVILIVQRHKNIPWYDNGINKN
>SEQF1778_EEI64976.1 HPr(Ser) kinase/phosphatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPNNVTVQELVDKVRLKVLQGEDYLQRKITTSDISRPALEFAGYFKHYPAARIQLLGITETSFAKDLTHEQREEYMTKMC
MPQTPCFVISTNLPIPKELKKAAEDAKIPILGTHLTSSQILSNMTSYLLERLAPRKSLHGVLVDISGVGVLITGDSGVGK
SETALELVRRGHRLIADDRVEVYARDEQTLVGTAPQILKHLMEIRGIGIIDVSTLYGTGAIMPSDQISLIVHLETWTPDV
QFDRLGDRGDTQIIQGVIVPKVSVPVKTGRNLAIIIESAAMNYRAETMGYDATETFDRNLNQLIKQNSERDSKNNKGSAN
>SEQF1778_EEI64977.1 hypothetical protein HMPREF0534_1704 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEFWKRVLIDTILFIALAGLFAGTGMFYITSAWIAPLASFVLAILNVAIKPILVILSLPINILTLGLFSVVINGIMLQLT
SMLVGSANFHFSSFGSAMLIAIIMAIFNAVITSHEDRL
>SEQF1778_EEI64978.1 PspC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRESQHKRLTRSGSDRMIAGVFGGIGQYFKIQPNILRTLYVLLTIFTGFVPGIIIYIILIIIMPADPQNPDLLGFLKSFS
ESQKTSQQPHQRSRRTLTNVEEKDIKRNGRS
>SEQF1778_EEI64979.1 peptide chain release factor 2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAQPDFWNDNEQAQKVIAENNILKEKRDTFVNLRDQISDLETSLELLAVEPDDDLQKDFEASFTNTQKALEQYRLTQLLD
GEYDAKNAILEIHPGAGGTEAQDWGEMLLRMYIRWGEQHAFSVETASYEAGDEAGIKSVTLLIKGHNAFGYLRSEKGVHR
LVRISPFDAAGRRHTSFASVDVMPELDDSVEVDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHIPTGIVTSSQAERSQ
LQNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLDIGWGSQIRSYVFHPYTLVKDNRTGYETHNGQAVMDGDLDPFIDA
FLQWKLSQKNPQ
>SEQF1778_EEI64980.1 hypothetical protein HMPREF0534_1707 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLITTRYGSKVTHGGTAAVLLYNGGSIVELNEAKKQVESMQKEVTHFGRSL
>SEQF1778_EEI64981.1 preprotein translocase, SecA subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANILKKWIESDRRELRRINKIANKVESYAKQMSELTDEQLQAKTDEFRERYKKGESLDHMLPEAFAVSREGAKRVLGLY
PFHVQIMGGIVLHEGNIAEMRTGEGKTLTATMPVYLNAISGKGVHVITVNEYLSKRDATEMGQLYNWLGCSVGINNSEMS
PDQKREAYKADIMYSTNSEIGFDYLRDNMAVYKEDQVQRGLNYALVDEVDSILIDEARTPLIISGPGTGTSKLYKQTDRF
VKQLKKDVDYKIDLESKTVSLTDEGIKKAEKYFNLKNLYDPENTALTHHLDQALRANYIMLLDKDYVVQDGEVLIVDSFT
GRVMEGRRFSDGLHQAIEAKEGVEIQEENKTMANITYQNLFRMYNKLAGMTGTAKTEQEEFREIYNMETITIPTNRPVQR
KDEPDLLYPTLQSKFAAVVDRIKKLHAKGQPILVGTVAVETSEYLSQLLDKENIPHVVLNAKNHAKEAEIVKNAGQKGAV
TIATNMAGRGTDIKLGPGVREIGGLAVIGTERHESRRIDNQLRGRSGRQGDPGLSQFYLSLEDDLMKRFGGDRIKAFLER
MKVNDEDAVIKSRFLTHQVESAQKRVEGNNYDSRKNVLQYDDVMREQREIIYKERQQIITEDKSLKWVLMPMFRRTIQRE
VDQHTLGDKKDWDLQGIVDFAEEVLIKPDTITVKDLEGKSPQEMVDYLMTFAQGVYKEKQKQLYDPAQMLEFEKVVILRV
VDSHWTDHIDIMDQFRQSVGLRGYGQLNPLVEYQTAGYHMFEQMIADIEYETTRLFMKSEIRQNVTR
>SEQF1778_EEI64982.1 ribosomal subunit interface protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKFNIRGENVEVTESIRDYVVKRISKLQKFFEDSVEATAHVNLKVYPNRTYKVEVTIPLPYLTLRAEETSNDMYGSIDL
VTDKLERQIRKYKTKVNRKSREKGLKNLEFIPSDNDGTDGQDDELKIVRTKQVSLKPMDPEEAVLQMDMLGHNFFIFQDA
ETNGTSIVYRRNDGRYGLIEAE
>SEQF1778_EEI64983.1 comF family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MECLLCNKGISFQLTLKDIFSFREIITPVVCTKCKESFVRWDDHGCAGCGKENVNKNGFLCADCQTWKKLYGWYLHHRGL
YRYNEAMKEYMQRYKFNGDYRLCVVFQRELSKVVNEQKADLIVPIPVTSTTMQTRGFNQVIGLLREVPYQSILRTKISSK
VAQSSKTKEERLATKQPFILDAPEKVINKKVLLVDDVYTTGRTLYHAANLFKQAGCKEIGSVSLAR
>SEQF1778_EEI64984.1 helicase C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDLENYYGRRVLASRHEVKQSGIQELPTIRIDAGNIRCYRCNHVTAKSLGALPQGEFYCPHCINLGRVSTLNKFYHVPEP
NQFTVTEPVLTWKGKLSPLQQQASEKISRGMADHVQQLLWAVTGAGKTEMMFAGIAAAIERGERIGIASPRVDVCLELFP
RLKAAFANCDIALLHGRQELPYHYAQLTICTTHQLLRFYHAFDNLIIDEVDAFPYAANASLLYATKQAIKENGGCLYLTA
TPGDALLREIKSKRLVVNYLPLRYHGHLLPQIKVRLAFGWRRRLERQQLPPQVIQQLQETLKEGHHFLLFVPHIADLALV
EAALRHSFTTFRFATVHASDLERLEKVQKMRDGDYDFLVTTSILERGVTFPEIDVYVLGADDPVFSSSALVQIAGRAGRS
QSRPTGRVIFWINCNCRQVNQAVSQVKYLNRKGQRLIDGVSFVQ
>SEQF1778_EEI64985.1 YigZ family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEPYLTIAKNTTYEQIIKKSRFICSIARVSSDEEAQQFIASIQAANKKATHNCFAYMIGDNDQIQRESDNGEPSGTAGI
PILESLKLAKIHNVVAVVTRYFGGIKLGAGGLIRAYSNTTTEAIHQAGLVQRIKQEILKITVTYALHDLLLYYLKENNLE
VASEEYGVNVETSIYVNETDLKDVKEKLINRFNDQLQITEGDQRFNEIPY
>SEQF1778_EEI64986.1 hypothetical protein HMPREF0534_1681 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKAHPYGVQGRRPIASKYKRALKEKKIEAIRKWAKEKPAEEK
>SEQF1778_EEI64987.1 hypothetical protein HMPREF0534_1682 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSVNKLNVFNVTANWNELDQECAAAELALISESINKK
>SEQF1778_EEI64988.1 hypothetical protein HMPREF0534_1683 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSYASEVKKELTGITVHRDNAKAELMALIRMNGSIGIADHQLVLNVQTENPAIARRIYSLLKQFYGVESEIVVRRKMKLK
KNNQYIVRLRYHAQHVLDDLGILQNYQIKEQVPVELLKDEWMVRSYLRGAFLAGGSVNNPETSRYHLEIYSLYEEHNEII
AQMMNKFGLNAQTTARRSGFIVYLKEAEKIADFMSLIGATNSMLQFENVRIVRDMRNSVNRLVNCENANLNKIANASTRQ
IENIEFIDSRVGLNSLPDKLREIAETRLAHQEVSLKELGELVPGGPISKSGVNHRLRKLNAYADELRASQVKQ
>SEQF1778_EEI64989.1 hypothetical protein HMPREF0534_1684 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLHKPKIVVIGGGTGLPVVLRGLRDQNVDVTAVVTVADDGGSSGILRNYINVVPPGDIRNGLVALSELPDLELDIFQYRF
KSSDQFFAGHAIGNLIISALSEMKGGIFTAVQELSEMMKINGHIYPVANEPLTLNAEFTDGTKLSGESEITAAHKQIKRV
WVTPSKDNDGHPARPVSEVITAIKNADQIVLGPGSLFTSILPNLMISEVGQAVYESKAEVVYICNIMTQKGETDNFTDAD
HVRVLNHHLGKNFINTVLVNIQPVPENYLDFQEWNEISQPVKHDFQGLRAQHCRVISSNFLRLKDNGAFHDRDKVVAELM
NRLHQVHE
>SEQF1778_EEI64990.1 hypothetical protein HMPREF0534_1685 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKEELVMVYKKLKVVIITGMSGAGKTVAVHSLEDLGYFVIDNMLPGLAERFVDVIEDSREFDKIAMVMDMRSRGFYDEV
LPNFEKLKKRADLDVKLLFLDANDVTLISRYKETRRSHPLSPQGRILDGVELERKLSTDLKSQADIVIDTTNVTPRNLKL
RLNKLFGHDEGNDFYVEVMSFGFKYGLPLDADIVMDVRFLPNPFYIPELKHLTGNDPAVQNYVVQSPLAKEFYQHLRSLL
EIALPGYIKEGKSSLTIAIGCTGGQHRSVTIANKLSADLKEKGYKVNTYHRDIEKAK
>SEQF1778_EEI64991.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMMNQQPTDELKRSLGFWSAISIVIGTIIGSGIFFKQGSVLDSAGTSTLAIAAWVFGGIITLTGGLTVAEIGAQMPYTGG
LYVYIENLYGRLLGFLAGWMQVIVYGPAIIASVAGFMSILMANFFGLGTQWRIPLAVITVIAIGVMNLFENKVGAIFSII
TTAGKMIPIAAIIIFGLFWGHQDAFGQTVTEIHQSTGGFGVAVLATLFGYDGWILIANLGGEMKNPQKLLPRAIILGITA
VLIIYTLITVGILKFLPVNTIHRLGENATAYLAVKAFGAIGGKLLSAGIIISMMGTLNGKMITFPRIVYAMARRHDLPFS
RYLAYITPKGKSPVVATMFIIILATVMMFFFDPDHLSDLCVFTVYCFYLLAFFGIFILRHKNKGPRPFSTPLYPLVPIIA
IAGGIFVLVSEVMNDPAGVILFIGIVIVGLPILYIVKRMDQRRMN
>SEQF1778_EEI64992.1 excinuclease ABC, A subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANDKIIIHGARAHNLKNIDITIPKNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGQMDKPDVDSIDG
LSPAISIDQKTTSHNPRSTVGTVTEINDFLRLLWARVGTPICPNDNIPITSQSPEQMVDRVLELPERTRLQILSPVVRDK
KGTQKKVFETIKREGFVRVQVDGETYDLDSVPELDKNKKHTVNVVIDRIIIKEGIRSRLFDSFESALRLSDGYAIADVIG
GDPIPFSEQYACPICGFTVGELEPRLFSFNAPTGACPECEGLGLKLEVDIDLVVPDRTKTLKERAIVPWNPISSQYYPQM
LEQFCKSVGIDMDTPFNKLPKKQQQQILYGNGETPFHFHYENDFGGIRDVDVPFEGVINNISRRYRETNSDFTREQMRKY
MTELPCPVCHGYRLNQRALAVKIDGRNIGEVSALSISDSLEFFKSIKLSAQKNEIAKPILKEIIDRLTFMKNVGVEYLTL
SRSARTLSGGEAQRIRLATQIGSNLSGVMYVLDEPSIGLHQRDNDRLIESLKAMRDLGNTLVVVEHDEDTMRAADYIVDI
GPGAGENGGQVMAAGTPKQIMRSRKSLTGQYLSGKKFIPVPQERRGGNGKKITITGAAENNLKDITVDFPLGEFICVTGV
SGSGKSTLVNMILKRVLAQKLNNNSAKPGKYKSISGVENIEKVINIDQSPIGRTPRSNPATYTGVFDDIRELFAQTNQAK
MRGYTKGRFSFNVKGGRCEACRGDGIIKIEMNFLPDVYVPCEVCHGTRYNSETLEVEYKGKNIAEVLNMTVSEALEFFSA
IPKIKRKLQTIEDVGLGYVHLGQPATTLSGGEAQRMKLAAELHRQSHGKSFYILDEPTTGLHMDDIKRLLAVLQRLVDAG
NTVLVIEHDLDVVKSADWLIDLGPEGGAGGGNVVATGTPEQVAEVKGSYTGKYLKEMLERDQKWAEEREAKQKK
>SEQF1778_EEI64993.1 excinuclease ABC, B subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLRFHFILFNCDVREEFLLIYRQPDKKFELVSEYKPTGDQPQAINQLTKGIEDGEKAQILLGATGTGKTFTISNVIANV
NKPTLILSHNKTLAGQLYGEMKKFFPHNAVEYFVSYYDYYQPEAYVPSSDTYIEKDASINDEIDKLRHSATTSLLERNDV
IVVASVSSIFGLGDPREYQNSVLSLRVGQEIERDRLLTELVNIQFDRNDIDFQRGRFRVRGDVVEIFPASRDERALRIEF
FGDEIDRIREVDALTGEVIGDRDHVSIFPATHFMTNEEVMDRALPQIEADMKKQVKKFTDEGKLLEAERIQQRTTYDIEM
MREMGYTNGIENYSRYMDGRKPGEPPYTLLDFFPKDFLLVVDESHQTMPQVRGMYNGDRARKQMLIDYGFRLPSALDNRP
LKLPEFEQHVNQVVYMSATPGPYEMEQTDHVAQQIIRPTGLLDPTVEVRPVMGQIDDLVGEINKRIEKNERVFVTTLTKK
MSEDLTDYLKDMGLRVKYLHSDIKTLERTQIIRDLRLGKFDVLVGINLLREGLDVPEVSLVAILDADKEGFLRNERSLIQ
TIGRAARNENGAVIMYADTVTDSMQKAMDETKRRRTIQMKYNEEHHITPHTIIKPIQEAITVTKKATDEAEADNSAEFTD
KDFAKLDKEAQAKMLDELTEQMRSAAKRLDFEQAATLRDTIMELKTKAKK
>SEQF1778_EEI64994.1 hypothetical protein HMPREF0534_1689 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTPSLFAGTFAILVLWLIVDIIWELSRPRDIVMRRLCAWLNLIAIIGGFSVFYGVTHFDNANLVPWFICLNWINVVAAGL
QFYFGYFRHN
>SEQF1778_EEI64995.1 hypothetical protein HMPREF0534_1690 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGMHEYLKSLSDLEMINRAPGYFKFEEHNVAAHSFKVTQAAQMLGDIEEQAGNEIDWRSLYEKALNHDYTERFIGDIKTP
VKYATPELRSMLARVDKLLTENFIQSEIPAEFRAAYERRFAEGKDDTLEGKILAVADKIDLMYESFGEIQKGNPEPVYMD
IYKSSLTAIMDFRDMASVQYFLKKILPELLKDNADGNAKNQLAIITTQIIQQ
>SEQF1778_EEI64996.1 hypothetical protein HMPREF0534_1691, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
VFIYDIGDVTKIKFFLTFLEISPKNCMIVQINYFLGGLHRGNA
>SEQF1778_EEI64997.1 exonuclease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMNFIAMDFETANGKRYSACSLALTIVRNGQIADEFYTLINPHTKFFWRNTQIHGIHERDVQNAPDFPEVWEHINQFYTP
DKLVIAHNNRFDNSVLRNTLEHYNIEVPAYQTLDTVASSRQLIPGLTNYKLNTVCDALNIDLHHHHNALDDAQACANILL
YQSKHFTPQQIQPFINLIG
>SEQF1778_EEI64998.1 hypothetical protein HMPREF0534_1664 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTDINLKGGKLSIEQLNTIFETIPVEFDFIDENDIIRWSSANRHRLFKRTDADLGKHVLEVHPGHSQGHVKQVLHDMHTG
DRDSISIMIKHHGQPVNIAFYALRDDQNKYLGCVEVTQDVSKQQTKGSFWRNIMQVLHKK
>SEQF1778_EEI64999.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADDISIKLATSEDAGAVLQFLRATATESDAVLVPHLNEISEKTEAKNIDLINQFDDCVILLAMLGEEIVGMVTVMVLDH
QPTTGELGVVVRKKYWRNGIGRLLVDEAEYWFNTYSSLENLILTVFEDNIPAINLYQQLHFVTIGKTVEQGRNVLQMQYD
NKKEETMEK
>SEQF1778_EEI65000.1 hydrolase, P-loop family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MESLTLTNRDATIALGKKIGQQLVAGDVLVLDGDLGAGKTTFTKGLAAGLEIPDIIKSPTFTIIHEYQDGRLPLYHMDAY
RLENGGAEDLGLEEYFDGDGVSVVEWAEFVEDELPADFLAIHFKRTGDDNTRILEFEPHGQHFDQIVKSVVKQWQTTFR
>SEQF1778_EEI65001.1 phosphate acetyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELFDEIAAKIKGQNKTIVFPEGEDKRILGAAVRLKKDNLVEPILLGDEEAIKEVASKNGFDLAGLQIIDPATYPEDDKQ
AMFDSLMKRRKGKNTPEEIQKMLEDVSYFGTMLVYMGKADGMVSGAVHSTGATVRPALQIIKTKPGAHRISGAFLMIKGD
QRYIFADCAINIELDVPTMAEVAIQSAETARLFEIDPKVALLSFSTKGSAKGEMVTKVADAAKLVHELDPDLPADGELQF
DAAVVPSVGELKAPDSKVAGHANVFIFPSLEAGNIGYKIAQRFGGFTAVGPILQGLNAPIADLSRGCSEDDAYKVAMITA
AQAL
>SEQF1778_EEI65002.1 uracil-DNA glycosylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMMFNYAKIIGEVLIIVKQLIHNDWWEVLKPQFESAYYAQLHNFLKEEYTHQTIYPEMHHIFEAFEWTPFSKVKVVILGQ
DPYHGPNQAHGCSFSVLPGVPVPPSLQNIYKELQSDLGCIPVNHGYLKKWADQGVLLLNSVLTVRAGQAYSHRGHGWEQL
TDAAIHALSERPKPVVFILWGRAARNKKQLINTKTNIVLESAHPSPLSANRGFFGSRPFSKTNEALQAMGEQPIDWQLPA
KPNYR
>SEQF1778_EEI65003.1 hypothetical protein HMPREF0534_1669 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRQLYIRDRSSDLHGTTVIRDKNGESCYLLVGKWGMRYDALSLYAIDGALLAEVKQLTLGLLPKFALYVNRQRVGTIGKG
LGFVQQVIYIRGINWIVVGSPLTSRYRVFSGSHLVFSIQPVKLSSGYCHELKINKKEDEPLAILIASILNHWARRSEQEP
LLARLMKRSPNLNTSMSFSISNQLNLNCKERRNK
>SEQF1778_EEI65004.1 SsrA-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKSHQENNDNLIAQNKKARHDYFVTDTVEAGLVLTGTEIKSVRAHRVNLKDGFAQVRNGEAWLMNVHISEYDNGTYFN
QDPLRNRKLLLHKKEINKLVGALQDKGVTLIPLKMYIKHGYAKVLLGLAKGKHQYDKREAIKRREQNREIERVMKHY
>SEQF1778_EEI65005.1 ribonuclease R [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTNNLKEKILTHLTDNAGVSYSAEKLAHQLGMDDAEQFTPIVQSLAQLEREKKVQVTDHGEFEAVIKQQPLIGTFHGND
KGFGFVDYDPDLPDMYINPDHTLHALNGDQVEVKVLRPAKAGSDQGPEGQVTRIVEHKYENVVGEFKQATIGDDYIGEIL
LKDKKLSQYHFYVTDKGLKPLDGQVVTATVETYPSDEAPEVMTGAVTEVIGDKDEPGIDIMSVIYAHDVPHEFPKEVMEQ
ANKIPLHVLPEEKKGRVDITDQPLVTIDAIESKDLDDAVVAWKMDNGHYHLGVHIADVTHYVKPGTPLDQEAFKRGTSVY
LTDRVVPMLPKRLSNGICSLNPNEERLAMSCEMEIDEQGKIVNHRIFQSVMKSHARMTYKAVNKILESHDAKTMRQYEDL
IPMFETMGEIHKLLLKNRKKRGAIDFEAPEAKIIVDEKGHPTDIQLRDRGLSERMIESFMLAANETVAEHYFKEHVPFLY
RIHETPDGERIKSFVDFLAVFGIEVHGDSKNVKPGMLQKVLKDVAGTPEEQMVQVMMLRSMQQAKYSDEELGHFGLGAKY
YTHFTSPIRRYPDDTVHRLIKWYEEHGKNEPAKDHWRDKLPEIAEHTSVTERRGIDTERDVDSMKKAEYMEDHVGETFDA
VVSSVMKFGLFVELPNTVEGLVHISVMNDDYYEYSEKHMALIGRNSHRIFQMGQPIKVKLVRADKDLREVDFEIVNPEEA
PKTKIRVPRNDEYRGRGRGRKGRANNNSRHENTSSNHYRNTQGKWRRTHQENGRQNNRQINRGQTRHHNNSRDHEGVRRH
H
>SEQF1778_EEI65006.1 hypothetical protein HMPREF0534_1672 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLHAYTGNTNDVRMLGRQLNWQGYTVFAPLLHGHGGDPQKVLESNGPDDWWDDTRMAIFRLRDAGVDQIAIFGLSLGGLL
ATRALENDPQLLGGGVFASPITTWGQSNVPEYFPKIAAKYYRQQKINPLITKEKVAKLTERLPQQLAQIQTMAHQICDQL
DQIHQPFFIAQGGADEMIDPASGLQLKTKLQENGVAVDYHYYPTATHLLTVNTAHRQLFADVEKYLQNLFEVSSNDNK
>SEQF1778_EEI65007.1 preprotein translocase, SecG subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYNTLMTLFLIDCVVLIACVMMQPAKNDNDAMSALTGGAGDLFSRRKARGFEAVMQIVTTICGALFFILALAMIYVSSH
>SEQF1778_EEI65008.1 chloride transporter, ClC family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MESRKEVFHRYNQFNQLIRAIIIGILTGLVVSVFRLIIQHFLQLVTASFAYFHSHPLWLIPWTIGSIILALLLGWLAQSY
PDIKGSGIPQVEGQLTNQFDEKWWPVLWRKFLGGIFAIGSGLYLGREGPSIQLGATIGQGVEEKAKVGHLNRQIGIASGA
AAGLSAAFNAPIAATIFILEEVYHNFSPVIWLATFVSSLCSNIISMQFFGLRPVLNVPYNHMLPNNLYWHLIALGILLGI
LGRLYQIVILHLNGWTARIPKLSPIAYPIIPFLLVIPIAWYFPITLGGGNELIIILRSLPFSLALFVGLFVLRFVFSMIS
YGSQLPGGIFLPILTLGAILGAVYCALMVRLGLMPVRYLPNFIIYGMAGYFACISKAPFTAILLITEMVGSLAHLMPLAL
VAVVAYLVVDALHGEPVYTAMFNAFIGNNPQPARHKEDVTMSITIYAGAQLDGCKIKDFPWPTDCIVMVVYRGEEKIIPN
GQTKLQAGDTLILRANSATTRQAYHEISRAAHYAQG
>SEQF1778_EEI65009.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIHMKKSAPELNRSMTAGQMEMISLGGAIGVGLFMGSTSTIKWTGPSVILAYAFVGLILYIVMRALGEMIYINPGTGSFA
DYATEYVHPVAGYLAKWANVFEYIVVGMSEVVAATEYLKYWWPHLHTWVAGIVIIIFLVLANLASAKAYGSLEFWFAMIK
VITIIFMILLGFMIIFFGFGNGGHPTGFSNLWSHGGFFTGGWSGFFFSMSIIVGSYEGIELLGISAGEVANPQKAIVKSV
KSVLFRILIFYVGAIFVIVTIYPWNELSSVGSPFVSTFAKVGITAAASIINFVVLTAALSGANSGIYSSSRMLFKLSHEG
DAPKIFGRLSKRIVPDAAILGISGGILIGFIIDMISATYSHSTADMFVVVFSSSVLPGMIPWFVILLAELRFRRNNKDLM
VDHPFKLPLYPFSNYFAFLMLIVIVIFMFINPDTRISVIVGAAVLILAVTVYLVRHGFKNEKA
>SEQF1778_EEI65010.1 phosphopyruvate hydratase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLSGIAFQINDRGEIHQMSLITDIYAREVLDSRGNPTVEAEVYTEAGGVGRGIVPSGASTGEHEAVELRDGDKNRFGGKG
VLKAVSNVNNIIAKEIVGMEVTDQIAIDKAMIKLDGTPNKGKLGANAILAVSLAAARAAADELQVPLYNYLGGFNAHVLP
TPMMNVINGGAHSDNKVDFQEFMIMPVGAPTVREAIRWGSETFHALKKELEAAGKVTSVGDEGGFAPDFANNEEPFEYLI
KAIEDAGYKPGKDIAIAFDVAASELWNDEDKKYKLRWSTGEEYTTEEWINYLSGIIEKYPVVSVEDPIDENNWDDWVTIT
DKLGKKVQLVGDDFFVTNTDYLKKGIQMGAANSILIKLNQIGTLTETVEAIEMAKEAGYTAIVSHRSGETEDTTIADLVV
ATNAGQIKTGSMSRTDRLAKYNQLMRIEDQLGDVAQYKGIHSFYNLSQQARQDIENR
>SEQF1778_EEI65011.1 triose-phosphate isomerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVPIIAGNWKMHKDVQEAVSFIEKIKNQLPPADQLETAIAAPTLCLVPMVKAAKESPLKIMAENCYYKNEGAYTGETSP
YALYQAGIHHVILGHSERRTYFNETDELINKKVKAALVNGLCPIVCCDDTMRRRVAGKKVHWVVSRILADLHGLTNDEIC
HVTVAYEPSWAIGTGESADPEQAAEGCYLIRQTISDMYGDEVANNVRILYGGSVTTSNINALMAKNDIDGVLVGAASLNP
ETFLQLVHH
>SEQF1778_EEI65012.1 phosphoglycerate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKLTVEDLPLEGKKVLMRVDFNVPIKDGVVGDDNRIVAALPTIKYVIDHGGRAILFSHLGRIKKEEDKPGLSLRPVAER
LSNLLNKPVTFVPVTEGKQLEDAIDNMKNGDVLLVQNTRYEDVKDGEYVKRESGNDPELGKYWASLGDVFVNDAFGTAHR
KHASNVGIATNMSGKAAAGYLMEKEIKFLGDAVDNPERPFVAILGGAKVSDKIGVIDNLLDKADKIIIGGGMAYTFYAAK
GIKVGNSLVEKDKIDVAKQILDKAGDKLVLPIDNVVADKFNNDADTKVVEGDIDDGWMALDIGPKSVEEFKNVLKDAKTV
VWNGPMGVFEMPNFAKGTLEIGKFLGTLTDATTIVGGGDSTAAVKELGVADKLTHISTGGGASLTYLEGKELPGIAAISD
K
>SEQF1778_EEI65013.1 glyceraldehyde-3-phosphate dehydrogenase, type I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFFPKGGICSMTVKIGINGFGRIGRLAFRRIHELNTNDIEVVAINDLTTPSMLAYLLKYDSTHGKFPGEVTSTDTGIVVD
GKEYPVYAERDARNIPWVKNDGVDFVLECTGFYTSAEKSQAHIDAGAKRVLISAPAGNIPTVVPGVNLDTLTKDDIIVSA
GSCTTSCLAPMAKVLNDEFGVKVGTMTTIHAFTSTQAILDGPRGKKMRNNRTASVNTIPHSSGAAKAIGLVIPELNGKLS
GHAQRVGVVDGSLTELVSILDKKVTVDQINDAMKKATNPAFGYTEDEIVSTDIIGSTYGSVFDPSQTEIMEGDDGSQLVK
TVAWYDNEYGFTSNMIRTLLHFATL
>SEQF1778_EEI65014.1 ATP-dependent Clp endopeptidase, proteolytic subunit ClpP [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLVPTVIEQSSRGERAYDIYSRLLKDRIIMLSGPIEDEMANSIVAQLLFLDAQDSTKDIYLYINSPGGVVTSGMAIYDT
MNFIKADVQTIVIGMAASMASVLVSSGAKGKRFGLPHSQVLIHQPSGGAQGQQTEIEIAATEILKTRKMLNGILAKNSGQ
PIEKIQADTERDHYLTAQEAVDYGLLDGVMENNSKLK
>SEQF1778_EEI65015.1 Cof-like hydrolase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKMVALDLDNTLLNSNKEISQRNEHVLKQLHQEGIKVVLCTGRPINAIWPYIEQLGLTDSDDYTVTFNGGLVINNESRE
HLFELGMKKSDLLPLFSYVKRKKIPLNVLDFERVYELNDYPGSIYRTVLKNIEFQSLPMSDVPEKTYSKAVMAITPEKLS
TIIGELPADLKAQYHAVQSQPMIMEFLPKKLNKAVGLKALLDHFGDDFSNLMTFGDADNDLEMIEAAAQGIVMENGLPNV
KAVATAITDTN
>SEQF1778_EEI65016.1 transcriptional regulator, MarR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTHEDQLLDKAINIYLTGLKGIESFISEPASEYNLSFEQFLILRKIINHPNIKLMDIAEQRQVTRSAVSRQLKVLFQQKY
VEQKADPADRRRMFLVATKKGKDAESEIWQRINHRFANWVQIYGEDRADQFLTLFEDFNQQIIQGNIRKKE
>SEQF1778_EEI65017.1 acyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKPNFNPSQGMKSHYFVTGIDGLRTLAVLGVIIYHLLPNVLMGGYLGVPLFLLVSGYFVTYQFSRQLKYGSHINLGHFYL
KRFRRLYPTLIAMLILTTAYITLFARELLHNIRAVIVTNLTWIYNWWEISHGQSYFDQFGGVSPFTHLWTLGVEAQFYLL
WPLIITLLFAVFKKLQNVRRVVFILAVLSAIEMALLYDPANINRVYYGTDTRAFSLLLGSWLGLAWPLNRLRPNLQANSR
RLLNIIGIIATVLTIVGFFSLNGQSAFTYRGGMFLYSFIGMILMATIIHPGAGMNKWFTNPVFHWVGQRSYGIYVYQYPV
MVFYERVIKVGNHPLLNALVEIIIILVVSEVSYRLIERPFAQYQWSKLPADLQHVLETHHFSWQSGAKMMVSALVVVIAF
IGLCQPNRAPKKTAVQQRIEQNHQAAEEHNKKIAKGDNVAEASGNTSKLQKQYDLTPAQIKAAQKLKVTAIGDSVMADAA
DSIQKLMPNTYVDAQVGRQGSATPDVIKQLKTDGHLNKIVVLNLGTNGPMTQDTLDDILSTIGSGHQIYWVTAHVPTKPW
QQTVNNEIKDLAKKHKNIHVVDWNKASQGHSDWFASDNVHMGPSGNDHFARLIAKEILTKK
>SEQF1778_EEI65018.1 hypothetical protein HMPREF0534_1654 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEEQHETLTLIEEITRNDGSKYYEIGNMVQNGRAELAAERNFIKEVRILELNIPHSKNVIKYEHFINTHYKMQTEAMDHW
EEWKRPPEIEEVVQTILKENHIG
>SEQF1778_EEI65019.1 glutamine-fructose-6-phosphate transaminase (isomerizing) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MCGIVGVTGTDKSLSILIDGLKRLEYRGYDSAGVYVNDQQGHDYLVKRPGRIANLEAALGEEVHGLAGIGHTRWATHGEP
NEANAHPQYSQDERFYLVHNGVIENYADLKKEYLSDVKFVSQTDTEVIVQLVDKFVVESVMSTEAALLKVLRLISPDSSY
AFVLMDKEQPDTLFVAKNKSPLLVGIADGYNMVGSDAMSMIKETNTFMEIGDHELVIVKPDHVTVKDFDGNEIDRPTFKV
DMDANAADKGAYPYYMLKEIDEQPAVMRKLVQEYFGDNDVAQINEEMLKDMADADHLYIVGAGTSYHAGLVGARIFEKLC
GIPTSVHISSEFAYEQPLLSKKPFFIFLSQSGETADSREVLVNVNKHNWPSLTITNVDKSTLSREATYTELLYAGPEIAV
ASTKAYTAQIAVEAILAQALGVYMDKQAAKDFDVKHQLGLVANGMQSITDSKKKVEEIASRYLSKSPSAFYVGRGMDWSV
SLEAALKLKEISYVQAEGFASGELKHGTIALIEDQTPVIGIITQDRTAGLTRSNLEETQARGANAITIVSRHLAKEDDTF
VLPDVDEVLTPLLSVIPAQLLAYYTSLGKGLDVDKPRNLAKSVTVQ
>SEQF1778_EEI65020.1 phosphoglucosamine mutase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLKYFGTDGVRGVANQDLSPELAFRVGRAGGYVLTRHSERKQPQVLVARDTRISGEMLENALIAGLLSVGIEVLRLGVV
TTPGVAYLVRAQEADAGVMITASHNPIKYNGIKYFGGNGFKLSDELEYEIEQLLDAEEDTLPRPSDAGLGTVADYHEGAL
KYTSFLEQTVSSDLEGLKVVVDAANGATSGFISNLFADMNVDFIPINDQPDGLNTNLNCGSTHPESLQKAVVENNADLGV
AFDGDGDRCIAVDNEGNIVDGDKIMYICGKYMDKKGLLKKDTVVTTVMSNLGMYKALEAHNLKSVKTKVGDRYVVEEMLK
NGYNLGGEQSGHIIFLDHNTTGDGMLTALQLLSVVKDSGKTLAELANDVTTYPQELLNIKVADKTTAMENQKLKEIIAQV
EKEMNGDGRVLVRPSGTEPLLRIMAEAATPELVHEYVERIGDVARAELEVE
>SEQF1778_EEI65021.1 YbbR-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKDTKGFFRRKWFLRIISLILALFLFMYVNGSKSGFLRQNTRNNNQSSALMSNKSVTLRMPLDVTIDNNKYIVSGYPQY
VKVKVTGPSALVTTTSNTQNFKVYADLSDLTPGKHRVKLKTSGLNSELTSKIEPQYINVNIQPRKTITMKVTIRLSTRDL
DNGYKLGRPHSDIQTVQVTGSRDEVNKVNRIVAFVAIPHDAKDNIARQVTLQAIDRNGQTLNVVISPTTTNVSIPISAGS
QSSSSNDSSSSSSGSEESEEAKSNSRATSRNDSSDSSSETSQSSSSISNKDSSSSSRNQ
>SEQF1778_EEI65022.1 TIGR00159 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVNAMQFIISLLTWQNLIHLIDILVIWFLIYELLMLIRGTRAVQLFRGILIIILVKIVSWYVGLSTVSWVMDQIINWGVI
AIVIIFQPEIRRGLEHLGRGTFFTHNQTANEKEEDMIKQLDQAIQYMSKRRIGALMSIQMKTGLEEYIETGIPLDADISG
ALLINTFIPNTPLHDGAVIIKNNRIAVAAAYLPLSDSKLIPKELGTRHRAAVGISEVTDALTIVISEETGEVSITKDNEL
IRNMSRDEYLKFLRAQLYTHEPQHENLVTELYAKFQRKGGGRHGQGH
>SEQF1778_EEI65023.1 L-fucose:H+ symporter permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENEVKKENGQSWVQLSDGYLSRTPMFQFVILCLIFPLWGAAASLNDILITQFKTVFTLNDTATAFVQSAFYGGYFLMAI
PASILIKKTSYKLAILIGLLFYIIGCGMFFPASHVATYSMFLVAIFAIAIGLSFLETSCDTYATMFGPKETANKRLNVAN
VLIPLGDIMGIVLGKYLIFGEGGNIADKVAKMSKSEAEAYNEHLLQLTLQPYKYILIVLIIIFIVLAVTKMPRAKAFSTG
SETKEDQPSLGETFNYLFHNKRYMKGVLCQFIYAGMQTTVWSFTIRLALRLDSHISDAAASTFMIYSYIAWFFGKLVANW
FLDRYSITKVLTWFSLLGTISLVITFTVPNITAVIAAIATSFFFGPEWPTIYAHTLDQIHEKKYTETGGAFIVMSLIGGA
IVPTIQGRVSDLTGSMQLSFIVPAICFALITIYFWTEHRWEKAHPNEVQEH
>SEQF1778_EEI65024.1 RbsD/FucU transport family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKKGIINSEVSAVVANMGHMDWLSIGDAGMPVPFGTKKIDLAVDKELPSFMDVLNNVLKEMKVQKIYLAEEIKDQNPEQ
LENIKKALPDVEVAFMPHSELKKSLAKTHAFIRTGEMTPYSNIILESGVTF
>SEQF1778_EEI65025.1 ribokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIGYLSLIFEKIHKVRSIFMSNNVVVLGSINVDTTYHVDRFPQPGETISAVSKSSAPGGKGANQAVAAARSGAKTAFIGA
VGSDKEGAYMLESLADDHIDTRHIMTDKLHGTGSAAITLDANGQNDIMVYGGANQAMTTDVLAGIDDVLEDADFLISQFE
TPQEVALDAFKQAKKYGVTTLLNPAPAHEILPELLKYTDVITPNESECALLTGIEITDEESMLKSADYFRERGVKHLLIT
LGSKGVFYSTPTAHGLVPAFKVKAVDTTAAGDTFLGALSSQLEKDLSNVDKALVYAQRASSLTVQQMGAMPSIPNHDAVI
KALA
>SEQF1778_EEI65026.1 UDP-N-acetylmuramate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANLMNEFPDIEIKQDEPLMNYTYTKTGGPADWLAFPETIDQVKKLVDYVREHKMGLTVLGNASNLIVGDGGIDDLTIIL
TRLNKIEVHDNKVTAQAGASYIATTEAARDSELTGLEFAAGIPGSIGGAVFMNAGAYGGETKNVVSEATVMLPDGTIKHF
TNEELDFGYRHSSIQDNNGVVLDATFALEPGKYDDIKARMDDLNERREAKQPLDLPSCGSVFKRPEGYYAGKLIHDAGLQ
GYTSGGAQVSTKHAGFIVNIDHGTAADYVNVIHHVQKTVKEKFGVDLETEVRIIGRQD
>SEQF1778_EEI65027.1 hypothetical protein HMPREF0534_1644, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKEELIEHRDRIKDHLVVWIVLTICLQILTVFHILAFLKYVVWLSAAYSISLIILWCYLEFKLL
>SEQF1778_EEI65028.1 glucose-6-phosphate isomerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTHIKFDSSALKQFVYENELGEMQAMVNAANDELRNGTGAGADFRDWLHLPTEYDKEEFARIKKAADKIQRDSDVLVVIG
IGGSYLGAQMAIDFLHNTFYQAQKAKDRKAPLVVFAGNSLSSTYVHDLIQLIGDKDFSINVVSKSGTTTEPSIAFRIFKD
LLIKKYGENEANKRIYATTDKAKGALKTEADAHGYETFVIPDGVGGRYSVLSAVGLLPIAASGADIDKLMEGAAQAEKDY
VDPDLTKNEAYQYAAYRNILYRKGYETELLENYEPNMRMFAEWWKQLAGESEGKDQKGIYPSSANFTTDLHSLGQYIQEG
RRFLMETVVKLDKPNYDMEIPTEPDNLDGLGYLEGKTMDYVNTKAYEAVVAAHTDGGVPVMTVHIPQEDEYTLGYLIYFF
EVAMGISGYLNGINPFNQPGVEAYKSNMFGLLGKPGYEEIGKELRAKMDKND
>SEQF1778_EEI65029.1 bacterial transferase hexapeptide repeat protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKNTENMLAGKPYRPGTPELNKFSHLAHRLCRDYNLTTDEDTVERGMIIDRLFPQHADGIYLQGPIHIDYGRFTKIGKN
FYANFNFTILDTCPVTIGNNVMCGPNVSIITAMHPLMYQQRNIRQQADGQFDDVEYGKQVTIGDNCWLASNVTVCPGVTI
GNGCVIGAGTVVTKDIPDNSLVLGVPGKVIRPITEKDRLGNFPY
>SEQF1778_EEI65030.1 sugar transport protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIHLYLVIILRIDRREFFMNYLLALIPAIGWGIMPLITGKIGGSTINQMFGIGAGATIVGLVAFIIGHPTVTTTGFWFSV
LCGALWTIGQIGQFVSFKRMGVSNTIPLSTVLQLVGNSLIGVIIFGEWRGARTLTIGFIALAIVIVGALMTSVTDQSSGK
KITVQNFLFLLITSIGYWVYSAFPKMPMIANDSSLGIFLPEMLGILLGSVIYAICSGNIDSFKQKKQYLNIWGGISWGIA
ALAYIFAGRALGINTAFVFTQMNVIIATIGGILVLHEHKTRREMSFTIAGIIFIVAGSILTIFA
>SEQF1778_EEI65031.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLMYRLMLSFFAIILTLMVIVSISFINVTNNTMYHNTWQQLKSYSDSLIQDSIRYNMATQSFEGFATESLNSNANLLTR
QNVHFAIYDTTHRKIFASNGFAPSMSKNDWKKLKKGETVCTKLITPKINSRVSKGVSPRMTEVSRPYFYKGKMIAVVSIA
TFVSTIEQNMHQIKINLIMALLTASLVTLAVSYFLARSITKRIDRLRMATHQIAQGNYNVEVDDNGRDEVADLGRSFNQM
TASLRESQQEIRWQEERRRQFMANAAHEMRTPLTTINGILEGLQYDAIPEEDKKHSIQLMQNDTRRLIRLVNDNLDYEKI
RTNQIAMERKVFDASAVLENLREQLAKKAKEKKDTLHLDVEKNLRVYADYDRFVQIMFNIIQNAIQFTDNGIIDIRGKRV
EKGSQFVVQDNGIGMTPEQLENIWERYYKADRSRMNTKYGESGLGLAIVRQLVLLHGGKIDVKSQYGKGTTFTIFFPDRE
YAPHNIQPTNNKDKK
>SEQF1778_EEI65032.1 response regulator receiver domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEILMIEDNHSVCEMMAMFFKKEKWHYEFAYDGVEAEEKFNADPHKWDIILLDLNLPKKDGMQVAADIRRVSPTVPLIML
TARDTESDQVLGLEIGADDYVTKPFSTITLIARIKALYRRTHLNKLEDVQDTDSDDTFDIQTKNFKMNTKTREVFLYGKP
VGDLTPKEFDLLKTLASKPRQVFTRSQLLQLVWDYEYYGDERTVDAHIKKLRQKLENIGPQVIKTVWGVGYKFDDEGND
>SEQF1778_EEI65033.1 LysM domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISKKNFAKVSATLGAVALGVSATATAANADTIYTVQSGDTLSGISYKFAKDNSMVNDLAKKNNIQDINKIYVGQKLIIK
SDGEIQEYNAQNAANANVANNNTQATQQQAAQAQSQASQSYTSNASGSEAAAKAWIAARESGGNYGATNGQYIGKYQLSA
SYLNGDYSAANQERVADQYVASRYGSWQNAQAHWQANGWY
>SEQF1778_EEI65034.1 hypothetical protein HMPREF0534_1628 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPTVETDRLADEGYVIVNNELPQNARLIAEDSDQEKEYKVIISKQDLQTQQITVFYVNVPDNRLPIVKPSSGRIIDNRTQ
RLNVTEGQTYSNELWNFEDDGYELFKADKGALKDKYFAGSLEQQYYVYLTHQTTPLKKEHHVTRTIQITMPDKTQQVVTQ
EAIATRFGVHDEVLDSDIWQEWSKGVIPEYIPAPIAGYDASAIPAEQVDENASDRNEKISYTPQPAKILVKFIDQTGAEL
TSEELTGVTGEEFNYDPTPQIKSFEDEGYVLDENSFPADHHFTAGEQTYTITLQKLVAVTPHGNSEAESTIEQIKSNDDD
KNGNKKEIFAAFKGYFK
>SEQF1778_EEI65035.1 hypothetical protein HMPREF0534_1629 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLGEKSASSVASLNRTPLLEKMLKAVPNFAAQQQKLNGQEPVIKNNPALGEYQLIDDLGGLMHGTYLQATNSESQDKDR
SLVSRNSMSETASLVNYRAAADFSGYGHLKNNTETTKSVEVVYTLPTFEGKQGTAQIVLDGARINEFDGLEYKDEKGNVI
PRFDITYSYQGHEGEYSTIDTLKQRDDFSWEKVTAIMVFGSLLPNSSYRVEFPFKITNLENINTQEQFNLNEYAFYDLTV
NKHTTSQLNFRLSTPVFAHDAYQNIPFMALSRTEDGDEVFSEDVQAMMPTLGEVPYAISNFNDEVSFEIDEDNVMWQGGQ
YFFKLAAIQGAIQEKGFSVNVDKTGRKLMEASAFMVQPTYLDFESFDFIPYVVIHQLLITKSFTLKAEAKDDWNSFGGIE
KVCGLSATNEELPVSPEQIFIVDDSELVDATPGDYNVIIGYFLNGSEDNDMLITSPAKVRMVENKQTINVYYVDLVNIPD
KTKDDLQPSDGKILENQTQTFTGQGDEAYHNKLWGEENGFEIYEYDQGAKLGTYVGGQPAKDYYVYLIHKIEKIDEDHQV
TRTITFNMPDGSK
>SEQF1778_EEI65036.1 hypothetical protein HMPREF0534_1630 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVMNLMIVLAVIAIIILAAQYFSQLRKNRNGNNFVSGGRVFFNWTLVAVLVICVGGIIFGSIHSHRQEAKPAQTDKTEN
VEYADSDSDDLGKVSIQFDRKVTLNDNGEAKVKFKVSPQTTLTIRGHKSKEIVKTFKASKGESLVNHTYTFDVAGTYDII
AERGDQKVTKQLKVKENDNAQESSSSSSSVSSSSSSVASSVSSTVSSSSSSTASTAQSNSESSSSTTAASSNNGGTSRSY
NTSRPRYSGNGGGNRTSGSSTPTAPAQEPSTPAYSQENNGYVSDGPQY
>SEQF1778_EEI65037.1 hypothetical protein HMPREF0534_1631 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIDNVSSAQFDMIVLAEMLVIILSMVVPSIVFRFILDHDMSSKETGKQIQRLRQEMVKEGLRAVEKIYLPENIRESVVY
DSRDQKSANSFADFWHQWAKASRYPEFNEQEKELEQRALLWAFRAERQYLNMVSQKENRRDYLFELYNEILLAESILLDT
ENEY
>SEQF1778_EEI65038.1 transporter, CPA2 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLVSTIVLTVAAVLSSIISSFFPHFSINYISIFVGLIIGLVPFFNSRVAPFHTEVFMYIVAPLIYFKGQSTRINLIGKRL
RQIFETAVLLVIVGTIFAGFTVSLLEIPLALAFLMGALSTPTDATATESVSEGLIVPERQENLLKMELLFNDASGIILVT
AMALWVKNGQFNYQQTFFDFLRSAGGGIIIGILAALVMISFRQFLGRINHDAYNAQILLFVSTPFFIYFIAEELEVSGII
AVVCAGLMQNSESVRSRFITPRQFYNGLVLLKLIRELLNNTVFVILGVLVVRIIRDDLIIGNTNSQWIVIGILLYLTNLL
VRYFYGLLSKMGNKGSIIFALGESMEQ
>SEQF1778_EEI65039.1 hypothetical protein HMPREF0534_1633 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASNSDSIYYVLTKLKHHPELIKSIRPRYTNTVMVLFDDSLKIADASFYFPVDRFMVNRLSNDFVAKNGDLLDSYFSMTN
GTKKNYHDVWATTCHIPEEKVYLLELSFE
>SEQF1778_EEI65040.1 hypothetical protein HMPREF0534_1634 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAAAFLVHTRLSWGKTCDYLIANDVEPGLMHRYETREDWQGVILDALINVPLAPYLPSGQPIPPIGTAKVIGVEAVDPSQ
VKKNVQRTRSQFIMATIWKKQSALKNYNFLHHDYDKWTQKQIWADIDYWCNSKKHPIIDLITKWRCTRQHQRLRAEEK
>SEQF1778_EEI65041.1 copper-exporting ATPase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLTNIQRFWISFVLSIPMLIQMLAMPFHWMMPAYNWIALITTTIIMAISAFPYWKSAIAAFKKHSANMNTLVATGTAVT
YFYSIFAMITDRAVYFESAAFVTVFVLLGDAMEEKMHNNASNALGKLMGLQANDAEVLKDGKFVKVPLDQVQVGDLIRVK
PGEKVPVDGTILEGVTSLDESMVTGESMPVMKKVGDTVVGSTINNNGTITFKATKVGADTMLAQIVDLVKKAQTSHAPIQ
NLTDKISNVFVPAVMIIAILTFMIWYSFVGATFVQALLFAVSVIVIACPCALGLATPTALMVGTARSAKMGVLIKNGEVL
QEVSNIDTVVFDKTGTITVGKPVVTDIVGDAKKVLTIAASLEESSEHPLASAILQKAKNKEISPVKVDKFEAIEGKGVRA
DYNGQVAFVGSNRLLVDVNISREMASRAEKLQNEAKTVVYVGLDGEIIGLVAIQDVPKSSSKDAIAELKARGLMTVMLTG
DNKRVAQAIADEVGIDRVIAEVMPNDKAQQIKELQDKGKKVAFVGDGINDAPALSTADVGIAMGSGTDIAIDSGGIVLVQ
NDLRGVVRALDTSKKTFNRIKLNLFWALIYNVIGIPIAAGLFAFVGFTLSPELAGLAMAFSSVSVVSSSLLLNKTKIAGD
HVVQA
>SEQF1778_EEI65042.1 hypothetical protein HMPREF0534_1636 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEILRIAVIIIALLLIAFIVWWFFGKHTESAGKSTIVNDEQTATIVVNGGYSPSTVTLKKGIPAQVNFDMHDSTACLSHV
VFEQLGVNKDLTKQKITTINIPTDKAQTFNFACGMDMFHGKVIVK
>SEQF1778_EEI65043.1 Matrixin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTQSWLHRITGKEVATPTKQNADQQTGAQDTPADARWEQNSATIYVNISNPVLKNATDTAIAQWNNTKSFTFKIVNDKN
ANISVSAVNDPNNGAAGLTNTSMNSVTGYYLHATVELNSYYLLNPAFGYSQERIVNTAEHELGHAIGLQHTNKISVMQPA
GSYYPIQSRDIEAVKALYSRTPQPIIAENNSNR
>SEQF1778_EEI65044.1 putative membrane protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNKKVLGTAMIITACTFWGISGLFAKALFNVSSSITSMWLTQVRMVSAGIILVLLSQIRGEHPFQIFKALHSAWIIFAY
GVFGLVPVQYAYFMAVQYGNASIATILQFIGPFFIIAYQAVFRHLPPRRIEIISAIIAFLGVFIIVTHGQFNHLAMTLSV
LIWGLISAIGVATNTLIPQNMLRKGRVPSLIITGWGLLFAGLTLVLIHPSQPHIPNVPSVWLYVLGILVIGTLIPFQLAN
NSLKYINATTFSLMDAFEPLSATIGSVLIFHLQMTGADILGSILVIVAVLAINIRIPHKKIKE
>SEQF1778_EEI65045.1 carbamate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKVVVALGGNALGKSPEEQLKLVKNTASSLIGLIAAGNQVVISHGNGPQVGAINLGMNFAAEHGKTAAFPFPECGAMSQ
GYIGYHLQQSLENELHRRWMNKSVATIVTQIAVDPNDPAFENPSKPVGDFYTKKQADEIAKEKGYTFKEDAGRGYRQVVP
SPLPMKIMELDSIKTLIDADKLVIAGGGGGVPVIITDKGLEGVPAVIDKDRSSALLADKIDADKLIILTAVDHVYVNYGK
PDEKALKTLNVAEAQKYMKEGQFAAGSMLPKIEACLSFVEGHPEREALITSLDGLDDALAGKVGTVIRDN
>SEQF1778_EEI65046.1 ornithine carbamoyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAFNLRNRSFLTLADFNTREMEYMLDLAEDLKKAKYAGYEGKNLEGKNIALIFEKSSTRTRCSFEVGAKDEGAHVTYLGP
SGSHIGHKESVKDTARVLGGMFDGIEYRGFSQRNVEILAKYSGVPVWNGLTDEDHPTQVLADFLTAHEVLKKPYKDIKFA
FVGDGQDNVSNALMLGAAVMGMEYHVVTPKELEPTKETLDKANEIAAKTGAKIVVTNDIKEGVKGMDVIYADVWVSMGES
DDMWEKRINLLKPYQVTMDVMKATENPNVLFEHCLPAFHNLDTEVGKEIEKKFGLKEMEVTDEVFESEHSVVFREAENRM
HTIKAVMVATLGEQN
>SEQF1778_EEI65047.1 YcbB domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFYILDNDSKIIHLLSNIIENDFNNTVVGTTSNPQQAYDDAMRLGIDIMFIDYAMPAMDGVQLIQKIQDSHHYPHFIMT
AQAILPSVKTSAYQHGIDFFIEKPLNIAEVKSVIKLAAQNINMSNRLLQVLDLVSGAATNNNTVTISGKNKKKENTQSIL
RFLGITAGNGAPAINKLINTMIEREISFDEVNFEEFFQCDEHGKKIIFQRIRRDIKTGLNNLAHMCMDYPENDIILEYAN
NLYEYKNVHNEISFLKGERTNGGQVSLKHFFNGLIQEIN
>SEQF1778_EEI65048.1 hypothetical protein HMPREF0534_1642 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEYVIGVDLGTSAVKVSAMDHDGKIVAQQSYGYDLHQPHPGYSEQDPRDWLYETTIVIDQLILKELR
>SEQF1778_EEI65049.1 hypothetical protein HMPREF0534_1643 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTAYKNCTLNELDYAVVKGGKTTISVNGKNIVLTFEDIPAKNPKYMDIKIFSVPKHVMASIIINAYLKNDTDNLDINKKV
KEKLANCINTAARNRFGLI
>SEQF1778_EEI65050.1 transporter, basic amino acid/polyamine antiporter (APA) family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKVKEKKLNLFLLITLIVGTIIGGGIFNSPTDLILKANPMAALIAWLIGGFGILMLVLVFYKLSVVKPEMNGGIYTYAK
EGFGNYIGFNSFWGYWMGAVFGNIAFISLFFKTLNSMLGTHQLSPLMCFIGGSIILWGYTAITWFGVREASILNAIITII
KILPLLLVVIVGVFAFQPHVFNVPDWTSILSVNQTHVPFKDQISGAMSTIVWCFVGIEAAVSMSRRAKQPRDVGLATIIS
FVIVLVLYISISIIPMGILPAKELSQTSVPLAAALSHTALGIVGSLIIKIGLLISLLGALLSWFMIGPEIAYVTSYDRDM
PRAFKLVNRHGVPGFALIVYTIIMQVCLLVLLLPQLQMAYTIAYTLAATMTLVAYLLSALYGLKLAISEKMGLGFKIIAT
LASLYSVYMLVASGLEYVFASAIIFALGIPLFARAPNKMSKKEKWLATIIALAAVIALMLIITGKINF
>SEQF1778_EEI65051.1 transporter, basic amino acid/polyamine antiporter (APA) family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDEQKKGIGRGELIALIVSSCIGTGIFGITSDVAAAAAPGPALLAWIFVGIGFLMLVLSLNNLSEKRPDLTSGIFSYAGA
GFGPLGEFISGWSYWLSAWLGNIAFATMLMSSIGTFFPTFKGGQNLPSIIIAIIFCWLLTILVNNGVESASFVNMIGTIC
KVLPLVIFIIMMVVCFKAGMFTADFWGRVANNASRGTTTGSVWEQMKGNLMTLIWVFIGVEGASVMASRAKSLTAAREAS
LISFGLLVVIYVLISILPYGALTRAELAGMGQPAIGHVLQATVGSWGSILINVGLIISTIVSWLSWTMLPAETTMLVADD
KAMPKLWGKVNAKKAPTASLMITAVLQTIFLFSLLFTDKAYEFAYSLCSAAILFSYLFVGLYQMKYSSAHQEWGQFTIGL
LSAAFMFACMFLAGWQEVLLVSISFIPGFYIYYLACKENDRKVTTAEKWTMALILILSIIAIWLVANGTIAIS
>SEQF1778_EEI65052.1 arginine repressor, C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDRKARRKYIEQVVNDRKIETQEELLKLLTEAGFETTQATISRDIHALNIVKANDGDGHTHYVQLHVTPEHNFERLYQGI
HDNVRTIETVQFMNVIKTALNSSYATILAGMFDELDIPEVVGTLAGNDTLIIISKDNDDAKMVYDLIIQHMHS
>SEQF1778_EEI65053.1 arginine deiminase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQSPIHVTSEIGKLKTVMLHRPGKEIENVYPEILHRMLVDDIPYLPIAQEEHDLFAQTLRDNGAEVLYLEDLLTDALADD
NIKEEFLEKIIAESGYAAGAIHDGLKEFLLSFSTKDMVNKIIAGVRKDEIKTKYASLAELAEDKDYPFYMDPMPNAYFTR
DQQACIGDGITINHMTFKARQRESLFTEYIIKHNKRFADKGVEVWRNRYPEGRIEGGDELVLSDHVLAIGISQRTSAKAI
TELAESLFEKSDYDTVIAIHIPHNHAMMHLDTVFTMINYDQFTVHPAILHDGGHVDAYIMHPGNNGEISITHETNLKEIL
KKALDKPEIDLIPTGGGDPIIAPREQWNDGSNTLAIAPGVVVTYDRNYVSNDLLRKHGILVHEVRSSELSRGRGGPRCMS
CPIVREDLKK
>SEQF1778_EEI65054.1 beta-lactamase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMNKYDLTITKLHQMVKEGVVPGVSYLIFDHQHTIKEVTGMAQIYPETEILKPGMLYDIASLTKVIGTVPVIAQLIQKGT
LSLDDPVKKFLPEFNDDRPTIRNLLTHTSGITGYIPHRNELTASKLKNAFLTKMYVEDSLNRQIKYADVNYLYLGWIIER
IYNQPVQKVITEQVLKPLNMPTATFRPQPANCVPTEVQEKRGLIRGETHDPKGYILGESCGCAGLFASLKDLEVFSHALI
ENNLKGLLTSETTDLLFTDQTRIPGPHSRSLGWKLFHAKDRHLLISHTGFTGTWMVLDRQTDQGFIVLTNRVHPSAKNQE
YLDARDQLFAIYLKEKEKTL
>SEQF1778_EEI65055.1 hypothetical protein HMPREF0534_1626 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMKMTNKVLTSSLVILAALGLAGCTNSAAAPTKTSTSATKVSQQTSKKAASSTNSEKAKEQTSAPTSVQSTSSTNTSSTS
VNSKVANSSEKSTNQTVKAPSSSITSSSSSQSATTNSTSSAQNDQQVLTSFVKTSGVQQDGNHYYMTKNNQNNNYQIEVR
NNQGGDPNVAHLTGTYQYDPATNQIHEMNPITGNYDN
>SEQF1778_EEI65056.1 transposase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
ASVQRVLLDLADQYKPNLNYLPETLCIDEFKSMRSAKGKMSFIAVDGDRSCLFELLEDRRLCSLFKHYQQFTRQARCRVK
YLVMDMNAAYDQLVKTVFPCAQIIYDRFHIAKHLNDTMNHVRIHVFNRLRKGDSAEQKQARRIKHYWRLFLQDRENLSTK
LYYEGRYFSRVVNSVMILDLMLEYDQELGATYNFIQSLKRAYNQRDFTTFFQLLKLRPDSVSHYTIHRCQVLARYKEGIK
RGFETKFSNGRTEGINNRIKTIKRVACGYCYFTAFKTRIYLIIGHQIQTN
>SEQF1778_EEI65057.1 dTDP-glucose 4,6-dehydratase family protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
ELVVGDICDKDLVDKLVSKADAVVHYAAESHNDNSLIDPTPFIQTNIVGTSVLINACRKYDVRYHHISTDEVYGDLPLRE
DLPGHGEGKGEK
>SEQF1778_EEI65058.1 hypothetical protein HMPREF0534_1618, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KQELAEKIIKLDEEIKQESKIIKGGSVRKRRRRFLKSFVTN
>SEQF1778_EEI65059.1 hypothetical protein HMPREF0534_1619 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEDPMMNRGLKPGYNLQIATHKQFVLDYGLF
>SEQF1778_EEI65060.1 hypothetical protein HMPREF0534_1617, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
DRNNLNQAYLRVKRNKGAAGIDDMTVNDLLPYLRENKTELIASLREGKYKPAPVKRVEIPKPNGGVRKLGIPT
>SEQF1778_EEI65061.1 hypothetical protein HMPREF0534_1616, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRQDIRQELRKYQMDKIKPNFTELGRQLGCDPRTARKYYYLKDDGYEN
>SEQF1778_EEI65062.1 hypothetical protein HMPREF0534_1615, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
DVYPQSWKSTLGVFYMTKISVKTKLKAVEEYANGNVTLASVRHKYGIAEHDFQIWVGIYARFGKGPLLNPPKVTGDFRLN
LVKWKQENLASI
>SEQF1778_EEI65063.1 group II intron, maturase-specific domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
GAYARPAKQSQQRVKKALRLLTKRNRGISLTRMFEEIHRKMRGWLQYYSIGKLTDFIQRLDKWLRARIRQYIWKQWKKLK
TKVTNLQKLGLSQRDAYVFASTRKGYWRTAHSKTLSYSLTNRKLEQL
>SEQF1778_EEI65064.1 phosphate ABC transporter, permease protein PstA, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRPEKVDRLATVIILTLTGLVGLVLFALLAYLLLSGIPHISWHFLTSSAESFRSGGGIRDQLFNSLYLVVLTLIVSIPLA
LCAAIYLSEYAPDNRWTNLLRLAIEVLSSLPSVVVGLFGYLVFVLQWGLDFSLLAGALALTILNLPILTRACEDALCQVP
YLQRQAGLGLGMSKWRVTTKIVLPAALPGIITGAILSAGRIFGEAAALIYTAGQSSPAISYTDWNPFSPTSFLNPLRPAE
TLAVHIWKVNSEGLVPDARAVSNGSAAVLILTILIFNLLA
>SEQF1778_EEI65065.1 phosphate ABC transporter, permease protein PstC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEDLRQRLTQPSVESKQEASGKVISYLAITLIGGLVATILIFLTWKGIALFTGNHYSLWDFLSGIKWRPSDHVFGALPMI
ATSFSVTLLSGVIALPLALVVAIAITEILPSTAYKFLQPTIELLVGIPSVVYGYVGLTVIVPFLRRFFGGTGFGILAATC
VLFLMILPTMTSMTIDSFRAVPKQYRNASAGLGATRWQTISRVIIPSAKSGILTAMVFGMARAFGEALAVQMVIGNTTVM
PTGLMHSAATLTSVLTTGIGNTVMGTISNNALWSLALILLVMSLAFNLLMRLVSRKGVK
>SEQF1778_EEI65066.1 phosphate binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTTNKQVGIVMKKTIIGVVIVAIVCWLGGSWVLAKQQPSQEKITIVGSTALQPLAEAVANNYRTKHPQTSIIVQGGGSG
TGLSQVQAGAVNIGSADIFADQQDGINANKLDDNIVAVSGIVPIVNEELGIKNLTMKQLQQIFTGQITNWQEVGGPDLPI
TVINRAHGSGTRVAFEQTVLKPGMQAVNAQEQDSNGTVKEIIRNTPGAISYIAFAYLNDQVQSVSLDGVAPTADNITTNK
WPLWSYEHMYTQKQPSQSTANFIKYMQSEKVQKTLVTEAHYISIHDMKVEKTPTGKVTERK
>SEQF1778_EEI65067.1 transcriptional regulatory protein, C-terminal domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKKFLLMSQQDDLVQQLQAICKKEHWTYELVTTPTGLVVALEKNQISGIWWDMTEVSLDTTIATMTLIRSQVQGPITVF
TPRFTEHIQRKLYRAHVDDVIAFPLLPSVFRSLIQQRLWTYHYPQMHSLADDNMTKNDPVITTGSWEINQETYTVTKNDK
TIALTPKEFQLLSYLVDHKGQVLNRDQLVNGVWGYDILDTSRIVDIHISHLRDKLEDDSQHPTHLLTVRGFG
>SEQF1778_EEI65068.1 phosphate transport system regulatory protein PhoU [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENLVRSENMGAIFDDELKRLRSHFMEMGIDASEQIYQATKAFTDHDADLADKVLTTDTKINDEEIHLEKQALKLMALQN
PVATDFRKIISILKASTDIERLGDYSTHIARAAITLSKFEHHEDIEQPIEQMMMIVRKMLERILDAYVYTDEQVAYEVAN
EDLKVDLLYVKLQKEIMKALVKGGEDVKAYESYLAVIRNLERAGDHIVNLAEWIIYSGSGKLVELNPGKADPTLVRRKLT
GNQ
>SEQF1778_EEI65069.1 phosphate ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENSVALEVKNLQVLYGDKHVVHDVSMKFPANKITAMIGASGSGKSTLLRSLNRMNDDLATVKGEINFHDLNINQPKVNV
YRIRQQIGMVFQQPTPFPLSIYENVIYGLRLAGVKDRQILDQRVEESLRQAALWEEVKDHLKESALALSGGQQQRLCIAR
TLAVQPEIILMDEPTSALDPVSTSQIEDTLVQLKEKFTIIMVTHNMQQASRSADWTAFMHQGKLIEFNQTADTFMNPQQQ
QTADYLSGKFG
>SEQF1778_EEI65070.1 nitroreductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNETIKHQLNHRTIRAFKPTNLSAEQLNTLYSVASHTPTSMFMQQMSIMHITDPDKRAAIREISKQPYVGANGDLFILL
VDLYRNQQIRQQKGKDDGRLHTADIFFQGLDDAIMAAQNMITAAESMGLGVVPLGSIKNDPQKIIEVLNLPKMTFPVLGL
QIGIPDQEPQLKPRLPLKFIAFDNDYPKEIKLSDLSDYDQEVTTYYDLRDANRRIDSFTNQIAGAKLDRHYTKRDEIMKV
LHRQGLCTDEGID
>SEQF1778_EEI65071.1 glycosyl hydrolase family 8 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRPVYIWLLTLVVAVIYIATLAFVRIKNPEKIQYEAYRRWQETYLVRKNNKQTYVNTSNDQKHPVALSEGQGYGLQVVS
RAAEKGWANENDFDKLLNYYLAHRDYVGKHHDQLTYLMSWRQSYNKEGQWGDDHNSATDGDLYIAAALHRAAKVWPQKAP
YYHKLEQQIATDIMKYEYNPTTHMLTVGDWVTKDSKFYYLLRTSDVMPTVFDHLYDCTHDSRWQMIKNNMLDRLTALSKQ
HRTGLVPDFAWARPGSTKPVGPNTVAGKYDGDYSANACRVPMMLAKSNDPRAQKVLNKMMRFFSEQYYITAGYSLNGHRL
VKYQSNSFSAPIFYAVSCNRNEGYDNLFASQKHIFSKPLTEKNYYDATLTTLAALEGMN
>SEQF1778_EEI65072.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKFVMIVTLISIWSSLLISSITLGGAVHFWLEHSRKIVDIVPLKRYPVITIVVPAHNEEVVIAQTTQAILKLNYPADKV
ELLIFADNCNDQTAQRARTVLQLPKYEKRKAKVIERHGSGGKAGVLNDALKMAHGEYIGVYDADAMPEKNALYFLVRKIL
ENPTRYVAAFGRNKTRNAEQNFLTKCINQEIVVTQRIQHCAIWHLFKIGRIPGTNFIIQSKYVRSIGGWANGALTEDTDI
SFKIMQSGKLIALAYNSEAFQQEPERLHDYYYQRLRWAKGNYQVVLKNFKYLFRKSNWRVKLETFYYSCTFFWFNAAIVL
SDAIFLANVGFWIVHLFNPQVMIPFTFGESNILIAQLLLFNWLLMIILYILQITIAAATQFGQATNKQIWLALASYFTYS
QLFIIVSIHAVISVALDRLLRRDGTKWVKTKRFAD
>SEQF1778_EEI65073.1 hypothetical protein HMPREF0534_1606 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVRIFFWLAMVITMIFFIQALIFAALQWVIYFRVERTTLNVKSERKKQ
>SEQF1778_EEI65074.1 hypothetical protein HMPREF0534_1607 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIRRHVVESGLIALCVILTAIVLMMWWASQYAHFITTAMMIMIILGLMVGSLVPNIILTWLAIGLTTIGSAILLLGYVVM
DNSIKIMLLFAFPITASLAYFSRYIIGEWGWLDRNRAEIESYATHYNQIVKLQTAYNANKIYEKELQFIIKEQTADLWID
VTAIHWVHNQQIRQFHPQDYNYALQQIAKVLKRRRLPSEALYYLEDGTFLILSYHLPDITFAYQNQSTRAGLDELQINNS
KHQFKWGHLKVDDINATSFKNLESVMRHIKRDMETDLVVEYLRGVQK
>SEQF1778_EEI65075.1 Rib/alpha-like repeat protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KQGDEAPAGIVVAKDKDDKDTTFPEGTKVTWETAPDVTNNGQATGKVTVTYPDKTTDTVDVTVNVVPSDADKNEVKAADG
VTTNLNKV
>SEQF1778_EEI65076.1 hypothetical protein HMPREF0534_1601, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRQKLGKNAYYRIFKTITSDNGSEFSELTRVHDHVFYTDPYSPWERGSNEINNRFLRKEITKGQAIND
>SEQF1778_EEI65077.1 transposase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
ERECVQSVVIDLNAQYQSFIYRLFPNANIIIDRFHLVQLAGRALDNCRISILKQLDKQSREYKIMKSHWKLFHKKAEDLH
PEEVVFLRGVKQYMTRQNAVDLITSKFSKFAEVYQTYQDITKALNERNSELLESTILDYQKTNTEMDTAIQTLRQNRKYV
LNSAKFEYSNGPLEGINRKIKTLKRTCYGFAN
>SEQF1778_EEI65078.1 GTP-binding protein TypA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTRDDIRNIAIIAHVDHGKTTLVNEMLKQSDTLPEHFSIEDRAMDTNAIERERGITILSKNTAVKYDNHQINILDTPGH
ADFGGEVERVMKMVDGVLLVVDAFEGTMPQTRFVLKKALEQHLTPIVVINKVDRKGARPEEVVDEVLDLFIELGADEDQL
DFPVVYTSAMNGTSSYDSDVSTQEHTMKPLFDTIIKTIPAPVDNSDEPLQFQVAILDYNDFVGRIGIGRVFRGKIKVGDN
VTLMKLDGSKKNFRVTKLFGFFGLKRLEINEAEAGDLIAVSGMEDINVGETVADAEHPEAITPLRIDPPTLQMTFRTNDS
PFAGREGKFVTARQLEDRLKREMQTDVSLKVEDTDDPGAWTVSGRGELHLSILIETLRREGYELSVSRPQVIYREIDGVM
SEPFEEVQIDTPDEYTGAVIDSLSKRKGEMKNMEPGENGQTRLIFLAPSRGLIGYSTEFMTMTRGYGIMSHTFEKYAPVI
KNWNPGRQKGTLVSMNAGKATTYAMMGIESRGQLLIDPGTEVYEGMIVGENSRENDITVNITKGKNLTNVRAAGSDEMAH
IKTPTHFSLEESLEFLNEDEYCEVTPENIRLRKKTLNTNAREKEAKRRRAASRK
>SEQF1778_EEI65079.1 inositol monophosphatase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISIEELDQKAQQIIRQAGQNAYQKMENDYQIDTKTNYTDLVTTIDRENEQLINDQLRKIDPDSQILSEEGFGDKQISNM
QGHVWIVDPIDGTMNFVKQHNNFAVMLALYVDGQPMLGYILDVINNRLYHGRKGAGVYVNNQKIGQPADLGLRESLLAMN
RTLTLSGDSALKKIAQDAIGLRMYGSAGIEMIGVITGQLGGYISNLKPWDLAAGRMLAEELDLVVKSIDGSSINVLSSNL
VLVATRQVSRDIRQIIN
>SEQF1778_EEI65080.1 hypothetical protein HMPREF0534_1599 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSHNYSYPLDLSWTTKEMETVIAMFRAVEDAYEVAIDRDKILDCYRAFKQVVPSKAEEKQLGREFEKNSGYVLYRVVKA
AQESTDKRIKMVGQKND
>SEQF1778_EEI65081.1 MazG nucleotide pyrophosphohydrolase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFGSGLKSEWGRTKLDFNEYQNAAKRTLYGNEQVLTNCALGLAGESGQVVDLVKNYTFRSRKLDRKELIHEMGDVLWYLS
QIAEWADIPFEEVAKANIEELNQRYPTGFKKQD
>SEQF1778_EEI65082.1 ribosome biogenesis GTP-binding protein YsxC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVHNVDLTISAVSDEQYPKTNIPEIALVGRSNVGKSSLTNVLINRRNFAHTSSQPGKTQTLNFYDVEDKVYFVDVPGYG
YAKVSKKERERFGKMIEQYLTQREQLRGVIQLVDARHEPTPDDVNMYNWLQYYNIPTLIVGTKIDKVKRSAWNRQLSLIK
KTLDVESSTPIILFSATEKKGKDDVWQWIEERMGKN
>SEQF1778_EEI65083.1 ATP-dependent Clp protease, ATP-binding subunit ClpX [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFEDTTGMDSVHCSFCGKSQDEVKKIVAGPGVYICNECVDLCKQIIDQELAEDEAKKAFRVPTPGEIVNELDDYVIGQGD
AKKTLAVAVYNHYKRVNAMMSGDNNDTELQKSNIAVIGPTGSGKTYLAQSLARILNVPFAIADATTLTEAGYVGEDVENI
ILKLLQAADFDVERAEKGIIYIDEIDKIAKKSENVSITRDVSGEGVQQALLKILEGTIANVPPQGGRKHPQQEFIQVDTK
NILFIVGGAFDGIETIVKERLGDKTIGFGTDSREAEEVTDKNILQHVIPEDLLKFGLIPEFIGRLPVMTALEKLDEDDLV
RILTEPKNALVKQYQELIRLDGSKLTFTDGALRAMAQLAIKRNTGARGLRSIIEDVMRDVMFDLPSRKDVEKVIIDKRCV
TQHTEPRYVLKDEKAS
>SEQF1778_EEI65084.1 trigger factor [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSAKWERDSDASKGTLTFEIDVDTINKGIDEAFVETRKKITVPGFRKGRVPRQIFNQMYGEESLYQDALNKVLPDAYNEA
VKETNIQPVDQPKIDIKSMEKGQPWVLTAEVDVMPEVKLGEYKGMEVPAQDTTVTDADVDDALETKRQQQAELVLKEDKP
AEKGDTVVIDYKGSVDGEEFDGGSAENYSLELGSGSFIPGFEDQLIGHNADEDVDVNVTFPEDYHAKNLAGKDALFKVKI
HEIKEKQLPELDDDFAKDVDEDVDTLAELKEKTKKQLQEEKDNQAKAAIEDAAINKAVANAEIQDIPQAMLDDDTNRQMQ
QYLAGMQQQGISPQMYFQITGTKEEDLKKQFANDAAQRVKTNLVLEAIVDDANLDATDEEIAKEISDLAKQYGMEEDAVK
KALSKDMLMHDIKIRKAVDLVADSAKQVKDDEKSDK
>SEQF1778_EEI65085.1 translation elongation factor Tu [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEKEHYERTKPHVNIGTIGHVDHGKTTLTAAITKVLAAKGLAKAEDYADIDAAPEEKERGITINTAHVEYETEKRHYAH
IDAPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVQYIVVFLNKTDLVDDDELVDLVEMEVRDLLS
EYDFPGDDVPVVRGSALKALEGDPEQEKVILHLMDVIDDYIPTPKRPTDKPFMMPVEDVFTITGRGTVASGRIDRGTVKV
GDEVEIVGLTEDVLKSTVTGLEMFHKTLDLGEAGDNVGVLLRGISHDQIQRGQVLAEPGSIQTHKNFKGEVYVMTKEEGG
RHTPFFSNYRPQFYFHTTDVTGTIELPDGVEMVMPGDNVTFTVNLQKPVALEKGLKFTIREGGHTVGAGVVSDILD
>SEQF1778_EEI65086.1 hypothetical protein HMPREF0534_1584 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNETQQDQYLQAQKLIAEEKWQEASNILEDLINEVDDSEIGRLTIIALYHSQQYTRACTYLFEYLEVMFDSLADAQIAIK
ILCQNELFVLARQVISSLSQWQEDLLTIVTMGEEKSRQEYQETLQTRLRDFYHLGDYSLEEQQSRLQAAFKLPLNEFITG
AKFLLRDPYTHPLVKSSLVELLSKLQVADPVTVYWLDKKEYTVVPADIQPLNLLPVVSEGKRLITEKCGNQNPQTEKLAI
QEFQLQVMFLYPRINQIIKDIDEWTDVLIARIEGKKVATNTVSSTWQERLGKQIDELIEKH
>SEQF1778_EEI65087.1 hypothetical protein HMPREF0534_1585 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNNIKIIPFGGVRENGKNMYAVEIEDQIFILDTGLKYPENELMGIDVVIPDWEYLREHKNKIVGVFLTHGHADSIGALP
YFLMDFNVPVFGSEMTIALAKLAVKNHKEVKKFNDFHVVDASTAIDFNDVTVSFFQTTHTIPETLGVVLETKAGNIVYTG
DFKFDQTAKKGYQTDLARLAEIGSQGVLALLSDSAGAGITGASAREQDIGDYIKETFKYQNGRIIVASVASNIMRVQQII
NAAVAVGRKIVLSGKDIEQIIDTAMSLGKLHLPDDLFISRKEAEKLEPNQVVILETGKMGEPIKSLQQIANGDNPNLQLT
STDLVFVTTTPSYAQETEVQKTKDMIYRTGAEVKFISDDLNPSGHANQNDEQLMLNFMKPKFFIPIQGEYRLLDRHAELA
EEVGVPKENIFLVNKGDVLTYKNGKFHVGEHIDVSNTMIDGTGVGDIGNIVLRDRRVLSEDGIFVVVATIDRKKKKIVAR
PQITSRGFVFVKTNRQLMQQSADLVEKIVQENLDQKEFDWSHLKQDVRDKLNRFLFDQTKRHPVILPVIMEINQHQKKIK
NNVEKKEEKSAKSRSTKEHHRGRGKKRMAKEKK
>SEQF1778_EEI65088.1 ribosomal protein S15 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAISKERKDQIIKEFATHEGDTGSTQVQVAVLTADINELNDHLRTHKHDYHSQRGLMKKIGHRRNLLAYLRRTDLPAYRE
LIQKLGLRR
>SEQF1778_EEI65089.1 ribosomal protein S20 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPIIKSAIERVRTSEKAEARNASQLSQMRTAIKKFDKAKLAGADNLDDLYKAAISAIDRAHSKGLIKANKAARDKSRLSA
RYAK
>SEQF1778_EEI65090.1 DNA polymerase III, delta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDIAQLSTQLKTKTPAMVYLILGKQQVLQQQAIDAFISLIPENEQVMNVGRYDMEATPLAVALDDAMATPFFGERRLVII
NKPFFLTGEKRHSKVEHDLDSLKKYLEHPEPSTILVFAAPYEKLDGRKGIVKQLKKTAVLVDASPLDERAARQRVRTQLS
TAGFEISEAALDELVQRTNADYGMMDASLTKLKILAYHEKKIDQNMVAALVPQSLDENVFDLVTAVLKHNQIKALDLYQQ
LLAGQQPPLRINAVLVGQFRLLIQIKVLSKRGLTQGSLASQLNVHPYRIKLGLKTARDFSMQALENAYLGLIRIEQSLKT
TQRDPSLLFQLFMLQYSQQSKGA
>SEQF1778_EEI65091.1 DNA internalization competence protein ComEC/Rec2-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMAILCYSLQKNWTTITANKQMEVTQKILVYPDELKFNGNFMTGTAIDIQTGQREAIMMSFKSPQMLKNIDKLTTPSIWL
INGQLKPIIPRTNENQFDNLTYNHHRRICNQVQINRVEQMVRQKRGIVGWCHTLRKRISLYFETLPPPLSTYCQQLIIGS
SNEDSAELMVSIKRLGLLHLFCISGMHIVLFTDLLRRLLVHLWWRKESIDLFLIIILPFYLLVGGGATSLIRATIMAELG
LLHRYLNLDSLDGWALSLLIGLVIDPLLLLTLGGQLSYLLSFILQVLPESVRGFKQSLLLNLISLPSLLSYVYEVHLLSF
GVSYLIIPLFSTVVFPAVLVGALSFKLFEPRAYLINAGLKCFQYILNWLSDFPGMIHFGKPPLILALLLFAASLFVISQE
TSLKSWKILALLYVITGGIIHFPLNGEVTFVDIGQGDSIIIREPFNRRVTMIDTGGKLNFKKPDWATSKHSQDDAQRITI
NYLKSKGIRQIDNICLTHHDADHIGYLTTILDNIAVKRLIVPAGMERQPALLNKVRTAEKSSPMIIPVTDNVKLSSFPLQ
ILHPFVPGEGKNEDSLVLAGKFGGKRFLFTGDLDQENEEKVIQKYPQLKSDILKAGHHGSKTASSYLFLQTVAPKYAIIS
AGRFNRYRHPDEITIKNFQRLNINYLSTQQFGMIQYVYHGRNGKIKTTLRGDETSWTLPNYLHN
>SEQF1778_EEI65092.1 ComE operon protein 2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKPRIDWDQYFMIQAALLASRSTCNRLSVGAVLVRDKRIIAGGYNGSVAGDAHCIDEGCYLRDGHCVRTIHAEMNALLQC
AKFGISADGASIYVTDFPCLQCTKSLLQTGIKEINYIRNYHNDDYAMKLLKLKNVALHQIKLDSDILEEVDLDQYINPDQ
K
>SEQF1778_EEI65093.1 comEA protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQQLSELWIKYRVQVLMIVIAAVVGGYWILNKNNNDALISNTNAVLTSSETGSSLTSTTTMKGTVAIDIKGAVKMPGVYE
LKADDRVNEALKAAGGPLPNADLRQVNLAKQLTDQQMIYIPLQGETPIVSSSTEPSAANNENGSDSSAKINLNTATKEQL
CQITGIGDKKADLILQYRQEHGQFKSIDELKEINGFGEKTVAKLKDHLSI
>SEQF1778_EEI65094.1 hypothetical protein HMPREF0534_1592 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKQDNVILRRIGIILGLVLLLGCFLFWPLNSYIESPGTAADLQSFVKIKGHPDRYKGSFMLTSVAIQRAHPATYLYAKM
MPYMSIESAEDVTGGQNSATYDRVQKFYMDSSINEAIAVAYNAAHQKVTRRYLGIYVLQVQPNSKFKHDIHVGDTITKVD
GHHFNTAQGFQKYIGAKKVGTPLVVTYTRDGKTKTVTHPLVKITNTNKPGIGIILTNNMQVKTKVPVKVDAGQYGGPSGG
LMFSLQIYQQISGKDLQRGRKIAGTGTINSDGTVGEIGGIDKKVIAAHRAGATIFFAPYIKPTKEILKYEEGHLTNYQMA
KKAAKKYAPGMKVVPVTSFDEAVKYLQTHK
>SEQF1778_EEI65095.1 pantetheine-phosphate adenylyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVAVFPGSFDPLTLGHLDLIKRGSALFDQLAVAVMTNESKNPLFTVEERVAQIKEAVSGLDNVSVITTEGLTVDLMNRI
GADYLMRGLRNTTDFQYERDIAAMNNFLDDQCETVFFLAKPEYQHLSSSLLKEVTSAGGDISAYLPANINEALKKRLMER
EMLRVKKDNEKAR
>SEQF1778_EEI65096.1 RNA methyltransferase, RsmD family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRIVAGDFGGRKLSAVPGMATRPTTDKVKEALFNIIGPYFNGGTSLDLFAGSGGLSIEAVSRGISQAVLIDRQYQAIKTI
KKNIDVTKHVEQFKVYKMDAHKALNLFAKDKLKFNLVFLDPPYAKQQIVNDMEQMVKNNLLAKDAIIVAETDQNAKLPTD
LAEFNFIRRQEYGITVLTIYQYKGESK
>SEQF1778_EEI65097.1 hypothetical protein HMPREF0534_1595 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFKLIPRRSLIIYINNNRVIRALRHYGQIDYISRRMHYVVMYVDQSDVEKIKEKISRLRAVKKVELSARPDLDPTLADLE
LTGVYQLHDEDDKK
>SEQF1778_EEI65098.1 Tat pathway signal sequence domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKKKLRFRKIRSVWNNVRYLDYYILVPYLALCLVGIVMVYSASASIEMQNGGTPLGYLVKQTIYVVMGVAVMAFMANYP
LRHYRTPRFLRDSTLVVGALLVIVLVFSRAVNGAKGWISLGFFNIQPVEICKLYFILYLADRMAKIRQRGQHFTTDAKGP
WLIIAVFLGLIMIQPDIGGMAINGAIIAIMLLAADYKWGVGLEIILVLPALGYLGLERLVESGLLQGGGYQVARFVAFLN
PFGNASGSGNQLVNSYYAISNGGVFGVGLGNSIQKMGYLPEPNTDFIMSITSEELGLVGVTAILVTLLFLICRIIQVGVR
ADSLYQTLICYGSATFFTIETLFNIGGVLGLLPITGVTFPFISYGGSSMLILSATVGIIMNISMKQNRDRLVMGKPFIPE
TGGVKNV
>SEQF1778_EEI65099.1 hypothetical protein HMPREF0534_1571 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFLVIMGALFLILGGFYLANSWQQYREWKSGTIIVILSIIAIIYGVINLPYFHHNNSASSSQSTSSSQVARSSSFSSFS
NGLAIGNSSANEAQQESKTMAVLRQMQKGYSKLGSVDYNEDSKTFQITPTDDNTVEALKALAQDPSQAEQMGWPNLTKSI
KSNSGQVEKALGEGYSISIMNPSDSSKALYTAKDGKTTYDIANQ
>SEQF1778_EEI65100.1 adenine phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALDLYKYVASVPDYPEKGIIFRDILPLMADGAAFKQATDELVDYAKDKKVDMVVGPEARGFIVGCPIARELGVGFAPAR
KKGKLPRKAISASYDLEYGTATLQMEADAIKPGQRVLVVDDLLATGGTISATIDMVEQMGGIVVGCAFLIELKDLHGRDK
LKDYDMKALMEF
>SEQF1778_EEI65101.1 single-stranded-DNA-specific exonuclease RecJ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDAKFKWELADNASSVTVDNLEKELGISRILATLLAQQGIDSTEQAKKFFEPSMEEIHDPTLLHDMDKAVERIEQAVEK
QEQITIYGDYDADGITSTSLMYETLLSIGANVNYYVPNRFTDGYGPNMDAYQRLIDNGTQLFITVDNGVSGKNVIDKVIA
AGVDVVITDHHELPADLPNAVAIVHPRYPGSNYPFPDLSGVGVAFKVAWALTGEFPVEELDLVAIGEIADVVNVTDENHA
LISYGIQQLRQGMRPGLAALMKLADIKANNLTDQDIGFGIAPRLNALGRIADANDGVKLLTSLDENESQKLAKEVDQANK
ERQNLVAEIMKEAEKQANSSANQQKRTLLIVGKGWHQGVLGIVASRIMNETGKPTIVASTDQNNPTLIKGSGRSIDSFNL
FNALEAHRELFITFGGHPAACGLSFDQKNIVPLQIALEEEAVKQKFDPTVKQPLPIAMKLVPADVTQQLYNDIQRVAPFG
PGNMEPVFELNNVKVVDVKTMGQEHQHLKFSIVSDKKNLTVVAFGQGNLATLLSAPTGQINLAVKVSLNEWRGKKSVQLM
LEDLQINGTVIIDERTNKLTPQLFSSSDYYIVREPRLRENITPHVAPGYTLSIEEAIKTDFSGQQVTLVDCPSSEEMLKR
IFAEDEGEPATIRLLLYQRKSAYLAGLPTRNDFAQLYRFIYRQKELKWPMQAKAVSNHLKINMDRLNLMIQVFSEAGFVT
IKDDVLKFNESTNKTDLTQTKRYQKQLAQYKVEQQLLFNDAATVAKWLLEYLNLE
>SEQF1778_EEI65102.1 oxidoreductase, short chain dehydrogenase/reductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFRSKNEKRWQKMLRRVKTLRFLRNEVVLITGGSSGIGKELAFEAARRGAIVVVVSRNLEKLQEVAKKCLILSGRPAFA
YQLDVTDPDQIDDVLSKVQHEVGGIDVLINSAGLGDFIPVVKESYSSMEKMVHTNLLALMYISRCVAKQMMDQGYGAIIN
MGSLAGKLPTPNSAVYSATKAGVIQFDNVLRMEVADYGVQVLTVNPGPIDTPFFDKADNDYTYRAHLPKWIFISPEDLAG
RIWNNVGYKTREINVPGYVAYLGWAYQVIPGLGDWAIKKFFDFQQDKKNL
>SEQF1778_EEI65103.1 ribonuclease Z [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLEFLGTGAGSPSKQRNVASVALRLLEERNAIWLFDVGEATQHQILNTTIRPRKIEKIFITHLHGDHIFGLPGLLSSRS
FQGGTEPLTIYGPIGIKRYVQTSLQVSESRLSYPLHFVEITDDGELFNDHGFRVIARKLDHKIACFGYRIEEADHPGELQ
VEKLREQKVPSGPIYGQLKAGKTVTLPDGRVLDGHDFIGTPQPGRIIAILGDTRQTKNAILLAQNADVLVHESTFAKDET
KMAYNYYHSTSKQAAEIAKKAGVKKLLLNHISARYTGKAAYQLAYQVRNIIPDTRVVNDFDVIDIPFKK
>SEQF1778_EEI65104.1 Obg family GTPase CgtA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNMFVDQIKIEVHAGKGGDGMVAFRREKYVPNGGPAGGDGGRGGSIILKVDEGLRTLMDFRYHRIFKAKNGGNGMSKQMT
GLSAEDTIIAVPQGTTVRDLDTGEIIGDLVEKGQELVVAKGGRGGRGNIHFASAKNPAPEIAENGEPGEDHYLELELKML
ADVGLIGFPSVGKSTLLSVVTGAKPKIAAYEFTTLTPNLGMVMLPDGRDFAMADMPGLIEGASKGIGLGLKFLRHIERTR
VLLHLVDMSSEDPHQAIERYRQINKELANYDPELLKRPQIVVATKMDLPNSADNLAAFKADLAADKTLEKQPEIFPISAV
THQGVQQLMQLTADLLDKTPAFDSESHDKELVAEYRAAAPDKKDETDFTITKDEDGTWVLGGEKLIRLFKMTDLTHEESQ
LRFARQLRHMGVDDALRAKGVQDGDLVRIEKFVFEFIQ
>SEQF1778_EEI65105.1 excinuclease ABC, C subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASEHLEHKLALLPDKPGCYLMKNINDQIIYVGKAKNLKNRVRSYFKSSHTGKVAKMVSEVADFETIVTSTNKESFLLEI
TLIQKHQPYFNIKLKKGTGYPYIKITNERDPQIKIVSKIKKDGGYYFGPYPNVYAAEETMHFIQKVYPLRRCNGYQGRPC
LYYHMGQCLGACFKDVPKSEYEEQIKKIKSFLSGNTATVKRQLTKKMQLAAENMEFERAAEIRDQLHYIEVTVEKQKIIS
NDKTPRDLFNFYMDKGWLSIQIFFIRQARLMKREKRLFPIVDTAVEEMTSFILQFYNRRNNILPREILLPKGLPNKEISE
ILGVPVRTPVRGEKRDLLAMAHENAQLSLDEKFRLLEMDQSKTTGAMKEITDALGLPEGHRIEAFDHSHIQGADPVSAMV
VFVNGEPAKNFYRKYKLKTVINHADEAASTREVIRRRYSRLLKENKPMPDMIFMDGGEIQMDAAKDVLENELGLDIPVVG
MVKNDKHQTADLLFGDDDHHINLNPRSQGFYLVQRIQDEVHRFAITFHRRVHTKHSLSSRLDEIKGVGPRTRTKLLKKYG
SITKIAQASVDEIHSLGINRPTAQLIKVSLQKNAEVAKGSSHD
>SEQF1778_EEI65106.1 hypothetical protein HMPREF0534_1578, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLVTRRSEQLDKLFDQFAIDPKKPKATKKNDDKKEKDSKDK
>SEQF1778_EEI65107.1 nucleoside triphosphatase, D5 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNKALATNNPASQGLKALFREHKEAKEKHGQDRTIKSNHDLLNLLKETGKNWRDEHKEVKKKNGQEVEIVHHVPARSIA
YMLEKHLKTAVIGDSAKDVENAPLSFYDLDTGLYTNSSRLLDSFILAVDDTTNSRARKDIREWLRIEAPTKSINKSINLV
PVGNGIFDKENKKLLPFNPKYVFTSKVATKYVDNDIPEPTYNGWTFSKWIEELSNGGEDKATLLWQMIASVIQNRRTSNV
LFCLIDNGEGRTGKSTFEALLMNLVGKNNYTALKLEEFDHSFLLAQAYGASLIIGDDNDPKGYIDNGSTLKSIVTNELVL
INPKGQRPFSAKFYCTIVQSMNGFPRFKDTSNGLYRRFRLIQFNHQYPDTPDGRKVKDEYVKDQRLLQWILKKALQVNID
TIINTRESQEAVNDLQLENDIVLSFVNEVVPNLESTRIPIALLFALFRKYVDDNNSKNGMTRATFTRRIKPLMERNGWNY
KKSRPLDLLSDSDINQLKSTSYYDYNDFRKNDHQPQYCFVKE
>SEQF1778_EEI65108.1 bifunctional DNA primase/polymerase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPNKLNYAIQYAQKGFYVLPTQGKRPLIKFANTPPLTVEQVKYYWSKYPDANIALRTVDFFVLDIDTKEAHGKDGMKSYQ
TLKNTGLIAPTLAQLTASGGNQLFYKKPKNIPVNQVIGLKQGIDIKAHINNYVIVPPSTTSKGSYQWLNKLPMREPKTEL
VKFINKHHPLNNHKNDWSKHHTDKKWTGIVLDNLVKGAPEGQRNDYMTRLCGQMIHAGADDNTIWLLIQYANSFNSPPLE
NKELEKILSSIIREEIGKS
>SEQF1778_EEI65109.1 hypothetical protein HMPREF0534_1563 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKQFNIDEVENSLAQMYQIQGLLGALDNILNYILDRTNGENYSSIKQSEINLIAYELFRDKNAINSLIITIQQQNDQAL
KKLSEQIDLYSKSGEEQNA
>SEQF1778_EEI65110.1 hypothetical protein HMPREF0534_1564 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKHLDKDEQRIYDLLPKGIDRPKPLKELVKLSGLKSREVRGIIYRLIVLHHVPIGAQYKRPNGYYIITNNEERQQALAPL
TSQIAMMSKRAQVIGNVELENEE
>SEQF1778_EEI65111.1 hypothetical protein HMPREF0534_1565 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRGAYFMKLLATIDKHILAYWNTTPDERLWAYLASLPVAVLVFDAVAQIIK
>SEQF1778_EEI65112.1 hypothetical protein HMPREF0534_1566 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDATIKMQLPEDLQQAITHMARQAIKQALIETKEKDGFPPYMTKTETAKYLHIAPKTLIDWEKHCNDIPTIEIEGVTRYQ
RASLDKWMQQHRLNK
>SEQF1778_EEI65113.1 DNA binding domain, excisionase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKYFSYQEAMNYMGFKTQDTLRTYIKQGLPTIQVGKSKRISKSDIDKFMANHRVVATQDK
>SEQF1778_EEI65114.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVEYVLKFRRVMYMSENKKPHNRIAELRKEKGLTLQQVADAIGVGNNTISRYETGKREPKLETWQKLANYFDVTVYYLQG
YGLSIDQAKNKVISIIHNAYFEDTELTSAVDSYLRTISPKKKAIFPFDFYKDNETDYPLTEQVKKFWIDNFSFIFKSESF
EDTLLNIDDYPDSLLLNDTVFTINKRILNLQKTNVGKIYTSQFSKQNNQKFMDLERTILVSNKADVSIAFDEYIKYLQNL
KSKLLNS
>SEQF1778_EEI65115.1 hypothetical protein HMPREF0534_1569 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKIGLICATALLGMSLTACGSQLTKKASSSSKTSSSKVVKHHKKANKHSEKKQESVSSSSSSVANSSNQQTTKQQSQAN
NSQQASSNNGNGQLPPSTDLHDFVNRYGESPAAYLSDHYGMSPEQAVQSVPNNMKSSGEIQDTYQLQQGQDPFNQ
>SEQF1778_EEI65116.1 putative flagellar protein FliS [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSYAKKAKKGYYGIAEYRDKNGKRHQKSAGCFKLKRDAIKAAQQLEDKYSRVNIEMQAVTFADYYQNWFSIYKENSSLSD
ITKSRYRTFSKTIADYFKDTKLVNIKRSTYQQFINWYGANHAFSSVSKLNGAIRACVSYAIDDDIIAKDFTHNVQLVYNE
DNQTKVEYLTNKEIKSLKKAVVANLNHYNTSRYMILTAIYTGMRKSEIQALTWNDIDFLHSTIAITKSWDDAKKAFKTTK
TESSQRTIKVNRQLLNRLAELKANNTTMVFQNVLGTIPTSNALNKCLRSIMSECGIEKQGFHFHSLRHVHVAYLLSKGVD
IYAISKRLGHSNITITLNTYSYLIDEYKAKNDTLIIDKLSEL
>SEQF1778_EEI65117.1 hypothetical protein HMPREF0534_1557 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MARKQKLLSQSIGHLRVIEQEAVKIAKTYLKQNHDYSLIAKRISFMNANYITAKDNDIHAMALYELKERANIIDKIKKHD
LTSGLIIEYRFIKSCSVNRTLEQLQQQGMKISERTLQRKQHEALLLVYSLIPDKDTKLIK
>SEQF1778_EEI65118.1 hypothetical protein HMPREF0534_1558 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIIPTIDQKSACKETKDYFKQFEDWQLLYDRRLISDRANPDENLSAKYELTERKAVIKAVEQIDLASAIILECRFIKKY
STQRTIEQLASHDITITVGNFYHRQKKALLMAYEFIPKSNTKIVK
>SEQF1778_EEI65119.1 hypothetical protein HMPREF0534_1559 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKMKINIQYPPLIEQAYNHLLSIGLHPNKDKLYKMLVVEGMIDELGNPTKRAIDEGLIEVAENNQIERFKAGNPLFAHI
PDEHFKVHKGQVLIDCYALKTVSTTVLNDPEATAEQKENAQSLLDKVNNLDHNEWH
>SEQF1778_EEI65120.1 hypothetical protein HMPREF0534_1560 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTRVKVFSSYHENELDILMNKWLAEHPDINIRDIKLSSSLASVNDDGIPLFTAMVIFTPRTAPI
>SEQF1778_EEI65121.1 GTP-binding protein LepA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLEEMKERQKHIRNFSIVAHIDHGKSTLADRILEMTDSISKREMKNQILDDMPLERERGITIKLNAVALTYHAKDGEDY
IFHLIDTPGHVDFSYEVSRSLAACEGAVLVVDATQGVEAQTLANVFLALDNDLEILPVINKIDLPSADPEGTKKQIEDEI
GLDTDEAVDISAKTGMGVDEVLEKIVKDVPAPTGDLTAPLKALIFDSKYDDYRGVVLSVRVVEGTVKKGDRIKLMNGGTE
YEVAEVGINSPKPLARDVLMAGDVGYITAAIKDIKDTRVGDTVTSADNPTDKPLEGYRQMTPMVYAGLYPTDNAKFNDLR
DALEKLQLNDAALTFEPESSQALGFGFRCGFLGLLHMDVIQERLEREFNLDLITTAPSVTYHVELADGTTKEVENPAEMP
DTSSIKAIKEPYVRASIMVPNDYVGPVMELCQRKRGDFDTMEYLSDTRVNVIYHIPLSEIIFDFFDKLKSSTRGYASLDY
EIDGYRPSNLVKIDILLNGDKVDALSFIAHRDFAAERGREITAKLKKIIPRQNFEIPIQAAIGSKIIARTNIKAYRKDVT
ARIHTGDPDRRAKLLDKQKRGKKRMKAVGKVDIPQAAFMAVLKTDEQLDEK
>SEQF1778_EEI65122.1 chaperone protein DnaJ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQFGSAGPQGAGGQG
FGGFGGGQAYSNFGGGFDDIFSQFFGGGGRTRRDPTAPRQGRDLQYAMTLDFMDAVFGKTTTIKYNRDAECKTCHGTGAK
PGKSPITCPRCHGAGVITSVRQTPLGNMQTQTTCPECNGTGKIIKPEDRCDACHGAGHVHERHELEVKVPAGVDDGQQMR
LQHQGDAGENGGPAGDLYIVFRVTPSREFRRDGSTIYVDRDISFAQAALGDEVKIKTVHGDVNLKIPAGTQSETNFRLRG
KGVPHLNGNGNGDEHVTVHVKTPKSLNKRQREAMLAFAAASGEDVKGVKKTVLDKLRDAFEDK
>SEQF1778_EEI65123.1 chaperone protein DnaK [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASNKIIGIDLGTTNSAVAVMEGNEPKIITNPEGSRTTPSVVSFKNGETQVGEVAKRQAITNPNTISSIKSHMGEAGYTV
EVDGKKYTPQEISAMILQYLKKYAEDYIGDTVTQAVITVPAYFNDAQRQATKDAGKIAGLDVKRIINEPTASSLAYGLDK
KDKDEKILVYDLGGGTFDVSILELGDGVFQVLSTNGDTHLGGDDFDQKIMDWLIDGFKEEHGVDLSQDKMALQRLKDAAE
KAKKDLSGVQEAQISLPFISAGENGPLHLEKTLSRAQFNQLTNDLVERTKQPVLNALKDADLTFDDIDEVILNGGSTRIP
AVQEMVKELTGKEPNHSINPDEAVALGAAIQGGVLTGDVKDVVLLDVTPLSLGIETMGGVFTKLIDRNTTIPTSKSQIFS
TAADNQPAVDIHVLQGERPMAADNKTLGNFQLTDIPAAPRGVPQIKVTFDIDKNGIVNVSAEDQGTHKKQNITIKSNSGL
SDEEIERMKKDAEEHAEADKKKKEEVDLKNEVDQELFQVDKTLKEVKGKVPEDDIKKAESARDELKKAKESGNLDEMKAK
KDALNKVIQDLSVKLYQQAQGAQGGAANGQPGDNQQNGNNNGNDDNTVDGDFKDVTPDDKK
>SEQF1778_EEI65124.1 co-chaperone GrpE [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKEKQEEQQKQTAPENEKAPKKDIKKEASDKKDDQTVKLKEEIADLKKQLADKDDKYLRAEAEIQNMTNRFNKERAQIL
KYDGQDLAKSILPVLDNLKRALAIEVVDDNGKQLKKGIQMVHDHLVKALNDHGITEIKADGETFDPTLHQAVQTVSVEEG
QKPETVVNVLQAGYQLKDRVLRPAMVVVAQ
>SEQF1778_EEI65125.1 heat-inducible transcription repressor HrcA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTQRQKKILQAIVRQYTSTGQPVGSKHLAEKLPFKVSSATVRNEMAVLEDNDLILKEHSSSGRIPSKRGYRYYVDNLLD
PQAVTDNDLVVIQNSLGTGFQKIDEIISHSADILSNLTSYTAFTLKPEQESVRLSGFRVVPLGNHKVIAILVTDSGEVEN
QSFTLPADIDTDALQAVIRMINDQLVGLPLSEVVKRLKDDIPLQVLHYMHSPDGFLDIFDNVLSQAARERFFVGGRLNLL
DFASTHDPHAIQSLYGLLDKNDNLSNILDSTLTSDNGVNVKIGQEISKNKLLDDYSLITASYNVEQYGRGIIAVLGPTRM
PYSRTIGIVNAFRQELAKRLLDFYRHYYDS
>SEQF1778_EEI65126.1 hypothetical protein HMPREF0534_1530 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKHKEHRYIQPQNTQEAMLLIQKLFNKYRNASLTNELLEYHNNLIYRLQSDIKDEAIKENNPNQLKALASMTEIMRNWTT
VRLNGQPFNGKMRHFKLVTDGGFKFERNIHKINQTTSHRGSRH
>SEQF1778_EEI65127.1 riboflavin biosynthesis protein RibF [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQVIKIHHPLEKRLIPAGPIVLAMGFFDGVHRGHQAVIKRAREIAREKGLPLVVLTYDHAPGIVYRQYKGGFKYLSTVDR
KLELLNDLDVDRVYLISFTSSFASLSPQQFVDEYLVGFHAQTVVAGFDHTYGKEDIASMKLLPKYAAGRFEVVTVPKFTE
DGSQEKVGSREIRKLIDAGNVEAANQALGYPYQTTGLVVHGLARGRTLGFPTINVEHPEEERIPGIGVYAVKVKLGKKWY
DGMASVGHNITFGDANQLTVEINLFDFQQMVYGEEVVVRWYQYLRGEEKFTGADALVAQMKQDEQNARRILEKYK
>SEQF1778_EEI65128.1 tRNA pseudouridine synthase B [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDGIIPLYKERGMTSFACVSRLRQILKTKKIGHSGTLDPGVAGVLPICVGNATKVVDYLMQSGKQYQGELLIGFATTTQD
LDGEKIEDKEVTNEIPTSEILSAMNSLTGTIIQIPPMYSAVKVNGKKLYEYARAGETVERPKRQVTISKFKLLSSKYDEE
NKQQRIRFNVECSKGTYIRTLVVDLARKLGYPGVMSLLTRLKSGGFTLDQTLSLDNVRDAVATQTLQQYLYPLDYALKDY
PQLTIQEAQWKKVQNGGWLSPSELNTSEKEIVLSFDGQVKALYHFDPKNKMYKPTKMFAVN
>SEQF1778_EEI65129.1 ribosome-binding factor A [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPSKHYRVDRLAQEIQKDVDEILLKRVRDPRVQNVTITGVDVTGDLQQATIYYSILSDLASDAEKAQAGLDKATGLIRSE
LGARLNIFKTPEIKFVRDPSVAYGSRIDQLINDLHKKEK
>SEQF1778_EEI65130.1 translation initiation factor IF-2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKERIYELAKELKMPSKDLVNMANRQGMGVKSHMSSVTPDQAQQLRQLAKGGQKTTNNQHQPVKKNDGHNKQNNHQAQN
HNQHHDHDKAQNERPQKKNNSRPNNGTKDNNQHQNNGGRFGGNLNNDQGRNGKRFNKKNKKNKKHNKNKRLREVAHKQPT
QRKDKPLPEVLEYTDGMNAQDLGKILHRSPAEIVKKLFMLGVMINQNQSLDKDTIELLATDYGIEAKEKVQVDVSDIDKM
FEDEQKNTEHQVTRPAVVTVMGHVDHGKTTLLDKLRHSHVTEHEAGGITQEIGAYQVHYNDQLITFLDTPGHAAFTEMRA
RGANITDITVLVVAADDGVMPQTVEAIHHAQAAQTPIIVAVNKIDKPGANPDRVTEELAKYNLIPEDWGGDTIFVKISAK
FGKNLDELLDMILLQAEMLELKANPDQNAAGSVVEARLDQGRGSVATVLIQQGTLHVGDPIVVGNTFGRVRTMTNENGRR
IKEATPSTPVEITGLNEVPEAGDRFVVFDDEKTARAAGEERAKRAMDKERQKTSHVTLDNLFATMKKGQMKTLPIIIKAD
VQGSVEALSQSLQKIKVDGVRVDIIHQAVGAINQSDVTLAEASNAVIIGFNVRPTAVAKTLADSNSIDIRLHRVIYDAIE
EVEDAMKGMLEPVYKEETIGQVEVRQIYKASKVGTIAGGMVTSGKITRDAKVRLVRDGVVIYEGELGSLKRFKDDVKEVK
QGYECGLTIENYNDIKEMDVIEAYKMKEVPVK
>SEQF1778_EEI65131.1 ribosomal protein L7Ae [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKNKEQVLNLLGIARRARQLQSGEEIVLKNIQTKKAKFVFLASDAGKASAKKITDKCKFYGIPFSTDFTREQLSRATGQ
ARTVFCVMQSGFARKFEELLTMR
>SEQF1778_EEI65132.1 hypothetical protein HMPREF0534_1536 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKRKIPMRKDIVTGEMMPKRQLIRVVKNKENEVSLDPTGKKPGRGAYVAVDVDIAKRAKKEKTFEKAFHVQLDESFYDE
LIKYADHLQARQELFGNDQK
>SEQF1778_EEI65133.1 transcription termination factor NusA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKPKINTEMIGALDYLEKEKGIKKEIVIEALEQALESAYKQNYGDKNVEVEFNSLTGNIKVYAVKTITDDEEAVEADSN
EFMSLADARKLPHGQGYDIGDEIREEVTPRDFGRIAAQTAKQVVMQRLREEERKIIYDKYKTYENEIITGEVSREDKRFT
YVDLGDGVEGAMGFRDKMPNEHYHVHDRIQVYVTKVNDDRRGPQIFVSRTAPELLKRLFEREVPEIKDGTVLIENIAREA
GDRAKVAVYSNDPNVDPVGTCVGPRGSRVQAIVNELDGENMDIVEYVKEPAKFIANALNPAEVLDVIFNEEKAASETEDS
EGEETTEGQTERSCTVVVPDSQLSLAIGKRGQNARLAARLTKYKIDIKSESEMAENDQESEEVADSEENVDNNEE
>SEQF1778_EEI65134.1 hypothetical protein HMPREF0534_1538 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVTRLSSVVETVTDLVTPILQDHDFYLYDLEFVKEGKSWYLRVYIDKDGGITLEDCALVSDELSEALDNVEPDPIPQAY
FLEVSSPGAERPLKKEEDYQRAIDHYIHISLYQQINGQKVYEGTLTQLSNKEITLDYLDKTRHRQITIDRQKIAQARLAI
KF
>SEQF1778_EEI65135.1 DNA polymerase III, alpha subunit, Gram-positive type [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLSRQELFGKLLEQIHFPEKDNSAFRNAAVQSVVVHKKSRHWEFHLIFNKTLPYDLFTQFNQSLQLGFKDIAKVSLKIS
TPMTELDESQIANYWQFIINKAISDTPMLQQACLQTAPEVKEGRVTLVVENEVIKDLLAQKALDKIEKSYQELGFPKFRI
HPFVDQSASQAKIEELKAKHEKADAALAAKAAARIKKNEAAKKTAKKSAPVAPADGPVQLGRMIDSKQNVIQMKDIEGEE
RSVVVEGYVFNAEIRELRSGRQLLTFEITDYTSSFAVKKFSRNSDEEAQFANIKAGMWLKVRGPVQEDTWMRDLVITAYD
VNEVTHTARQDKAPQDDKRVELHTHTTMSQMDATNSITELATRAHKWGHPAIAVTDHGNVQAFPEAFSVAQKTGIKMLYG
MEANVVDDGIPLVYNENHEELAHQTYVIFDVETTGLSAIYDKVIELSAVKMQDGNVLERFDEFIDPGFPLSEQTTNLTSI
TTEMVQGSKTEEEVFQMFKDFCKGCIIAGHNVAFDMGFMNTGYERHQMGKIAEPVIDTLPLARFLYPDMRGYRLNTLSKK
FKVALEHHHRANYDSEATGHLLYKFLKDAEARYDVKYVDDLNKHMEENNAYRHARPFHVTIFAQTQAGLKNLFKLVSLSN
VEYFYRVPRIPRTVLTKYREGLLLGTACSSGEVFTAMMEKGYDQALEKARYYDFIEVQPKPNYAPLLEQHVIADEDHLED
ILKNMVKLGDELEKTVVATGDVHYLDPHDGIYRKILINSQGGANPLNRTERPEVHFRTTDEMLNEFAFLGEEKAHELVVE
NSNKIAAEIDDNIRPVKDKLYPPHMKGAEQEIQDRTWNTARKWYGDPLPQLVQDRIELELNSIVKNGFSVHYLIAQRLVA
KSNKDGYLVGSRGSVGSSVVATLSGITEVNPLPPHYRCPNCQFTHFYTQGEYSSGFDLPDKKCPKCGTLMVKDGHDIPFQ
TFLGFKGNKVPDIDLNFSGDYQPIAHNYMKVLFGEKNVFRAGTIGTVADKTAYGYVKAYERDTEKEFRKAEEDRLAKGAT
GVKRTTGQHPAGIIIVPDDMDIYDFTPVQYPADDQTAAWETTHFDFHSIHDNILKMDILGHDDPTMIRALQDLSGIDPQS
IPMDDPGVMALFSSPKVLGVTEEQIQSKTGTLGLPEFGTRFVRGMLEDTHPKNYSQLLQISGLSHGTGVWLDNAQELIKQ
GIATIANVIGCRDNIMTDLIHYGMDSEISFQIMEHVRKGRGIPDEWQEKMHEANVPQWYMDSCLKIKYMFPRAHAAAYVL
MALRIAYFKVYFPLVYYCAFFSVRADDFDVVAMSHGKDAVKQRMKEINDKGNDASAKEKNLLTILELANEMLERGFKFKM
VDIEKSDASDWLIDGDSLIAPFRAVPGLGLNVAKQIVAAREERPFLSKEDLAERGKVSQTLIDFLTDNHVLDKLPDENQL
SLF
>SEQF1778_EEI65136.1 proline--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQSKVLIPTKKEAPSDAEALSHKMMIRAGYIYQVSAGVWSYLPLAYRVIRKVENIIRDEMDKAGAVEMLMPGLLPADLW
KESGRYESYGDNLFKLKDRRDRDFILGPTHEETFTEVLRDSIKSYKKLPLVVYQLQDKFRDEDRPRYGILRGKEFEMLDG
YSFSADQEGLDEAYNNQAKAYRNIFDRIGLNYKVILADSGTMGGKNSQEFSAPAEVGEDIIAYTDGDYAANIEKAESKFT
GVQQTAAPAPIEKKATPGAHTVDEAAESLDLDPNQVIKSMLYIAKMSEDEYQPVLVLMRGDDEVNEAKVTNALDCEELEL
ATEEDAEKYLNAHPGSLGPVGVGEEVKILADNYVKVLVNMACGANEDGYHYINANIDRDFRVDQFGDFRNVKEGEIAPDG
KPLKFTPGIEIGHIFKLGTHYSSKLGAQVLDSNGRLTDVIMGSYGIGVTRLLSAVAEQNADENGLVWPNSIAPFDVHVIP
VNAKKEDQMAMADKIDQQLTEAGYEVLVDDRKERAGVKFADSDLIGIPIRVTVGKKAQDGIVEIKIRKTGETVEVKQEEL
VNTVGILLKQLNEEKNK
>SEQF1778_EEI65137.1 RIP metalloprotease RseP [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIITIITFIIVFGILVLVHEYGHYYFAKRAGILVREFSIGMGPKIWWKRKNGTTYTIRILPLGGYVRLAGADDEDQDELK
PGTPLTIQLNDQDKVISINASDKTTLFQGIPLQLVACDLEDGLWIKGYVNGDEDQLKVYSVDHDAMIIERDGTEVQIAPR
DVQFRSASLSARMMTNFAGPMNNFILSLVVFIILGFTLTGVPTNSNQLGQVNAGSVAAKAGLKANDRIVKVNNQKINNWT
DLSTNISNKPNKTVSVTYERGNKTYHTKLTPKAVERGHQKVGQIGIVEKQERSLAARLKFGWQQFIQAGTLIFSVLGHMV
THGFSLNDLGGPVAIYAGTSQATSLGINGVLNFLALLSINLGIVNLLPIPALDGGKLLLNIVEAIIRRPIPEKAEGIITM
IGFLILLTLMVLVTWNDIQRYFIR
>SEQF1778_EEI65138.1 phosphatidate cytidylyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTRITTAVIALAIFIPLIIYGHWPLTIAAVALGMVAMSEVLVMKKMFVISFEALISYLGVALLILPDSWLDFLPSVATR
WFGFYILVVLLLLHTVIRKQRFTFDDAGVLTLAMLYIGMGFRYFIAARAINFQTLLYGMLIVWITDSGAYLIGRKIGKNK
LAPKISPNKTWEGSIGGTLAAVIILAIYCYFIPVGAGWVTMIFVTLILSIFGQFGDLIESSLKRYYGVKDSGKILPGHGG
ILDRFDSMLIVMPMLHLLGII
>SEQF1778_EEI65139.1 di-trans,poly-cis-decaprenylcistransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEEQLVFSKSKHDEINQQLDMERIPNHIAIIMDGNGRWAQKRHLPRVAGHKQGMQTVKKITIAASELGVKVLSLYAFSTE
NWKRPSSEVSYLMQLPVRFFSTFVPDLVKHNVKVTVMGDITQLPEATQKAVKDAMADTAHCTGMILNFALNYGSRDEITQ
AAKEIAEDVQNGNLALADIDEASFGKYLMSAQLGQFADPDLLIRTSGEERISNFMLWQIAYSELEFVPEHWPDFDEDSLR
SAIIAYQGRHRRFGGLKNQ
>SEQF1778_EEI65140.1 ribosome recycling factor [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATGKEILNDAKQKMAKSGDALQRTLADIRAGQANASLLNSVKVEYYGAPTPLNQVASITIPEARQLLITPYDESVLEEI
EKAIYASNLGLTPQNDGSSIRLIIPQLTEDRRKELVKDVKAELEKAKVAVRNVRREAMDDLKKGNKNGDFNDDEFHDLEK
KVQNETDAGIKNLEDIANTKEKELMEG
>SEQF1778_EEI65141.1 UMP kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADIKYKRVILKLSGEALAGDKGFGINPPVLKDVAKELKEVHNLGVQIAIVVGGGNMWRGVTGAELGMERAQADYIGMLA
TIMNALSLQDALESIGVPTRVQTSIEMRQIAEPYIRRKAIRHLEKDRIVIFAGGTGSPYFSTDTTAALRAAEINADAILM
GKNGVDGVYSADPNKVKDATKFDHLTHMDIIEKNLHVMDTTASSLSMDNHIPLVVFNLNTSGNIMKVVTGQEVGTTIEGD
>SEQF1778_EEI65142.1 translation elongation factor Ts [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEIKAAQVMQLRKKSGAGIMDAKKALVASNGDMDKAMDYLREKGIAKAAKKSDRVAAEGLADIAVNGNTAAIVELNSET
DFVAASEPFKDLLKKVTKLISENKPANVEEALEIKTENGTLNDDIISTTQKTGEKVSLRRFTVVEKDDGDSFGAYLHQGG
QIAALVVLEGADDATAKDVAMHVAAINPEFMTRDDVSQERLDHERAIFKEETLNEGKPEKIVDKIVEGRLNKFLSQICLA
DQDFVKDSDQTVEQYVSSKNGKLKSFIRYEVGEGIEKKQDDFAQEVKDQMN
>SEQF1778_EEI65143.1 ribosomal protein S2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSVVSMKQLLEAGVHFGHQTRRWNPKMEEYIFTERNGIYIIDLQKTVKLIDTAYNYMKDVAANDGVALFVGTKKQAQDAI
EEEAIRAGQYYVNHRWLGGTLTNWKTIQSRIARLKELKKMSEDGTFDVLPKKEVAVLTKQREKLERFLGGIEDMPRIPDV
MFIVDPHKEQIAVKEAQKLHIPIVAMVDTNTDPDDIDYVIPSNDDAIRAVRLITSKMADAFVEGKQGQDDAQQETADDNA
ANETVSEDSLKNLKNSVEGKED
>SEQF1778_EEI65144.1 4-phosphoerythronate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIYMYGVYQDEVPYIEEWQEEHPEVTVDSTTKLLDESTVNLSKGSDGVVVFQQKPYSDEALRQLAFNGITKMSLRNVGV
DNLNHELVRELGFQITNVPVYSPAAIAEFSVTQALNLLRRTKEFYLKLAKGDYNWAPHIAKEMNKQVVGIVGTGNIGSTA
AKIFAGFGAKVIAYSRHQNKELEGIVEYVSLDELYKRATIISLYLPHVPATDKMLNEKTFAMMQDGVLLVNTARGPLVDE
KALIEALNSGKVGGAALDVMTGETKIFNQQIDFQEVDYNEFKDLVDRPNVLITPHIAFYTDQAIKNMVKMSLSANLDLIK
TGTSDKLVKF
>SEQF1778_EEI65145.1 GIY-YIG catalytic domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASEKYYIYVLYCADNSFYCGFTNNVKRRFHTHQTYQGAKYTRVKKRHPLKLIYSEEFESKHDALSAEYYFKHQTRRQKE
KFLLDHGVNLLKLRRN
>SEQF1778_EEI65146.1 hypothetical protein HMPREF0534_1550 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEDIMENRNILKKDERIDQLYSQDVRIIQNPHYFAFSLDAVLLANFVRPNHRQKLKIVDLCAGNGAIGIFLHDKLSGTFT
EVELQPQIADMAERTILLNDLQDRYTVINDDIANVNDYISKDSIDIVLCNPPYFPVTAQSQKNPNKALAIARHEIATDLV
TVVKKMSGLLKMNGHGYLVHRPDRLGEILQVCQENRLAPKRIQFIHPKPDRDANILLLEVIKDGRPGGVKVVPPLIVHGA
DNEYTPAVQELLYGK
>SEQF1778_EEI65147.1 Acyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSIIFVLARSTFFRHTEERKLNFVIDWKIDMLYTFLVKIVNPFLNLINGRPKIYNRENIPEGNYIIIAPHRTWMDPVLL
ALAVWPKKFSFMAKKELFKNPIASKFLKALNAYPVDRKNPGPSAIKKPVTILKKTDLSTIIFPSGSRYSSKLKGGATVIA
KMANVPLVPAVYQGPLKFGQLFTRKPRQIAFGKPIYIDRKQRLTPEVQADLEKQMQDAFDQLDRQIDPNYKYIVPPKPKN
DEF
>SEQF1778_EEI65148.1 hypothetical protein HMPREF0534_1552 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGMTIMLMILALLVGLVIGFFGARKYMENYLRNNPPISEEMLRTMMLQMGQKPSSRKLHQMMQAMKAQAKKSNRK
>SEQF1778_EEI65149.1 hypothetical protein HMPREF0534_1553 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIMAESKEQDALLKRINELAHKNKEEGLTEEETKERDRLRKEYLKNFREAMRSNIEMMRIFDKEGKEVTPEKVREIQRK
KGLRDD
>SEQF1778_EEI65150.1 repressor LexA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKVAKNKQMAVLNYIHKQVEDHGYPPTVREICSAVGLSSTSTVHGHISRLIEQGFLQKDPSKPRALEITPKGLDILGVK
PIQKEIPMLGVVTAGQPILAVENATEFFPIPPSIQDNNDLFMLTIRGTSMIKAGIFNGDQVIVRKQSTAKNGDIVIAMND
DNEATCKRFYKEKTRFRLQPENDTMEPIFLDNVKILGKVVGLFRDHIF
>SEQF1778_EEI65151.1 hydroxymethylglutaryl-CoA synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRIGIDKMAFATTNDYLDLVELAKERGVDPNKFTIGIGQDLQAVVPPTQDIVTLGATAAKKLLTPELEKNISTVIVATES
GIDNSKASAIYIKHLLGLSDFTRTVEMKEACYSATAAIQFAKGVVALNPQETVLVIAADIARYGLNTPGEVTQGAGAVAM
LISQNPHILTLEDTTVAYSKDIMDFWRPLYATEALVDGKYSTNVYIEFFLQTFTRYRQLTGRELADFAALTFHMPFTKMG
KKGLEGLLKDRNDEVAQRLRTQLTASQLFSRQVGNLYTGSLYLSLMSLLQNSDLRAGSRIGLFSYGSGAEGEFYTGILED
GYEHYMNNIQEELKHRHQVSVAEYEKLFNSQLGMNDGDIEFDVTNDPSPFVLKGQKDHQRIYEAK
>SEQF1778_EEI65152.1 ribonuclease HI [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVKKYYAVKKGRHPGIYKTWAECQKEVNGYPNAKFKSFLTLKGANEWLQATGNIVPSTKAVDYSDNILVYTDGGSRNHGN
KLGQHVKADDKAAWAYFIQTKDQAHTGTAGEFGATNNKMEITALIQALTKLLELGLQDQPITAILDSHYVLDPIMKGWLT
NWQRRGWLTAGGKPVANQKLWEEIVTLLPQFPNLHFDWTKGHATNAGNNKVDELLNKTMDQL
>SEQF1778_EEI65153.1 malate dehydrogenase family protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRIQATDERHYLVEVFTKLGFNQDDSQLLADTLVDADLRGISSHGIQRLAWYRRMIKEGTIIPQNKAKIIRELPGSVLVD
ANQNMGQLATVLATQ
>SEQF1778_EEI65154.1 peptidase, C69 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQNKDACTSIMVGKKASLDGANYIARNEDRVKAIEPKRFLVKPAVKGRHETYVSPYNKVTVALPEERMRYTSTPTLDQTA
GPNEEDGINEANVAASFTESVYANDRVLAYDPYVKNGLAEDSLCTLVLPYIHSAREGVEYTGKLIAELGSAEGNGMQFAD
ADDIWYMEVVTGHQWVAVRIPDDCYAVTPNQVAIEDIDFDDPDNYMWADGIQEFVEEHQLNPDHDRWDFRHIFGTSTQKD
RHYNTPRTWFAQRYLSPNASLGQRPEDSEMPFIRKAEFKIANEDIQYVLKSHFNETPYDPMGDAPERKTYRAISLSRTAQ
SHILQVRNLNKYKTSIHWIELGVPAFNPYVPFFANADDTDESYRNVPEKMNLESAFWLNEALAEVVESHYQEFMEKDEDY
QKELNEWARRKIAQVDKEAASLERQALTDYLTGQNHEIATHYNERTKALFFELLTEGCELSKMSFKMDPNL
>SEQF1778_EEI65155.1 argininosuccinate lyase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPIKRMWGGRFEEAGDQLVNQFNASISFDQEMAQEDIEGSLAHVKMLKETQILSADDADKIIAGLKKLRERLTSEGLPFS
IDNEDIHMNIEALLTEEIGPVAGKLHTGRSRNDQVATDLHLYVKKRLPIIINELKNLQAELVDKAAENVETIMPGYTHMQ
HAQPISYGHYLMAYFQMFQRDVERFEFNQQHTDLSPLGAAALAGTTFPIDRQLSAKYLGFAEPYHNSLDAVSDRDFALEF
LSNASILMMHLSRLCEEMIYWCSYEFGYLELADSYSTGSSIMPQKKNPDMAELIRGKVGRVYGDLFGLLTTMKGLPLAYN
KDMQEDKEGLFDAVKTILPSIKIMTGMIATLQVKKEAMEHATHHDFSNATELADYLATKGIPFREAHEIVGELVLKGLKT
GTNLVDIPLDEYKKISPKIEEDVYTCLQPKVAVERRNSYGGTGFDQVCQQIRDAKKILEGN
>SEQF1778_EEI65156.1 argininosuccinate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEDEIMSKEKIVLAYSGGLDTSVAIAWLKNKGYDVIACCIDVGEGKDLEAIKEKGLQVGAWKSVVIDAKRDFAEQFVLPA
LQAHAMYEQKYPLVSALSRPLIVQKLVAVANQYGATAIAHGCTGKGNDQVRFEAGIHALAPDMKIEDPIRDWHWSREEEI
QYAKDNGIPVPITKASPYSIDENLWGRANECGILEDPWAAAPADAYDRTVSIEEAPDTPTTIEITFSEGVPTAIDGEEMP
LDQLIMKLDKLAGSHGIGRIDHVENRLVGIKSREIYECPAATVLLAAHKDLEDLTQEREVAHFKPLIEQKMSEIIYNGLW
YSPLMKSLVAFIDESQAVVNGVVRVKLFKGNVICEGRKSPNSLYDKNLATYTSADEFDQEAATGFIKLWELPDKVYAQVQ
NKNKKKVKENTSDAY
>SEQF1778_EEI65157.1 linear amide C-N hydrolase, choloylglycine hydrolase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTVESTAKGLNVYDNPVGVLTNNPEFPRQLLNLSNYRSVAPANPANVFAPNVDLPVYSRGLGTHFLPGGMDSESRFVKAT
FTKMHAPVGNSEVENITNYFHILQSVEQQKGLDEVAPDTFEYTIYSDGSNLKKGIFYYKTYENSQINAVDMHKEDLEASE
LITYPVQNKQIINQQN
>SEQF1778_EEI65158.1 linear amide C-N hydrolase, choloylglycine hydrolase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MCTSVIYTAGDYYFGRNLDLEVNLGQEVVITPRNKTLEFREMPNLEHHYAIIGMSIVRDDYPLYFDGVNEKGVGMAGLNF
DGPAHYFPVQEGKDNIASFELVPYILAAASSVAEAKKLLSNANIANINFSDKLQAALDYC
>SEQF1778_EEI65159.1 YqeY-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLLQQLTSDMVSAMKNRDKETLNVVRMLKAAVQNEQIELGHDLSANEEIAVIAREYKQRKESLEEFEKAGREDLINQAK
NELAIVEKYMPKQLSKDEVTKIVKEVIDELNASSMKNFGQVMGSVMPKVQGQADGKLVNQVVKEQLSK
>SEQF1778_EEI65160.1 ribosomal protein S21 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKTVVRKNESLDDALRRFKRSVSRNGTLQEYRKREFYEKPSVKRKLKSEAARKRKNKRGRRY
>SEQF1778_EEI65161.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGFKHLLLLMVIAFPILCTPITALAANESSSTSSSSTNNPSQVASNDSVQKIKQKGTLVVGMSADYPPYEFTTKENGKT
KYVGFEVSLAKQFAKDLGVKLVIKNMDFDSLLVALETGKIDAIISGMNVTAERKKSVDFSNTYYSGDSYFLINKGDKDKL
VNVKSFNGKNVGAQNGTLQSTLISKEMPKANGKGLAKLSSLVIGLQSHKYDGILMDAATAKAYAANNSNLYAFNSKLPNT
AGGIAMAFPKGDTSLVNAANQTIKKVNKEQLINKKWIPEASQYMKSYKKQNTVLSYWRYFAKGIKYTLIITVVSVIFGFL
LGTLFALMRLSKNKFLHSIAVCYIEFLRGTPMMVQIMFVYFGIGAIIQSLPALLAGIIAVSLNSGAYVAEIIRSGIQSIP
LGQTEAARSLGMSKSETFRYVIMPQALKNIWPALGNELITLLKDSSLVSVIGVSELMYQTQLVQSATYKGVLPLFITMII
YFILTFTLSRILLYFEGRMKHAH
>SEQF1778_EEI65162.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPTKMIEIKNLQKKFKNNIVLKDISEHVDKGQVICVIGPSGAGKSTFLRCLNALEQPTSGQVLFEGQNLIGLSDKKLDQL
REKMGMVFQSFNLFPNMTVLKNITIAPVKVKNINEKEATKTAMELLEKVGLSDKAQQYPDQLSGGQKQRVAIARALAMSP
AVMLFDEPTSALDPEMVDEVLKVMRDLAESGMTMVVVTHEMGFAREVADQIWFMADGYIQETGDPEEFFAHPTSPRAQDF
LKKILK
>SEQF1778_EEI65163.1 aspartate--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRTNYAGDTNEQQVGQEVVLKGWVAKRRNLGGLIFIDLWDREGIVQLVFNEKENPEAFEIANAVRNQYVLEVQGKVQLR
AEKEINPDMKTGKVEVAVDKVKVLAKSETTPFDITDGVDASEDLRMKYRYLDLRRPEMMRNLKLRSKVASIVHNYYDNEG
FMDVETPDLTRSTPEGARDYIVPSRVYPGHFYALPQSPQLFKQLLMAAGVDKYYQLARCFRDEDLRGDRQPEFTQIDTEM
SFATPEDIQTVTEGLIKRVMKEIVGVDVKTPFPRMEWQEAMDKYGSDKPDTRFGMLIHDLSDIVKDSSFKVFANTVADGN
YVRAIRVPGGADKYSRKDISKYEEYIKRFGAKGLAWVKVTADGYNGPVAKFLNDQVAQINEEMDAKEGDLILFVAGSFHV
VSDSLGYLRRTIAEELDMIKPDQWNYLWVVNWPMFEYDEGFGKWIAAHHPFTMLNEEDLHYLEDGEDPHKAHAQSYDIIL
NGNEIGGGSIRIHDPKIQEKVLKALGYTKERAEARFGFLLKALTMGMPPEGGLAFGLDRWVMLLAQADSIRDVIPFPKNS
KAVEPLTAAPGKVSEQQLDDLKIEFDEKIDYKLDQDPDEQ
>SEQF1778_EEI65164.1 phosphotransferase enzyme family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MESPNTAWFKRLPLKNLTSVKPVSGGDINLAYQTTTTDGNRYFIKVQPNHSQDYFSHEINGLKAIGKVINTPTPLYHGEI
DGNAYLILNWLDETWGNQANLGLAVAKMHQQHNEEFGFMDNHQTKALVKDNSWNSSWLDFYINQRLEPEVQVASQRGRWN
KWRQEHYQQMVNKFTDYYQHHEVIPSLLHGDLWAGNFLFAGDHKPYLIDPDALFGDREFDLAMTTVFGGFDNSFYQAYSS
VFPFDDHLEERLSWYRFYYLCMHLILFGESYGGAVDQILSQY
>SEQF1778_EEI65165.1 D-tyrosyl-tRNA(Tyr) deacylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFTLSKELFDRRMLVRVVLQKVNHAAVSIDDEVVGKIGLGYFLLVGFAPDDTEEKLDYLVHKITNLRVFEDENGKMNKGL
RDVNGAILSVSQFTLYADTKHGNRPGFSQAARPEIAEPLYDLFNQKLVATGIPVETGHFGAMMKIDLENDGPTTIIYER
>SEQF1778_EEI65166.1 RelA/SpoT family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKEKELTHEDVQKIVSSYMNEEHVALVEKAYHFAEVAHHDQRRKSGEPYIIHPIQVAGILANLHMDPETVCAGYLHDIV
EDTGATLDDIKELFGSTIAMIVDGDTKLGKIRYKSNKEQMAATHRKLLLAMSKDIRVMIVKLADRLHNMRTLKHLRPDKQ
RRISNETLEIYAPIADRLGISTIKWELEDLSLRYLNPQQYYRIVHLMNSRRDQRVDYIDESIKLIKKAIADLDLGPNVEI
YGRPKHIYSVYRKMVTQHKQFSQIYDLLAVRIVVDSIRDCYAALGAIHTNWKPMPGRFKDYIAMPKTNGYQSLHTTIIGP
EGRPLEVQIRTHKMHEIAEYGVAAHWAYKEGKTNGIQQTQDSQKLNVVKEILELRSESQGTDEFMQGIQSDIFTDKVYAF
TPKGDVIEMPKGSGPLDMAYQIHTEVGNHTTGAKVNGRIVPLDYEIKNGDIVDILTSSSSAGPSRDWFDLVSTRRARNKI
RQFFRAHDREKNIEEGKQLLENELREAGYSPAELMTDEKCEEVAQETHYNSSDDMFAALGFGDLAPVGIRNRFTADIRQQ
VESDRQQAAEKAVLEDHQTLEKPNEREKQKQAKASSEGVIVEGVDNLLVRLSHCCSPIPGDAITGYITKGRGVSVHRDDC
PNIKAARKNGERIVSVYWANPNGDKTNYNADLEVQGYNRNGLLNDVLRSVNNSTRFLNSVNGKVDHNKMVTISLIIGVRN
LRQLQLIMDGLKNIPDVYVVKRIIR
>SEQF1778_EEI65167.1 hypothetical protein HMPREF0534_1515 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFMKKAWERLDKPLWLASILIGIVLTLVVDKLPFVTRVVMVEIVLILINGIFSIWSGYWIYKHQRKWGELFIFPILYLI
TAYFFMPRYTYYFALAYLALAYLSWAMRQQK
>SEQF1778_EEI65168.1 RNA methyltransferase, RsmE family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQRYFVNVTPANEVTLPSEAAHHLLKVMRAEVGTSVELVLADHCVYLATLSTTEPTATLKINQKLDADSELPVSVTLACG
IPKTKEKPELIVQKATELGADKIVFFDAARSISHWQGNKQKRKIERLQKIAESAAEQSHRNKIPQVEYSANLDQLLADYP
ATKRIVAWEESAKQGETSALAQQFNALNLGDSLLAIFGPEGGLTENEIAKMNEAGVVAAGLGPRILRTETAPLYFMAAIS
YAMELS
>SEQF1778_EEI65169.1 ribosomal protein L11 methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDWTAIKVITSSEAVEAVSYILTDMGAQGVQIEDAADFANLHEGKYGDHGEFIDPSSIPHRKNGAAVSGYFPQNVFVPEL
LPTIHQRVAKLRDYGLNPGENDVSAAIVDNQQWATVWQKYYHPLRVTDQLTIVPQWEEYEPADPKEKLIFLDPGMAFGTG
THPTTRLMLEALEKTVVGNEYVIDVGTGSGVLSIAAKHLGAGKVDAYDIDEVAVNSAKKNLALNPVAKDVKVGVNSLLDG
IHTQADLIVANMLAEIIVPLIPQAYENLKPDGKFLVSGIIDDKAPLIRQKLQEQGFIIDDEQQMKDWHGMITHKPIEVK
>SEQF1778_EEI65170.1 hypothetical protein HMPREF0534_1518 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRDNDLMYKKEYIRPMMTPQHVYVFRFGKHRLNNRVIVRYSHTWTGRLKINEIDVRLHHQHHPRIFLTESDLIDYLSHHL
EKEKKREQERPHISKVDNEND
>SEQF1778_EEI65171.1 hypothetical protein HMPREF0534_1519 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITIVSLLIAILICWLLWKIGGLTVKFIGLILLILLIGTLIHVLLWPAILLAVIILGAGLFTN
>SEQF1778_EEI65172.1 L-lactate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGRLFIMSKNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFAIVDIIKERTEGDAMDLEDATAFTAPKNIYSADYDTCKDA
DLVVITAGAPQKPGETRLQLVDKNLKIIKSVVEPIVKSGFDGIFLVAANPVDILTYAVQKLSGFPKNKVVGSGTSLDSAR
LRVALGKKLDVDPRDVIANIMGEHGDSEFAAYSSATVGGKPLLDIAKDEGISEDELLKIEDDVRNKAYEIINRKGATFYG
VATALMRISKAILRDENSVLPIGAPMNGEYGLNDLYIGTPAVVNASGVAKVIEVPLNDREKKAMADSAKQLEEVAKNGMA
KLQGNN
>SEQF1778_EEI65173.1 hypothetical protein HMPREF0534_1521 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEDRELVMFWLAGDHKLAIRKGLTSAILASELRKKGYKDKLIEDFLDDFARDLKNDQK
>SEQF1778_EEI65174.1 malate/L-lactate dehydrogenase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
QKIIEKAKKTGVAIAVIRNSNHFGTAGYYTRLALEAGLVGVALTNTRPLVVPTNATQAFLGSNAFAFGFPASPHPFMFDG
ATCVVSGGKIQVHAKKGEPLPGEWAVDKDRQVVTDAQEAEDILATAAFTEGEQKGGGVLTLGGNDEENSNYKGMGNSIVI
ELLTGILAQGSISADTVSGKHDFSQFVMVLNPAFFGDPEVLKKDATSMLDRIRQLEHIPGKEIWVPGDREYRLLAENKEK
GVTIDEKTYQEMKEIGTELGIDVP
>SEQF1778_EEI65175.1 hypothetical protein HMPREF0534_1478 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPNGDNLRWRLLLMTVTHQRIQRLVGIACLGALAFILMFFEFPVLPMAPYLKLDFSDVPVLLGGYIYGPVGGIIIAAIKC
LIHGMIHGFSPAELIGVTSDFISSLALLLPFCWVWRHHNWSNKRQAIIGIALGTVTLTVLMSLLNLWILTPLYMAVWNWK
STLPVSQLVAIGVLPFNLIKGLVVTIVYVIIAGRLRPWLDQHRMI
>SEQF1778_EEI65176.1 pseudouridine synthase B, ribosomal large subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MERLQKAMAEAGVASRRASEKLILQGKVAVNGKIVTELGTKVGVHDEIVVNGVPIHHEQHVYYLLNKPRGVISSAHDDKG
RRTVVDIIHDAEIDERIYPVGRLDYDTTGILLLTNDGALANKMMHPKYEVEKTYVAKVEGIVKNDELKQLRLGVVIDGRK
TKPAKSKLLNVDRAKKTSLVQLTIHEGRNHQVKNMFKAVGHPVTKLHRETYGPLNLYGLQPGEFRALKPEEVQLLKKK
>SEQF1778_EEI65177.1 segregation and condensation protein B [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNTKLTNQAQIEGLLFISGDEGITLGDLAKISGFMKPAVLTILQELKKKYEDDPTSAFILLESDQTYRLATKPQLAEVI
KHYFEVPLTVPLTKALLEVLAIVAYRQPITRLEIDDIRGVQSSGSLQKLMVRGLVDTHGRLDAPGRPFLYSTTPAFLNYF
GLSDLDELPPLPDQDELEMSNINGDIFLEALQAREERKDDN
>SEQF1778_EEI65178.1 ScpA/B protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKQVQPQNPFQPVIKVHDFEGPLDLLLHLIKQSEMDIYDIQISQITSQYLDYLHQMQSHQLEVAGEYFVMAATLMDIKS
QMLLPSPPVLDDELEVEELDPRQELVEQLLEYQRYKKAADRLKDKENLRQQEYTRPAMQVPREMVKSHVEPGIKLTDLQQ
AFAAVLRRQQLATPLVETVAAEKVSVGQQMNHVIEIIHDGPVRFEDLFEDLHTRDGLVTTFLAILELAKHQAIVINQGGL
FEPIILAEGSKSDEYETNQPSAD
>SEQF1778_EEI65179.1 hypothetical protein HMPREF0534_1482 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLVRYRKDYQKIALGLLSLVKGLRKDNRFMEEMDWALANDWPIFLWKDMDDSHFIGIVMIEIGDCYVLVRRLSFTPSERT
GYNIFSLLDGVHDQYPHKRLMGTLATQPIISMWERSNE
>SEQF1778_EEI65180.1 phage integrase SAM-like domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNEVAAFLAFLKDKRQLSDNTLMSYQRDLEQTVTYLEDRGIDDWQQVDHYLLIDLLNSLRQQGKANSTINRVISSLRQF
YKYMIRHHNLTINPMEMIDHQYTFNQPPAPVILTEKEIEQLLAVPDVSTPIGLRDRALLEIMDATGMRVSEVIALDLTAL
HLDVKLLQLTGKNERERMIPLSQPAVKWLTGYLNRGRPLLLRDDHETRVFLNAHGYPLTRQGIWKKMKEWVSEAKIKKEV
TPQTMRYSFAVHLIENGADVQLIQEILGYNAMKALQPYLQVSPQQLSANYMKYHPRA
>SEQF1778_EEI65181.1 hypothetical protein HMPREF0534_1484 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSALGKVVTAVMIDENDTDYFVQPDRNGQTYRLSKSESPQELHIGGQVRGFVYENEDHQLQMTCKHIPTIQVDHYDYGT
VVNVRRDLGVFVDIGLPNKDIVVSLDDLPSLKHLWPQPGDRLLMSLQVDDKDRLWGKLADDQIYQTISAAPDKCLLNHDT
YATVYRLKMSGTFVITDDYRLGFIHPSERDQEPRLGQRVKARVIGISSHGSLNLSLKPRAYQAIGEDAQMILTMLEHGIN
HRLPYTDKTDPSIIRDVFGISKGQFKRAIGHLLKEKLVKQENGQLILVKENQD
>SEQF1778_EEI65182.1 pyruvate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKTKIVSTLGPASTDVDTIVKLINAGANIFRFNFSHGDHPEHLGRIENVHKAEEITGKHVGLMLDTKGAEIRTTVQKEG
KINFEIGDKVRISMDPSIEGTHDKIAVTYPGLYDDTHVGGHVLFDDGLIDMVIDEKDDANKELVCHVLNHGVLGSRKGVN
APGVSINLPGITEKDSSDIRFGLENKINYIAASFVRKAQDVLDIRELLKEKNMEDVQIFPKIESQEGIDNFEEIIAVSDG
LMVPRGDMGVEIPAQNVPIVQKHMIKRCNELGKPVITATQMLDSMQENPRPTRAEVSDVANAVFDGTDATMLSGESANGD
YPVESVAMMNDIDIKAENHLWEFGTEKFDWDKSDVTETIGSAVANAAKDLDIHTIVAYTASGYTAKMISKYRPNADIVAL
TPNERVERGLMINWGVQPYVVDEMKNTDTMFDLAAKKAVELGFAKKGDRIIIVAGVPLGVPGATNMMRVKTID
>SEQF1778_EEI65183.1 DNA polymerase III, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDFTPLDVKSSYSLLKSPTRISDLVTTAKERGYKALALTDENVLYGAVEFYNAAKKAGIKPILGLRLVVALNETDGTKLD
LVFLAKNQRGYQHLMDLSTLQQTRKDKKIPLTIAQISSLLGELFIIIPPQSTVFSILAQPTSILTELANLGDDDSVLLGV
NSRLDDVQIDTLQQLSKQLSLPLVGTSPVDYLNANDLFASRVLQAIDAGVELKDPTIEARRRGQHYLHSKEQIVQDYNAK
GLSAAAQKTVEVAALCNVELQFRAPVLPHFKNQAGIPSQQYLRSLCIQGLKKRRVAPGKTIQQYQERLAMELKVIHEMGF
DDYFLIVWDVMNFAHQQKITTDPGRGSAAGSLVAYALAITEVDPLQYDLLFERFLNPERAQMPDIDLDIPDNRRDEVLQY
VHQKYGHQRVAQIITFGTLAAKQVVRDVSRVFNLPRYDMQRLIDALPHGLHVTLKDALKESQQLKNLLDDNPKFRLLIQV
AQQLEGLPRHYSIHAAGIVLSEQPLHEIVPLQDGSDGLLMTQFAKDTVEALGLLKMDFLGLKNLSIMDNILQMIRQEDPN
FDLQKINFNDPLTLQLFQRGKTEGIFQFESSGIRNVLVNLHPTNFEDIVAVNALYRPGPMENISHFTARKAGKEKITYPA
PSLEKILGPTYGILVYQEQVMQLASVMAGFTLGEADLLRRAMSKKKKATMEDMRTKFIAGATEHGYSAQVAHQVFEYIDR
FANYGFNRSHAVAYSMMAFEMAYLKVYYPAAFFTALMNAETNIEKLKRHVGDAKQFGVKVSGPRINISESSFLLHDGTVY
FGFSAIKGVRRDFVAAILEERQENGKFTDLRNFIARIPERWQKQELIEPLIYSGAFDKMEYNRAEMIDALPKLISGIELF
AGFANFDDPALQTAIDQRNEFPLLTRLTKENEYLGVYLSGHPVTQYYQLGQQLHATKIANLYPHSEATIIVLTNHVKTIY
TKREHREMAFVNGTDETGAIDITVFPKQYQQFKEQLETNKILIVRGRVEYREGRGLQLVANQLQDVKKVQQKRRKQRWVL
RILPSLDTEMVHRELNNIFNEYHGSIPVLLFYPANDKKILLDQKRWLKNSQKAKKALVAVLGQENVVLQQLNSNH
>SEQF1778_EEI65184.1 hypothetical protein HMPREF0534_1487 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLEYGMTSKGMTNMNFLLKNIVAGIWALILGEVLAYITSQLESMTPDYTLVGWCSVIMGLVVINCVDKITADANPSKNED
>SEQF1778_EEI65185.1 peptidase T [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIMSEEKYEGLLPRFLKYVKTETRSNPDSKTIPSDPKETAFLNELKDELISLGLSDVHINPQSSYLVATIPSNIDKDVP
TVGFIAHIDTADFNAHNVNPQIVKDYDGRSDIKLDKDGQYALTTTEFPSLEKYQGNTLITTDGSTLLGADDKSGVAEIVT
MAAYLMAHPEIKHGTIKIGLGPDEEIGTGADHFDVKDFGADFAYTVDGGPLGELEYETFNAAQAEIEIQGKDVHTGVAKG
TMINAIQVAIDLQNSLPAHDRAERTDGRQGFYHLYKFDGTVDHASMTYLIRDHDKQTFIERKHLLDRVVAGLNDELGADL
VTMNLYDQYYNLKDALKNHMEVVEIAKKAMENLDIKPDIYPVRGGTDGSTISYKGLPTPNLFAGGENMHSRFEYVSLQTM
ERALDTLLEIVRLTAEEDK
>SEQF1778_EEI65186.1 dinuclear metal center protein, YbgI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTGNQLIARFEKFANPQLAEKWDHVGLQIGNPDLPITRLMTTLDVRPEVVDEAIEQNVDLIFAHHPIMFHPAKNLDTRD
PQNAMYAKLLANNITVYAAHTNLDTANGGMNDWLADQLRLTNTVPLVPAGNDPISGEPVGMGRVGELNEPLTPRKFANYC
IDVFAIRGLRLIVNPLDQEREIKRVAVLGGAGQDFYQQALETGADAYVTGDVSYHFAHDMIANHLVVIDPGHHIEVVAAH
QLANLITQWKNENNWQFEVLESRVNTEPFTFITK
>SEQF1778_EEI65187.1 hypothetical protein HMPREF0534_1490 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFVDEKHLSARLACVASLVPAGARVADIGSDHAYLPAALVLDGKIDFAIAGEVVKGPYENAVREIKDHQLEGQVIPRLA
DGLAAIEPADKVDTITIAGMGGSLIASILEKDKNKLTGIKRLVLQPNVGESQLREWLMNNYYQIMNEKIIEEDNHIYEII
VAEPSVVPFRYSKYELDFGPFLLENKGPVFRKKWQEYLQREAHVIDQMQKAQQPPVKKINEINEFLSQVKEAIADDNR
>SEQF1778_EEI65188.1 aminotransferase, class I/II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPELSADLYGTVSHKLDALQPSGIREFNKEVSKIPGIIKLTLGEPDMATPEHVKQAAIRSIEEDDSHYAPQMGKPELLEA
ISDYIQNTRDVHYDPQTEIIATVGATEALDATLFAILNTGDKVVVPTPIFSLYFPLIEMTGATVVQVDTSADNFVLTPEK
LEEVLEEEGKGVKAVILNYPSNPTGREYPQEVLAGLAEVIKKHHLYAIADEIYSELVYGVEHYSIATMIPERTIFISGLS
KSHAMTGYRLGYVAAPAKIMANISKMHAFLVTTVTNNVQVAAAEALTNGLNDPLEFRKIYQHRRDLLVAGLKKLGFEMLT
PEGAFYLFAKIPAQFGTDDVAFAKQLAKEAKVGVTPGSAFGKGGDGYVRLSYASSDENLTEAIKRIGEFLDHLA
>SEQF1778_EEI65189.1 RNA polymerase sigma factor RpoD [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKSKKKDIVISNSANFDQQEYDTAVGKLIRNYKKQKQIEYDELTTKIAKPFELNADGIDNLLQNIEDAGISVVDENGDP
DPRALKATEKFSQSAMKDTSAPTGVKINDPVRMYLKEIGRVNLLTADEEVQLALRIEKGDEVAKQELAEANLRLVVSIAK
RYVGRGMQFLDLIQEGNMGLMKAVEKFDYRRGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRIQRQLLQ
DLGREPLPEEIGAEMDMPTEKVRNILKIAQEPVSLETPIGEEDDSHLGDFIEDQDATSPADHAAYEMMKKQLENVLDTLT
DREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE
>SEQF1778_EEI65190.1 DNA primase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKIPRNVIDEIRNSVDIGDVIGRYVQLHQAGKNLIGLCPFHDEKTPSFSVNEEKQFFYCFGCHRSGNVFQFLMELKHID
FVDAVKEIANDSNIKIPEQYVSVPAKPLNNENRQLFDLHDKAAKLYHHILVNTPAGQVALNYLKKRGMSEELIEQFGLGY
APDQRILKPFFQQQKVDYQLLRKSGLFSEDQQGELRDRFIERIMYPIKNGQGQVIAFSGRLIDTSKTNLPKYLNSPETPI
FNKRRTLFNFDVARKAARKDGRLYLFEGFMDVISAFAAGIENGIASMGTSFTEEQVAIIGRATRQLDICYDGDQPGQNAI
DRAISLVNDHRPNQLQVKVVQLPAGIDPDEYVQKYGPQQFNAYLTNKEETTTEFYLRFLRNGKNLDNQNELMQYLNQALK
VIAQVQVPLEEDMYLQRLAGEFKLDRQTLKTQLDQLRQQLGIHNQPWIKQQPSLARHQQFQQTSEEEQQKIKLSRTELAE
QILLRYMLYDREVWMHVTADHNFHFAHEKYQTLYLLAASYFSENGSYSTADFLDYLDESSLQGTLGQIENLNVDQEVDMR
AIDDCIHMIVEQTPLAAQIADKQAQLKEANSLHNTELATQLTIELVKLLKQQQRLKTEETN
>SEQF1778_EEI65191.1 glycine--tRNA ligase, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANTYLLEVGVEEMPAHVVTPSIKQLHERVEKYLKEQRITFDDIQEFATPRRMALLIHGLSDKQPDIDESVKGPAKKIAQ
DADGNWTKAAIGFTRGQGASVEDIEFKEVKGVEYVFVEKHIAGKTVAEVLQGLPTVITSMNFPTLMKWGYNNLQFIRPIR
WLVSLLNDEVVPFNILDVEAGRETQGHRFLGHPVEIAKADDYEETLNNDFVIADQTKRKNLIKDQITKIINENNWQVDWD
EDLLEEVNNLVEWPTAFAGSFDEKYLALPDPVLITSMKDNQRFFCVRDKDGNLLSHFISVRNGNTDYLDNVIKGNERVLV
PRLEDAQFFYQEDQKLTIDEYVERLKKVSFHDKISSMYDKMQRVAVIANVLGKQLNLSDEELADLDRAAHIYKFDLTTQM
VGEFAELQGIMGEIYAKLFGEKDDVATAIREHYMPISAEGELPQTKIGAVLAIADKLDSIMSFFAVDMIPSGSNDPYALR
RQAFGIVRIIADRGWNLPLLSIQSEIAPAFENAEINVSFDLNKNSDEVRSFFLDRIKQLFHGQKVRHDIIDAATDTRQND
IANILEAIQTIDDHKDDDNFKEDIEALTRVLRIAKKDKRPVSELVVDPNLFENPSEAKMHTAVSELIKENQQTVSENFAA
LRTLTPIISEYFDENMIMDKNEDIRNNRLAQLSILANQASLIGNLDNLIVK
>SEQF1778_EEI65192.1 glycine--tRNA ligase, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKKLTVQDIIFTLEQYWADQGCMLMQAYDNEKGAGTMSPYTFLRAIGPEPWNVAYVEPSRRPADGRYGENPNRLYQHHQ
FQVLMKPSPDNIQELYLGSLKKLGIDPLEHDIRFVEDNWENPSMGCAGVGWEVWLDGMEVTQFTYFQVVGELPMSPVAAE
VTYGLERLAEYIQNVDSVYDLEWADGVLYGDIFQEPEYEHSKYAFEESNQDMLLQDFNDYEKEAKRLIKLGLVHPAYDYV
LKCSHTFNLLDARGAVSVTERAGYLHRIRIMAKSIAKAFVEERRKRGFPLIHDEAVRQKTVEEYTKKAEKAKERAAKQAA
KKAQKGEK
>SEQF1778_EEI65193.1 DNA repair protein RecO [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MARVTTQFTGIIMYRQDYRERDLLVKMLTDKIGPAMFFVKNAKKRGFRMTADILPFTHGTYIGSLDENGLSFINTASDTS
QYKNIASDISKNAYVTYILALVDSAFNDGRSIGGWFNQVAAALDLIEKGLDGQIITNIIETQLLVAFGVAPIWDRCVVCG
RNDLALDFSEQYGGMLCQNHWSLDEHRLHLDRKTVYYLQQFATINLQKLNSIRINPATKRRLQQVLDTLYDNEVGLNLKA
KRFIRQMNKWEQNIGKLSMND
>SEQF1778_EEI65194.1 ribosome biogenesis GTPase Era [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNPNYKSGFVAIIGRPNVGKSTLLNYVVGQKVAIMSNVAQTTRNKIQGIYTSPEAQIIFIDTPGIHKPSTKLGDFMEKS
AMSALDEVDAVLFVVSATEKRGPGDDFIIERLKKVNQPIFLVVNKIDQINPNDLPEIVDQYKDTLPFKGIVPISALQGNN
VNNLINDIIKILPNGPQYYPADQVSDHPERFVIAEMIREKVFLLTRQEVPHSVAVDVTSIKREDENHIHISANIIVERPG
QKGIIIGKGGKMLKKIGTMARQDIEKLLGDKVFLQLWVKVVPDWRDKSAMLKDYGYRNKDY
>SEQF1778_EEI65195.1 prokaryotic diacylglycerol kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDSRDKHQTEKNHHLIQAMRHAIDGIIQVLREERNMRYHLLAACLAIIMSALLQISAMEWLWILLAIFVVFTSEFLNTVT
EAVTDLIVDHHYELNVKKAKDVAAGGVLISAIFSVLVGLIIFIPRILAIIR
>SEQF1778_EEI65196.1 translation metalloprotein YbeY [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMDLEIFDQTTAQLPNEQLEMVRDLLQYAAKELSLSENTEMSLTFVNNPEIKKLNAQYRNVDRATDVLSFAAEEAGDETP
IIMDPQMAAEIPVNLGDLFISIDKVAEQAKFLGHSVDRELGFLAVHGFLHLNGYDHEEPADEEKMFKLQREILDGYGLTR
>SEQF1778_EEI65197.1 PhoH family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGEQKTIEQTFQIESPEIEVGLLGTQDKFVSLIEQGMDVEIRPFGENLKVSGQEEDVKLTIDVFRALISLLNQGIRIHST
DIVSAMKMAHRGTLEYFADLYSETIIKDRRGRAIRVKNFGQRQYVNAMKHNDITFGIGPAGTGKTYLAVAMAVASLKRGE
VERIILTRPAVEAGESLGFLPGDLREKVDPYLRPIYDALNDIFGADHTQRLIDRGIIEIAPLAYMRGRTLDGAFVILDEA
QNTTNAQMKMFLTRLGFGSKMVINGDVSQIDLPHGTRSGLVNAQRILNNIKSIKFVKFSAEDVVRHPVVARIITAYKDQT
SKRLAEKDKDKETKEEK
>SEQF1778_EEI65198.1 biotin--[acetyl-CoA-carboxylase] ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVRMVHSTAQKILWQLLSAPDSWISGNDLAKRFNISRESVWKAINGLRKNGNNIESRRNLGYRFTGNSRLSADIIDFYTH
NHFKNRLYVENQVSSTQSIAKAFLSHHQVSAPTVFIADHQTAGYGRQGRSFYSPAATGLYFSMILPSPTDRPLQAGLMTT
TFAVLIVEVLKQFFPAQDFRYKWVNDIYLNHKKVGGILTEAVVDLELRTTASLVVGIGLNITTKEFPLGLKNKATGIAPA
DRNLLVSRLIETIANNYLDYDNPQYLEQYRQDSMILGQKVDLVVNGEVIAGTAKKIENDGALTIRLADGKTKTFNSGEVV
KVNFEK
>SEQF1778_EEI65199.1 BioY family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIREKISLSIYEMTVVAMMIAIIVILGAVPGIPVGVIPVPIVLQNIGIIIAGELLGPRLGTFAVWLFLFLVVLGLPLLSG
GRGGMVTILGPTGGYIFAWLFVPLLIGFSLKLSWHYGMTQGITEFLIVWLWGVIFVEGVGAIWLANQLHTTLISALASNV
LFVFGDTIKALIAVSITRRLRHIKVFC
>SEQF1778_EEI65200.1 IS66 family element, transposase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAESLKKENEALRAQLKKAQEQLEQQAITIKQLQEIIFGKKTEVLEQVADGQLSLFDPVDDLNLDQEITEVVKTTTTKIV
RHRPAKKQLTRQEFLDQLSQVEEVVSLKTTTCPDCQHEMAHIGKRLARREARLKEPELYCANLYEESYKCKHCSQDGNDK
LVTSKAPMALLPHSYFSSSIMAFIAYLKFNLALPFHRQESFVQGLGLPVSAKQMASNIIKVSQTYLELLYQYLSNTVRQE
PVIHMDETPFKVVDSPKSQDYFWVTRTTKEFAQHPVVVFHHANTRSGRIIGQIVGNNYPGIIMCDGYKGYSNQLYPQAKF
GSYLVHIRREFVKLVKALPKTMKASKAQQAITLLSQVFHSENQLSYQTANEKLVQRQIHVKPLMDKFYNYISQISQPIGQ
LRKAIQNAIQLKSRVYCVFANGQLPLSNNSVEQSIWPSTLIRKNCLFAKTEEGAKANAVYYSLVETAKLNQLNVQRYLEY
LFDHLPESNCQDLAAFLPWSKNVQEECRE
>SEQF1778_EEI65201.1 IS66 family element, Orf2 protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLINWQAPEHVYLVCGKTDLRKGIDGLAIVVAENFGLDLYNNSLFLFCGSRNDRFKALYWDDEGFILLYKRYENGSLRWP
KNKSEVKELKPEQLNALFTGLSPFPERRIHTIKPGNLY
>SEQF1778_EEI65202.1 IS66 family element, transposase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KVAELKFNLALPFHRQIKLWQAIGLQVDARLLAANIIKVSQTYLEPLYDYLQRLVKKEPVIHMDETPFKVIAESNGNGYF
WVTRSTKEFSKHQITMFHYYNTRACKTVGQILGQQYSGVIMCDGYGGYSDRLYPQAKFGSCLVHIRREFYRISCLLKKEQ
LKNSKAYQVLQLMRPVFHEEKQLAYHTHMEKLVQRRLHVKPLMDKFYAYLENINFPQGRLRAAINNALKLKTRVYRIFED
GRVPLTNNPVERAIRPSTLIRKNSLFAKSTAGAQANAIFYTLVATANQNHLNIYKYFKYLFDHLPNRKDEGLEAYLPWSK
EVQTECHK
>SEQF1778_EEI65203.1 hypothetical protein HMPREF0534_1444, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEKKGFRDPKKKETEKLVHKLVEAIDEHPDKVNNYYDLGSLL
>SEQF1778_EEI65204.1 phosphoglycerate mutase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKVYLIRHGKTQWNLESRYQGANGDSPLLKDSYREIELLASSLQRIPFEHAYTSPLKRARVTAQALLNHLNPEIPLTID
SRLKEFNLGKMEGMHFEDVAAKWPEVLKNFRHHPDKYDESLVEGESFLEVIARFRAAIEEYCRQYPNGNILVISHGAALN
AAINALIGTPLAHLKDRGGLSNTSTTILITNDGRHFELEKWNDTSYLHKSKVDPTDTI
>SEQF1778_EEI65205.1 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADNSHTRVVVGMSGGVDSSVTALLLKRQGYDVVGVFMKNWDDTDENGVCTATEDYKDVAKVASKIGIPYYSVNFEKEYW
DRVFKYFIAEYKKGRTPNPDVICNKEIKFKAFIEYANQLGADYVATGHYADVKRDENGRMHLMRAKDQHKDQTYFLSQLD
YKQLDKVMFPLAGYTKPEIRKIAEEAGLATADKKDSVGICFIGEDGHFREFLSQYIPAQPGNMETLDGKVVGQHMGLMYY
TIGQRRGLGLGGNKESNEPWFVIGKDMKKNVLYVGQGYENSHLYATHLEASDIHWVDDVVSRYGRDFHCTAKFRYRQTDV
GVTVHLSEDDQMVTVEFDDPARAITPGQAVVFYDGEECLGSAIIDRAYSHDRQLQYV
>SEQF1778_EEI65206.1 hypothetical protein HMPREF0534_1447 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGTIKMEFTKTVQISGDKDKYTISPEIKKYALLDLGFEQTNRGNFEYLGSLDTDNPFKPVARLRILINSDLDGFKMETLS
GNGLRKINIFNHQRAAEFIQQYHYILDEMVARQIFTK
>SEQF1778_EEI65207.1 aminotransferase, class V [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEIYLDNAATTPMTPEVIAEVTKQMQESWGNASTGYSYGRHAKLVMEDSRHVLAQSINADDNEIIFTSGGTESDNTAII
QTAFKRQNLGKHIITTAIEHEAVLKPLHFLEEHGFEVTYLPVDENGNISIDDFKAALRDDTILVTIMMENNEVGSQMPIH
EIGEILKDHQAWFHTDAVQAYGLLPIDVKADHIDMLSTSAHKINGPKMMGFLYRRDGISFPSFIKGGDQETKRRAGTENV
PGIAGFAKAVELNTPEVKEERRDRYYAFKQKIVNALKENNVDFEINGQINKTHVLNLWFKGISTYVIQTDLDLAGIAVSG
GSACTAGSIEPSHVLTAMFGADSPRISESIRISFGGLNTEEDIDQLIATIVRTVENLKKINGDN
>SEQF1778_EEI65208.1 MTA/SAH nucleosidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDKKEKNMRFGIICAMPEEIKELTAKLSDKQEKEIGGKSYLFGKINNQDVVLVESGIGKVEAGITTEHLITDCEADVVI
NSGSAGGIGEGLHVGDIVISTETAYHDVDATAFNYRYGQLPGKEPRFKASDQWGHALEKAGEKTGLNVKRGLIVSGDQFI
ASSEAIKEILNNFPDALSSEMEGAAVGQVATDHQIPYVVVRAMSDTGDEDAGVSFDDFIIDAGKRSANMLLQLFADLDK
>SEQF1778_EEI65209.1 hypothetical protein HMPREF0534_1450 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNKQQDEQQSRMSRSQYRQQQRQTEQPNEAAENTTDRPYSREAVASQRHDETVAEKTARLKRRLNIAIIALIVAIIIVY
LILFYVG
>SEQF1778_EEI65210.1 hydrolase, NUDIX family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEFEERPISSKTVFHGHLIDVEVQQVITPHGNKTQREIVHHAPAIAILALTADNKMILEKQWRAPIAKTTLEIPAGKLDQ
RDADNALHAAKRELNEETRYEATSLKKISSFYTSVGCMDEYMTLYLATGLKRVSNELPQDQDEQLMLKEVTLPQALEMID
QGEIEDAKTIMAIYYWQGMNNRG
>SEQF1778_EEI65211.1 cold-shock DNA-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLVAWYFIMELVKMLKGKVKSFDEQKGWGFITVPHEGEIFVHYSGIEGTRRRILHPDEEVSLVIVQGQKGPQAAHVRVL
R
>SEQF1778_EEI65212.1 isoleucine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGSFFIIKIQELMKGVVTMRVKDTLNLGRTKFPMRGKLPVTEAQREQLWEENKVYELRQKLNEGKPTFVLHDGPPYANG
NIHIGHAMNKISKDFIVRYKSMSGYRAPYVPGWDTHGLPIEHQLTKSGYDRKKMSLTEFRDLCREYALKQVDKQRTDFKR
LGVSGEWDHPYLTLDKEFEAAQIRVFGEFAKKGLLYQAKKPVYWSWSSESALAEAEVEYHDVVAKTAFFVEQIKDGKGRL
DNDTYLVVWTTTPWTVPASEAVAVNPKFDYSVVKPANDDRKFVVATDLLEKLAEKLGWEDYEVVDHLMGQELEGMTTQHP
YLDRDLLVGLADYVTADAGTGLVHTAPGYGDDDYNFGKKYDLPIFAPINDQGVLTKENGEGFEGVFYQDADDVSLQKLEE
NNALLLQEPLQHSYPFDWRTKQPIIFRATDQWFVSIEKMRQNILDALEDVKYHPEWGKVRLRNMIKDRGDWVISRQRVWG
VPLPVFYAEDGTPIMEEETINHVAELFAKYGSNVWFEREAKDLLPEGYTNEHSPNGKFTKETDIMDVWFDSGSSHQGVLA
ERDYLTYPADLYLEGSDQYRGWFNSSLITSVVCSGHAPYKEIVSQGFTLDKRGNKMSKSQGNVIDPNKVVQQMGAEIIRL
WVMSADTSADVRVSMGTFQQISEAYRKLRNTFRFLLANTSDFNPEENTVSYEKLQSVDKYMLVKLNHFLKTMREDFDNYD
FLDAYKALINFVNNDLSAFYMNIAKDVLYIEAENSEVRRSMQTVFYDILLTLVKLLTPILPHTTEEVWSYMNEPEDFVQL
TEIPDPRTFAGEEELLSKWDDFMEVRSHVLKSLEEARNAKLIGKSLEAQVDLYLTDDQKQLLDSLNENIQLLLGVSALHV
HPADEAPADADQYNDGVAVKVTTANGETCARCRMVKEDVGSDLAYPELCARCAAIVRENFPETAEDGLEE
>SEQF1778_EEI65213.1 DivIVA domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLTVDQINNKQFNTKMRGYNPKEVQEFIQEVSQTVQQLITENNNLQEQVRANDSKIKYFADLKDSLNKSILVAQEAADK
VKNNAKREADIMIREAQKQATDIVSEANDKSNQVIEDAANSAKKLTSETNDLRKQTRIFRQRLQVMLESQLEVIKSNEWD
KLLENDDLSKYDEIEKILGSRLDSSSPTSVESTATTASEEQPVESEQPVASAEQAEEESTPVQPTAVNDDKGSDTPETVV
VFPDNNK
>SEQF1778_EEI65214.1 S4 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEDNIKQHFRPDEATLIDQANDWVATAESQYRPVLTPFLNPRERFIIQTIVNRNNNVKITMYGGWQGAEMQRVLIYPPY
YEPSIEDFALQALEINYPVKFSELHHRQIMGTLIGEGMERNAFGDILTDGAHWQVIVTKPMAEYLRKNVEHVGQIKVKWI
PIATEAVVTPKEEWVPIVTTVSSLRLDVVIAAGFNYSRNRAKQLIEHGQVRLNWEEIDRPDYQIVVHDLISVRHGGRLRI
DMTNGKTKKDKERITISVVNA
>SEQF1778_EEI65215.1 YGGT family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIAFLLWALNQLVDAYILVIVVWCIMSWFPNARNSRLGDIINRLVEPYMHWFDFIPPIGGISFAPMIAILVLYFVQAGLA
QIAAII
>SEQF1778_EEI65216.1 hypothetical protein HMPREF0534_1457 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDFLIRLFLFRPIKEGNTMAANFLKSLFGEEDIDEQDGLYETSEQVSTPANTSNKVVSINSGRLNQMSQISLYEPRLYAD
VKQIASQLLEGHAVIVNFTQMDTNVAARLVDFLNGTVFAIDGEMKRIGKEIFLCTPKNYEISGSLTSNLKNDGDKF
>SEQF1778_EEI65217.1 cell division protein FtsZ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNETFANDNQFAEAQIKVIGVGGAGGNAVNRMITEKVQGVDFIVANTDLQALNNSQATTKIRLGPKLTKGLGAGSNPEV
GEKAAQESEEQIKKALEGADMVFITAGMGGGTGTGAAPVVAKLAKDSGALTVGVVTRPFSFEGPRRARYAAEGLEKLKSN
VDTLIIVANNRLLEMIDKKTPMMEAFKEADNVLRQGVQGISDLIVTPGYINLDFADIKTLMSNQGSALMGVGASTGENRA
TEATKKAISSPLLEVSIDGAQHVLMDITGGKDLSMFEAQEASDVIKQAAGTNVDISFGMSLNESMGDEVRVTVIATGIDK
KKKIQQQKPAEKEAPRVTRSIPQEEQPKQRDPFDGWNDPIADTSNQSRNSDNEFSHVTKPEFNVFNDDAANTDDNDDTNL
STPPFFKNRRK
>SEQF1778_EEI65218.1 cell division protein FtsA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNSEVYVGLDIGTTSIKALVCESVKGQLKVIGVGVERSAGLNRGVIVDIDKTAQAISAAVAQAEEKSNVEIQSVVVGLP
ANYLQMQRVHGMITIATRGQSREIVNQDVIDVAREALTQSIPPEREIIDLIPTEFTVDGFSGIKDPRGMVGVRLEMKATL
YTGPKTIIHNTKKAVQQAGYDIKDFVITPIATDFNLLNDGEQDFGTVVIDLGGGQTTTSIIHDHQLKYTYVDPEGGKYIT
KDISTVMNTSLKNAEQLKLNHGYAMASLADEDVQVDVDVVGQNDPVQYSEQYLSEIIEARVRQIFDRIQDKLKAIHAPEL
PGGVVLIGGVAALPGVKELAEQYFTGNIKVNVPEQMGIRHPRYAVSLALGMYENQLSDIDRLIKQTVQRIDTIKSPHEEK
RQVVNQPRQQWTEKSDKLQRSQREAQQQPVTEEPAPKKKKQNGLSNRFKNIFNNLFD
>SEQF1778_EEI65219.1 cell division protein FtsQ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDDRSAIEHHKYSQRLTELERRSAAAQQRQQKKKPPKMHVGNKIRGIKIKRYVSNGERVLKLVVLFSAILLFMLYIISP
LSKITTLHVTGNHDLTKEQVEKNANIYPGRFIWGVYLARHQLTKQAIRKNPQIKDLRIKVTGPQSLQISVKENALLGIAV
MNNDTYAVLADGQLQRTKNADNGIAYKRFDGHKKVLATTAAQLGKLKLAIRNGISSVSYQPTKEYPDRVIIYMRDGNTVY
GDLNTIGDKMGYYPAIAASMKNKGIIDLQVGAYSYDYGSKDK
>SEQF1778_EEI65220.1 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRLLVSGGGTGGHIYPALALIERLKQVDPDTEVLYVGTTRGLENKIVPDAGIELETMHMQGFKRSLSLENFKTIYLFLSS
VHHAKKIINEFKPDVVLGTGGYVSGAVLYAAAKKHIPTVIHEQNSVVGVTNKFLSRYVDQIAIAFEAARSQFPADKVTMA
GNPRAQQVAAKKDSDFSWTSYDLKDDIPTLMIFGGSQGAPKINKTVVDAIPEFNKRPYQVIFATGQKRYDDVKKQLAENN
IRPADNVKVVPYIKDMPAKMPRVAALVSRAGATTIAEVTALGVPTILIPSPYVTANHQVKNAQALVKNNAGLMITEDKLD
ARALLTQADKIMEDEEVRKEMAHAAEKMGRPDAADRLIKILHKAIDEHEK
>SEQF1778_EEI65221.1 UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKIDEYQGKKVLVMGFGISGINAAHLLVKLGANVTANDKATPKNNDIVDDLKADGIKVITGDNPISLANEGFDVVVKNP
GIPYDNPLVAAFVKQGTPIITEAELGWQIFDGHLVSVTGSNGKTTTTTLTQLMIAENAKYQVKYAGNIGISFSKIAEDLG
PDDTLVTELSSFQLLGAPTIHPHIAIITNIFSNHLDYHKTRENYINAKLNITRNQTKDDFLVINWDRDEWQKIAQRSQAT
IVPFSRLNKSHEGSYVEDGMIYWRGQEVMPTKDIRLIGPQNVENALAAIAAAKLSGVTNDAIKKVLTTFSGVRHRLQYVM
EYQERLFYNDSKSTDIEATEVALQGFDRPVVLLAGGLDRGYTFERLVPYFKKHVKAMIVFGECKDKMKDAGNQAGVPVIE
SENAITAVPEAWKLSEPGDVILLSPANASWDQFPSFEVRGDKFIEAVEKLTGKKEQ
>SEQF1778_EEI65222.1 phospho-N-acetylmuramoyl-pentapeptide-transferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFLSAVLTILSSFLITFLLMPSLIKYFRAKKEGQQIRKEGPTWHAKKAGTPTMGGLLFIFSAVVTILWVAAWQGLITNT
LWALLFVLVVYGLIGMWDDSIKIFHHQNEGFKPWQKALCQVLAAMVFTVIYQHEGFQMGFGTTQIGWLYGLFIIFWIVGF
SNAVNLTDGLDGLVSGLSIISFAAYLIIALVNLNQPGYPEIALFCLAMIGTLLGFFPYNHKPAKIFMGDMGSLAIGASLA
AVSLLLHHEWSLLVIGIVYVCETASVILQVASFKTTGKRIFKMTPIHHHFEMSGWSEWKIDIVFWLVGLVAAIIAATTIL
LVG
>SEQF1778_EEI65223.1 penicillin-binding protein, transpeptidase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKKPQRTKNRGHRENRGTFGKWLFLITVGLFTLFIVRFAYIAINKDVQHVNLRSQAEQIYTQQRIIQARRGDIYDSEGN
PLATDTSKYTLYAVLDRTQKSSDGKPLYVKDRKKTAKVLSQYIDLTPKQIEKILKPKGQAYQVEFGNAGSNLSVSTMQKI
KNRHLPGINFIATPARQYPEGEFASQIIGMATPKVKNDNGTEETNLVGQLGLEGYFNKQLTGINGLRKDKQDVYGYQIAN
SKQVTKKAVNGDNIYTTLDSQTQHFLENKVNKVYKSSNANAMTAVVMEAKTGKIIAATQRPTLHAENNPVWRNMLVQDAY
EPGSVMKILSLAAAIDTGHFNPNATFNSGTWAMGGGKITDWSSSGWGTISYKDAFDMSSNVGFAHVEQDMGAETWMKYIK
RFGLLKKVNVIGMSNEVNGYTSFKGILVQANTAFGQGITVNVMQMMQAFSAIGNNGKMMKPYIVSKVVDGNSGKTIQKVK
PKVVGHPIKASTAKKVLGYMQGVVYDQKGLGHDYQIKGYRIAGKTTTAQIGGAHGYSTGDTNYLYSFAGMAPAKNPKYIM
YVTLRQPQNLKKTATKQIASVFNPTMKMLLSQQKVAEKVKKKVITMPNVVGQASDEANKELSGKGMQVIVVGSGKKVKQQ
SAVPDEQVLTDQHVILDTGGEYKMPDVSGWSSADVQQLAKALKLKVKENGNGYVTQQSILPDTTIKRGTTLTVQYEAKN
>SEQF1778_EEI65224.1 cell division protein FtsL [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVSNAARQLAGEQQPQQAPRKKTYQQLKISPSPVRWSKFERSLVAVGSLITLCLMISLLSTKISINNQQRRLQDTQTQIT
KAKSSNTSLQQEIAELTTQSHLKSAAHKYGLSDKNSNVRNVNK
>SEQF1778_EEI65225.1 S-adenosyl-methyltransferase MraW [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEFKHVTVLLKEAVAGLNVQPTGTYVDATLGGGGHTQAILQQLVDGHLYSFDQDQTAINYNKEQLKTAIEQQKLTLIED
NFRNLKAELDSYNVKHVNGILYDLGVSSPQFDDAKRGFSYQHDAPLDMRMNQEQKLSAMEVVNEWSYERLVKILYRYGEE
KFAKSIARKIEQRRKIAPIKTTFELVDVIKEGIPAAARRHGGHPAKKSFQAIRIAVNDELGALEESLEQALDLLDVGGRI
SVITFQSLEDRLVKTMFREKTSLSGDVPQGLPVIPAGMEPNFKLINKKPIVASEEELAANHRAHSAKLRIIEKIREGK
>SEQF1778_EEI65226.1 protein MraZ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLMGEFTHTIDSKGRLIIPAKFREQLGAHFIVTRGLDGCLFGYPLNEWAILEQKLKALPLTKRDARAFVRFLYSAATDCE
IDKQGRINIPITLRTHASLEKKCVIVGVSNRLEIWSAERWNKFTSETADNFDEIAEDLNIDF
>SEQF1778_EEI65227.1 hypothetical protein HMPREF0534_1468 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVSIQVIILEIILLLVIGIVERLLVRIFHHPKKIKHLWWGWTIILWILIIFNIGFYWPAYPIALWMILALLLIALQIIHN
HEFIYRRYWPVFWRYSAYYALIIYIGSLIISPWLPLI
>SEQF1778_EEI65228.1 hypothetical protein HMPREF0534_1469 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEGWLIMQRKKKTRFQKITMVAIWLMLIAMLGSLIFGAVASLNLI
>SEQF1778_EEI65229.1 FtsK/SpoIIIE family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MARRKKASSRRTRGKKQQYRLMDNLLGIIVCLLMLVGLFNLGVLGTFLDNCFKIFVGSSFPIAMIIVFLYGLCFALYGHR
PHFKKRWIAGTIIAYIGLLMWLQTVMFQRLNLHAKVIETTWNSLSKVIFNGDSTVLVGGGMMGAYLYNGSNILISEVGTA
VLSWLLMIIGIIVFFALPWREFLVKCGIGIKKSGAAMANAHDQLMKKRTERATKPTTVPSISVPLAKASRQVKDFFADQE
SAEPTSTPPVSPAMPAQDPVEPTIRVASESQVEETQSGRKDDQDSNQHDDAEIKLAGIDAKEDNDYQLPPVSLLSQVKVT
DQQEDLNNIKKNTKTLQQTLKSFGVDATVENVNLGPSVTKYELRPAVGVKVSRITHLADDLALALAAKDIRIEAPIPGKS
LIGIEVPNQQIATVGFRDMVENAPSNDNPMEVPLGRSVTGDIKMADLTKMPHLLIAGATGSGKSVAINVIITSILLKAKP
HQVKMLMIDPKKVELSVYNGIPHLLSPVVSEPKKAARALGKVVAEMERRYELFAKFGVRNLDGYNKLVKQQNDDHPDEVQ
ANLPLILVIVDELADLMMTVSHDVEDAIVRIAQMGRAAGIHMILATQRPSVDVITGLIKANVPSRIAFAVSSGVDSRTII
DTNGAEKLLGRGDMLFEPIDQNKPVRIQGAFISDHDVESVVDFIKNERAAEYDDNMVVTDSEIEQEEQAEEEDELFPEAL
DFVVDQQKASTSLIQRRFRIGYNRAARIIDDMEQRGFIGPANGSKPREVYKQKSEE
>SEQF1778_EEI65230.1 putative RNA methyltransferase, TrmH family, group 2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNHIVLFEPLFPANTGNIARTCAGTNTELHLIKPLGFSTDDKHMKRAGLDYWDKVKITYHEDLPSFMKTIPDINRLYIV
SKFATHDYSDVDYTGEGDHYFLFGKETTGLPERFMQKYPENAIRIPQNDNNIRALNLSNSAAIVIYEVLRQQSFPNLARV
HKYEFDKLK
>SEQF1778_EEI65231.1 methyltransferase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKVERQREMVKNNLALFQCPVCEQPMERVEGNSIICGNNHRFDFNRHGYLYFLNGAANTEYDCSMFESRRQLLNAGLFK
PIIENISKFLPSKSLRILDVGTGEGTPLLQLETIRANCNDTMIGFDISKPGITLATQLPLKAFFCVADLRKLPFNDESFD
CILELFSPSDYQEFKRVLTKDGTLIKVIPNANYLVELRHLLYETGERNYHYDNSRVIELFNQHYPHSKVETVTYQFRIPD
GLQQAMLEMTPLHWGANAKRLSKEELTQLKTITVDVSLLIAKKAN
>SEQF1778_EEI65232.1 hypothetical protein HMPREF0534_1473 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEQFLIGTYTKKTSKGIYKVTLDTDQEKITNVELAIPSQKPAYLQVGQDGRIYAIKQVDDKGGVASYSLNDDNAKMLSD
ILAAGAPPAYVGVDNKRHLLFSANYHTAKIDVFKINEDGTLTQTDSVLHEGATGPEPEQEAPHVHYADLTPDNRLVVCDL
GMDLVVVYDVSDDGKLTAVSRYKCEDGFGTRHIVFHPNGNYAYLLGELSSKLEVLKYNSKDASFKHLQTLKTIPEDWTAH
NGAAAIRISNDGKFVYTSNRGENTIAVFEVQPDFTVKHIQSISTEGDFPRDFNLNQDENYLLASNQNSDNLTLYKRNPST
GKLTLLQKDVSCPEPVCVMKWK
>SEQF1778_EEI65233.1 hypothetical protein HMPREF0534_1474 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MACTGVCLLIAEQNEIITPVFKNKLSTFNKHSSTIADIFDRCNDNSLVMDTIKQTLVKSRKLNHYSVVIVTSNILVYFMA
NMGISRGDRCLDNTPDGTL
>SEQF1778_EEI65234.1 glycerate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFVIAPDSFKGGLTAKEAANVMAEGIKRVFPNAEYALVPMADGGEGTVQSLVDATNGRKMIAKVHNPLNKLVNAEYGIL
GDGETAVIEMAAASGLQFVNKETANPLITTTYGTGELIKDALDHNIKKIIIGIGGSATVDGGAGMAQALGARLLDADNHE
IGLGGGALASLNQVDFRGLDPRLKNVDIQIASDVTNPLTGKNGAAPVFGPQKGADDEMVNILDKNLHHYARKIVAAGGPD
VEQTAGAGAAGGLGAGLIAFTGATMKRGVELVIEATQLQKKAVGADYVFTGEGGIDFQTKFGKTPYGVAKATKEVAPNAP
VIVLAGNIGKGVNDLYSSTAIDAIFATPEGAKPLKAALADAPIDIAQTAENVARLIKVSHVNN
>SEQF1778_EEI65235.1 putative ATP synthase F0, A subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISWWGALIGLALAIFLILRKLDPVYSLLLGAIVGAVIGGAGLEGTINILVKGEQSVMGTVLRVLAAGMLAGVMMDSGAA
ETLARTIVNKFGDRLAIFALALATMVITAVGVFIPVAVLIVAPIALEVGRNMHISKLSLLVALSGGGKAGNIISPNANTI
AAAKGFGLELSQVMIADFIPAVIALIVTVVVARMIRKKGRAVLEQDLEDSAKTIKQSDLPTFKQAIVAPVIAIVLLLLGP
IGTICHLPLLAKVNLDATYVLPFAAIIGALAMGKGEKIKSYAQTGVSRMTGVVMILIGAGAIGATITASTFPELLIELIK
ASHVPGVLLAPLSGILMAGATASTSTGVILATGSFAKSILGFGVAPLAAAAMVHTGAIVIDQLPQGNYFHVTANAMHMDI
KERSQGIFYEFLVGGSAMLTATILYGFLHLL
>SEQF1778_EEI65236.1 putative sugar diacid recognition [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELKPELAQSIVDHMMTQIPYNINIMNKKGYIIASGNKSRINTLHVGAVDAIKQRKTLPMEQQYGNHGQPGVNMPLKFKN
EIIGVVGITGDPNKVTPLASLLKTAVELLLQQKQENEQEHEIEKVKQRFIYRWINVSKYQNPQLDSELVEEANRLNINLA
KQRLVIAIAGSSQIIKNLKLDQETIIFSLTNHIELIILSSKHQETYIQQKLEHQEIEYGISNWGNLLGRLAEQAVTTLRL
SNIFGKPSFRHYSQVSFIKQVLDSDLNLIAVNDQYEALLKRKDGKELIDTIREFIKCNMSVNQTAHNLFVHRNTLNNRLL
RIKKLFELDPKNTEDLFQLFIGYITFYYRQTL
>SEQF1778_EEI65237.1 aspartate-semialdehyde dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEGTKMSKEYNVAILGATGAVGTRMIQQLEQSTIPVKSVKLLASAKSAGKQLSFKGQPITVEETTPDSFNGVDIVLSSA
GGSVSKKFLPEAVKRGAVCVDNTSAFRMEPDVPLVVPEVNEEALKNHHGIIANPNCSTIQMVVALEPIRQAFGLNQIIVS
TYQAASGAGQSALNELRQETQDYLDGKDMQADAKILPTKGDKKHYPLAFNLLPQIDVFEDDGYSHEEWKMIHETKKIMLN
DMDAKDIKVTATCVRVPVPIAHGESIYFTVDDPTVTVDQLRAVLKDAPGVVLQDDPAHQVYPQPINAVGKRDTFVGRLRA
DEENPGSFNMWVVADNLLKGAAWNTVENAERLVANGLV
>SEQF1778_EEI65238.1 aminotransferase, class I/II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPRLHAELATTVNSHLAAVPPAQIRAFDEEISAVPGLVKLTLGEPDFAVPDHVKKAAIESIQNDDSHYSSSKGKIELRKA
ISKYLEQSRHVYYDPETEIVVTIGATEAVTATTFAMLNPGDKVIIPTPAFSLYFPSVSLTGAEPIKVNTAEDGFLLSAER
LEEVLAKEGPAVKAVLLNYPNNPTGRSYTEEELKALAKVIEDHHIYAIVDEIYSSLMYDQPFHSLATLLPEQTILISGLS
KSHAMTGYRLGYVAGPGEFISTMSKMHSFMVTCPNDTAQAAAIEALENGNDDPQEFKRAYRQRRDKLASAMRKMGFEIAL
PDGAFYIFAKIPAQFGKDDLAFARKLAHEAKVGVIPGNAFGPGGEGYIRLSYAAADSVIDTAIERLQNFMNNLG
>SEQF1778_EEI65239.1 dihydrodipicolinate reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKVLIAGATGAMGQKAVDLVNSLAGFEITAALAPTLTKENMADFHLASSVHPYQTLDEIEDGVADIWIDFTLPSAVYQN
VKFALEHGMRPIVGTTGLTDEQQADLVRLSEEKQVGGLIAANFGMSAVLLMKFAQEAAKYFPDVEIIEMHHGDKKDAPSG
TALSTAKLIDQVRPAHETNPDETESLTGARGGDYHGIKIHAVRLPGYIAHEQVLFGGDGEALTIRQDSFDRQSFMNGVKV
ALEKVDGLSKLVIDLENIL
>SEQF1778_EEI65240.1 dihydrodipicolinate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLLQNADLMTAIVTPFDDEGNIDYGRLEYLTNYLIEHGSNGFVIGGTTGETPELTHDEKIELYQHFGEIVNVRVPVIAG
TGSNNTKETIAFTNEVAQINGIDYALVVVPPYNKPNQRGMVAHFTAVADNVDLPIIIYNIPGRTGVKMAQETVVELSHHQ
NIAAVKQCTSLEELEYIVEHRDPDFAVFTGEDAQALTARVLGANGVISVASHTYVDQMRQMYDSLYRGDYQTAGKLQRWL
TPRMAALFMFPSPSPVKAVLNAQGFNVGSCRLPILPLNEEEKRELETALSLPTNSLTAKNLPLNLGE
>SEQF1778_EEI65241.1 amidohydrolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKMLTEEELIQIRRHLHQIPELALHEFDTHQYLVETVASFNQAFLEVRTFKELPTALMVLVHGQNPQRTIGYRTDIDALP
VEEQTGLPYSSTHPGIMHACGHDIHMTVALGVLNYFSEHQPQDNILFFFQPAEESENGGKRAYELGLFSGKWKPDEFYGL
HDNPDLPAGAIGCRMGTLFAGTTEVNIDLNGKGGHAAYPQNANDTVVAAASLILQVQTVISRSIDPIQSGVITLGKIDGG
TIRNVIAGHTRIEGTIRGLTQTMIETIDDRLKDVCEGIGRSFNMDVSLELNQGGYWPVENNPELTKRFIHYMEETPTVNF
IETEPAMTGEDFGYLLAKFPGTMFWLGVEDDSQLHSATLTPNEKAIKRGVDAITGFLEYRMQN
>SEQF1778_EEI65242.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAELDAQTIINYISNAPKKTPVKVYLKGNLGDLEFPAEVETFLEPHTGVIFGDWTVIEPLLKKYSSAIESYHVENDARNS
AVPLLDLKDINARIEPGAIIRDKVLIGDNAVIMMGATINIGAEIGADSMIDMGAVLGGRAIVGRHCHIGAGTVLAGVVEP
ASAEPVRIDDNVMIGANAVVIEGVHVGEGAVIAAGAVVTHDVAPHTMVAGVPAKFIKNVDDQTAGKTELEDDLRKL
>SEQF1778_EEI65243.1 diaminopimelate decarboxylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEELQMNEQITDQQLNAAGHLTIGGCDAVDLAHQFGTPLVVYDVQQIRQQIRAFKRVFEENNVDYAVSYASKAFSAIAMY
QVVAAEGAHVDVVSGGELYTAIKAGFPMADVSFHGNNKSREELEMAIDHHVGTIMIDNFHEIELLADVLEKLDAHVDVML
RITPGISAHTNKYIQTGQVDSKFGFDLQSGQADEALAKVLENPRMQMKGLHAHIGSQIFELAGFEGVAKKLVEVAAHWQE
KFNYQAAVINVGGGFGIRYVKDDTPLAPEEFVAAIIKAIKAEIKETNLAMPAIWIEPGRSIAGPAGYNLYTVGSRKDVPG
LKPYVTVDGGMGDNIRPALYEAQYETVLANNPRAELVEHVRVAGKYCESGDILSQNQVLPATKPGDVLAMLDTGAYGYSM
ASNYNRNPRPAVVFAEKGTAQVVIKRETYDDLVHLDEPYQQ
>SEQF1778_EEI65244.1 aspartate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVVKFGGSSLANGEAFQNAINIITSDPQRRVIVTSAPGKRFADDIKVTDLLIKYAQAVIAGQNPQEIVEQILNRYQEIA
AYFGLPADKLIPLVERLEGLPNHTYPNDNYLLAAFKAHGERLNAQLMAILLQHLGYEARFVTPSEAGIIVTGTPNNANVI
PETYANLSHFTFNENELLVFPGFYGLTLAGHIATFSRGGSDITGAILARGLHASTYENFTDVDAIYSANPQIVDHPQPIT
TMTYREMRELSYAGFSVFHDEALIPAIQGNIPINVRNTNDPEKPGTMIVPDKDFQPSDIITGVVSGKHFAALYLHKYLLN
KQAGFTLRILEILAKHNVSYEHMPSGIDDITIILDRNAINDQLIDTICNEIQEEINPDRLEWIDNYAITMVVGEGMRNRT
GVIDDILMPLAEKHIAVPMINQGASRIAIMIGTYNEDADDAVRAIYHRFFAN
>SEQF1778_EEI65245.1 diaminopimelate epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVQLLKVHGSQNAFFILDQTQLTTPLTDKELVSFTRKVTDTQNGVLGGADGVLVVNHPTRPGSVAQMRVINADGSEASMC
GNGLRTVARYVAERDNLTDFKVDTMNASLRVRQHEDLAPGVPAFAVEISPVKFDRTALPFDNLGHERLLDTLVPELYPNL
RFSALAVPNPHLISFVSMEELNGPALEELGTRLNSDNLYFSDGVNVNFGHILGHNKLFVKTFERGVGFTNACGTGMSATS
LALALTHPDAASFNEPISVYNPGGMVKTILHRDDYNYWVELIGNATFTHIITVEESTIHQENLDELQSSSVETDENKAYL
AFVNSLPSLKFEN
>SEQF1778_EEI65246.1 ribose-phosphate diphosphokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTQIKNADNVRLFSLNSNPKLAEQIAQRVGIPLSKASISHFADGEIKITIDESIRGCEVYVIQSVSDPVNTNLMELLIMV
DALRRASAAKINVVMPYYGYARQDRKARSREPITAKLIANLLEMDQISRLVTIDLHAPQVQGFFDIPVDHLQATSLFTKY
IEEQNLGDDIVVVAPDHAGVNLARKYAERIKASIAIIDNRNNEVREQTEQEVPEYVIGDVKGKTAIIVDDIVDTGVRMNL
SAQTLKNFGAAKVYGIATHAVLSADAVNTLQNSPLEKMIVTDTIHLPKEKEFPKLVQLSVDDLLKEAIVRIHNNQSIDTL
FNRK
>SEQF1778_EEI65247.1 helicase, RecD/TraA family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEEIDLFKTPTEPSFFIGQVQSEIFTSPDSFFKVLIVSVEEANFDWHEPEITVTGSFGDLSDNQTYRFEGKIVEHPRYG
QQFQATSYHVNRPTSKDGLVDFLSGKQFTGIGKKTAEKIIDKLGTDAINKIIADPHVLDKLKLRKAVKDSLVDNLRANQG
MDEIIIGLNDLGFGANLSSAIFDKYGEETLHIINENPYQLAAEIDGISFNRADQVAQKLGIATDDSRRIDAAIIQMLDDL
TMETGDTFTTTKPLLQQTIQLLAQGSGGRVSTDLIANQIIELEKNQAISYADEKIYPTALYNAEWQIADHLHRLLTVDQE
KVPVTTIEKTVTKVADQSGITYDQVQKEAIKTALNSKVMLLTGGPGTGKTTIIKGIVASYAKIHDLSLDVNEYKEKSFPV
LLAAPTGRAAKRMSEATDLPASTIHRLLGLNGREMPTDMNARDLEGSLLIIDEMSMVDTLLFKTLIQAVPTSMHVVLVGD
KDQLPSVGPGQVFHDLLDFAELPKVELTNIHRQAADSTIIPLAHAIKEGKLPSDLTNKMPDRSFISCHANQVPSVVQQII
DLSKKRDYSANDIQILAPMYRGQAGIDRLNELAQQAYNPPANGKQEVDFRGLTFRVGDKVLQLVNVPEKNIFNGDIGKIT
AIESGRTVGKKNESITVDFDGNEVSYSRMEWNQLRLAYCISIHKAQGSQFKMVLLPIVQQFSRMLQRNLLYTAITRAAEK
LVLIGEPYAVVTSVKNEAVNRKTSLVDRLDKVWSKHGELKSKLDHQTDSLTKELSSPQPVQKENKQLINNDAQQYILTAD
LINSETIDPLIGMENISLQSLHQAK
>SEQF1778_EEI65248.1 tetratricopeptide repeat protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KKGQYKQAVAYGLTALELRPDDPEINQVIGDSLLALGEFKQAKAYYDAILKYHPGRADTQFNRGIVAMVLGEPYKDYLAQ
AKQLDPNYYHKSEQRLNDIEKALQATQKKD
>SEQF1778_EEI65249.1 dihydrolipoyl dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADVEQKDTVIVGGGPGGYVAAIRASELGQKVTLIDKGEPGLGGVCLNVGCVPSKALIAAGHRYQETLDSSIYGISKTDA
KLDFTKTQEWKDHKVVDRMIRGVKMLLKKHKVEIIDGEAILDNDHQLRVIKPGPKQFMDNDNGRTITWKNLILATGSRPV
EIPHFKFEGRVIDSTGGLNLKEVPEELVVIGGGYIGTELAGAYADLGAHVTIIEGTDSILGGFDHDMVDIVVKNLEKKGV
DIVTKAMAKDSQQDENSVTVTYEVDGSEKSIKADYCMVSVGRKPNTDDFGLDMTNVKLNDRHQVIVDEQGRTNVPGIWAI
GDIVPGPALAHKAFFEAKTAAGAIAGKNTANDWVGVPMVCFADPELAQVGMTVEEAKDKGIDVSTAQFPFAGNARAVSLD
AAEGFIRLIYTKDKKNVIGAQGVGPGVSDLAGELSLIVNCGMNVEDVALTIHPHPTLNEPVQEAADIALGFPTHI
>SEQF1778_EEI65250.1 2-oxo acid dehydrogenase acyltransferase (catalytic domain) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAYIFRLPEMGEGLTEGDVASWLVKEGEAIKADDPLIEIQTDKSTTQLVSPVDGTVKKLFVKEDDHVEKGDKLAEIDDGK
PGISTNVESEDDDDETDTGSEEATESEKSTAPAADSPSEDNSPKGGVAPLAEPNKLVMAMPSVRQYARDKGVDISLVQPS
GNHGQVLKEDIDNFNGSAAPAKEEKSAAMSAKTAPVAAKTAGNTIKPWNADLEEREPMSNMRKIIAKTTRESKDISPHVT
SFDEVEVSALMVSRKKYKAVAAEQDIHLTFLPYIVKALVATCKKFPELNASIDDSTQEIVYKHYYNVGILTNTDHGLYNP
NIKNADSKSMFEIAKEITENTQAAFDNKLSPESMAGRTISISNIGSIGGGWFTPVINQPDVAILGVGRIDKEPYVNEDGE
IVVGRMMKLSLTYDHRLIDGGLAQHALNYMNKLLHDPELLMMEG
>SEQF1778_EEI65251.1 Transketolase, C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKTYIKAITEGIDIALAEDPKTLVFGEDVGKNGGVFRATNGLQEKYGVDRVFSTPLAESGILGMSIGLAVTGWRPVPE
IQFMGFTFEAMDSIAAQMSRIRFQYNGTKHAPITIRTPYGGGTHTAELHGDDLENFFVGIPGLRVVAPSSAYDAKGLIIS
AIENNDPVLFLENLRLYRSVKGEVPDDKYTVPLDKANVVQEGTDVTIIAYGGEVSEAQKAAKKLAKDNISAEIIDLRSLY
PLDTDTIFESIKKTHRVVIVQEAQKMAGVGAQVASAISEGAIMYLDAPVTRVAAPNSVYPFPQAENVWLPGARDIEDAVR
EVINY
>SEQF1778_EEI65252.1 pyruvate dehydrogenase E1 component, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNMANTKAVNFAEIKANEGVPYAKPVQILDNDGNVVNEELMANFSDELLVDLMKKMVWARALHEQTMSFSKQGRLGFYA
PTWGEEASEMGTAAAFKKQDFLFPAYRDLPQLIQHGATVAQMYLWSKGHIKGNLFDARALRPQIIIGAQMVEMAGGALGI
KKNGEKDTVAYAYTGEGGSSQGDTYEGMNFAGAFQVPGVFIIQNNGWAISFPRKLQTETQTIAQKAVAAGIPGVQVDGMD
VLACYEVAKEAREFAAAGNGPVLIETLTYRFGAHSSAGDDPTRYRTEDETKPWFDKDPLIRLRKYLTKKGLWSEEEEQKY
ADECKQSFKEAMKEADSVEPEKVSDMLKRTFEVPTPDIKEQIKKYEEKESK
>SEQF1778_EEI65253.1 peptide deformylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKDITRDGNPVLRKRAAKVSFPLSDEDQKLAKDMMQYLEVSQDPELCEKYKLRAGVGLAAPQVGVSKQMAAVLVPAPAEG
EKPLFKDVIINPVIVSESVQYGALTEGEGCLSVDKDVPGYVPRHDRITLRYQDVNGETHKVRLKHYPAIVCQHEIDHLHG
VLFYDHINKDQPFEAPADTVMIS
>SEQF1778_EEI65254.1 hypothetical protein HMPREF0534_1422 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVIFLICILAVIIVIALYLTIHRVFLKRATMMVQKNAQDVTDAALNTSLKEMLHWNKNLNSQIVADVWGKGVLAFEYHFD
YKKENINLDDFTRQKLAAELNEYAKRHHLKMAPKASQPFIITDWWKYEGLLHIDIAYLINEATVEYIEDLKKLNQNSN
>SEQF1778_EEI65255.1 hypothetical protein HMPREF0534_1423 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTFKVYYQADKTKRPVRENTQSLYIEADSEAEALLMVEHNTDYNIEFVEQLDEKALAYEKQNPNFKLTTF
>SEQF1778_EEI65256.1 lipid kinase, YegS/Rv2252/BmrU family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNYSIILNRHAGNGNAEKAWSSIKPVLDQQQIDYHMETTKYPNHGEYLASQIAQSHNAGSTIIIAIGGDGTLHQVVNGLM
KTAKRLNKKPLAVGYIPAGTGNDFARGYGISMHPQRALNQILTADAPQKINIGHYHEAIRGEEGYFLNNLGIGFDAAIVS
RANTFKARHKKNHIGRFTYLQKAIGVIYDQEPFTLMIQSGRERFIFPKAYIAITSNHPFIGGGFKVAPSASLKKPSLELV
VAERKGWPMTIWQLLQLARGNLDQSKFAYHFQSDNLHITTTSLEFSQTDGEEIGNRFIDLTLDISQYPIWQTTEK
>SEQF1778_EEI65257.1 hypothetical protein HMPREF0534_1425 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNKHEIEEDLYRAQSRLDDLCKQEGQENTGTQTVTIQPKYGEEMKSLREECSQLRIILEAMEASED
>SEQF1778_EEI65258.1 LysM domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKKRTHHSNNHRSRGVFAGAVSALSLLAVTTQAVNAEQLTVKSGDTIWGLAKQHRLSISALEQTNPSVKKISDSIDLIT
VGQQLTLPTAQHDANADLNADGSYTVKPGDTLSSIADRYNVTVSQLMSWNNLSSNDSLYIGQQLSVTGPAISTAVNAPVV
STPVADASVSAQQQAAQSTDTTSLIQVQTSAVASASMPQQDVASSQPAGTSQATPALSATQQVSTSSTVAAPNQSAANNS
STTIANSTTSTSAAVTSSATTNSPAITTVAAQPATANNVQVASASAENSVAPQTQSFAVSQATSTAVNTAALYGQSFVQA
APVASQASQSQTAPASQATDNVQNSNAASQQTTVVTSQAQPQQSQAAASQPAQQAATTNQDLQHGSVVSLATKIANSNSV
PYVWGGESLSGMDCSGLVKYVYANAEGKQLPHYTGALENCVDQHPVSEAKPGDLLFWGNHGSTYHTAIYTGNNQYVAAAH
PGTNVSTYTISPYFNPSFAGTVK
>SEQF1778_EEI65259.1 hypothetical protein HMPREF0534_1427 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMNSLITFIISIAFLGLVIWENRLHSQLGFLASQRPDKVTKDFIRVVRQEKRLNWILCILAIIVFMTTSRYSVLLMSIIT
IIELLLVTRMDRVKNEMID
>SEQF1778_EEI65260.1 hypothetical protein HMPREF0534_1428 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNWKITKENLKMEDNKYQYDENGFREDLKDDPDVLHQPDADRTQRDLITLDYDETLAFLNGEKEVKTVYDFSDDVLEKIK
EKYPTLNDTPINKVIMEKYQQILSARYNESQANNKTVHADDSEDNDE
>SEQF1778_EEI65261.1 hypothetical protein HMPREF0534_1416, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
RKYSQSYNSKYVNGNIKVLDCHHIKLPKLGIVYFRAGRLPMGKIKNVTVRLNVAGQYYITVLVESENQTLPKTSKYIGGD
LGLKSLLN
>SEQF1778_EEI65262.1 putative lincosamide resistance protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNNNVTEKDLFYILDLFEHMKVTYWLDGGWGVDVLTGKQQREHRDIDIDFDAQHTQKVIQKLEDIGYKIEVDWMPSRME
LKHEEYGYLDIHPINLNDDGSITQANPEGGNYVFQNDWFSETNYKGRKIPCISKEAQLLFHSGYDLTEKDHFDIKNLKSI
T
>SEQF1778_EEI65263.1 hypothetical protein HMPREF0534_1415 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHLGIVPFNAEKKLSAKTLFNRQALQAVQDELPKYLNERGFELERGEKGSERKNLTVPEYKKAKDELKEMTTTLEQRKSE
VLALSNDKTPTINKESLDLKDETKTVKVPSGETIGIGKLRHEFTKNEERKTGNVIIPESKLNALIQGYEDLYKSNEQLKK
YAETDLPKRIDYVKGKYKEVVRDYNDLADRFNNNLEKIDSLEKENKSLKNEIKGIYRGFNQFMENTLGATVRQAEKLMNN
LVSEIKEFVKGGEFEKIHRNETRTRDRDELSR
>SEQF1778_EEI65264.1 site-specific recombinase, phage integrase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQLVLPIKDTNVLHEVEDTLLHNFREGRRNYTIFQVGKATLLRVSDVLALRRNEIYKTDGDIKKNAYIRDKKTGKPNIL
YLKPVKQDLIDYFNWLNEQNIQSEWLFPSSRDHSRHITEKQFYKIMARTGDLLGINYLGTHSMRKTGAYRVYTQTHYNIG
LVMSLLNHTSEAMTLKYLGLDQVSREKMLDEVKFD
>SEQF1778_EEI65265.1 addiction module antitoxin, RelB/DinJ family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDARVDSRIPVDVKEKASKELAAHGLSISSFIRMTLSSVANDGLPKYWGIPNAETMSSINEAVDDLSKHKLKGASSYNEL
EKLLDE
>SEQF1778_EEI65266.1 hypothetical protein HMPREF0534_1409 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKVIPTNHFKKQRKKVKKNPRWHSIFHGEVPFPDDHRSPWEYVINCFLNDEPIPDYFYEHSITLTAQQKSQIKNRLGSL
SQVEIKGLDLHFDGHNGDHLLLYIRTNQGIVYLVGIGTHSDLF
>SEQF1778_EEI65267.1 hypothetical protein HMPREF0534_1410 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSPKSIARWQELKAKKLNGRTVPEDMEYKKLQMKHDADVLALNELKWKAELAEAIMISSMNNSNTKSVLDDVIQSEIGEE
QKPYSRKDIADFVNVFLAKAKQEVTTQNHKQPLGSNPLNNNELPDGSKHSN
>SEQF1778_EEI65268.1 hypothetical protein HMPREF0534_1411 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIKCTVTTDLQAKDTNGYSGIQKHVEHDEKINHTNKDIVFSETQFNQYNESQQTREAIDKWNDEHFRDYVEEHDKHQRA
KGHAERQYGSVKNYLKRKKKATAVLTIGNMAVQSTLMKQFCPVTSYQKEKLPDGTTHLVFKLKDQQGQPIPDNIAVAKQF
YGCFNRALIHATANNVGWKPNKTHQQRINVGDYLHRGRYATNNDEMGISHIHYELATFGMTRGGKKRAAHVTNSLNQALV
SLHQAVTGKTVSGRAAIKWYRTNMDQFALKCLEDELHQTYQVPENKKILDFERKTEDDKTLQTGLSMEQLKAQHQEIADH
QKAVNALQGQADNLNSQNHDIQVQVERVTKNLKAIYEATTGHQAVDKDGSDLSPLEMANGITGAVKSAQEGQQQAEQDAN
AAKAQQKVAEEQQKQQDRQLAQQRQQLQTLQNQLKDADDQLKERKQQRIKAAQQEIDQNDLTYSDDQSITVNEDNVAEME
QELDSWRQEQRADWEKDKQTHQDELDNLNQEITTARTKKAELSSTNQQLTAQNQQLQATNKTVQNQIDGYKNQLINTIVE
NDPTHKVEQPLLQPNEAAQEIQTDTGRQQHFRQTLKYLMDTATKSLQKIKNKATEFIKQVTKTLTTPSTKESNQPISNLH
SAQLDTNSIQPSKHPFDYHKERQLENDPIIKLKKAILLANSQQLQKADKQIKNSITKQIDEDYQF
>SEQF1778_EEI65269.1 hypothetical protein HMPREF0534_1412 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKSKSKTYTTSELARHFNISVVSASRFIVKHKLKPVKTGQHNAKYYSDAVFQQMEEYYQNKPKTQEKQTYPATKDTIIE
QLKAQIQEQAATIELLKQQLTVKDEQIATANKLADQAQQLDLTTHKQQKSLPQPLSNSNETVKHSWFWKITH
>SEQF1778_EEI65270.1 CAAX amino terminal protease family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLKNRILDIYRIQLLLAMIILILNDYLRHLDSPIILCLVGITLLLASFNQVSRPWQKLNWGIQLLVGPFILSHATGSLL
VLLSASNVICGFVVLCYLVLFLPYAELFVKPLKNFWFRLFWVIFFFQIAISPAIYYGISTNHGNRWLTLLLTTGCLGAIT
YFITVTRVFAAWRLQTPLSLTTQQLKLNWAVVLTYCLLVVLFLYSNLASCQRLIWRNDLHQWQQLLLSLESGIGEETLCR
YAILTLLLVLLRNTKWPLQLLLGIFGSSLIFGLFHFINLTDQSLSLTIYQFCFTTVSGIFFALIFLYTGQLWLVMLIHFV
MDFAASLSNGATFGGTVSWADYQSVLVLAILMVGLTTWMMFGKRAQVMVQRVRILTNVVR
>SEQF1778_EEI65271.1 LPXTG-motif cell wall anchor domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
FGTKEGTMMTREEYKAQQANLPQTGNENSKAVVALGVLAGMFGLGLASKGKKEF
>SEQF1778_EEI65272.1 hypothetical protein HMPREF0534_1397, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKISVKTKLKAVEEYANGNVTLASVRHKYGIAEHDFQIWVGIYARFGKGPLLNPPKVTGDFRLNLVKWKQENLASI
>SEQF1778_EEI65273.1 hypothetical protein HMPREF0534_1398 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEEKREIITLNFISTPSPMTTPVKRIVAKVEFNGICLMISKGC
>SEQF1778_EEI65274.1 TIGR02687 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVQLKLDKIVKEINHYFDQGYQYVFWYDPDGEFADDVTEDNQYLKDNLAAELQPVGAKEQFKIKRKLLDKKNQDRSFLVY
VKAKRPQLQFDYFADMERYGHIFSAKASDIVFEQLAEQLNFDNSKRNFVKKYLKYFRAKSRRQTYIHNFESRLINHPELM
ILSNLAGLDQFDENSLLMAVFKGGMDESNNKIIRSFSKYDVLPLFWQIYDKYFGCSNVRSLKGLFDGALVTSVYSQLEEK
IPSELLAQPFENYSNVQVFMKRFSDSRKYQELYQNLTGTAWNEFKLGTYLKDENVQDLLRVDGIRQIEELLLERVRANFS
ADGTVTDGDETIGVIDQVTRGVNAFNPEFNFLKETYHVLKYRPRFYDDWHEMLNDYVNKVFKVDTHYRYLVTNYRRISED
KRHKYEDIKRMVDDYYNDQILDQSVREWNTTFQLQDVESKQREQNFYRNFVHGANERIVVLISDAFRYEAAHELHAQIAN
DDRITSKMNYLLTGLPSVTYMGMPSLLPHHKLEWQKDNVLVDGHMANNADNRRKILQLWDKNNDLLKLDDILKATSKEIK
AMIANKNVIYVYHNQVDAIGDNLKTEDETFRATDQAINEIRRAIQVLRTNSVSHIIVTADHGFIYREASVEEQSKIDIPA
SDYNGKISPRYLMTPDDLSNIPGVMSVKLGISLTNNDQTNVYYPATVNVFKSQGGKNYVHGGSSLQEMVIPVLDMRMNSS
RSKAEFAEIRLAATQHSINALRMTLKFNQVEPISDLIRPRKFNIYFMNQFGRVISNVATINANRTDAEINQPLSADIVIQ
NRQYDRSEDYYLVIDPDKGSITNPRYHYQMNLIND
>SEQF1778_EEI65275.1 death-on-curing family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNYLTEEEIMEINRQIIQYAGEGMIQVLDPNGLNSIVEAPQQTFFGREAYPTVWLKAAYYLQKLTKKHVFADGNKRTALE
ATKVFLLLNNINVKFYGIEAGQMVLDVTNSPDSEEVMLKVARYLKNHQIKNKSE
>SEQF1778_EEI65276.1 putative addiction module antidote [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYILLEQIEVFKLAIKSPTKIFKTGNSSAVRLSKDIMKAAGLKVNDPIDVTVNQQDGSVVIKPIKETNGFHDRFEELLNK
SMKDDQEALDFLKDK
>SEQF1778_EEI65277.1 hypothetical protein HMPREF0534_1402 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKTKIKNFAVNARKELIDSVRQRLANFGIDKTGIADELPISTATVKYYTNEHFPLKGKAIDWRKQIVSRIKQDTNQKWD
EKLNQFIDEVAYTWFNRIIAIRFMEVNDYLPSRTRVLSSEEGRIEPDMITHALEIEDDLGGYSDKERTQITDALMSHNPT
QLDKVFGMLFIKQTDELSNLLPGLFEKTSDYMKLLFVPNYSNGVIKELVDEIPEEDFDVSKSGQVTIIGWLYQDYNTEPK
NDAFKKKKFAAEDIPAATQLFTPDWIVKYLVENSLGRYWIKMLQSRGDTRTESEIAQKYGWVYFCPSDDSDKEIVLVKKQ
VEELKFIDPAMGSGHILVYAFDILMQIYRSEGYSDRQSVRSILTNNLFGLEIDDRAYQLAYFSLMMKAREFDRRVLTRNL
NLNIMPVPVASRMNQQYVKDINITSNQKLILDKVVDLFRYGNEYGSAIVLPQGLNENEVLTQLEKREETFIGQLGLNDVA
EMDQISSLRKIIKATKLLSSEYDVGVTNPPYMGLRRMDDNLKKYIKKQYPSHNQDMFSVFMRVMSRLVTNGHGYIGMITQ
HSWMFIKTFEKTRKYLNLNQTIINMAHLGARAFGDISGEVVQTTAFILLNKPAKNYVGSYERLVGGSSEEDKKRLYLECI
KYPNSSSMYRISQHSFDKIPGSPIAYWAPQALINDFEKGKPLGQLVDAKVGLQTGNNKRFLRYWYEVDFNNIFFDAHNTA
EAKQSGKKWFPYNKGGSYRKWYGNYDYVVNWQNDGYEIKHFTDSRGKVRSRPQNTDYYFKNAITWPLITSGNFSMRFRTF
GSIHDVAGMSAFSDNPNTLKLILGLGNSSIMKQLVGLLNPTINYQIGDIERIPVLHMDKTTESAVIQQVDHAISLSKHDW
DQQEESWDYGMPSVIQYEGSNLEQSLNTWLSDLQSRYYSMKNTEQNINGIFNRLYGLDQTEDSIESPISVRLPESRETTV
FAVNSLLSYFIGCVFGRYSLDKLGLAYAGGNWNESVYGSFKPNQDNLILLTDRDYFGDERDIINRLKEFLRITFAPSSLN
DNLHFIAKTLDPKKSERGESDEQIIRNYFLNDFYKDHDKTYHKRPIYWQFNSGRNDGFKALMYLHRYNKDELAMVRNYLH
DLQAAYSNTIKFNDEQETKSSTAREKNQYRKDTVKLNKKVTEVIKYDEALQHQALAQVSIDLDDGVVVNHAKVQGNEELF
SKL
>SEQF1778_EEI65278.1 putative phage tail component domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIKDIFAKDINRNIRGVIKIGQEAETIKKQELEEYVVTDELQSHFKRFFSAYVNSINRPTDATGVWISGFFGSGKSHFL
KILSYLLDNSMVAGKRPIDYFRDDSKIKDPDTIQLIEQSEQVPTDVVLFNIDAKADANAAADKSAILTVFLRVFNEKLGY
DSNPSVANLERWLDDHGQYQAFKDAFYKASGSHWVDVRNSFSFIKNSVKEALVQSGSMTEGNAADYLSNMGNFTINPEEF
AGMVKKYLDKKGNNHHIIFLADEVGQFIGDNGDRMLNLQTIVEQLQTQCAGQAWVVVTSQQQIDEVTANFTNQKREDLSK
IQGRFNTMINMSSANANEVIQKRLLAKKPMASDQLAAIFEENHYNINNKINFSDQVSRKKYADDNDFITNYPFIPYQFDL
LKDVLGAVRKHGAEGKHMSDGERSLLATFQAATVTYEDDKVGRLVPFSAFFRGMYEFLSHDHQVVFTNAEGNDAVCPNGN
HDTLAMQVLEVLFMVKYLDNFPATLENITTLLIDGIFTDREDLTSKVKKALELLISQKYVQLNVETYEFLTDKEQDVNEA
INSYEVDDTYIINKIGGYLIGDKYLSDRYVPKHMGNQYVFNFNIYIDGSAYGRSNNNQSLRIVTPLNPAGEEQYRMTAQS
GSTVVLVLPDNNSYISNFRRAGQIEQYIQKSAGNFDNQEGAIRLGKMDERKKLEKAADRALLNDLNNSTIYVMNDILDDN
TDITSRLSNAYQEVIDSSYRNLSYLTAIKDEKDVLHLLKGTGEEANTIIDDNQQAVQAVIDYLMMKTNQGMQALSMENIR
DHFNEIPFGYNDEDIAWLVAKAFKDGKLKLAFNNAPISISDAANNAQLITGYLTKKQQVRKLTLQIVREVPGKQRKAARD
FVKDILHKRSILADNDSTEQLAAKIVTTTKEKINELNGFDAFPQGPGKALIDQGVELLKPIANSGNNSERIYGLIDKHLD
ELEDWLEDMDDNGISDFYHSDTQKSVWRRSLDYMDRYNLAKGFIDSDNAVHKTAQTIKESLKKQNISRVIPQLEALNQDF
ATQFNNLVDKLYRQYQDKSENYLQLLEQRLADANFPEQTANKLQQRIQDTISRDNQIAEQKSNDGKYTELNDQIQLLKRD
ADQLQREIDETSQQIARDLRRKQELAEQATKHDSSERPHPIENISREVVHTKRVKTIKISDLEGQAWRITSDSDLDSYIN
QLKQSLQREIDLNDIVNVDFK
>SEQF1778_EEI65279.1 hypothetical protein HMPREF0534_1404 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYKEEQVHFEKLIQKIQKPDFQRNQGLSNEVGYYIYPYNVADTPRVRANLDDLTKSKTAMKINLKVFDLYDIMLDSIHKL
KGIADDDPFRILAEMEKQSGIDQVAQQINSLMRMDENNNDVVMYVQDHVDNQHCVIFITGVGKVYPLIRAHKVLNTMHQV
LDKNPVVMFYPGKYNEQNLQIFGEANDQNYYRAFLI
>SEQF1778_EEI65280.1 putative inner membrane protein (DUF1819) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIQNYNAGITSYALWFSEFKLCVSMYQEGNILDDIKQASDSNNVFEMPSRDRAKRASRNLTKRLKALPENIINQFEFLDV
NNQKLVALLSMMLTNRLLNEFVYEVYRNEIILGDKVLEEREMIEFITRKQMESEQIAKWTDETSKRVRGSLKTILRDAGL
LKREKNIDIVLQPFIDIHLAKLMKQDHLNKELTALGGQN
>SEQF1778_EEI65281.1 KxYKxGKxW signal domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKMNQGRVIMMKEHNNFASIKSHKKLYKSGKTWMVATLLTVGLAGGAAVTGTINAHADEVTPAQATGTIQAGSQATDPEL
ANAQSDAQKQQSTIDSANAQLKDQQNQLSEAQGQQSQAQQELDQAKQAQQAATQNDPAVKDAQAAVDQAQQQVDNQQQVV
NDTQTVVNNDAQNVQQKSDAVNQASQAVDQAQQTVNQASQAVEQAKQAVVDATNRAAEQKTEEAQNTINNLENQGKNQAS
QDLNNQINNVSGQVTDAQNDVNNTNAKIGDLQNQVKDLQNQETNTQADPNVKTVPNGVIDYSKSLLENVARNNLWAPADM
NANTNGNVVEQNIYVSPDNDKGNMSGANRNHDADVSSSAYDPYYTTDFDGVHGQMTDAQKQELAILLLNEINHAREQRGL
KPFVMTEQKYQQAQVRASQHSAEVLDHNDNDIMTAFGQDQYENLAYIPVDGGGNMLALFNNAGSTLSSMLNADASSDWGH
RENFLEDTGTLSANAAFGMHLTDDGQYYVLTFDYDLSNPDSTPNMMDRIAQYQAMGPITGDAHTVDNSAKINDLNNQISN
LQNTLASQQSKLQNLQTQLQNLQAQKANVQFDLSQLNADQQAEYNNAKNTLATINDWKNGQLANINKDGHVQDALNKLSQ
ANTNLTAEQSKLAQANQNLKNAKNTQAQDEAQLQQAKDGLAQLNQVLATKQAALQTAKDNANASANQAVKDAQAKLDKIN
GKIADLNKAIEATKTTISNAQAQLDKDNKKIADIKNGQKPVDPNKGDDKPTNPTTPTNPSKPNTGKDDNKGDQPTNPTKP
DSGKKDDNQGTTTPSEPSKGDDQKDHQTTPVEPSKPSDGDKGNVTPSDPNKDNKGSETTNPTTPTNPTTPDSQPTTPTTP
VTPAQPDHGNASISGQAGHKPGQVVDNGSQSTNSNATTDKPTIVLPTNGKESGAATQGQYIVVSKDSVAAQAGIQAPAAP
ETTSVT
>SEQF1778_EEI65282.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNLGANIRARRHELGITQEQLSNNTGLSINYISRLEVGTANNVSAKTLLKIAEVLKTSMDKLVNGSSDTANMGYYQKKL
WQALNEMNEQQAEQVSKNVLGLINLNKE
>SEQF1778_EEI65283.1 triose-phosphate isomerase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKPFIAANWKMHKNVQESVEFVDAIKGKLPDPQEVEVGIAAQAFALPSMVHAADDSGLKIIAQNAAAEYSGAFTGEISL
RGLADAGVSYVMLGHIERRHLFHEDNELVNRKVLAALQMGVTPIICTDETMVQKEVNGEIHYVFQQLMSVLRGVSLDQIK
NVVVSYEPSWAVGYGQHANPVLAEEGCRQIRRTIADNYTYEIADKIRILYGGSVNPDNIGMIMNKPDVDGVLIGRASLDV
DNFLRMVNYL
>SEQF1778_EEI65284.1 hypothetical protein HMPREF0534_1366 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKIYKLAANFSHILRLCTIGALAILGILLTIILFTETFSLIPLMQDGDTDHVIFKILDRVIVFFLFIYDNNNCRAKTSW
PNCDRFPIKLRNYGFNPGTNCRPRSAL
>SEQF1778_EEI65285.1 hypothetical protein HMPREF0534_1367 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNAYLIHGTSTRDDDWFPWLEEEAKPVITLDRIWLPNPFNPQQAEWDQAVDDQIHPQDNLILVAHSLGCITALRYIEHH
HVKDARLLLVGAFDKELPAYPELDEFMKDQPHYEHILPKLAKATVITAKDDPIAPYQNSIAVANKIRAKLIVKEKGGHFL
TSDGFTKFPLALKELNRLAK
>SEQF1778_EEI65286.1 cation diffusion facilitator family transporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKFKRHTTEEMNNWEKTQANELAKIRASQHHLIYNLIAYVVISIIEYWLAEISKSQTLRADAFNNLSGIISTFLLMMGL
HIAQDVDDDDIIGAQLPSGNYQAHMGSDQRVQFVRWRYETIFSLVTAVVMVAIALSVIIDGIKSLLDPASRVVPQPVALI
GAGIASVIMLVVWYMNRQTGLKLKNAALLASAQDSLSDAFTSIGTLISIGGALLFNLRWLDGATSIVVGFFILYSGLKIF
FESSLNLTDYFDPRAEQEYRQTITNIPHVVKVVELKAHYNGNVVTLDASVIVNAKMTILKSFQLSEHIENVMREKFGIID
TDISFVPDPHSFSDKDISGEF
>SEQF1778_EEI65287.1 Na+/H+ antiporter NhaC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTINKSKNSPEPVIGFSESLLILGVILCILGYPIIFKHQEPQAPLFISFVLLAVYGRIRGFKWDTVMGGMRHGLRAGVD
PLIIFLSIGVLIATWIFSGTIPTIMYFGFEIISVKFFLPTVFIVCTLVGVACGSSFTTVSTMGIAFIGIGATLKINPGLT
AGVIVSGAFCGSNISPLSGTTNLAASVGEISIYKHIKSLLTTDIPAWAICLILYTFLGLNSKNVSLGAVHQMMAGLQSGF
WISGWALLPVLLLIVLAIFQVPAIPSLGLGSLFAVVLGWIHAPKTSLTTITNTIMTGYVSHTGDKTIDTLLSKGGISSML
TSLALIIFALALGGLLIKFNIISAIINHLTGIVKTPGRLTFSTALTCIGVNLLVGEHYLAIILPGQSFLPSFDKLGLKRV
DLTRILNDAGAAVNAIVPWSVSGVFIASTLQINPLSFIPWAFFPFLVTILTIIAGMLVKVSVKSPAANLATE
>SEQF1778_EEI65288.1 cytochrome b5-like Heme/Steroid binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGWIIMRSFTHNELAQYNRQEGRPAYIGVRGNVYDVSEVPEWKGAEIHGNVFGHDLSDVTYQQAAKKCSPVSKLPIIGKL
VD
>SEQF1778_EEI65289.1 hypothetical protein HMPREF0534_1371 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAGSAIYKLASTKKDLNVTGIVRNESKASKILGDDANLISGDIFALSDSLLSRFDVIVDAYGTSPENADRQVRLAEKLVV
LARKHKIRLIFILGAGSLKTGKDKHLFVDDIEKMPGAETWINTPRQQLKELQYLETISDIDWLGISPSAVFEAGVATNYI
LGQDELLFNEQNESKVTAGTMAKLVVNEILAPRHHRERITVVDAE
>SEQF1778_EEI65290.1 hypothetical protein HMPREF0534_1372 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTYKHLTTRESTLIAEFYRQDTRAYQVAKSLRRSAETIYLVYRYLDTGKTIAQYLKQYQRNKRRCGRKPMTLPDDEVSYI
TKQVSQGWTPDTIIGRSEKKISCGMRTLYRMFARGQYDFDVKQLPMKGNRHPNGYVERRGKAGHLGRSIYQRYRDFPHYQ
HEFGHLEADTVQGKAHHGAVMTLVERISKVEIVLNVHHKTVESVNYYLDQWLSKQPRHLFKSITFDNGKEFAGWREIANK
HDIHTYFAEVGAPNQHGRQCNL
>SEQF1778_EEI65291.1 hypothetical protein HMPREF0534_1373 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYLEEDDETRYRAESYNLGQFRLSMSWNKLILKYRNRTIDELLVVFMDSATFMTVTPSLGSISPMSNSDMLTFQYYLADS
LDFAVEKLILNMKRSSITPNYNQQSKLLKRIIIFKNYNQLKQIKSVLQKQDEYIKGKCAPTKEQLELCRGALSMDFGKDT
PEMNQGHIEVMCEEANVSQFINNYLQSEIINNKRSR
>SEQF1778_EEI65292.1 hypothetical protein HMPREF0534_1374 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIRKGESEMLKKIFSWPFACAALLTLICSLAGSYLATLPYLKVIGALVIALLLGMVMQVGRPVLDYSRPGIGLIANKFL
RLGIILLGFKLNLIALAQAGIKTIALAVVVVTFTILVTYQLARRFGVDRHLAILTASGTGICGAAAVMGISSQLTSDDDP
ATKLRHQENEVVAVAIVAILGTLFTLIEIGLKPLLHMTALQFGVMTGGSLHEIAHAVAAGSAGGPVSLDTAIITKLSRVL
LLAPVAILVGIWYQKATRQANPTGEKQPVPIPWFMLGFILASVAGTFIPGLAALVPSLVKLAYLLLGMAMAALGMNVNFS
VLFTRGKNALVAAGISSVLLLILVATLSKTFF
>SEQF1778_EEI65293.1 LysR substrate binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVVAQTGSLTAAAQQLFITQPAVSQQLASLEADLDVPLLVHHGRRVKLTLAATELVAYAKRLGQDNQAVLKRLRLAQTPP
LRLGATRSLGAFLLPQLLAKVIAAGYQLEVTIENTAVLSQQLLAGQLDAALIEGNYSRQDFAAAPLGSAPFIGVTAQAEA
PATLPALFDQLLIVREAGSGTREILTTWLAAHNAQLSDFRQTLALSSPTAIIELLKQGVGISFMYRALVANELARGDLFE
LPLAGFPLEHPLNLIYLKESSFAAEFGPLVATAREMLGN
>SEQF1778_EEI65294.1 hypothetical protein HMPREF0534_1376 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVDVWGGLADFASGVLPATGGTKPDAGPAGDSLYQPGLLNGGGLAGLCPGRADPARFLQGPVVFLHGAV
>SEQF1778_EEI65295.1 VanZ-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVPYNLHPFVHVDPEFLANILLTGPLGVYCYLWRPHWSWWQVALAGLVPGLVIESAQFASDWLVHTLRVVDIDDVITNWA
GLVLGYVVVWGLDHTPLRTLIKPFRLR
>SEQF1778_EEI65296.1 hypothetical protein HMPREF0534_1378 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDRDLNASRNILTWALDPKKHIKYLERQAAIKAAKKAGITKDKLPKAIPARVLVTTN
>SEQF1778_EEI65297.1 putative transposase, IS605 OrfB family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKKAYQYEKIINGLKSRRAIKEKHLRADSKQLEQLSKQIRYYSARRANLLTERYRQIARQLFAEYELIAIEKLDAKEMR
KKNQKGSGATNRGKNRKLAKIKPYEIALLLEQMADREGKTLLKVDSYKTSQVEFGTQYQKVVSVNGCLSTLEN
>SEQF1778_EEI65298.1 hypothetical protein HMPREF0534_1380 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSDLSLNFVSKIERKQKQNIIIKTLMALASALNVKPSDLLKGSKGPASNRRKHVDLLSRQLYKLPEGE
>SEQF1778_EEI65299.1 integrase core domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVLPQHSIERRTFMGTTILSFSDRVVIETLHNEKRSLQYIANYLGFSKTTIFNELHRLDVAYQARLAQADFEKKVTQRGR
KSSLTTNLKQLIEEKIKVQKWSAEQVAHVVGIAYKSIYNWIDQGLLDLQLKDLPDHGIRRHRAKEKRGTFSHGRSIEERP
ASVDTRQEFGHFEADTVLSGKRKGQAVATFVERKSRLTIVKRLNGRDSQSMKQAIVELAHQLNGKLKTLTVDHGKEFADF
HTIEKLTGTPVYFAHAYSPHQRGSNENRNRVLRRFIPKGKPIEELSNSELTQINWYLNSRPLKWLNWHSPIEIFLLNLRQ
>SEQF1778_EEI65300.1 hypothetical protein HMPREF0534_1382 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MARLDQKSIEQLGINKVEDALWNVRDWADFFFSENDKTPLLDGNILIYSRQIARNKLNDLLT
>SEQF1778_EEI65301.1 Fic family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKELKVFNYQTLNDLRLTTKMVEKLNQIYELKGKTAHVSLKSKDIMDKLLAVAKIESTDASNRIEGIATSDARLKKLVSQ
KTTPENRSEEEISGYRDVLATIHENFQYIKITPNNILALHKELFNFTESTWGGEFKNIDNSIVTTFADGHQETRFTPPPA
YLTPELVQDLCTAYNNAITNNSFPPLILAAAFMLDFVSIHPFRDGNGRMSRLLMLLELHQLGFEVGKYISLERLIEKTKA
EYYRTLLESSGTAWSNNDNHYGPYVDYFLSIVLQAYRELNTRIDFTNDTEKDPESLVLTKLRNSLKPLSRRELMNLIPQY
GESTIKHVLAELRKKNIIKLVGRGRASRYTVND
>SEQF1778_EEI65302.1 site-specific recombinase, phage integrase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTPFFEGEKMIKKMTTGKHKGEYQVRIQPINKITGKRESWPVDYASNRKTAKSLERQMWADYEEGLQLADGSAIFADEF
QKYIDERKDTISPVTYRDWQNSATEFKKYFKKTKIKNITERLVEQFAHDFIKQHKATVGRATVIDHRLTHMRSFFKELEG
KVVKKNPVPEQYLDKFFRKNEFSVGKQRYLFTSTELKAIKAQIQTELNNTTIANWGTRLAIWIDLETGMRPGEIQALKFK
NITTEDGYSTFKINDSWSDYARKFNGTLKARPKGYSRYCLPISQELVDFLVTYQQRQKEFLKYHDLTNPEGLLFLNLHDY
RKCVNNIPITQKSMNEMLKKICNKLGIHSDGSQLSMYSFRHTLCTKLANKPGISYPWASERMGNSLSIFMRVYVKTDRDI
DRKMMDNWMK
>SEQF1778_EEI65303.1 hypothetical protein HMPREF0534_1385 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFGKEILNGKQLCEKLGVSTTILYELLDNGLPFHQLTTASRKYYNLSEVENWLLNAGYRQKTIWTK
>SEQF1778_EEI65304.1 hypothetical protein HMPREF0534_1386 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEAKDLIGNTLIKKITNSKGNTWKPVLRQRWVGKFKGLKEYSRSSLKDNYLILEVGGYFDGLIFNPDPFIVVDGKRIYLS
YENSIPGLCRIVLVDIRALELSKKYDFNDKYQGFDSERDKYHIAKFKSFDEMKKIAKKQYSINNELPTYDIKMVWEQDKT
SETYGTRHYSVTTNVGLSEELDEELLKA
>SEQF1778_EEI65305.1 hypothetical protein HMPREF0534_1387 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNKKNFNWQQAINMNKDIFLEYFAQASGLSKAKRQPINLMEEEHRIGVYFSSAAYLEWLNKINDMKHEIMILKTKK
>SEQF1778_EEI65306.1 hypothetical protein HMPREF0534_1388 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPRRKHHHKKDKVFFFKSTPQFLKMAELAHLNKEFNHKTNSKESIKLLPPQISDTVITNGGSHKSQQDRLNFTNNGIYAY
SKCLAQDVVQIDVHSLLPTWAFNLRLLDHKHKQLFLRKKEIEATPNYIDNKRLVNERKRDKDNLNRFCSENGKTKNEQYV
NRLRCTYSGMNMIYDMLQFWGLENMINCVNDGFIIRINTRNFDKKYQQFQQRYQRKVSQLTFSMKKWNYALIKNDQEYLL
FNSLTDYKCRNHCFDVGANYYEITGESLREAKKNNHVNSLILAKAEKQEKEAVYIVEKQVFDQDPFNKATKENMERLDEV
KKIMNEAGIQDINHGILQPHYYRFELDKNDSQQSKEYINKITKSMLSNQIFMLENPPASTVNLFGQVIKATEINDMEQYL
RDHKDVTVNDFVPPIIRPAIVSIDDWIKQLLNDKEIKHNLYLYNSVAIVLQVWANENSRDPNTIIKKLNDALVKDRFSNL
SIADKVYNDPATILVDNQLMALNEHHVYTADSKAVNSIIDKYIDASGKRFIRNSRNNVYELLNNNKYKNGKLDIGFKSEN
QTIWIDNKGVHTENPLLKKVGNYVNVDYINYEADKDLFNSEEYSQVEAFLTHISDGYYRQITCMLALIVLQDPNIVPTLR
RAFILYGVPGSGKTVLAKLLCKIFDEPNRPSRILCSEPNINKVFTDPNLIDANDTKKGKLVLWFDDFQSDGRSNEIKRNV
GTVINAVTSNEAKTGAAKFQQYHDIKLPSLIVLSTNDVPQIKHIGTVDRIFVIKSSKRLTDDPNISFSSNIDAWINNKKV
QEAFFCIILNTAVDILNMSKDEAKSIFDKSNSAQSALSNLNSSIEAFFEEQNITSLYDLVGMQAKKLFDVYLEGEKNFAY
ATTYRAFCDQIEGLGLNLRRKHFNHKNYQKVICSKNDNLTQEKLNLMLKENELSPDQVEYWDNEIHRQRGKVSSWHCGYD
ELKEKYKNDQKLFMPFEF
>SEQF1778_EEI65307.1 hypothetical protein HMPREF0534_1389 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLFNNHGYVGQSRSVRSQEAIEEHEVPLNQITRDLINEVIEELVDEETIDKEQENWLKAIPVYVWKNQSPTSWHHTGKYY
HETYHYDLPLYAEEFIDDPEIVDESVKEHKRELSERRQALLNESTEPEYEVYYYSKDIWGGTRRHPKIVDIEHGYGVAKK
ESSRLYPVSVSDEDWPNNSYYSIGGNYITVKQYSGYLELVAKHPEFKGTKRKLNKVLKALGVTPLTLKQELSKVGGNN
>SEQF1778_EEI65308.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEYGYARVSTKGQSLNDQVSQLMEIGIDKSNIYSEKFTGTTTNRPKFDELTNKVRNGDTITVTKLDRLARNTREALNVL
DPLMSKGIKFNVLNIGILENSTIGKLVKTILLAVAEMERDMIVDRTQEGKRYARLHKRDYHEGRPKRLITPHYQAAYDYL
SNHTYKDTARAFNISVSTLQRIKKQIENS
>SEQF1778_EEI65309.1 hypothetical protein HMPREF0534_1391 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKYGYVSGWLKDSVIKQDGFEYQAKILLSMGIPYDHCFADVFRHKNKERYQLFKFLTTIAQEGDILVVPTLTCLYSNVR
ELCCLMYMVEDTGIIIQSEDMDLSDDSDSSDWIIASQLAHLDYLHYLRQKRASKAIKKAKYQLSLNKGGRQKRVITPIYR
QAYEYLRTHTYSETQLKFHLSKSTLYRIKRQINNKKQPINTPQSYDASRGDLQ
>SEQF1778_EEI65310.1 hypothetical protein HMPREF0534_1392 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNRELVYWVDLTGPAALDEIVRLTIMDTNDNVLFNHTFNTKLVDWWYSGLNGIRPEETYNQQPFENYKKEIQSIFNKAS
RLITFNSFTFFLDKQGVTIPTNTTVEDLADPFRVLGDANDTIDNLCAYYGYPLSDNIYNRTGVDYAKAINYCWHEMERYK
EAQENK
>SEQF1778_EEI65311.1 hypothetical protein HMPREF0534_1393 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MINMAKHKNYTTSVSLSNVARNKLIALANMEEITQKELLNKLIDKEIDQLNSKDKGIYAYILKAIEIKDEFRNKKER
>SEQF1778_EEI65312.1 hypothetical protein HMPREF0534_1394, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYKTITKKHGNIGVDIDVQNEIKALVMVSGHKFIRGYMRDLIDEQVKHLSAGEYEDYRTFLRRIEEQEK
>SEQF1778_EEI65313.1 hypothetical protein HMPREF0534_1342, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
LKIIQDFYPIATEPNNDFVQIALNAAQRNYPNDIKLDIINGATDASVFTLNRPDLPVVILGCDDWNVAHQTDEYTTISSY
VATIKAYKQIIRDFFKE
>SEQF1778_EEI65314.1 hypothetical protein HMPREF0534_1343 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGENTLYHKRARDILGKPFTFIVSRYLGVSIAIGIVTGLVIGVFR
>SEQF1778_EEI65315.1 chloride transporter, ClC family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKHPWLLIPYILGTFIVAWLIGKIVKPYETDVVRSGVTQLKAVLLGKHRIHWWPVLWRKFVASLLTICPGLFLGREGPS
IQIGACIGACFNEKFFHLTDKDKYLLMEYGVAAGLSAAFSAPLAGTMFLLEEMTHNFNSRILIPALTSSIVSAFITFLFF
GTKPCLYIPITTKLPVASYPCYDAMLEEK
>SEQF1778_EEI65316.1 methionine-R-sulfoxide reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKNELKKLTPMQYAVTQMGVTEKPYSGKYDRFDEPGIYVDVVSGEPLFSSLDKYDAGCGWPAFTKPIKKRVLTEKRDQS
FGMERTEVRSKEADSHLGHVFTDGPTDRGGLRYCINSAALQFIPVDKLQEKGYGEYLSLFDK
>SEQF1778_EEI65317.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEYWNENWPIMLDDVQQHATMVLSSLAIALVIAVVIILLFLRREKWLNSLIYFFSLLYSIPSFAFFALLLPISGLGMKT
AIIVLTIYSEYVLLRSFITGIRGVDPQLIEVGVGMGMTSRQVFRQIQLPLALPAIFSGIQVALASTMAMATIAATINAGG
LGQLLFEGLQGQQVVPILWGTVLTMALTLICAGIVQLISWILLHRWKGVLNN
>SEQF1778_EEI65318.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEPIIQFKHVEKRFNDQTVIPDLNFTVNKGEFITILGSSGSGKTTTLKMINGLIAPSAGEILVDGQKLRELDLVKLRRH
MGYVVQQIGLFPHMTIGQNIAVVPKMLHWDKEEINNRVKELLSLVQLNPAEYMNRYPQQLSGGQQQRVGVARALATNPPY
VLFDEPFGALDALTRMELQREVKKIHESLAEKTFMFVTHDINEALFLGQRVMIMHEGRIVQFATPEEIVRHPATEFVEQL
LGTIRQNQDLWRQQYD
>SEQF1778_EEI65319.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGSGSLLGQIIQYFQTNSGQYWQYVGQHIILTVVTLVISMIIALPLGYIGSRIKPVAQFCVMFAQLLRIIPSLALLFLLI
PFIGTGVVPALIALIVLALPPLLINTILGFNEVSPLYKEVGIALGMDQRRLRRQIEIPLALPYILNGIKLALVEIIASAT
LATYIGAGGLGTLIFTGLGLYDMSYVVIGAVSVAILSLLAMISFDFLIRKVQKHDRTNYSI
>SEQF1778_EEI65320.1 ABC transporter, substrate-binding protein, QAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRFKKIVALSLLSIAGLLAGTITPAVASAASNKPIIVGSKNVSESKTVSEIYALALEHEGYKVTRKPNISNNVIFSATQK
GEVDVYPDYTGTIVEAYLKKKGTGKSASQMAKLAHDGIQKDGLTTFKYAPGDNRQGVAMPTKDAKKYHITNLSELQKNAK
KINFASQGEFEKRADALPEMNKVYGKFDFKSIKDYDVNLLYKIMEQGKAQAAPVSTTDGQLATGKFTLLKDNKNIWPPYN
LVPVVNKKAAKSHPKMEQALNKVDAKLTTKQLTDLNKKVNVDGQNYKTVAKNWYNQNMK
>SEQF1778_EEI65321.1 transcriptional regulator [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKISTRFSDSIHILAFINICQGIIPLTSNNIASTIETSPVVVRRLMSALNKAGLINTVHGAADPALAKSPENISLYDVFL
AIEGDAHLFTIDERTNPQCIVGGNIQETLDGFYQQAETAAKAKLARISLQDVIDTIRVKQALKDAEKERRN
>SEQF1778_EEI65322.1 hypothetical protein HMPREF0534_1351 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYMVTGATGHLGQHVVKQLSKLISPDNIRVGVHNPAKASQFKDAGYEIAAIDYYDVAKMTAAFSGIDVVIYIPSITYLV
KDRIDEFENSLTAMFKADVHNLVDVSFISAKIALKPSPM
>SEQF1778_EEI65323.1 hypothetical protein HMPREF0534_1352 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPELSYIMTNVTGEEIGYDPVTVKKFAEIYAAEGDGNELASMYQAAAMGLMNQVTDDFAHITGHQPTDMKEFLIKNY
>SEQF1778_EEI65324.1 hypothetical protein HMPREF0534_1353 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFTLPLGIGQIHAMHELFKTNPRLAALVLLLIMGIAIYYKFHR
>SEQF1778_EEI65325.1 putative phosphopentomutase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQNGQSYQRIFVVIIDSLGIGATADANHFESLGADTLGHLGEHFRVRLQLPTFQKMGLGNLHPIMGMSSLEKLHAAYGQM
SSISTGLSDRESQWEMMGLATTAEPDVFIDGVPLEIATNFARKAKRPLLSNSLMNIRTALKDYGLEQLATGGLLVATASS
SSVWLIAHEQTISVGELKEDCQILRKMLDNSPYTIENVNGLLFSGNQAANFYPQELYRFPLAPASPTVIDCLLEEGYAVK
LIGKSTQFFGLDHYEITGNNQESFVQLQELIEKKFTGICIAEVGEIEQFGKARNPEGFGTELMRIDHELTKVIDKMQDDD
LLIVTGNFGNDPTYPGEKHTREYVPLLITAPQIKQNISLGGRSFSDIGATILDNYDLGDKLPVGNSFLRKLFSAYR
>SEQF1778_EEI65326.1 cadmium-exporting ATPase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKLSNKQKLIIILVIAAIAVVLQFGFHLQLFAQILVTVVGAIVAFSMFIGMIKTIRSGKYGVDLLAIMAVVATLAVSEY
WAAMVILVMLTGGDALEDYAAKKASTELKALLNNSPQTAHLITNGKTSDIPVNDVKVGDQLIVKPGELVPVDGIIKNGEG
LFDESSLTGESRPVSKTAGDEVMSGSVNGDNAITLQVTKLAKDSQYQQLVKLVKEAESTPAHFVRLADRYAVPFTIIAII
ISSLAWVFSGRPERFAEVLVVASPCPLILAAPVAMVSGMSRASRNGIVVKTGSVLEKLAVAKTGAFDKTGTITSGQLTVD
KILPTGKIDSTQLLHYAASAEQQSSHILARSLLSYATAYNVSLSTVDQLKELTGKGILATVDGREVKVGKLKFVSPKNLD
QMLAATAIYVSVDGQYYGAITFTDHIRPEAKQTMNRLKRLGVTNLLMLTGDQAVIADKVARQVGITQVKADLLPQDKINA
LKAIPTNEHPVFMVGDGVNDAPSLVTADVGIAMGAHGSTAASESAAVVILKDDLSRVAKAVRISQETLRIAKQAVLIGIA
ICTILMLIASTGIIPAFFGAMLQEIIDTVSILWALKARKMTD
>SEQF1778_EEI65327.1 Matrixin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEINFVFRLLKRIFIIGLLVGGGWLYFNDAQVQATANQTAWNVRDRIAKLIGRDDTSSNDNSNLHLNDTNNGSSKSDQE
PTTEQQTSTQTSIPSTGRWATNQATVYVNTNNAQLDAATNTAIQSWNQTGAFTFKPVNNQSKADIVVTTMNRSDSNAAGL
TKTSSNSLTRRFMHATVYLNTYYLTDPSYGYSQERIVNTAEHELGHAIGLDHTNAVSVMQPAGSFYTIQPDDVQAVQKLY
TNNK
>SEQF1778_EEI65328.1 hypothetical protein HMPREF0534_1357 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPKDGMSVVHFSSFAPVTEMILQSLPAVKDKEDQKAPAIKNFDQLRQRLNSHARFLILDLEFFQDQQKHRNGVAQIAGKM
FETQNSFNYYLYAQNMSAERQLAFLRQYDLRLSEVNGYEVRQIFNRIFHFIAVERPDYIVSWDNGTDFESLNYEANRLKI
RKEDRPWRTIQSLDLEKLVAKEVWKSKSGISLEKMCRLLHLPRVKYHQAQNDVMAIEQILKFYACDLERELNCR
>SEQF1778_EEI65329.1 hypothetical protein HMPREF0534_1358 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKAAHLVEHSQKANEKKQVIQETKFIDILSKVATVVAILMYVSYISQIKNNLAGNYGAPLQPLVAALNCTLWCIYAYFKQ
QRDWPVFWANFPGIIFGLITFITCLH
>SEQF1778_EEI65330.1 pyridine nucleotide-disulfide oxidoreductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTVKNIIIGFGKGGKTLAKFLAQHGEQVLVIEKSKQMYGGTCINIACLPSKRLIIEAAHGTSFEDAVDGKNVMTSQLRQ
KNYQMLASEENITVLDGTAHFTGNHTIDVQTPDGQTLSYKGERIFINTGATPTIPDIPGLKSSPFLMNSTQAMEQPKLPR
ELVIIGGGYIGLEFANMFTSFGSHVTVLDHHQTLLPREDDDVAEMVIQNFKDNGVRFEVGVDIKAISEQDEQAAITFARA
DNRETTIFADKILVATGRKPATADLDLQNTDIKVAKNGAIVVDDLLHTSVPNVWVIGDVKGGPQFTYISLDDFRIIKDEL
FGNKERRVSDRLIVPTNVFIEPSLAQVGLTEKEAQKQGKDYLLFKMPAAAIPKAKVLKDTRGLLKVLVDPQTNLIIGATL
YVQEAQEIINMIVLAMRAKLPYQILRDQIYTHPTISEAFNDLFKQPVNKKE
>SEQF1778_EEI65331.1 hypothetical protein HMPREF0534_1360 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHIMAKGKVKTSDKRSVRDVKLDELAGLLNEFDVNTIGALVKSLKKS
>SEQF1778_EEI65332.1 helicase C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNSVLQDAILNGLISTQYQGNTLLGPQLLTNNQSSTIWQTLRHELLSCKDFTWSVAFITLDMLVPFKAVMADLAQQGVH
GTIITSNYLNFNHPAMFEELQKIPNLTVRIADLNGFHTKGYLFDHGKYQTVIIGSANFTRSALLVNKEWNLKLSSRQEGS
FFQQLTTELDAVKHESTVLTSEWITEYRKNWQPPKTRVTQPEKLKPIEPNQMQQAALGQLSTLIKTGAKKGLVVSATGTG
KTYLGAFAVKKYQPRRFLYIVHREQIAKKSLASFRRVIGGKKTDYGLLTGNRHDWNAKYLFATVQTLSQQAVLNKLKATE
FDYILIDEAHRAAAPSYQRILNHFMPQFWLGMTATPERMDNQDVFKLFDYHLAYEIRLKDALAAKMLAPFHYVGVTDYEV
DGEVITETSKLNQLIAVKRVNYVFNQLDYYGYCGDQPRGLVFCSRQAEAKELAVQFAAANHPAIALTNQSSSQERAKAVE
QLEAGKIEYIITVDLFNEGVDIPSVNQIVMMRNTQSPIVFIQQLGRGLRKYPGKDFVTVIDFIGNYQHNYMIPLALNQDN
SRSKDQARREVKVPTNFDVSTINFTKVAEEQILVSLDKVKLDSMRELRQAYHDLTNQLGRTPLLDDFYRYGSVDPRVFAQ
NSQLNHYGDFLEKMGIELKLTNYERQVLAFLTKELLNGKRPHELILLQRLLRGTCLIDAFKAELKHQNIRVTPAVLQSVD
DILSLQFFNVKAGKQVKKDQYGGQPIIDHPDLLTYQLNSKIRAGLESHNDFKRLFIDVLTTGLEIAKQYDLKQAFTLYQQ
YDRKDVCRLLNWPLDVSAPLYGYRVAEDVCPIFITYHKDVEEKRNAIYNNQLQDGRSLRWYTRTPRHLSSDEVQRLLAGV
KEGKPQVKLHLFVKQSDAVGKEFYYLGPAYIQPDSVREELVGPKKKAAVGMDLVLEHPLTSTMMNLLAM
>SEQF1778_EEI65333.1 PAP2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKDYLQFYQHITAPFYRYPWTIPLLRAVNKFVVWTMYVAYIVILVWVGKNNVLKAGPFLLIPGIGFILLSFIRQRIDAP
RPYEEFSINPLILRQKTGDSLPSRHVFSATVIAMCGLRLNLILGVILLVLAVVSAITRVIGGVHFPRDVVIGFICGFICG
SFLFLV
>SEQF1778_EEI65334.1 oxidoreductase, aldo/keto reductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKEKGALIMKNVQIGGTSWKVSNVALGIMRMGTLAVTKAIDALEAAHDAGINFIDSADIYGNDPQLGRGSSEIHFGEAL
KKSSLTRDDFYIQSKGGLFANADNKITRYDSSKKHLIAAVDGILQRMGIDYLDSFLIHRPDPLMEPAEIAEAFDQLQASG
KVRHFGVSNFNPQQIALLQAATNQRLLIDQVQFGLKHTGMIDFGLHTNMTDDAAINHDGGLLEYTRRKQMTIQTWSPFQY
GTFAGTFINNDQFPELNAMLETLAQKYKVSKNAIAVAWILRHPAHMQVLLGTMTPAHIIDSAKGSDITLTSQEWYDLYLA
AGNDLP
>SEQF1778_EEI65335.1 hypothetical protein HMPREF0534_1364 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLSIKIHKTENTKNAMAKEKSFAIALGQGGMWDSNPRVPDPQTGVLTKLHQYRHNNC
>SEQF1778_EEI65336.1 NLPA lipoprotein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRKKRRNIIIWSVVALIVVIAGYFSFIRPQQQAKRTVTVGIMAGSKQDDEIWNSVSKTAKDKYNVTLKFKRFTDYNQPN
KALENGDVDLNAFQHKLFLQTWNKAHKTDLVSLGDTFITPIRLYSKQYKSVKEIPNGGTIAVPNDASNESRALFALKNAG
LIDLKKGTKLATVSSISKNPRDLKIKELAADQTARSLDNVDAAVVNTNYAQAAGLNYKSAIFVEPVNKDSKQWVNIIAVK
DSEKNNKIYKDVVRAYQTEKTKREIKKLYGTAEIPAWDLNFNK
>SEQF1778_EEI65337.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANPIIDLDNISVTFKQRKQVVHAVKDVTLKVEKGDIYGIVGYSGAGKSTLVRTINLLQLPSAGSVTVNGTVFFKDHQQQ
ISNKELQEKRRKIGMIFQHFNLLNETSVIENVLFALKHTDLDDDAKEKKALELLDLVGLKDKAEFYPVQLSGGEQQRVSI
ARALANDPEILISDEATSALDPQNTNQILDLLKRLNDKLDLTIVLITHEMDAVKRVANKIAVMEYGQIIERGTLQKVFLQ
PQQDLTRQFVGGSLAAVDTLKAFDLGHLDDDEELLQLVYDANNVTKSIIIGLYKKLQVEASMLYGNIEVLAGSPVGTLFV
VIKGDADKRQQAIDFLKENDVTVTKIDDRRIWNE
>SEQF1778_EEI65338.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIGGFGMNNLIPNVIQLGWGGDNGWGTSIVQTIYMTFWPAIFGGILGLIFGVALVVTEPGGILENRIVFSIVDKVVSVFR
AIPFIILLAFIAPFTQLIVGTQIGTTAALVPLSLGVFAFYARQVQVALESVDHGKIEAAQAIGATNWDIIIDVYLREARS
ELVRVSTVTLISLVSLTAMAGAIGAGGLGNTAISYGYDRFNNDVTLVATILVLLFVLIIQVVGDILAKKLNHQDR
>SEQF1778_EEI65339.1 peptidase dimerization domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVSEKVKVLQDLIKIHSVNGNEVEVARYLQKLLANHGIDSKVDEFGDRRANLIAEIGTGESKKILGLTGHQDTVAVPNP
DRWQHDPFGGEISGDYIFGRGAADMKSGLAAQAIVLIELKEAGQLPSGTVRFIATAGEELGTPGAYRLQKQGVADDLDAL
VVGEPTGGNVIFAHSGSMNYRVTSYGKSCHSSHPQNGINAIEGLLKFIEEEKHLFDNTKDDQYLGKVQHSITVIDGGSQV
NTIPDSASLQGNIRPTASFNNVKVADRLNDALEYINHTTPFQL
>SEQF1778_EEI65340.1 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIVTEKAPAKLNLSLDTPMRYFDGSPRWDMVMVSADLADYVTVETHRRPATIKVYTNSGFLPNDQRNLAYQAAHILRSRF
HCKDGVTIRIKKQIPVAAGLGGGSSDAAAVLRALNSIWRLGLSLSELAKIALTIDSDVPYCIYNKLAHVTGHGEKIELLP
PQPHYWAVIAKQKISVSTPQILRQINYEKLQHLNNEALLTNLKKEDWQEATKYMGNVLEPLTMKFYPEIGRLKNKMKELG
ADVAQMSGTGPTVFAICHTESRAKRIQNSIRGFCRDVHVVTLL
>SEQF1778_EEI65341.1 hypothetical protein HMPREF0534_1316 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPNSIVEIKKKLDERIGEHVLVKAQAGRKRITTHHGILSKTYPAVFVIHLNDEQGTLDRVSYSYTDLLTRNISIAFDEAE
>SEQF1778_EEI65342.1 dimethyladenosine transferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNSPEIGSRTRTRAIMEKYGIRTKKSFGQNFLTDLNVLKNIVEAADITANDNVIEIGPGIGALTEQLAQAAGEVLALEI
DQDLIPVLKEVLSPYDNVKVINQDVLQANLPELIKKEFKDPSRPIKVVANLPYYITSPILMNLLASPVEWATICVMMQKE
VAQRLTAKPGTKQYGELTLAIEYQMQAKIAFDVSRKVFVPSPNVDSAIVVLTPRTNPLPVQPFDKQKLFGFIRGCFAHRR
KSLWNNLQSVIGKDPAVKEKMTAVLAQLDISPQIRPEKLTLEQFIELANALHRQNLL
>SEQF1778_EEI65343.1 ribonuclease M5 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIRIKEVIVVEGKDDTKQILKAVDADTYETNGSAISTADLAKLKKLQASRGLIVFTDPDFNGERIRKIISEAIPGVKHAF
IKRKDGVPTEAHGSLGVEHATPAIIKSALEHLYTQTTTPQQAFKREDLQKWGLTGQADSRKRREKLGQLLGIGYGNGKQL
IHRLNMFQVDRATFEKAIKQINQEADHE
>SEQF1778_EEI65344.1 hydrolase, TatD family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKVSNHQHQQLVYDSHTHLNDDVFYDDVPAFINRAAHYGVTEMNIVGSNQLLNTRALKLGHQYDNLHPIIGWHPEDIAN
WNSETKKELRQQLADPLVVGIGEIGLDYYNDEHSPHQQQQEIFAEQLEWARELKLPVSIHCRDALADTYEILRNAHVDEF
GGVMHSFNGTSEWAEKFVDLGMMISFSGVVSFKNATEVHEAALVVPLEKMMVETDAPYLTPLPYRGKQNEPGFTKFTVDA
IADLKQVDAGKVAYKTFTNARRLFLENEERGL
>SEQF1778_EEI65345.1 methionine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEQKPTYYITTPIYYPSGKLHIGNSYTTIACDAEARFKRLRGYDVFYLTGTDEHGLKIEQKAEKLGMKPQEYVDQMAAQ
IKELWKKLEITNDKFIRTTDDYHEKAVQKIFQQLLDQGDIYKGKYTGWYSVDDEEYFTESQLAEVYRDEDGNVIGGKAPS
GHEVQLVEEESYFFKMSKYADWLMNYYKEHPDFIEPQSRMNEMINNFLKPGLEDLAVTRTSFAWGVKVPNDPKHVVYVWI
DALSNYITALGYGSDDDSLFKKYWPADVHMVGKEIVRFHTIYWPIMLHALGLPLPKHVIGHGWLTMRDGKMSKSKGNVIY
PETLVDRYGLDATRYYLLRAMPFGNDGVFSPEDFVDKVNYDLANDLGNLLNRTVAMINKYQNGKLLGTNDATTDFDADLE
QTASDVIAEYKELMDKTRFAEALAAVWKLVSRANKYIDETEPWVLAKDDSKKDVLSDVMTHLAKSLRIIAALIQPIMPHA
PKQIVEQLGIEGTDLSLTDLQFNDFPAEAQVVAKGTPIFPRLDVKAEVEFIKSKMTVNEKKKGRKAMAEAKEKAQEAAQE
EKADGKKPIRIDVFDKVELKVAQITAADHVEGADKLLKFHMDDGTEEGRQILSGIAKWYPDPSVLVGKKVLIVANLKPRK
MRGELSQGMLLSAEKDGNVQVVTVPDNLVPGMGVE
>SEQF1778_EEI65346.1 hypothetical protein HMPREF0534_1321 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKITMGMTTWTEHPVLIHDEQRPVRLDEYAQHFPVVEVDTFFYALPQISTIQNWLATVPPTFQFIVKANQKMTLHQRNQE
RGELEQVFQQYRRIISPLVAAGQLKTILFQFPPYFDATVRDFSYLRLIREWLGNLPIAVEFRNQTWYKKEILPSVLDFCR
ELNFTLVAADEPHNTPTSVPFVLATTNPDLAMLRLHGRNRKGWENQGKEWRKTRTLYRYSTEELQFFKKQIESLQPQPKE
LCVIFNNNSAKDAAPNALSLQKMMNIEFEGLAPKSPEQLDLF
>SEQF1778_EEI65347.1 hypothetical protein HMPREF0534_1322 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLKNKGIRHIFYQEKATTKKKGSHLVALPFKVDGKVVFFE
>SEQF1778_EEI65348.1 transcriptional regulator, Sir2 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDATIQKTFDDAKNIVFLTGAGISTASGIPDFRSANGLYTQNRNAEYYLSHRYFASDPEGFYEFCKQNLYFPDAKPNVIH
QKQAALTQQDRATVITQNIDNLYEEAGTKHLIDFHGNLFHVYCEKCHETVPVSEYLNSRLHQKDNGPLRPDIVLYDEGIK
QEDIVNSVKAMQQADLVVIVGTSMKVYPFAGLLDYRNPNAKVIAVNQQLLQFPFDFQMVQDDATKFFDELKV
>SEQF1778_EEI65349.1 hypothetical protein HMPREF0534_1324 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEERITLNKENQALLDQVNSLYPEGSVFVQFHGDKSGYVRHDQATQQTIPGALVIIVTDLTAPNYTASHELLHLLMLLK
GFPQIFFQLSLGDKELDEQMMIMSTDLYNIAMHRVVVAEQRKHGFITDEIEEQYLKGIEHTLTPEKEKDDERTLRLLTLL
DALVFYGDHISKYEKTLAEKYPLALAAAKKMYAEITKKPIKSPFDMRRSIVKIYSLFDQQMQEWGLPALHNNEYTTLSPV
LSARQLRLEMRQVFEIYHSDMKERGTDKRAYVGLRRSDGQNSFTLPAPAQNAPEEFKKIYDQPVKEFLEQNSIPYIVRK
>SEQF1778_EEI65350.1 hydroxymethylglutaryl-CoA reductase, degradative [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTDWQHGFYKLSADDRRQQLAKARHLSPMEEQVLANTSSDLGDELVENYITDYSLPEGVALNITVNNRPYVVPMVIEEPS
VIAAASNGAHRVSRSGGFTAPRQDRQLVGQVVLDDVIDKAAVKAWLLEHQDEILTIANQAHPSMQARGGGAKSMKVRTPG
NFISIDLEIDVCQAMGANSVNTMAEAVGKWLTDQGFHVITAILSNLATQSLQAATCKVDFRYLATPEMDGKEVAQRIARL
SDLAQVDPYRAATHNKGIMNGIDAVMIASGNDWRAIESGAHAYAARDGQYRGLSTWEIQDDYLVGKIVLPLPVGVIGGSI
GLNKMTKINYHISQIKSAEELAAVTASVGLAQNLAALRALTTTGIQAGHMKLQYRSLAASVGATPAEVPLVVAQLKQQSH
VDQALAKEILSTIRKDQVND
>SEQF1778_EEI65351.1 putative exopolyphosphatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVENLAIVDLGSNSARMAITEIAPDGRFREIRRVKENTRLSEGMGREKILQESAIERTIAALKRFKKIYQEIPNIKVRAI
TTAAVRQARNRQEFLNRVQQEVGIHLQVLSGKKEAYYDYLGVVRTLRLNHCLILDVGGASCELILVQQRKARNLISIPVG
AVNLSEQYHLNGYVRSADLFRAQVAMNERLTKIPWLRYATRVPIVLLGGANRTLARMTQSYHHHHRRNGSIHGYQLSSRV
VFATYRELLNRNLAQRKRLTGLEPERADIIIGGMLPLVTLLQRNSDGRVIFSESGVREGIITEYVNQRKRHHD
>SEQF1778_EEI65352.1 tryptophan--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEEKHVILTGDRPTGKLHIGHYVGSLKNRVELQNTGKYDTFIMIADQQALTDNARDPEKIRRSLHEVALDYLAVGIDPK
KSTILVQSQIPALSELTMHYLNLVTVARLRRNPTVKTEIKQKKFGESVPAGFFTYPVSQAADITAFKADTVPVGDDQEPM
LEQTREIVRTFNRIYQQDILVEPEGVFPPKGQGRIPGLDGNAKMSKSLGNAIYLSDDADTVQKKVMSMYTDPTHIKVSDP
GHVEGNTVFTYLDIFDPDKEQVAKLKEQYQAGGLGDVKIKRYLNEVLEAELSPIRKRREEYAANIDYVDQVLKEGSARAN
EVANQTLKEVRDAIGINYFG
>SEQF1778_EEI65353.1 DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRSKRNKTIDFTLEEASPELLNQIIQPTDNLQTISNKIINGDSFKVMTKLSPHQVDLALIDPPYNLNKQYDGLSFKKMST
SQYQAYTQKWIDLLKPLLKENASIYVFSDWATSMALAPILEKNFTIQNRITWQREKGRGSLKNWKNGMEDIWFLTANPSD
YTFNVDQVKQRRQVVAPYRQDGVAKDWQATKNGNFRDTMPSNFWDDISIPYWSMPENTGHPTQKPEKLLAKIILASSNPN
DFIFDPFAGSGSSLVTAAKLNRRYLGIEQSLLYCAWGQYRLNQIKDDPSIQGYTDGVFWERNTLAVQRKIKRQQRASEK
>SEQF1778_EEI65354.1 nucleoside diphosphate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVKDEYTLVLVKPDGVKTRHIGDIITRIERKGYNIEALKMIDPSEKKLRQHYFDKVDKPFFPELLEYMTEGPIVGIVVSG
TNVIQAIHNMAGATNPGEAEWGTIRGDYGREWPDGNLRNIIHTSDNVNSATREIGIWFPEFDIKDKQ
>SEQF1778_EEI65355.1 hypothetical protein HMPREF0534_1330 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENHERETEQARVDNVEKQIDQQIAATTKAVEDAHRETRAVERNYSENASINRYEVDDIAESRSMIEQQRQLVSRAAESE
SILKHQLRTLKNLKGSPYFGRIDIQDPGEDKSETLYIGTSSLMNEDKTDFLIYDWRAPISGVYYNGTLGKVNYETPAGMQ
TTELKKKRQFTIKDGKITNMFDTNETVGDEVLQAALGKQNDQYMHNIVATIQKEQNDIIRDTRSDLLLVQGVAGSGKTSA
ILQRIAYLLYHSRTELNADQIVLFSPNNLFSHYISEVLPSLGERNMRQVTLEGFIRRRFEGLQVETLFDRYEERQKPENA
SHVVADFIESESFMTSIAHYVEKMTIEDLQFADIRFNGQVFFSADHVKDLYKELPLTMAPADKLVQLKNKLIRELQRRVK
DEAKKDWVAKELDSLDLQQLHNLCGKKSIDDFKDEDEQYVYLSRRLAKRRLRVIADAIYNNYFLDFYNQYNKFLHQVEVP
KTISQREWATMILAFQDEIEYHRLELMHAAPLMYLRDLISGTGQNRSFQYVFIDEMQDYSTAMLIYLKHAFPQAKFTVLG
DSEQALFKPLQLPEELLNKLSGVLKAKRPNLIALRRSYRSTTEITNFAKALLPDGDKIISFTRHGKKPRLLVRYSDKESQ
QSLLDETLKLANEHETVAILTKNQEQAVVIYQLLRRQKVENIHLLDKDASELPKGILILPIYLAKGLEFDAVLAADVSAK
NLANTDEVGMIYTMASRAMHELVLLSNGSVSDAINEKAGRLLTIEYQLPNKN
>SEQF1778_EEI65356.1 transporter, CPA2 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEFIAVLAGLLLATQIVAHLCRRVEIPEVIGQILVGIIAGPAVLDWVHLNSMMNEFQEIGVIILMFIAGLESDLSLLRKY
LKSAVVVALLGVIVPIVIMGPVSYMFGFTKLESLFIGVIFATTSVSISVAVLREFNRLDSREGATVLGAAVADDIIGVIL
LSVMISVINGSSNNGHGNGQPLGIVLLMQLVFFGGTYLLIRWLAPYLIHMSDRLLTVASTSVMAMIICLGMAAIADYVGL
SGAVGSFFAGIAVANTKHKEVVDRSFIPIGYAMFIPLFFVSVGLNMRFDNIGESFVFVIVMTILACLTKLLGCGAGAKLS
GFSMPSSYIVGSGMVARGEMGLITAQIGYEAHLLSPMYYSDVITVIIIATVLAPFILKNALKRSANELE
>SEQF1778_EEI65357.1 aminotransferase, class III [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKMLKTKLKQEKTNRDVLLEEKNAFATAARIKYYDIVLDHGRGAMVTDIEGNDYIDLLASASSTNTGHAHPRVVQAIQE
QAAKMIQYTPAYFANSQAARLAPRLAELAPISGPVEMVWGNSGSDANDAIIKFARAYTGRQYIISFTGAYHGSTYGSMSL
SGVSLNMTRKMGPMLPGVVKVPFPSPWERLTNESDEAFVERMFHQFMLPFETYLPVDEVAAILIEPIQGDGGIVKTPPAY
MQKVYEFAKANGILFAIDEVNQGMGRTGKWWSIQHFGIEPDLMSVGKSLASGMPLSAMIGRKEVLESLGAPANVYTTAGN
PITAAAANATLDVIQNEHLLERSQRLGKKAAEFFKLEQQKYPFVGDVRMYGLDGGIDIIDPVTGKGDTEATTKLMYRIFE
LGAIIISLRGSILRFQPPLVITEKELDQAFAMIDQAFAELAAGKLAAPANAEELGW
>SEQF1778_EEI65358.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSFWKTITRKEDPRVYDNKDGHLVRSLKVRDFLALGVGTIVSASIFTLPGEVAAMHTGPSVVISFLIAAIVAGLVAFAYA
EMAAAMPFAGSAYSWINVVFGEFFGWVAGWALLAEYFIALAFVGSGLSANFRALFVPLGWKLPASLSNAFGTEGGVVDIV
SVVVIILVALLISRGVSQAARVENLLVILKVFAILLFIVVGLTAIKASNFMPFIPQYHETANGAFGGWQGIYAGVSMIFL
SYIGFDSIAANSAEAINPQKTMPRGILGSLVIAVVLFIAVSLVLIGVLPYQQYANSAEPVGLALRAAHHSGVATVVQTIA
VLGMFTALIGMSMAGSRLIYSFGRDGMLPKWLGKLDKHNRPNRALWTLTIGAVLIGAFFPFAFLSQLISAGTLIAFMFVS
LGIYALRRREGKDIPNPSFKMPFYPVLPALGFLASLLVFMGLDYQAKLYAGIWFVFGLIIYFAYGMRHSSMAKKEDGQNV
KNETEAGENK
>SEQF1778_EEI65359.1 endonuclease III [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLPPDEIRYSIKVMRQTFPEAGTTLIADTNYHFLLATILSAQSTDQSVNEVTPALFARFPLPADLAGVEPAEVEPYIKRL
GLYRNKAKFLVKTSQQIVTDFNGEVPHTLKELMTLSGVGRKVADVVLAECFNIPAFPVDTHVSRVARRLRIVEPKASVLA
IEKKLMKTIPPEHWLDAHHSMIFWGRYVCTARNPKCQTCPLLSLCVTGQNNVI
>SEQF1778_EEI65360.1 FMN-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNKMREIERTQYIGNGFSAYGGELKVLLTYQDDKIQDLQVIKHHESEMGKWALDELPGKIIAANSADVDGITGASATSR
AIKEATKDALQQAQQN
>SEQF1778_EEI65361.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKEVKRIIFVVLFCEFLICLGMSLIFPVEPFIKNEYHFTAFDMGVMSSLFAFVQFIASPIVGRISDKVGRKPMLVWGLL
IFAIAEFVFALAQHLWLFDLSRAVDGLSAAMFVPTSMALAADITSEKDRAKVIGWLSAAFSGGLILGPGLGGMLAHVNYK
FPFWVAGILGLISTVVAWRFLPHDEDELFKSETKNPENELLTGGWNQLKQIMTPILITLFGMIFVASFGLAGFESIYSLY
VNEVHNFDLNAIALVLTLNGIISLILQVFFFDRLVRWLGEVRLMRYSFFFSLVGTIMVIYDHNHWHIIIATLFVFEAFDM
LRPTITTLLTKMSKTNQGLLNGVNMSLTSVGNIIGPLISGYLLDVNYQYPYWFVSIFLIISWVITLVLGRERKAAAND
>SEQF1778_EEI65362.1 putative L-lactate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTRKVGVIGMGNVGSTVAHYIVAMGFADDLVLIDKNEAKVKADALDFADAMANLPFHTNITVNDYSALKDADVIVSALGN
IKLQDNPNADRFAELPFTRQEVKEVAQKIKESGFNGKIVAITNPVDVITSLYQKITGLPKNHVLGTGTLLDSARMKRAVA
ERLNLDPRSVDGYNLGEHGNSQFTAWSTVRVLGRPLTELADKRGLDLEELDKEAKMGGWTVFQGKKYTNYGVATAAVKLV
NAILSDSLTELPVSNFREEYGVYLSYPAVVGRDGVVEQAQLDLTEEELQKLQTSADFIKEKYQESL
>SEQF1778_EEI65363.1 hypothetical protein HMPREF0534_1305 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANFKNQCFQRFIQPLTPADNLSSFIYTNALLRSANKLKYPLLHFWTLEDTVILGLKDQRLPHLSTALTSLTHRGFHYFM
RNSGGLAVVSDDGILNLSIFYPWHLEDHELTIDEAYQRMVDLIQAAFPSLKIATGEITHSYCPGSFDISVNGQKIGGISQ
RRNKMGVTVMLYLSVGGNQQDRGKLIRDFYDTGLQQSQNKWHFPDVWPGAMTTISKALNTQLSVQDAIQRIQSVVQIIVP
DSLNNLMWSPNFISTLNKELISMERLQERLEKED
>SEQF1778_EEI65364.1 HD domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNHFYDEKLRREKVFRDPIHGQIIVDNQIIMDLINTPEFQRLRRIKQLGTSSFTFHGAEHSRFGHCLGVYEITRQMCNYF
QRNYPSQHPGDGLWDDHERPVALCAALLHDLGHGPYSHTFEHIFHTNHEQITRQLITDSSTNINKILQRVSPDFPHQVAS
VIDHTYENPQVVQMISSQVDADRMDYLQRDAYYTGTNYGKFDLDRVLHVMRPVKRGIAFEISGMHAVEDYIISRLQMYLQ
VYFHPVSRSMEVILDHLLMRAKYIYQHPNDFEPDFTPHMLMPFFNGKFTLDDYLALDDGVLTTYFIHWTHSRDDILSDLA
SRFLNRRPFKSVIYDQNTQKLLPTLRKLIQTAGFNSQYYTAVNDSFKLPYDTYHPQDSNTQTQIELLQPNGDFVELSQVS
TLVASVSGREAGDQRFFFPKEMLETRNNIEIFEPIYEEFQSYIKNNHIINPKEQK
>SEQF1778_EEI65365.1 Cof-like hydrolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIKLVAIDIDGTLINDQREITPQTVTAIKKASAQGVKIVLCTGRPMTGVKAYLDQLGLNDSDNEFVISFNGALAQSTSG
NVLVNYTMPFNDYADWQTYCIKEGVKSQIETRDYIYTINRDLSPYTVYESDLVSMPIRYRTFEELSKMQDQYVIAKAMMV
DTKEQIDKAWAELSAEMRDRFSIVRSEDFYLEFMNKQASKGNALQLLSEELGIKKEEVMALGNAQNDDSMIEFAGLGVAM
GNSIPGTLKIADVTTADNNHDGVGKAIEKYVLK
>SEQF1778_EEI65366.1 hypothetical protein HMPREF0534_1308 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTIKFFKKAMVGTAAVATIFALAGCGKQSASSSDTSSSSTSSSVRSSESKASKAYRTANKLIQNHDYEGAYEQLNQLND
HNAQTEALADDLQSYMDAQKAYENGDYDGAKNKLKSQKSTSPAMRNAYADLQSKVSSAQGSTSSQTSSSTNNSKQTNKQS
GSTSAATQQSSSAANQAASDATSDNVVQQFANKMGFSGSQGYQIMPTGKTGNVYKFEVRQNNSDNTVANLIGIYQYNSQT
GAVTKIA
>SEQF1778_EEI65367.1 ribose-phosphate diphosphokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTQQYFDQNLKIFALNSNRPLAEKIAKHVGVDLGKLSVNRFSDGEIQINIEESVRGDNVYVIQSTSAPVNDNLMELLIMV
DALRRASAKTINVVMPYYGYARQDRKARSREPITAKLVANMLQNSGVDRIIALDLHAAQIQGFFDIPVDHLMGAPLLAEY
FINQGVAENAVVISPDHGGVTRARALAEFLKSPIAIIDKRRPRANVAQIMNIIGDVKGKKCIMIDDMIDTAGTISLGSQA
LIDAGAEEVYASCTHAVLSGPAIERLQNAPLKEVVVTDSIQLPKEKQIDKIKQVSVAPLIGDAIKRINENRPVSPLFKQV
FQSAQLEKK
>SEQF1778_EEI65368.1 UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKRNAIILAAGKGTRMRSKLYKVLHQVCGKTMVEHVLTQLEKAKIDNIITIVGFGAETVEQRLGHRTKYALQEQQLGTG
HAVMQTKNLLANEDGETIIVSGDTPLFTAETFEKLFEYHEQRHAAATILTSIAPDPTGYGRIVRNDVGIVERIVEQKDAT
IQEQAIKEINTGVYCFDNKKLFAALSKITNDNAQGEYYLTDVIGILKQENEIVTAYKMDNFDESMGVNDRVALARANKVM
RNRINTHWMREGVSMIDPDTTYIDADVKIGRDTVIEGGVVIKGHTEIGNDCYIGAGSRIIDSKIHDGVKIISSTLQEAEM
HNGSDIGPNSHLRPEAEIGENVHIGNFCEVKKAYIGEGTKVGHLTYIGNATLGKNINVGCGVVFVNYDGTNKHHTNVGDH
AFIGSNSNLVAPVNIAKDSFVAAGSTITDSTEQYDMAIARARQVNKENYAKKLPW
>SEQF1778_EEI65369.1 pur operon repressor PurR [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIRRSNRLVDMTRYLLEHPRSLVSLKFFGERYDSAKSSISEDLGIVKHTFQTWGQGRLETIPGASGGAVLTPFYSKENA
QAAIDNLVDRVNDDSRLLPGGYVYLSDLIGQPEILRQIGKLIATQYVDTDVDVIMTVETKGIPIAQSVAMYMNKPFVIVR
NSSHITEGPTVSVNYVSGSVQRIKKMELSRRTLSAGANVLVVDDFMKGGGTINGMKSLIKEFDANLVGITVFAEGRPVNG
QRLVDNCTSLIKVETKDGTEKKIAAQAGSFMENVFDKKVEN
>SEQF1778_EEI65370.1 ABC 3 transport family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTLSFMRHAFVASTFIAIICGIIGVFVVARNLSFLTHTLSEIGFAGGAFAVFAGWPALNGMILFTMLSSVIVGQMSIKE
SRREAVISAVSALFIGLGILFLSLSSQSASSATSILFGSVVGISLNEVWQLVYLSILVLIILLLMYRRLKFDSFDSIGAQ
VSGINQTVISVIFLLLLALSVSVAAQIVGSLLIFILLTLPAASAKYFTHGVARMIILAILFSLLGTWLGLFLGYLTDWPV
SFFIAVIEVIIYTTALIYSKFIESN
>SEQF1778_EEI65371.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVVSVDDLTIAYGNHTVIDHLSFSINEGDFLVVVGENGVGKTTLVRSMLGFLKPKSGTITIPQSTRLGYVPQFRNIDEE
YPLSIRDFVALNTKPRLLPWLTKSERNRVERMIRENNLTKIAERPLGLASGGEKQRAYLAQALLPNPNLLILDESTASLD
NEMKYELLDLVTRFQQNGLSVMFITHDWDLAKQYGTRFLYLSPGSYSTGPINELPSPVKGDKK
>SEQF1778_EEI65372.1 ABC transporter, substrate-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKYIISISSIVALLVIILGLSFVPWKSMGKNQKPIRVVTGMNFYGEVAQKVAGDHGQVISFIDNASVDPHDYQPNTKQA
QQVAKANVVIENGLGYDSWVNKLVKSSSNHNKIKVINVASLTGKKDGDNEHIWYAPETVEKLANDLATQYGKIDPQHAKD
YQRNARKYLASLQPLNEEIAKVKRQVNPNNNRVAVSEPVFDYALENVGYQIMDKHFEKAVEDGNDPSPKDIEEIQQAIIN
HQIAFFVDNSQTSDKVVDNLVKLAHEHNVPVLKVTETKPNGYDYMQWMLKQYQALSRIQQKEN
>SEQF1778_EEI65373.1 DEAD/DEAH box helicase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFSELGLSDSLLKAIKRSGYEEATPIQEQTIPMVLEGKDVIGQAQTGTGKTAAFGLPIIENVDTENLNIQAIIISPTRE
LAIQTQEELYRLGKDKHVRVQVVYGGADIRRQIKSLKQHPQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEMLNMGF
LEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAKELTTDLVDQYYIRARDYEKFDIMTRLIDVQDPD
LTIVFGRTKRRVDELSKGLIARGYNAAGIHGDLTQDKRSKIMWKFKNNELDILVATDVAARGLDISGVTHVYNYDIPSDP
DSYVHRIGRTGRAGHHGVSLTFVTPNEMDYLHEIEKLTRVRMLPLKPPTAEEAFKGQVASAFNDIDELIAQDSTDRYEEA
AEKLLETHNATDLVAALLNNMTKEAASEVPVKITPERPLPRRNKRNNRNGNRNNSHGGNHYRRKNFRRHQHGGGHRNDNH
GKSHSSRHAFNIRHRKED
>SEQF1778_EEI65374.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKMKLAEIAKAINAQNDIEQWKDVEVTSVSFDSRHLDQGSLFVPLQGAQDGHQYVPSAFTNGAVASLWASDHEITDQTHP
LLVVSDPLAALQQLGKYYLHKINPIVVAVTGSNGKTTTKDMIASILSTQFNVAKTYANFNNEIGVPVTLLNMESNTEAVV
VEMGMDRFGQLDFLSKLVNPDIAVITMIGEAHIEFFGTRDKIADAKMEITHGLKEDGTLVFNGDEPLLEERVKDLAQRQM
RFGRQLSNNLYATSVHDEPRQLSFTVNEWPDEEFTIPMVGEYNINNALAAMEVGKILHITPAHMKQALANVELTENRAEW
VKGKNGEQILSDVYNSNPTAAKEVLKTIAETPVAGRRIAVLGDMLELGDAAAKLHASLAEEIDHQKIASVYLVGEQMKNL
KDKLIQEGYPAEDIYHYAASDLQQLIADLTTTLTGDDIVLLKASHGIHLEEVLTALKAE
>SEQF1778_EEI65375.1 peptidase, M48 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLYQQIARNKRKTILVMFGFFVLLALIGAAIGYLFARTAIGGMIIAAIIAVIYMSVIIGQSTDVVMRMNNATEVRSASDA
PELWHIVEDMALVARVPMPKVYIIHDPSPNAFATGNDPEHAAVAATTGLMEKMNREELEGVMAHEMTHVRNYDIRLQTIA
LALASAIAMLVNFAGNFWWIGGRSSSDDRDNPSSIFAILGSILLIILAPLAATIAQMALSRNREYLADAGAVELTRNPQG
MISALEKLKTAVPMKHVDPSSSALYISDPEKNAKHHPFSNLFDTHPPLEKRIERLRQM
>SEQF1778_EEI65376.1 LemA family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLIIVIVVIVLLIAIYAGLYNSLIQLRTHAQESWSQIDVQLQRRNDLIPNLISTVKGYSKYEAGTLEKVTKLRTELNSI
PDSDHAKKMEVSNELTGTLRTLFAVAENYPDLKASAEYQKLMEELTNTENKIAYSRQLYNSTVAALDAKIQSFPSNIVAK
IHHFQQMDYLQVPEEAKAVPKVSFDDLGD
>SEQF1778_EEI65377.1 low molecular weight phosphotyrosine protein phosphatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEAMFKQMVDDAGLNGKINVDSAGTSNEEEGNGPHPGAAKTMHAHGLSTDGLISRPITRQDFEWADYIICMDNMNKYNL
QRIAPAQDRDKVHLAYEVIPGKEDQEIPDPWYTHRFEDTYNSLNETLPLWLDKITKELS
>SEQF1778_EEI65378.1 phosphoglycerate mutase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAITVYFVRHGETYFNRFARLQGWSDTPLTEKGEMDAKKIGQVLADLRIDYLFSSDLKRAVDTARLLIADHLTATVKEPI
QKKFFREVFYGSFEGHSNEEGAIWASYLEGKRFRRIGELVDEFGVEKAHDLLKAADPAHLAEDSNELNARVEQAIAFLQS
LPDESNVVVVAHGSIIQYIAGMYGKPGYKYENLHNGALMKVQLTVRDVEITGYNQFKL
>SEQF1778_EEI65379.1 fructose-1,6-bisphosphate aldolase, class II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMAYFDNGNKLFDDARKNQYAIGAYNINNLEWTRAILRAAAETNTPVLIQVSMGAAKYMGGYKFVKDMVEDQMDAMEIKV
PVILNLDHGDYDAAIECINLGYSSVMFDGHKLPIEENYAKTKEIVQLAHSRGIAVEAEIGKVGENQDTSSGELADVEDAM
AFAAMGVDRLACGIGNIHGIYPANWPGLDFDRLQEIANAIDIPLVLHGGSGIPREQVQKAISMGIAKVNINTEFQLAFQD
ATRKYIENELDLNKEQKGYDPRKLLLPGTDAITAKMKDMIEWLGTPAVA
>SEQF1778_EEI65380.1 triose-phosphate isomerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKPFIIANWKMNKNVHESVAFVKAIKEKLPANKEIGIAAQAVSLYNMKKVAGSSNLQIIAQNASAELEGPYTGEISMRS
LADAGVTYVMLGHLERRRLFNENNDSINQKVLAALNAGIIPIICTDEEMVQTEVNGQIHYVFRQLKSVLKGVPANKLSQI
VISYEPSWAVGSTHQANPDIAEEGCLAIRQSLVEMYGNEIGEQVRILYGGSVNPENIGQIMSKPNVDGALIGRASLEIES
FLQMINYIELASKQKLQVI
>SEQF1778_EEI65381.1 hypothetical protein HMPREF0534_1295 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQIFVDINASENGNGSQEFPFKYIQQAADIAQPGDYVQVMPGEYHEEVHPQYSGTSDKPIIYASAKQNRAIITGADRVTG
WQHVAGPVWQLKLPNAEFGNYNPYNVLVDQTFNHAGEIFLNNKAMYEVDQLAKVETPSENKFSRDRKFTCYTWYTEQLPA
EDSTVIYANFQAQNPNDEHVELTFRETCFYPEKAGLNHLILSGFTMTKAACRWASSQYNKGIIGTNRGQGWKIAKCDISH
AKCSGISLGRNIVPTIDDDKVYQHRIKNNTIHDCGQTGIIGVEGNPSPIIEHNSIYNINVRQNLVSDDVSAINLSPAIGA
KILRNCIHDCTRGIWLGGKVEDTQISRNVFYNNSLPDSFEVTNENREDLVAALGEDIEIKDSMGVTLIDNNFLLSDCTLK
LESKGVLLVHNLINGSVEWLSNTNVAENDPYYHRLYQQNTPESAPYDSSCFYNNVFIRKNLRSEMAKLIAFAHKQASEQP
IDNHISDDNAAYVGLASGQRSYIPANKAGNIFMNDEQEDVKVAIDSSEDGVFLNSNICDYLNEDTSRVIAVGVTPETARD
FDTDFLGNHREGISVTAGPFDTKEEYSQRLFRLLF
>SEQF1778_EEI65382.1 pyruvate, water dikinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKREQMNVLWFDELHRSDVNLVGGKSSSLGEMTSAMKIPVPYGFATTTHAYRQFMAETGLNDQINKLLAEINDYENADE
LHRVCSHIRQMIVEAPMPSEIAMTIKKAYAALSEKMGETEPFVAIRSSATAEDLPNASFAGQQESYLNVRGAEMVLAKVQ
ECYASLFTDRATYYRHKQHFPHEKVALSAAVQMMVFSKASGVMFSVNVANGNDAQIVIDTIWGLGEYIVLGKVTPDHFVI
NKNNLQVVERSVVPKAIELCQTPGGGVHEEPVPADRAIRPALTENQIHELAGYAKEIEKHYGCYMDMEFALDARTDRLWL
VQARPETVWSNKNNKQATKESTVSMNKTKKILVKGLPASPGVSTGKVHVIADPKDIDEFEEGEILVTLMTSPDWVPAMKK
AAAIITDNGGMTCHAAIVSREMQIPCIVGTKSCGQAVTEMLQDGEQVTVDAKNGVVYQGDLAEQFNGEKETTECHHAEYY
APTATRVMMNLGDPELAEKYAELPVDGIGLMREEFLWTTYIHDHPLYLIETGHPEKVVDMLADGIAKVARAIAPRPMVLR
FSDFKSGEYRNLTGGDKYESHEPADLLGWRGASRYYDPKYIEAFKLELAAVKKVRREFQLKNLNVMIPFVRTVAEADKVT
KLMAAAGLHRGPDFKVYMMAEIPSNIILADQFNKYVDGYSIGSNDLAMLILGCDRNNDTVAHLFDERNLAVKRAISHLIK
AAHQDNKTVSICGQAPSEYPELASFLIQQGIDYISVNPDMVKETKQNVARIEQRIILDNATGKGRQAVENYAW
>SEQF1778_EEI65383.1 sortase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKDKKRSFEWLWWTAVVVLLLISVVLIFNQQIKSYLVGSYKPEITRQTVQSNQKKKATYDFQSVKDLNLQTAAKARANK
QSINTIGAITVPAINMTIPIANGIDNTTLALAAGTLRPDMKMGEGNYALAGHNMAHGSKILFSPLYYHAKVGQMIYITNM
DRVYEYKIYQREFIAATRVDVVDNTPEKIITLITCDATGTNRLMIRGKFVKSEPFTQAPQNVQKNFSEKYTTGR
>SEQF1778_EEI65384.1 hypothetical protein HMPREF0534_1298 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKMTKSILHTRLVLIGLILILVLMAIPAYYWMKDTNKYLAAQHNSRMSPIIMVPGSSATQNRFNPLIRKLNEDSPKKHS
VLRLEVMNSGKIVSQGWINRGDNEPIIVIGFENNRDGYQNIKKQAQMVNKAFERLTEEYNFNNFKAFGHSNGGLVWTYWL
EHYYSEYKDAITIKRLMILGTPYNFAESSVSHPTQMFSDFVKYRSRIPKNLLVYSVAGTETYTSDGLVPEGSVDAGKYIY
QKQVAHYTSMTVTGKDAQHSNLPQNKQIVRLIEEYLLDPNDNGNPNSQNKQGATQN
>SEQF1778_EEI65385.1 PTS system, lactose/cellobiose family IIC component [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHEKIINRIIALHRYSFVRITRQTLIMIFPIVFIGTMAKMILKTVFKPDGFIYNIAFLDVIPQNVLRIIQFMLTSISQLT
LGILGIYTVYMAAKFTAKRYRRDGKFAGITAILTLLLMSYRYGKSSPQFSLSFYQRLLSGNSLLIVLILGYGIGQLYRWL
TPPKDGDNTNALPLLQERSFSSMLPMTISLIFGVTVALFLNSNTIYHAWSTSYSTLVTTAQEHRQLWLTLLATMGLTIFD
WLGLGVPYTSMALTSGDSFTANLNYALAHGTPWNVPYEFLGSSLYNSFANFGGDGLILALIVAILLTSNGSYMHCVAQWT
ALPTLFNFNYAAMIGLPVVFNPLFLIPFVFLPIVNILLASLAIAIHLIPSTPYPVLQGTPGPLISFLGTNGNWGILIFTL
VLLLIDSAAYIPFVKMALVVENRLTLAEQDVISHEKND
>SEQF1778_EEI65386.1 ribosomal protein L31 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQGIHPDYHPVVFEDSSTGYKFLSGSTATSSETVKWEDGNEYPLIRVEVTSDSHPFYTGKQKFTQADGAVDKFNKKYGL
K
>SEQF1778_EEI65387.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKMIIQGGNRLSGEVTIGGAKNSTVALIPAAILADTPVEFDTVPDILDVHNLMIILESMNVKSEFSHGVLDIDPTQIVE
AELPSKAIKSLRASYYFMGALLGRFHRATLTFPGGDNIGPRPIDQHLKAFKALGATVSEEKGTVHLDAPNGLHGSRIFLD
MVSVGATINATLAAVRAEGTTIIENAAREPEIIDLATFLNNMGAKIRGAGTDTIRITGVKTLQSMNTHTIIADRIEAGTY
LSLAAALGDGVMIHNVIPEHLESFTSKMIEMGVELQIDSDKIYVPKSSHLHPVTVKTMPFPGFATDLQQPLTPLMSLADG
DSTIVDTIYPKRVKHISQLQKMGMKIEAHDGMIIVKHTEKLHGAEVSAGEIRAGAALTIAGLMADGQTVINNAGNILRGY
DRIVWKLNRLHANVSIEDDSSVKIG
>SEQF1778_EEI65388.1 CTP synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKYIFVTGGVVSSLGKGIVAASLGRLLKNRGLKIAIQKFDPYINVDPGTMSPYQHGEVFVTDDGTETDLDLGHYERFID
NDLNKYSNVTTGKIYSEVLRKERRGDYLGGTVQVIPHITNAIKDKIKRAGESTDAEVVITEIGGTVGDIESQPFMEAIRQ
MKEEVGSENVLYIHTTLVPYLRAAGEMKTKPTQHSVRELRGLGIQPNILVVRTEQPITDDMRKKIALFCDVDPKAVVESM
DVHTLYEIPLNLQKQGMDQLVVDHFGLNVPEADMTEWTEMVNHIEHDLTKTVKIAMVGKYTDLQDAYISVNESLRHAGYP
VNAKVKIDHFNAENITPENVEETLKDYDGILVPGGFGNRGVEGMITAIKYARENDVPYLGICLGMQTACIEFARDVLGYT
DANSTEFDTNTKHNIIDLMADQADIENMGGTQRLGAYPCKLKPGTVAAAAYGNQSMISERHRHRYEFNNDYRQEMENHGL
VISGVNPDRNLVEVVEIPDKKFFVAAQYHPEFKSRPNHPEGLFAAFVKAAAEDK
>SEQF1778_EEI65389.1 DNA-directed RNA polymerase, delta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MCTNLDLKVFDGQDKSELSMIEVAHAILAHHGEAMAFVDLTNEVQQYLGKSDEEIRERLAQFYTDLNVDGSFISLGDNTW
GLRAWYPFESIDEATVGENEEDEEDDRPKKKRRKVNAFLADTDDDDDVIDYDNDDPEDEDLDTDDDTDSEDDYDDDTDDF
SDDDDDLDDGIEGQLSELHDEEDEDEDDE
>SEQF1778_EEI65390.1 hypothetical protein HMPREF0534_1304 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNGKYYLRYIEHQDGQETPVQIKFEDELIRLRRRGNVETNLFLDPTQETIMRYQTEYGMIKIDVLTESLEKDVDVKAPAG
HLSVKYQLKQAGQLIGSYQLELQFAA
>SEQF1778_EEI65391.1 2-dehydropantoate 2-reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFTIVGAGAMGLRFGVLLQEAGNEVDFVEGWQPHYDKMKEQGGVYVTREHQNKHLVPVNVYTPEEYTATDADFVFFELK
QMQLDDMLQRCKHFFKDQYVLTAMNGMGHVEKLLKYFPKEKLVAGTALVATILTGPGEVEFVGKPGMGTTNWANYTEKPD
AKTEELMAELKKANFNPSLKDNFMGTLMAKVVFNSVVNTLCTMFEITMGEYANFDKADELSRQLIDEAYDVCERAGVQLV
NTRAEELESVNYVSKVGNPHHYPSMYQDMSHNRPVEVDYINGYFAKLGRKYNYEAKTHAFVTNLVHLAEATREKN
>SEQF1778_EEI65392.1 hypothetical protein HMPREF0534_1261 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTTILSFQHRVVIETLHSEGCSLRYIANYLGFSTTTIFNELQRLNSEYQAELAQTDFEQKVSQRGRKSSLTKSLKHLIE
EKIQVQKWSPEQVAHAYSPHERGSNENRNRVL
>SEQF1778_EEI65393.1 lysine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSQELDQMRVRREKMEELKEAGIEPFGRRFKRDHLAQDLHDKFDQYDKEELNEMGAKVIIAGRMTRKRSSGKAGFADFVD
RTGKIQVYARKDMVGDEPYHVFKRSDIGDFLGIEGDVIKTDTGELTVRAHKITFLSKALRPLPNKWDGVTDPETIYRQRY
LDLISNPESFKRFHQRTAIIKAVRKYMDDNGFTEVETPILNTQAGGANARPFITHHNALDIDMYLRIATELYLKRLIVGG
FERVYELGRIFRNEGMDPHHNPEFTTMETYAAYFDFQDVMDETEGIVKAAAKVVSDDGKITYQGHEIDLGGNFKRITMVD
AVKEKTGIDFSDESMTDEDAKKLADEHKIEYKPYWTKGHILNAFFEEFVEDTLIQPTFVYEFPVEVSPLAKRNADNPAMT
DRFELYVDGSELANAFSELNDPIDQKERFEMQAKEKANGNDEAEPVDLDYVQALEYGMPPTGGLGIGIDRLVMLLTDAKS
IRDVILFPTMRPEKETKDSKKGKKNKKK
>SEQF1778_EEI65394.1 TIM-barrel protein, nifR3 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKWKIGNVEIPNQVVVAPMAGVTNSAFRVICKRFGAGYVVCEMISDRGIVYHNQRTLNMMDVDPEEHPMGIQIFGGTKET
LVEAAKYVDQHTAADVIDINMGCPVNKVVKTDAGARWLLDPNKVYEMVSYVTDAVKKPVTVKMRTGWDDKHILAVENALA
AERAGASAIAMHGRTRKQMYTGQADWNILKEVASQLKIPFMANGDVKTPEDAKKILDMTGATAAMIGRAAMGNPWMLKRT
EHYLETGELLPEATPEQKIEMAKDHLNRLVDLKGEYVGVREFRGLSTYYIKGIPRAARTKVALVEAETLDEMNDIFDRFA
EQTAERAAKRQQA
>SEQF1778_EEI65395.1 chaperonin HslO [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVIFRFFFRINFKEKFKMKTTDYLVKSMTKDGKFRAYAVNATQVVQKAHEIHDTWSASSAALGRTLIGTILLATSSLQGE
AGMTVKIQGNGPVGFIIADGTAEGTVKGYMGNPHVSLPANDKGKIDVAKAIGNQGTLSVTKMAPGDKTPYTGEVNLVSGE
LGDDFTYYLAQSEQIPSAVGLSVFVNPDENIDVAGGFMIQVMPGASDEEISKLEKTLKSLPLVSQMLRDGDTPEDILKKI
FGDDLKILETMPVRYACDCSKERFAHALASISKDDMKKLIDEDHHAEAVCQFCGKKYEFSEDELKKIYAEMTANDDKKST
DEK
>SEQF1778_EEI65396.1 ATP-dependent metallopeptidase HflB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNNRKKNNFTHNVLFYAVMFLCIMGIAYFFFGGNASTGQSKTVSQSEFISELKSNKVKSVQLQPNGGVYKVTGTYRKPQ
SNNDNSANNTGFALTPQRNNKVTQFQSSVLESDVTVSQLQNYANRHNVKISTRAEESNSVWMNLLLTVLPLVIMIFFFYM
MMGQAGQGGGGRGVMSFGKTKAKPSDAKKNKVRFSDVAGEEEEKQELVEIVEFLKNPKKFTKLGARIPSGVLLEGPPGTG
KTLLAKAVAGESGVPFFSISGSDFVEMFVGVGASRVRDLFDQAKKAAPAIIFIDEIDAVGRRRGNGMGGGHDEREQTLNQ
LLVEMDGFQGDEGIIVMAATNRSDVLDPALLRPGRFDRKILVGRPDVKGREAILRVHAKNKPMASDVDLKEIAKQTPGFV
GADLANLLNEAALLAARRNKTEIDAADLDEAEDRVIAGPAKHNRVQSEQERKTVAYHEAGHTIVGLVLNDARVVHKVTIV
PRGRAGGYAIMLPREDQMLMSKKNAMEQIAGLMGGRAAEELVFKSQSSGASNDFEQATQIARSMVTQYGMSDKIGPVELQ
SSGQVFTGQGYDQSPYSEKTAALVDEEVRRILTEGHETALHIIETHREQHKQIAEALLKYETLDEKQILSLYKTGKVPDK
DVAAEDEEARAQTFEESKRELERLENERHDEAKDNQNDSSDTKSDNSNDSQSSDDSDNSEDK
>SEQF1778_EEI65397.1 hypoxanthine phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNDIERVLYSEEMLGKRMDELATDLTKDYKDKRPIIISVLSGAVLFTVDMIERLDIMAQIDFIDVSSYFGGLGSTGKVK
LIHDLKTDVKDRHVLIMEDIVDTGHTLKYLMDLLADRGAKSIKVCSLLNKPEGREVDVEPDYVGFTVPKEFLVGYGLDYK
GFYRNLPYVGILKPSVYQND
>SEQF1778_EEI65398.1 tRNA(Ile)-lysidine synthetase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVGGANMADLQQAFERHLVRSRFFATQDKVVVAVSTGVDSMVLLDLLQHLPSKYRPQIIVAHMNHELRKQSELEERFIRQ
YCKQNDLKLAVAHWPQDLHPQTGVENAARQARYQFFREVMKDNQASILLTAHHQNDLAETMLMKMARGGQLSQLVGIRDW
RPFASGTLIRPLLPFSKQQLKKYALQHHLKWYEDKTNKDLSIQRNRFRHAIIPMLEEENPQLLSHLESYHQQLTDLLAWR
DQEVADQLAACVDQQGRMILARLLQNKEIIRKEILRQWFNQQGIYDIKDQQLDELLQILENEQKPQQIIELPHRYILEKA
YATCVLKKLDNPLENLQKPQDHVIKLEQWYQVDPINLMAVSAEKSFFNDEEQVVLQWLAPDQFPLRLRQWRQKDRIRLKN
GHHQLVKRVLIDQKVSRKQRDQQMVLVDAHDEVVWIVNRKWSWFERPTGYQQTCRSCFIGIKNKEKKVNE
>SEQF1778_EEI65399.1 S1 RNA binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIEVGAKVSGKVSGITNFGAFVDLDDNQTGLVHISQISDKYIKDVHDVLAVGDEVTAKVTRIGDDGKIALSIKAAAPRE
HQDHHENNHHRENNHRDFHHERNNNFRGHNDNFRGGFSGRHHNSHQHEDFNDMLAGYLKESESRLSTLKRQTDGKRGGRG
GRRS
>SEQF1778_EEI65400.1 septum formation initiator [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGQSGSKVSQLNTPYARQVSNQKTYNRHVHKRRCQRIIAVFLVMFLIFGIQIFQSKRTLADINGNIRQAQSQLTKQKQK
NQQLQRQIKMLHNPEYIQQVIRAKYNYSKKGEIIYNLN
>SEQF1778_EEI65401.1 S4 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRLDKFLKVSRIIKRRSIAKEIADQGRILINGQPAKSSSRVTVGDTLTIKFGNKTETVKINRIVETTKKSEAEDMYEIVD
ETYAESFDQL
>SEQF1778_EEI65402.1 transcription-repair coupling factor [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVQIENLIEKTPSFKQITADLQPKNHQLITGISGSVRTELLSALSKEGQRPILVVTDTISHMQELASDLENLLPANRVYQ
FPVEEVLAAEVATSSPNYRLQRVLALNALINNEPAVVIASAAGLRRNIISPEYFAQSSLKIKTGGEVDPAKIRQQLSAMG
YQYQKMVLRPGDFAIRGSIIDIYALNTDNPVRIDLFDTEVDSLRYFDASTQRSIDNVEEVQILPATDFIIPSTEFSRVYE
ALDTEYKKVEKELSADDTDIKQQVANLFEPLLNALKNQHLPNELLEFSNLVYPAKHSLFDYLPDDGTIYFDDLTRIKQFA
KQMTKEDAGWFKDKVAHHQLTDVPDLSNDVSAIIKKDPHPQIYGALFKKGLGNIKLSQITDLKSRTMQRFFGQMPLLKAE
FQRWVDQGQTVVLMANSPERRKQIAQTLADFDITATETELTNIKPNVVQIVAANLNYGFEMPLAGLVVITESEMFKQVKK
VHHRPQKLANAERLKNYTDLKPGDYVVHVNHGIGIFSGIKTMEVDHVHQDYMIINYRDNAQIYVPVTQLNLVQKYVSSES
KTPHINKLGGNEWAKTKRRVSSKIEDIADELVDLYAKREAEKGYAFPKDDYLQKQFDANFPYNETRDQLRSIDEIKEDME
KPKPMDRLLVGDVGYGKTEVAMRAIFKAVTGGKQVAFLVPTTILAQQHYNTLMRRFEGFPINIALMSRFKTPKELKETEA
GLKDGSVDVVVGTHRILSKDVEFKDLGLLIVDEEQRFGVKHKEKLKQLKNNVDVLTLTATPIPRTLHMSMLGVRDLSVLE
TPPAGRYPIQTYVMEQNSSAIRDGIIREMQRGGQVYYLHNRVHDIEETVAWLQELVPEARIGYINGQMSENELETVLYEF
IQGNYDILVTTSIIETGVDIPNANTLFVENADRMGLAQLYQIRGRIGRSNRVAYAYFMYQPNKVLTELGEKRLAAIRDFT
ELGSGFKIAMRDLAIRGAGNLLGKQQHGFIDSVGYDLYSAMLSDAVAKKQGKKQTIHSDAEVELGVEAYLPTDYIADQRQ
KIELYKTIRQAKTDEEVIDIQGDLIDRFGDYPAPVGTLLLVSQLKNHADLAMIAEIKRQRDNINIKFTERASRLIKAPAI
IKELANTRFKATIGEDNQQLTIRLVIQPKMTTDDWLHQLLQFVTTLGNVIQADEKGAEK
>SEQF1778_EEI65403.1 aminoacyl-tRNA hydrolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDGKSDRAAFLRERNERTMKMIVGLGNIGTRYDETRHNTGFMVVDQLARDYHLGAFTHLKQEAVAVSGVINGEKVMLVK
PTTFMNDSGRAVGPLVDYYDIDLDDLVIVNDDLDMPVGKVRLKTHGASGGHNGLKSIISALGTKNFNRVKVGIDHPQHGT
VVSHVLGKFSKEERPKFDQAVEQAEHALEDWINGENFAKLMNAYN
>SEQF1778_EEI65404.1 CBS domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIMIFNSLIKPKATLTTLPETATLDEALTVLEDTGYRCVPVLDKSGKIFRGNIYKMHLYRHKARQGNMHLPVTALLKNA
TKFISINAAFFSIFFAIRDLPYIAVLDNNNQFYGILTHNSLLRMLAAGWNVNNGSYVLTVITPDERGALVTAAKEITRFC
QIVNVISLDPEDETMKRVLYTLPADVTKEKMERIVKRLEKKGLEVSEIEDLHQSY
>SEQF1778_EEI65405.1 Hydratase/decarboxylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTELNARQEEFAKALFEAYDTNTPLKEEEWKDVVTDDETAYAVQDAVVKLKGKPTAGYKVSLTSKETQDMFDADSPLYGQ
QVTERFLQSPADVDLQMLNEPLLEVELTFRAKEDLQPSDTLEDLFQKVTVAGALELPDARFVDWFPDLGKYNVMADCAVG
GLVVYGEEHDADSVFENVDDAANVHAVLFKDGEKLKEGVSSEVLGNPFKSLQWLVQKLAEQGKAFTKGQMVSSGTFVLPP
KLTAGKWEVEFDSGLGNVVVNAK
>SEQF1778_EEI65406.1 amidohydrolase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLKNVHVDNHEEVVDVRILNGKFSEIKANLTPHDGEEVIDGKENLLLPPFVDSHVHLDATLTAGQPEWNETGTLFDGIR
IWSERKQDLTKEDVKSRAKKTLLNMVGHGIQHVRSHVDVTDPHLIAARALLELREELKDQIDLQLVAFPQEGILSYPHGR
ELMEQAVKEGLDVVGGIPHFEFTTEYGWQSVHFLMALADKYDRLVDVHCDEIDDPASRNLEVLATEAYERGMKDRVTASH
TTAMGSYNDAYTYKLFRLLKMSDINFVSNPLVNVHLGGRFDTYPKRRGVTRIKELTAAGINVSFGEDDIQDPWNPLGDGN
MLDAVTMGVYIAHLMGYHQLQDAFNYVTYNGAKTLHISDNYGIEVGKPANCILLNAHDFYNALNKHVEVLYNIRHGKVLA
ETKPAETKVNIK
>SEQF1778_EEI65407.1 putative hydroxymethylpyrimidine transporter CytX [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEQKGTTIFSIPMKNRKTNTWDMFATWVGANANNGTWFVGGVLAACGFSVAMKVLVLSSALSYVFLSLVGYIGYKTGVS
TMTLSRASFGERGSYLPSLVNITQFIGWTAVNTFIAAQSVSILFHDLLGWPVWGQHGGYLGLVVGIIIMSILHIISVSSG
SRSVQMIERLGIILVLVFVIWESVAVFRTVSFSQIVNWHVPAQSKMAVGAAVDYVAAFNLAWVTAGADFTRFTAKEKNAT
LTPFLGALLGVVWFAFIGLISTISIAISSGVYNANNSDPSTIASKLGLGVVALLVIILTSMTANAVNLLAAGSALSNIFT
KLKLKYSLWIVVLLATVVTFIPMFVGSFLSAFESFLDYVGMVLGPTIAIICTDFYFRAHRQYDVDELGKVGGKYWYRGGV
NWVAIIVFAIGVAFFLGVHQLPIFVNTIGATFIDMCLSGILYYGIMLLVDRKEDELCY
>SEQF1778_EEI65408.1 toxin-antitoxin system, toxin component, MazF family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKRKVKRGDIYYADLSPVIGSEQGGVRPVLILQNDVGNHYSPTVIIAAITAQMQKKKMPTHVQLKGKSLPLTHDSVILL
EQLRTIDKQRLKDRIAHLSPETMAKVDKALTISVGLNAAYDENK
>SEQF1778_EEI65409.1 alanine racemase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVNGRLRDTSLIVDLDALRHNIQEQRKVLPENSRILAVVKANAYGNGLIPVAQTAMTSGASGLCVAILDEALELWDNGIE
AMTLVLGITPVEDALIAAQAGVSLTVGSLDWLEQYHQLAQVAKPKKPLKVHLGIDSGMGRIGFTEVATFKQAVKLLDSPE
FEFEGMFTHFATADSPDENYFNQQVQRWHQFVASLDELPPYVHMANSATGLWHREKITANTVRMGISMYGQNPSGRDLKL
TLDLQPVSSLVSSISFVKQLKAGRSVSYGATYTAEQDEWLATLPIGYADGYPRCMTGYKVLVDGQFCDIAGRVCMDQMMI
QLPKYYPVGTPVVLMGKSGDQEITATDLAEQAGTINYEILTNISNRVHRIYHQSK
>SEQF1778_EEI65410.1 holo-[acyl-carrier-protein] synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKGIGIDITEIERVKKAATAHSQFIQHVLTPTELEQYSQFSGQRSVEYLAGRWSLKESFAKAYGTGIGAKLGFHDIEII
DNQYGAPIVIKSPYNGNAHASVSHTAALVMTEVILESENK
>SEQF1778_EEI65411.1 hypothetical protein HMPREF0534_1280 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAQIIQRHPALQFILKTLFYFVVLLLLIYLYGYYGAGQEPFIYNEF
>SEQF1778_EEI65412.1 D-alanine--poly(phosphoribitol) ligase, subunit 1 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKNIITVFEQIAKDNSTRIAYDEMGKTTTYADLSSAVDTLAAWLSTQSLPDRSPILVYGDHQVEMIISFLAALKAGHTY
IPVSNDSAIPRMQSILDTAKPAMIIAVNDFPSNDLQFNAPIVDHQQLEKILATPQTFDTSAMINGDELAYVLFTSGTTGS
PKGVEVSHDNFMTFVDWMLSDEFKIKEHANFLGQPPYSFDLSNMYWLPALLNGGTIKALPHEVVENFGQMFTALPNLDLE
VFVGTPSFADMLMLSPAFNQQKMPSLKTFLFCGEELTVKTAKGLHQRFPDAKIFNTYGPTETTVAVSGIEITPEIIENND
RLPVGYAKPGVKLSIWNGDQEITTPGEQGEIVISGNSVARGYMNNPEKTAKSFFKIDGVPAYRTGDAGTLDSDGLLHHKG
RMDFQIKLHGYRIELDEVRASLEKSPLIKQAVAVPKYNKDGKVTHLIAYVIPNESTEDTAGLTKQIRESLDGLIMPYMMP
TQFVYRESFPMSANGKIAVKQMIAEANK
>SEQF1778_EEI65413.1 MBOAT family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDWISNLPNFSAYGTPVYFFYLLLAILPLGIGLYFGKRFSWYEALISFIFIFLMFDGSSWQQGISLIAYVIYQTIIVMA
YHRYRQNNNSSGVFYFTAALSILPIVIVKLSPAMVGHNSLLGFLGISYLTFRAVGTVIETRDGMIKEISPWKFIRFILFM
PTITSGPIDRYRRFEKDYKKVPTREEYLNLVNTGIFYLFLGFLYKFVIGYFFGQRFYPFFEKAALADPSFPSWNLVGVMY
TYGLYLFFDFAGYSLFAVAISYFMGVRTPMNFKQPFKSKNLKEFWNRWHISLSFWFRDYIFMRFVFLATKKRWFKNRNAL
SSTAYMLNMLLMGFWHGITWYYILYGFLQGLGLVVNDWWLRFKRKNLKQLPHNKFTTGVAIFVTFNFVMFTFLIFSGFLD
TYLFK
>SEQF1778_EEI65414.1 D-alanine--poly(phosphoribitol) ligase, subunit 2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQEQIINILADATGRDTADFSDASQNLFESGLLDSMATVSLLLGLQDAFGVQVPVSEFDHSQWDTIEKIEERVKELQNA
>SEQF1778_EEI65415.1 DltD C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHNGKKLWSILGPLIVACLLVVLLFSLPISKKHSAAIEHKAAVSLSPVVFKNQSIKQQALSDKHTHYVPFFGSSELRRMD
RFHPSVMAARYHNYTPFLFGSRGTQSLPQFFNINSMETQMRNNKAVYIISPQWFTKQGVQPPAFKYYNGELANLNWLQHA
NPKSPYDRYIATRLIAMLGKDGTVSSYAKKIAEGKSLSSFDMGVIRFRLNMLVHEDAIFSGFQLNNNYGKHILPNVKKLP
QHYNYNELYDDAMNEAARDTDNNRFGIKNSFYTQRVKKNLAKTKGSQRNFNYTKSPEYGDLEVVLNQFKNTNSNVLFIIP
PVNSKWEKYTGMDMNMYYQSVEKIKFQLRQQGFNHIFDLSHDGDKPGFMEDTIHIGWAGWVKVDKATNSFISNKQPQPHY
QINSKFLSPEWTNLTPTPGNLQKFQEKLH
>SEQF1778_EEI65416.1 glutaminase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPCVREVLTMKKLEQLIDKNFAETAHGKVANYIPILGIVDPQQLGIAIYDVDEDEIGTAGMAGTRFAIESIAKVVALILA
IKRLGHKRVLAELENGSADYSLSSVLLDDELTEQVHRINYLNNSSVLLTTALIDQLMGQNSFNALLGFCREICNDPCISL
NERLFRSAIMNDKDIHALAYYMKDKDILETVDQTLITYFMQSSMMVTSQSLANLGAVLANDGIKPWDNERLISHEDNELV
KKLLTTVGSFEESKEYTIKIELPIKSGTGGGLLACAPQKCGIGIFSPALDQHGNSLAGMSLLQDVVEQLVV
>SEQF1778_EEI65417.1 hypothetical protein HMPREF0534_1286, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGTTILSFEDRVVIETLRYESRSLKYIADYLGFSKTTIFNEVHRLTDEYHTVKAQADHEAKLSHRGRKTILTSNLKRLIE
EKIKIQKWSIEQVAHVVRT
>SEQF1778_EEI65418.1 SNF2 domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQYKPHEYQQYATRFILDHPVAAILLDMGLGKSVITLTAIKQLIQQGKVQRVLVVAPLR
>SEQF1778_EEI65419.1 VRR-NUC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFTNPNDSRDTLLHYLYIGIKIEKKSIEKSSKTTVTTVINPDESPIYQRLGRILQMLEKQIETAFVKATHQRGGLCLKFI
SPSMAGVPDRLVLLPDGHMGFVEMKAPGKRPRPLQVQRLSQLKQLGYQVFVCDQFGQIGGMLDAIQTA
>SEQF1778_EEI65420.1 hypothetical protein HMPREF0534_1259, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
SAELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKAKIAKRNDIKN
YAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYC
QGIGEYIRSTTDFYTALKNAGFQRQHKQNGRFIKGLRLKVEADEFLS
>SEQF1778_EEI65421.1 hypothetical protein HMPREF0534_1254, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
SAELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRNDIKN
YAQYLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNEKCELNPEYEQKSGDLYQKYREYC
QGIGEYIRSTTDFYTALKNAGFQRQHKQNGRFIEGLRLKVDADEFLS
>SEQF1778_EEI65422.1 VRR-NUC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFTNPNDSRDTLLHYLYIGIKIEKKSIEKSSKTTVTTVINPDESPIYQRLGRILQMLEKQIETTFVKATHQRGGLCLKFT
SPSMAGVPDRLVLLPDGHMGFVEMKAPGKHPRPLQVQRLNQLKQLGYQVFVCDQFDQIGGMLDAIQTA
>SEQF1778_EEI65423.1 SNF2 domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQYKPHEYQQYATQFILNHPVAAILLDMGLGKSVITLTAIKQLIQQGKVQRVLVVAPLR
>SEQF1778_EEI65424.1 hypothetical protein HMPREF0534_1251, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
NTVKKWDRIETYGAKLVENIVQATSRDLLAGAMRRLETAGNPVVMHIHDEAVIDAPTDRSLDTIVKIMTEVPDWADGLIL
NAAGFVGGFYKKD
>SEQF1778_EEI65425.1 hypothetical protein HMPREF0534_1252 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEATLAIAKLRTNKPNPNYRPLIFVVAPFTEVVKKDPVIVHKVQSYCRFVYQHGGIPICPQLYLPQFINLHHSQEFQVA
TFINIVLLTKCAEAWSFGKPTHDMCYFIRFAKRKNKNIRYFNNEMEAN
>SEQF1778_EEI65426.1 hypothetical protein HMPREF0534_1253, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAGNSGQASNTIYPHQQTITNAQELEQAAHYDHVCGQFTNNQRAIANFIKADCLIMDCDNDHSDDPTTWIKPANIANYFD
DVSYAITFSRNNMKAKHHKTPRPKFHVYFPITEITDAKTYAELKHEIQEYFPYFDDNALDAARFVFGVPSTKAIWHEGSQ
AVDKFMMAQRYFAQQNIGSIHEGKRNATLSHFAGRIIMRLGNTAEARQAFQEEAAKCDPPLSKQELKNIWHSATKFGQRM
ANQKDYIPPEKYNQPNDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQL
>SEQF1778_EEI65427.1 putative phage terminase, large subunit, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KRSDVFLRKLKDYKPTRFMAKDSTYSKDAADFAVSFIECLCHTKGTWAGKPFDLIDWQEKIIRDIFGILKPDGYRQFNTA
YVEIPKKQGKSELAAAVALLLCCADGEERAEVYGCAADRQQAAIVFDVAADMVRMNPALKKRCKILASQKRLIYEPTNSF
YQVLSADAYSKHGFNVSGVIFDELHTQPNRKLYDVMTKGSGDARTQPLYFLITTAGNDENSICYQVHQKAIDIMKGRKHD
PRFYPVIYGAGRDEDWSSPEVWKKANPSLGITVKMEKVKDAYNSAKENPAEENTFRQLRLNQWVKQDVRWMPMDKWDACA
FPVDPNELRGRDCYGGLDLSSTTDITAFVLVFPPRDDSEGYTLLPYFWIPEDNVDLRVRRDHVPYDIWKQQGYLQTTEGN
VVHYGFIEHFIDDLGKKYHIREIAFDRWGAVEMVQNLEGMGFTVVPFGQGFKDMTPPTKELMRLTLEKKIAHGGHPVLRW
MMDNIYIRTDPAGNIKPDKAKSTEKIDGVVATIMGLDRAIRNEDNGDSVYDGRGLLML
>SEQF1778_EEI65428.1 phage portal protein, HK97 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAGQNVTERTAMQNTAVYACVRVLAEGLAELPLHIYQYTSDGGKQRAINHPLYFLLHDAPNPEMTSFIFRETMMNHLLLW
GNAYAQIIRNGQGKITGLYPLMPDRMDVNRAANGEIYYTYTRNYDDYQAKNKSKQVILLSDEVLHIAGLGFDGLIGYSPI
AMAKNAIGLSMAAEQYGATFFKNDATPGGVLEHPNVVKDPERLRKSWQSQFSGSNNHSIAVLEEGMTFHQLSIPPDQAQF
LDTRKFQLDEIARIFRVPPHMVGDLDRSTFSNIEQQSLEFVKYTLNPWCIRWEQAMNQQLLSADDQRKFFVKFNVDGLLR
GDYESRMNGYAIGRQNGWLSANDIRELEDLNRIPADEGGDQYLVNGNMLPLNQAGNFYNTQTTKESEEPKE
>SEQF1778_EEI65429.1 endopeptidase Clp [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRFWNWKQNGDQRQLAISGVIAPDSWVHDDVSPQVFQDELNESQDPIDLWLNSPGGDCTAASQIYTMLMNYPNEVNVKI
SGIAASAASVIAMAGTTVSMAPAAMLMIHNPLTIVGGQERDLDHAAQMLAETKESIINAYELKTNLPREKISTMMDNETW
MNVNKAIELGFADAMLGDNKNVTDCYSYSDKQSDLVLLNKLKPKAKSTISVKSLQKRLSLLSH
>SEQF1778_EEI65430.1 phage major capsid protein, HK97 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKITELQEKRARIWKQAKYFLDTKQKEADVLSAEDNATYEKMEQDVVNLGKEIDRLHKQAQIEAELNQPTTKALTNTPT
AGELPKGQDAYAQNFWQMMRGHAVVDALKEGTDPDGGFLVPNEFENQLIQKLQEANVLRTISHVIQTNSGEHKIPVVASE
GTAAWLEEEAAYTESNTQFSQVSLSAHKLGTLIKVSEELLNDSAFDLMSYLSDEFGRRLGNAEEQAFLTGTGTGQPTGIL
TDTNGASAGSTAAKADTLTFDDLIELFYSLRAPYRQNAVFLMNDDTVKTIRKMKDNNGQYIWQPSVQAGQPDRILNCPVY
TSPFMPSMAASNKPVLFGDFNYYWIADRQGRTFKRLNELYAVTGQVGFLGSQRVDGKVILPEAIKTLAMAAK
>SEQF1778_EEI65431.1 putative phage DNA packaging protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAAITLAEAKAYLRVDNTVEDDLITKLIGSATATVENVLRQPLSAFDPLPDDIHTAILYTVAYLYEYRETADFDAMIKFL
RAILSPYRKEEF
>SEQF1778_EEI65432.1 putative phage head-tail adaptor [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQQQNKRVSKIADIGELDRRITLMKKKYVGENPNTGMSMYKDVRLGDVWAKVSALHGQEYYTAVTVKLEKQLSFIIRYRD
DVDEETNIWFEGRGYNIGFIDDVKYNHEYLEIKAEYSRGVDDPNEDN
>SEQF1778_EEI65433.1 toxin secretion/phage lysis holin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTTSLTVINSCFGAIGAFLGWFLGGLDGFLYVLLIFMVVDYITGVLCAINEHKLSSEIGFRGLTRKVLILLLVGIAHCL
DIYLLKNGSAIRTATIFFYISNEGISLLENTSRLGLPVPDKLKSVLQQLHDKDGDHQ
>SEQF1778_EEI65434.1 hypothetical protein HMPREF0534_1224 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISGIDVSEWQGHVDFNAVKASGVKFVLIRAGYGRSASQEDRYFAEHYT
>SEQF1778_EEI65435.1 hypothetical protein HMPREF0534_1225 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGAYWYSYAVSPADAANEARACLTVLGNRHFDFPIYFDL
>SEQF1778_EEI65436.1 Cpl-7 lysozyme C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEYGPCCNYNGNYGIWQHSSTGSVPGVNGNCDLDYAYIDYAAVINKKQPITRKNPDELAAEVLDGQWGNGTDRQQRLTA
AGYDYAVVQEKVNRLLNRKSVDQIAREVIRGSWGNGNERINRLKQAGYDPTQIQKRVNQLL
>SEQF1778_EEI65437.1 hypothetical protein HMPREF0534_1227 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKKVQTVTHQPLQSIKNNISSEQLLNDLHYQQSKQIIQVLLNKGLISTTEFKEIDDLNKQSFPPLLGPGSVDTSRF
>SEQF1778_EEI65438.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTITKIQGYQHDVKQLRVAAYCRVSTDNFEQLESLENQRAHYQKYINNHPNWELAKIYYDEGISGTKMTKRNALKELLT
DCHNHRIDLVVTKSISRLSRNTTDCLQIVRELQQLNIPIIFEKEHINTGAMASELFLSILSSIAQDESHSTAGNLRWAIR
KRFASGKFHVSSAPYGYSIEDGNLVINHTEAKTVRQIFQRFLSGTSASQIAKELNQKQVSTKRGGQWRSNTVINILRNGN
YTGDMLCQKTYRDDQYHRHFNQGELAQYLIEDHHPSLINHENFNRVQVLLKEAVKKRHIETGSHKYQQHYLFSGKIICGQ
CGTIFKRQTRPHKIYWACQQHLRSAQQCPTKAVSEASLKAAFCNMINKLVYSKKFLLQPLLEGLKEEANVNSDGQLISLT
KQIKANDHKAETLTELMHAGLLDKAIYVNQTARLEQDTYQCQEKIKQLNGQNTDSANDFEDVRTLLRWCHQGKQLTEFDE
GVFQEFVQQIVVNSSNKATFILKCGLKLPEKLNKNATIDGHFYRDIIKQRYNDPIKQAEYLYSIIESEGDLIG
>SEQF1778_EEI65439.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKVRIIPAHQQKGNSVQPQKNRLPFEQLRVAAYCRVSTDYDEQASSYETQVIHYKELIQKEPTWKFAGIYADDGISGTN
TKKREQFNQMIAACKAGKIDLIVTKSISRFARNTIDCLKYIRDLKAINVAIFFEKENINTMDAKGEVLITIMASLAQQES
ESLSQNVKMGIQYRYQQGKVFVNHNHFLGYTKDAQGNLVIEPAEAKVIKRIFYSYLNGMSMKQIADSLKADGILTGGKTK
NWRSSSVAKILKNEKYMGDALLQKTYTVDFLNKKRVKNEGIMPQYYVENDHPAIIPKSVFMQVQQLIKQRRNGITTKNGK
HRRLNGKYCFSQIVFCGKCGDIFQRNMWYRPEKVAVWRCASRVRRSKTGRRCMIRNVKEPLLKEATVEAFNQLIEGHELA
SKQIKANIMQVIKDSQGPTLDQLDKQLEEVQMKLIQAANQHQDCNALTQQIMDLRKQKEKVQSRETNQQVKLHSLEEINE
LVEFHKYGLVDFDEGLVRRLIEKITIYQRYMEFTFKDGEVIRINM
>SEQF1778_EEI65440.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIEATNLTKKYGSKLALNNVSIQIKRGQLIAYIGTNGAGKSTTINMLTGLLKPTSGIISRNQGMKIGIVFQNSILDKEL
SVKDNLYYRSKLYHEDHSEWLQKLIHIMGLTNFLNQRYGTLSGGQRRRVDIARALITKPDILFLDEPTTGLDLQTRLVIW
NLLQKMQSEYGLTIFLTTHYLEEAENADQMYILENGKILASGSATEIKKRYAPTKLVVTTNGNQLRTDYPSEQLTAQKLS
FDNLTFSEVIELLHHNQDYITNFSYSPGSINDAFVKITGKELQ
>SEQF1778_EEI65441.1 ABC-2 type transporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLSKLPERSFNKMFALIRRNLKIYFANKIGVLMSCLGALISFFIYIGFLQENLTSSYQSLPHAKEMLDLWMISGIVAIA
GITTSFQSLGQLVKDRESRTWDDLSLTDLTPFKINLSYLVSSIFISTLMQIITFFIMAIYFISVDNITIPDFAILPGLVF
IVLGSFGASTINLIIIDLIHSSTTFSRLSAIVGAAAGFMIATYMPYGTLSKSAQFIVKLFPSSYEAASLRSFLLNKLSKK
TLPAVGRQQMIEYLGIHFKIYGYQLSNYNNALMILGMSLILLGLAAVLTNLYQRKN
>SEQF1778_EEI65442.1 LytTr DNA-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQIHFQSDPSLDPDDLNITVNAVTKNNRVVNLLNYLDKYNQKSSMFIPIKTEDRILTIKQAELIKVEVTKNTLTFYTKSD
EIQANGRLYQVLERLNENFVQVSKHCIINLNHLVSLEAGFTGNMVAKLNFKQRADVSRKYLPEIERRLGL
>SEQF1778_EEI65443.1 hypothetical protein HMPREF0534_1233 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNFRKSIRYFIRGMGYGSITYLVIATFFTSNMIVSKTSVITVFIFSGLIGELSFLFQTELSYSVALVIHLIGTFILYSG
MMLINHWLFDWRTILIFVIVYIIIWLIIRLVEKQHINRINQQIMNRRK
>SEQF1778_EEI65444.1 hypothetical protein HMPREF0534_1234 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSYFDSRVDEGPVWQVVSIRVVEVRVKADMKAYTADTKID
>SEQF1778_EEI65445.1 hypothetical protein HMPREF0534_1235 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEDKFHKVDDGTTLWSEDGRYYYDNDCYLNVRLIRDGNYLRDKDNNKVYEIVEDQFIYLREDNFKHIEGRPYIWYKEK
>SEQF1778_EEI65446.1 type I site-specific deoxyribonuclease, HsdR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKGYLLESDVENLALDTLQKVGYDVYKSPSTTSPNPEIDKMRNNDHAVAVLTEKLQASLKKLNPGYPEEIYKEALRQLT
RLADNPDMMVNNHYFHKLLIEGIRVKTTVNGENRTEVLYPIDFDHVGNNQFVATNQFTFKGSHERRPDTTIFINGLPVVT
FEFKDASNPNVSIENAYRQLQTYKAEIPEYLKYNEILIASDGINSRAGSLTAGFDRFMRWRAPKNINVGDDLELETMIKY
MLTPKDLLNLIENFIIFETDGDNTIKILAAYHQYYMVNKAVKAAKRTMADPNDKRIGVVWHTTGSGKSLSMVFFASIVAR
KLNNPTMLVINDRNDLDDQLFDTFAAAHEFLRQAPEHAESRDELRKFMDKQAGEIIFSTIQKFSPDFESGETEMPVLTNR
SDVIVIADEAHRTQYGLKAKFTNNGLRYGFAKYLRDALPNASFIGFTGTPISTADKSTVAVFGNYIDVYDITQAVNDHAT
VKIYYESHVFPLKLKSDAQAKYQQLLKEANLDDDPNLEENTRRNREFSSLEALAGAQPRLESIAKHFVNHFEARQKETFG
KAMIVEMSRRNAVRLYNQIIKLRPEWDSDDLNKGKIKVVMTSSAADGPEMAKFQTSKADRRVLQKRMKDNNDELQIVIVV
DMWLTGFDVPSMNTMYIDKPMKGHNLIQAIARVNRVFKDKDSALIVDYIGIAENLKEALNVYSTEDQGQVGINMQKALAL
LKEKYDIITNDFLYGVDYSGFDSEDGAVRLKITRRVANEILGEDEETQQKFLDVVTELQKAYALTSTQPEAQAYGKEIAF
FKTVKVFIQKLKQPTTPVGSGKHTDVKYQMQQLLDQSIISEPNVDIYNELGIKRQSIDLISDEFLQKVNSMPEQDVAITL
LEKLLKGKIKAMMKSNKVTSEKFEDMLQKSIDEYNQRGITSEIVIRKLIDMAKKINAEQEKGKDLGLSQEEIAFYDALAD
HKKAVEVLGEKKLHLIAQELVKLVKEEAGVDWEKRRNIQAKMRVAVKHLLRKYGYPPDIAPEAVNTVVEQAELMATND
>SEQF1778_EEI65447.1 type I restriction modification DNA specificity domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKYRLGDVLTIIMDYRGKTPKKLGLDWTEDKNDIVALSAKNLKNGELINLDKSHYGNSALYNKWMKDGDISVGDILMTS
EAPLGELFLVDKPIKAILSQRIFLLRPNNSIVLPWYLYFYMSSKNFQNRLNGHATGTTVIGIKQKELRNIEIELPSLSIQ
KSIVRKLVPISKKIEINKEINANLLELITLIWSRYSQNISNKVPLKKIAKDIVTGKTPSTKIKANYGSDIPFVKIPDMHN
KVFIDETLQSLSLLGADSQKNKYLPANSIMVSCIGTPGLVSLTGSIAQTNQQINSLVLDEKFIYWVFLELRSLSNKIGNL
GSGGTTIKNLNKSDFSKLEVVVPDNDILLDKFNSIAKPIFESIHTNSFETNKLNQLKKRLLHKFF
>SEQF1778_EEI65448.1 phage integrase SAM-like domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSIIDEIVQEMLKVLDNSQLIQLKRVLKKKLGNNTDSGPKKSNESYITDYLAAKQVEGCSEKTINYYQATLKMMFSYLG
KHVQKITTEDLRDYLGNYQQSRNSSRVTIDNIRRIFSSFFSWLEDEDVIIKSPVRRIHKVKSSAKVKDTYSDEDLERLRD
HCNSERDVAMIDILASTGMRIGELVHLNQNDINFDERECVVLGKGNKQRIVYFDARSKIHLQNYLAKRKDANSALFVSLH
VPHQRMSINGIENRLKNLGKRAGIAKVYPHKFRRTLATNAIDKGMPIEQVQKLLGHERIDTTLHYAMVKQSNVKMAHRRF
IG
>SEQF1778_EEI65449.1 hypothetical protein HMPREF0534_1239 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQLKLSFNNLYLSLTDDKTFTLGELIFENISGDWGKAQSQGDFTNRVTIIRGADIDDLALGNSAKTPIRYIKNRALVNK
HLLPNDVLVEISGGSPTQSTGRSLLVSDSVIDKFSSEVLGTNFTRIFRPSSEENSILFKSYLDFLYDKDVFFNYENGTTG
IKNLDYKSVLKIQLPDIRKANNYQQYINLYKLYNNTVQSNGRQSVQLTKIRQAMLNNFF
>SEQF1778_EEI65450.1 type I restriction modification DNA specificity domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYRISDVASINESSISKSTYIGSVNYVDTSSVISGNFNGYRHYPSISEAPSRARRLVSKEDTVISTVRPNMKHVGFISS
KSDCIYSTGFAVVSPKKDKIDPYYLYLFLSSNRVTEVLQSIGETSTSTYPSVKPSDIGNLVIDMPPLDEQHLIANRIRLI
DEKKNQNSQINANLAA
>SEQF1778_EEI65451.1 putative type I restriction-modification system, M subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKMATKSKELSIEDKLWKTADALRGSMDASEYRNVVLGLIFLKYVSDSFETRHNELLKSDYPEDAEDPDMYLSENIFWVP
KEARWELIQQSAKTPQIGEIIDSAMDAIEKSNDSLRGVLSKNYASPDLDKARLGEVVDLISDISLGDKHAKQSDILGRVY
EYFLNEFASQEGKKGGEFYTPRSIVRTLVEMIEPYKGRIYDPCCGSGGMFVQSDKFVQEHQGKIGDLSVYGEESNPTTWK
LAKMNLAIRGIDNNLGPHQGDTFTNDLHKGERFDFILANPPFNVKNWNGDKLREDARWQYGVPPVGNANYAWIEHIISKL
APDGKAGFVLANGALSTSTTAEHDIRKAILEDDKIDAIVALPDKMFYSTGIPVSLWFVDMNKESENERDRKGETLFIDAR
DLGEMIDRTHRAFSKEDIKKVADTYHAYRGTNDQEYKDVPGFCKVAKLDEIAKNDYVLTPGRYVGLAKQEDDGEPYEVKM
ARLTGELKKQFEESNKLQAEIKDVLKELGYEI
>SEQF1778_EEI65452.1 hypothetical protein HMPREF0534_1242 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNENLSISYNKLWKLLIDRGMKKKDLQQVSGVSAASIAKLGRNGNVTTEVLLKVCKALECDISDIMEIVKES
>SEQF1778_EEI65453.1 helicase C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPNQGKKLGEYLYDYLKNDDYLHKLVGTLSKRYTYWLFHLDWKLTGKQKHDLLRFADLLAKSINKKGDSRQKNIALKIVA
TLSKMYPDDPEVALITNEVLTSFNNFLPRQGQSYTLVPTIEQLWNEAVVNYQKEKRQIPGEESKSFIGKQDIIFKSLSNE
LTSFSAPTSMGKTFLIEKYIELQVKEGVVGNFAITVPSKALITEVKVQLIKDLGAKLGEKQYRVISHPEEYRLDYEGSYI
CVMTPERLLALLIQYSEARLIHLFIDESQKVTEASSRSVFYYEIFDRVSAWKNRPKVTFASPLIPNPGIFKKLVQTAASN
DGLRIVESPVTQVKIIFDRSANKAEIYDDLNQNTIPIGTFKETPSVPDIIRKMMRVLGNSNCNLVYYGSKVNAISDAVVV
SRSMEESNDPRLIELADYISRKIHPKYILVKLVRKGIAFHTGELPVDVRIRIEEACRQGILKLIFCTSTLLEGVNLPADN
IFVTTLQNGKRTLSQLDFLNLIGRVGRLGHSMLGNVFLITGDTANSHSNRAAYLSRMNNRLKKAKLSVDAIKPKQAAAIK
KSLEKGDVRLDNIEKDKNYDLIRKLSLLYVKELRNHHHGVVRTHLAKHITYKEERKILQSLQERYADELEDDINFSSDQS
ESLRNKISQKNIKGYPNIHDGEKLRWPEAKAFLLKLSEIFNWAIYESDFVKSKQDKETQDKVIEDDAKIALLWMSGYSLQ
RICDFAIQIRDPERGDTRFLNRVSQYHENTPNIDWETITINLVMKRLQNLQFVLGKYFLKVTQELTKSGMPPQNDWYRFM
EYGTDSDLRIWLQQNGYSRESSEYIEDNKDEFIIQADNNYFVSKDILKANDLDAVSETKEIEINVPEIFI
>SEQF1778_EEI65454.1 hypothetical protein HMPREF0534_1244 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGINPPPSFYMKLRKTPKKLGSKMAKEASFTYLIDLVNPYLPDAEDTSVEETVRLIIKRASNNRFAPIPASSTLNTYASG
GISRTAAKKILKLTNKETSSLEEYFRKIGADQLTLIAKKLKKDEISPDVYRGKVPALLAKLFYDTFDRAANRKNKRKQKF
PTKSEDEDIFTKTVSDKTFANVFRQVNTSKMDAVKNRNAIHAFVLKPELLPFSYTNLKNLVTSNIANYAVARGVSKTAVV
GIQAASLLRRYAKSGIPNNLLGELLAYIFLEHEDNALKLYTRAEISKDKRTIDSEGMYLKRDQGKAQLILGASQLSNNLE
NAINNVVKKISNFNNNQSNEMVLATDIVDSSILQTQFGEDKSNAIIKLMAPTETDFEDIASYGIFIGYKFRTKLDLDDCT
QEEAKERCCQAINSDMKQAIGRLNRAIQQHHWQKSSFYVYLLPFTNAEEDSFAIMKDLIGD
>SEQF1778_EEI65455.1 sigma-70, region 4 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFNNSEYKLVGEQDDKLIVRVKHVDNQTIEVTKTQGNIIFDFDHQQYNSDHRNERHQDKFFKNDPTNPNMNMIDTLADR
GSIEVTSIYGKDNLLNQIIQKEEHQSRQMLAEQLPAALATLTDKQKYAVTQYYCHGMKKNQIAKEMGISKVMAGRHVKAA
IKKLRQFYDIEN
>SEQF1778_EEI65456.1 hypothetical protein HMPREF0534_1246 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGDKMMANKVSINVTKHPHQNGVVSMRNVTIRERLLRLLLGKPHHLMVIAPGKDVQQLQINEVKEASHECNE
>SEQF1778_EEI65457.1 hypothetical protein HMPREF0534_1247 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNDLDLQLKKREEFYQRMAEEAVEGLKTIQSVRQQLSGNNNDQAVDEQPKRNPVQDKITIRQLLANKCQEGYTEQVKELL
HKFGAEKLSDVDPKDYENLYYSAEGIGQ
>SEQF1778_EEI65458.1 hypothetical protein HMPREF0534_1248 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSPTHHALLSASSANRWLSAPPLPRLEQYFPHSTSEAAAEGTAAHALGEYKIHRLLGDQFKRPTSDYQSDEMESLTDDY
ASYVIEQYTQAKQYAADANISVEQKLDFSKYVPQGFGTGDCVIVSDHLLHIIDFKYGKGVRVEAKNNPQMKLYAIGALEM
FGSLYNIDEVEATIFQPRMANISTWTINAKELMHWANTELKEKAELAFAGQGTVRYGPWCQFSACNAVLRARYNYHHKLT
RFQLRSPSLLTDSEVAEVLEHIDDLNRWAHEVKDYAADLAINHGKRWPGYKIVEGRSIRRYKDEKAVAKIAETNGIHNIY
QQKLLPITKLEKQLGKKKFAELFSQEIVKPAGKPILVPNSDRRQSIGKSNPKDEFKEE
>SEQF1778_EEI65459.1 hypothetical protein HMPREF0534_1249 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLRRNNNMSQQAKVVTGINTRLSYANVWEPKSINGGKEKYSVSLIIPKSDKKTITAIEKAIDAAIQEGIGKFGGKKPNK
ATLKLPLRDGDVERDDEAYQNSYFINANSITAPQIVDKHVQPILDRTEVYSGCYARVSINFYAFNTNGNRGIACGLGNIQ
KIRDGEPLGGHASASDDFTAIDDNSDDDFLS
>SEQF1778_EEI65460.1 DNA-dependent DNA polymerase, family A, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQLSIDIETYSSTNLNQTGGYRYADSDDFELLLFGYAVDFGPVKVVDLTQGEKIPSQIIQALDDPAIIKSAFNAQFERV
CLSRFVGHRLKPAGWHCSRVWSATLGLPLSLRDVGTVLGLPRQKITAGKELVRYFCTSCKPTKANQNRTRNFPYHAPDKW
QQFKQYNQRDVEVEMEITQKFSRFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQKEFHAQYLQTSQQLTGLANPN
SPLQLKNWLHQQGVETDSLAKASVAQLLQTTTGTVHQVLALRQLLSKSSVKKYQAMQKAMCKDGCVHGLLQFYGANRTGR
WAGRLVQVQNLPRNSMPDLEEARALVKQGNTTALAMLYESVPDVLSQLIRTAFIPSKGHHFYVADFSAVEARVIAWLSGE
EWRQAAFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG
>SEQF1778_EEI65461.1 hypothetical protein HMPREF0534_1210, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
TLIWYGLTWSLELYQQTNARLWRQGQRQPVVIHHIITEGTIDENILAALKRKDKTQLALINAVKANLKGSVMA
>SEQF1778_EEI65462.1 hypothetical protein HMPREF0534_1211 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIMWNYLDKRRATVAALKDYDGMKFIIDSYQDDLKLAKEQMIGVSSPRYGFVPGSSKKDNPTEHRLLHGIDETTKLNER
YQQAQLYFKWFEPAWQELSEDERFVLDVCYRTPNQSMNEGLTIVMDKYFIAKTTAYNRKNKALDHLTLLLYGSHH
>SEQF1778_EEI65463.1 HNH endonuclease domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPYSPKKPCRYPGCPRLTHNTYCDVHAKQVSSHYNRYQRPKRSRPRYHRGWPKIRQRYLLHHPFCEMCLSQGRYTQATEV
HHVLPLEHGGTNEFKNLMALCKPCHSRITAQMDDRWHKKPRRYHY
>SEQF1778_EEI65464.1 hypothetical protein HMPREF0534_1213 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKDGTNRGGARVGAGRKSKSLHDKLEAGQEATVIDLPEPANLEGHVMPPVKKYLKAKQKNGLEFDAADIFKETWEWLVE
RGCEKLVNTQLIEQYAVSVSRWIQCEECISKFGFLARHPTTGNAIASPYVSMSRDYMKQSSQLWFQIFQVVKENNATTYQ
GSTPQDDVMERLLRSRKGMN
>SEQF1778_EEI65465.1 DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFVKKKITDLIPADYNPRKDLKPGDPDYEKLKRSMHEFGYVDPIIWNQQTGHVVGGHQRLKILQDEGIQEAECVVVSLD
DEKEKTLNIALNKISGDWDKDKLALLMTDLQASDLDVSLTGFDENEISDLLGTADDTHDDDFDVDSELNKPTFSKAGDLW
HLGKHTLLCGDATKKESFHKLLSDNKVNLVLTDPPYNVDYQSKAGKIKNDHQDNDKFYKFLLAAFQNMNTAMANDASIYV
FHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLVLGRSPYQWQHEPVLYGWKHDGKHEWYTGRKESTIWEFDRPKQSKEHP
TMKPIPLLAYPIMNSTMSNCTVLDPFGGSGSTLIACEQTNRICYMMELDPKYCDVIVNRYIKQVDSDQDISVERDGHIIP
YSNLKKPA
>SEQF1778_EEI65466.1 hypothetical protein HMPREF0534_1215 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEINFNVHGQQRKKLVEQIANYTQQKAEYQYTPTYAYQIGKYTVSKDGNLSSPDEIPSNLTDKLKELGFRPANIIKLHLA
YRRDDFTDQALENLRHLIWAKGQLIKDACQLDSLKLDVDDQQVTFNWFNKVKLDDATAYQQFIDKLVQYAKDHQRIVSEP
HEESNEKYAFRCFLLRLGFIGPEYKTQRKVLLRNLAGSAAFKNQEA
>SEQF1778_EEI65467.1 hypothetical protein HMPREF0534_1216 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSRIKDELARRDRIRQQVLQIRNTGEVNMFDIENVKRLAYYYNCHDLIDYLTTERAGYVNLILTGKFN
>SEQF1778_EEI65468.1 putative membrane protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKSSSQVMKGIIWAAVASAMWGISGTVLQLISQNLAIPATWMLSMRTFSAGVILLVISVFLYGKKIFNVFKTRATAISV
ISYAILGLMANLLTFYYAIQTGNASAATILQYLSPLFIVLGGIIFMHRRPFRSDIIAFVVALIGVALCITRGNLTQLALP
FVSLLWGLGSGITAAFYVVLPQRAADENPPIVVLGWGTMIAGVLFNLYRPFWVNPPHITTTLVASVATVVLFGTILPFGI
LLHATRYAPSDVVSIMDAVQPITTSILSVIFFKLNLNWAEILGIILVIIAVYILQNGRRKRTIHY
>SEQF1778_EEI65469.1 DnaD domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPDASLLQHYLQAGETNISNLLLHHYKELGMTTSQFVLYLQFKSYQDRGIMNPDVRTIAKNLGTKERQVFEQLHQMMTNH
LVEQKMRKMEDGKEDAIYDFSLLINKLALLNENDQEETIKVENTNSRVETFNQLEAEFGRPLSSMELQIVNDWLDKDNYS
AIMIKLALRQAVMNSALNLQYMDRILQSWDRQGLRTERDINEHEKRFEQRKEAGQKPEKKTLKKPKIPIYKLGE
>SEQF1778_EEI65470.1 hypothetical protein HMPREF0534_1202 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQSRREVQREQSRGSSMRTIRNLLIAILLILLIVWSVFAVSNQPRNSARRQTISLAEKYAHLQSPDQFYIYNRENTYYTI
SGKNQQNQPILVMVPQHGGKIRVLKQSSGITAARARAMTKSNRDPREILKVAPGIFNDKIVWEVTYRNQKGNLCYDLINF
KTGQYVQNINNL
>SEQF1778_EEI65471.1 putative DnaQ family exonuclease/DinG family helicase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTQRSSQRTKKRDKKAPIYSVVDLETTGTNVNHGDRIIQIGCVLVQDGEIMNHFETKINPREKIPRSIVQLTGIEDKDVR
KAPLFEDIAGTIYSLLAETTFVAHNVNFDFPFLNAELERAGYPSLSIPAIDTVTLSQILLPTAKSFRLRDLTSSLHIEHD
HPHSAVSDAEATADLLNDLLKRVQELPTLTLEKITQLKLNLPQQTAGVFDAELQRRRKSPQPLSEELYVSHGIVLHKSRP
ITATGQREKHKYPSTKKAKEKLYGDTLRLRPVQAKMMNSIYNNYTHAEPQNMIVEAGTGVGKTLGYLFPLSYVAYLDKKI
VVSTATNILQQQIIDTSIAQLNKVLPFKMNSVIIKGNAHYIDIARFVHSLSVIEDSKLVQLLKAKILVWLLSTQSGDLDE
LNLNSQQSPYFTEIRHQGIRSLNPANAFYHDDFLVRREKRLHQADIIITNHAYLVAHAQELGDGTRRPYLVIDEAQHLSE
SILKRSRRTFNFQKLRTAVHIMSGLVNNGNDRNLTDIFAEQALGSYNVELLRGDLNAVEEAVDLFQQALYRQYMASATGN
PDNELIEQPLQNDQVMALLDISGPVMMKLEQALSSVQLHFSALSHLFSSQPDRWLLSDRYLMSQFQSQLAKLIEADQTLN
EFNETLQQQGEAAAFWITIRQSSEQSALQLSGGLLEATHYLTKNVYPYFAQPLFVGATLFTSPRSPYLYHQLDLERNNTL
TRRFASPYNYKQNAKLLIAEDAPVPSAQNNSDYIKYLSDTIYQLTKNADYQTMILFNSLVMIEQVYSQLRETDLFDQRDI
LAQGITGNRDKILKQFSGGKNSILLGASSFWEGIDLPESALELLIITRLPFDSPDEIMNRAYNKLLQQQGKNPFYHSELP
KATMRLRQGIGRLLRTEDDHGVAVVLDPRLQTRRYGKTILSSLPTDLPVNSKKTADLISITQKFLRNGKEDKVN
>SEQF1778_EEI65472.1 mevalonate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVKQQGIGTSHAKIILMGEHSVVYGQPAIALPLPSVQLSVTLSSRQDNQRIIKSRYYHGSLGNLPSSMIGIKKLIDTLSA
RFNDHETGWDLKIESQLPAERGMGSSAASAIAIIRAFFDYYDEPLDRTLLLQLADVEEQITHRSPSGLDAATVSSDKPLF
YVKGRIGVPIEMNLDASLVIADTGKKGATKEAILAVKDELKNNNEKAEGHIKHLGELVNQTKDYLTQNDIVKLGDALNFA
QTDLAALNVSDPSLDHLIHVARDNGALGAKLTGGGRGGCMIALMQTAMGARRLASILKENGAHDIWLQPLDKRGNN
>SEQF1778_EEI65473.1 diphosphomevalonate decarboxylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATAKAHTNIALVKYWGKKDQELIIPQTDSLSLTLNEFYTTTTVNFDNHLTSDLVAIDQQTLSKKEAKKVVHVLDIVRQL
SGIKAFARVESINHVPTAAGLASSASAFAALAGAASTAAGLNLSSRDLSRLARRGSGSATRSIYGGLVEWQKGTDDASSF
AQPVLENVDFPIEMLAVLVDTKRKKVSSRSGMQSSVETSPYYDAWRQVVANDMVAIKKAIKAKDIDQIGHIAEENALRMH
ALTFSADPGFTYFNGETLTIIKAVEDLRNQGINCYYTMDAGPNVKVIYDRENRSKIVEKLSNIVGPERLVVSQPGPGIKI
WNE
>SEQF1778_EEI65474.1 phosphomevalonate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITEKAPGKLYIAGEYAVVENGYPAVLVALDQFVTCTIEESTQEVGQIISRQYNNDQLSWRRLGDQMVVDKRDNPFSYIL
SAIRVTEEYARTFSRDLRIFNIHIDSQLDSANGRKYGLGSSAAVTVATVKALCRFYNLPVNKDQIFKLAAIAHFEVQGNG
SLGDVAASVYGGWISYHSFDRQWLAQQRKYLDLKTIIDLPWPDLNIESLTAPKNLELLIGWTGKPASTSQLVDKISLFKA
RRQTEYHHFLEKSKSCIQRMVDGFHRQDLEAIKNEIRYNRDLLKQLGTNSGVNIETESLSKLCQIAESFGGAAKTSGAGG
GDCGIVAIDSNSNFGNVLKSWAKNRIEQLPLSVHFIDNAKSFKKSVKHHLSYIHK
>SEQF1778_EEI65475.1 isopentenyl-diphosphate delta-isomerase, type 2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMESRHAQRKNEHLSLAAKYYDQVHQHHYFDQVRLIHDSLPEMTTDDVDLHVQLADNLEIECPFYIEAMTGGSDQALKVN
QQLAQLAHKHHLAMATGSLSIISKDPQSFSSFEIIREENPNGIIFANLSANASLDQAINAISLLKANALELHINAAQELI
MPEGDRDFNWLDNIQYLVSELEVPVIVKEVGFGMSKTTIAKLQTHDVHLINVSGRGGTNFAAIENRRNHDINFESLLDWG
QTTPESLLEAHSIRRGKTEIIASGGITSPLDVIKAGVLGARAVGVAGYFLNILQNEGYEALDQTLGEWQVIVKRLLALLG
CSSFTELSRVEYVLGTDLLSYARQRHLR
>SEQF1778_EEI65476.1 hypothetical protein HMPREF0534_1208 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVIEVNKINWGKSITVGITAGLVAGLVKLGWENILPPRTPERDQTNPPQKMLEQFGVPTQITHATYTYSGQQLPWVSYVV
HFSFSAGFGVLYSIGGQLAPWIKKGDGIPFGIAVWDFFHLKLMPLMGTVPAAKDQPLEEHVSEFLGHAIWMWTIDALIKS
KK
>SEQF1778_EEI65477.1 hypothetical protein HMPREF0534_1209, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYQNYTIGQTEFVLNYNYDLPQNHIARLISDFVDSIPQ
>SEQF1778_EEI65478.1 hypothetical protein HMPREF0534_1186, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGTTILSFEDRVVIETLRYENRSLKYIADYLGFSKTTIFNEVHRLTGEYHAVKAQADHEAKLSHRGRKTILTTNLKRLIE
EKKIKIQKWSIEQVAHVVRI
>SEQF1778_EEI65479.1 fibronectin-binding protein A domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSFDGLFTHAIVHELDQKLTTGRVAKVSQPYPAELIIMIRAHRHNYPLLISANPTYPRIQITEIPYKNPAVPTNFTMMMR
KYLEGAIVNKIEQVDNDRIIKITFDTRDELGDSQQLVLVSEIMARHSNISLVNLKTGKIIDTIKHVGSDQNRVRLLLPGA
TFVMPPKQDKVNPYLPNQIYSDLVRQTDDTVELSHQLQKHYQGFGKDSARELAAELLQSDNLPATYQHFLKHFENPEPVL
ITHSNGKSQFAVFPPLNIDGELQHFDSLSALLDAFYANKAEQDRSKELAGQVLKVLKNELKKDRRKVKKLQQQLQDAATA
DQYRICGEILTTYLSKLTPGMKEIELPNFYDDNKPLKIKLAPELSPSRNAQKYFTKYNKLKTSVEYVKEQLKLTNDEIKY
FENIENQIKLAAPADIQEIKLELQEQGYIKKKKSGKKQRKVKVSAPEEFHTSDGTTVLVGKNNLQNDRLSFKIANKNEIW
LHVKDIPGSHVVIRSTNPSEDTILEAAQLAAYFSKGRDSDNVPVDYLPVKRLHKPNGAKPGFVIFTGQKTLYVTPHKLSN
>SEQF1778_EEI65480.1 carbamoyl-phosphate synthetase, large subunit, oligomerization domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMEKLKSVLIIGAGANDVQHGDELDSAIYQVSRVFKQMKIKTILADDNPFSVSLENVDHGCIVPLKVESLMDIINKFHPD
AILPTLGNRRAFELTQELLEKGIIRKENIQLLGVPEATIRQINSAVLLERTLRQMEAPVKKIVTVNNYQDALDEATKLGY
PVIIRSVLPKSNSTRKIVHDRSELADAVKACLSQSRAEQVVVQQSLAGYKEIEVVVQRDSSGTMMLLSMIEDMDPIGIHA
GDSIAFNPVQTLRDRQIQDIRDTAFAITRKLRIVGTNHIQFALDTNSDRFYVIKSSPYFDRITAFVSQSTGYPIAQVTAQ
LYAGKHLRDIDLGENYVHHAALIEPTMDHIAARVPIWGFNDLPKASRLLGTEKRSVGTVFGIGRSTIEALFKAIESRYHE
PADFHLAAQKQLTDDQLIAKIVHPEAGRLFVLIEAMQRGYSVNELAEMTKIDPFYFEQINKMRLLIREIAEHPNKEPVLQ
KAKSYGLSNQLIARLWKTTSEQVYQMSLDHQLLTKYKEIEPSAGEFDQHTNSFYSAYEEENEISRTSQPSALVIGTGGLR
LGLSNSGDYFVAMMLKELHNEGFNNVIVNSNPSSVTFNPELAEKRYVEPVTIENILQILRIEQPQYLFIPASYSKLLKSL
QNYDLDVKIIVIPDELPTTAASSDRQRYSFNYVYDGNYAYPLGTMTDLFSPIALNYQSTALRYPADLPSSTYQNLNDQAS
VAVLKLEQPGLYQVIFEENDGEFNLIKVQPLSLPEVAFLSKALHISLPGIFTQLFTGKFDKMLEPKPVSGIVNYRATFPF
KALRVKGGIPARNRVIGAQMQFLGE
>SEQF1778_EEI65481.1 carbamoyl-phosphate synthase, small subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTARYLIFEDGSIFAGEGFGSPAVTFGEVVFNTSMTGYQEIITNQVYNNQIVVFTQPNIGSYGIQRNIYESIVPTIKGII
VRSLADAGTDDNGRQLTLDKYLQQMNIPGIANIDTRAVVHKLRKAEKPLKGSIVPVPDDHAFDQLHATVLTNQQVAQVST
PKPYPNPGTGLSVVVIDFGLKNGILRELSRRKCNITVLPYTATAEEILRLDPDGVVLSSGPGNPNNVRRSVLEMIRTVQT
KVPMFAIGLGHELFGIANGANVQQIPVEHHGMNHPIHEIITDHIVYATQAEGYLIDRNSVDRSQLFITYVDMLDNSVQGL
RHRRYPAFSVQFFPDGAPGPDETDGLFDEFVDTMNRRGDRH
>SEQF1778_EEI65482.1 pseudouridine synthase, RluA family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPEELELTIDGEMVGRIDKQLGHHFDQFSRSQIQHWIEDGHVLVNGEQVKPKYKLLVGDHVQIIPEEPQKIDLTPEDIPL
DIVYEDDDVIVVNKPQGMVVHPAPGHPNHTLVNALLYHSPLSTINGEFRPGIVHRIDKDTSGLLMVAKNDMAHRSLTAQL
KAKTNKREYVALVHGVIKEDKGTIDAPLGRSLKDRKKQAVVVDGRHAITHFNVLERFKNYTLVACQLETGRTHQIRVHMK
YIGHPLAGDPLYGPRKTLAGNGQYLHARLLGFKHPRTGKEMVFTAPLPAYFTKMLEHLRKTDQ
>SEQF1778_EEI65483.1 signal peptidase II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLGIAIVIILILTICDQLLKSWVASSIVLGGSKQLIPGIIELTNLRNSGAAWSIFEGQQTFFTIITIIAIIVIGYFIWQ
YRKNIPMLIGLSLIMAGTIGNFIDRLRQGYVVDMFETTFINFPIFNIADMCLTIGVIWLIICILKEKD
>SEQF1778_EEI65484.1 hypothetical protein HMPREF0534_1192 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTFIIMEEETRYFYQPDLTGTIISWCWTFLFFIAGLVIWLEITHFQWLSALFFAVFVILALLEWRRRTVVITPTKMVFNR
LLQKQYLVIPISDIRQPEFTKHTVTITVNGEVMSFTFTTKAIARLKLALKQQGVQ
>SEQF1778_EEI65485.1 putative cell wall enzyme EbsB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKIFTDAATKGNPGPTGLGIIIIANHKQIQLAIPVDKESMDNHHGEFAAAHFGFKYLIDHFSNNETILFYTDSRILSDA
IGKNYTKHYQKELAALNPLLQHFPTVVTQWIPESQNRGAHNLANQALHKIE
>SEQF1778_EEI65486.1 hypothetical protein HMPREF0534_1194 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQTYQLIATAAAGIEALVGKELRDLGYEVKVENGRVRFQGTMKDVIRTNLWLRTADRVKIVVGEFDARSFEELFDRTENI
AWEDLLPIDANFPVEGKSHNSQLHNVPSVQAITKKAIVQRLSNAYHRRTRLAETGATYPLEVAINKDHVLLTLDTSGEGL
FKRGYRKNKGGAPLKENMAAALVMLAYWFPDNPFVDPVCGSGTIPIEAALYGHNIAPGINRSFISEQWVNLVPDGLSDEV
RDEADSLANYDIELDIHGYDIDQNMIDIAQENSRAAGLTHDITFKQLAVKDWQTSEVNGVIVANPPYGERLSDKESVHEL
YRQMGELYRPLTTWSKYILTADMEFEKYYGAPATKRRKLYNGALRTDLYQYWGKKDRSKIKSLK
>SEQF1778_EEI65487.1 putative nrdI protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNKRIKIVYMSFSGNVRSFTHRLQEYATQQHHLNNENPLVDLLEISEETLPTESDSKFFVLLPTYMIGGSRFTPTLTEI
LTTPMHDYLESYDNVKCCAGIIGSGNLTLGKMYVITAKTYAKKYGLPLLDAFESRGTTWDIERVYKILTDKVNENSLM
>SEQF1778_EEI65488.1 DivIVA domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFKLDNIKFTPQDILHKQFKERNIGKGYDEADVDAFLDDVIKDYDTYNKELERLNDENERLRAKVDELNRQVEVGSSMSS
QTTSRQPVSSATNMDILKRLSNLERRVFGSQLDGNDNNDSHLL
>SEQF1778_EEI65489.1 hypothetical protein HMPREF0534_1197 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRLWITGYRSYELNIFKDDDPKVQVIKEVLKKYLRAQLELNDDEFWVITGPQMGTERWGLEAALEFQADFPQLKTALMF
PFAEFGKQWNESNQLKLTNITQQVDFFANVSDKPYQSPQQLRNYQQFMLTHTDEAFLLYDPEYEGKTKYDYETIQKYIEE
SEYSMTLVDFDELQEEAEEWAERQREKDEF
>SEQF1778_EEI65490.1 recombination protein U [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITVTIHYPNGQQPVQHYNTHNELPTPHQSIYAKRGMSLEDEINHSNHYYLARHIAVIHKKPTPIQLVKVDYPKRSAAVI
KEAYFRRPSTTDYNGVYRGYYIDFDAKETRNKNSFPLKNFHPHQIQHMRECVAQGGICFAFIKFTELDLLYLLPASNLFK
YWDQQQNGGRKSILRTDIAKEGYQIHYQLNPRLPYLNAVDKIIAAKA
>SEQF1778_EEI65491.1 penicillin-binding protein, 1A family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNDNQSTRSERHNNNDNQQRNVGGLIKKILLWVAGIVVLLMVASAALFFYYASSAPKISRSDLTSQSITTIYDDQNRVI
SRLGAQKREYAKDNQIPKQLKNAVVSIEDRRFYKHHGVDTIRILGAATSNVFGRSAGMQGGSTLTQQLVKLSVFSTAASD
RTLKRKAQEAWLAINVEQHFSKSQILDFYINKVYMGNGIYGMQTAAQYYYGKDLNDLDLSQLALLAGMPQSPTYYNPLVS
NTKYATQRRNEVLNAMVRSNYITQSQANQAASESVTAGLDPDHGNISGSGTAVDSKVVDPYVKQVLADLQAQGYDPYSDG
LKVHTNLDLDAQQHLYDAANKNVQFQNDKMQAGVAVTDPHNGQIIAMLGGRHTGNVVYGLNRAVQSNRSSGSTAKPLMVF
GPAIEYLQWPTFKSIADTRFVFPGTNTVLHDFDKKYKGNMTMREALVQSRNVPAIRALQAVGIKRATSFLDGLGISQKLP
YTLQNGIALYISPLQVSAAYAAFANGGTYYKPYYISSITTQDGSVKQFNPKGKRAMNKATAYMITDMLKGVFTDSQGSAT
DARLDGVNQAGKTGTTNYPGNSSQSGVMDSWMAGYTKNYSIAVWTGYDHPLEPGGSISEQYVKSAQLLYKDLMQYLDSQN
HASDWTMPDTVEAVRVKGKRQLVIRDSKWAFDYTEDTSDDRDSSSTSSSSDSSSSSSSSSSASSSSSESRTEERNNAPAE
SSSSSAPASSSSSAPAQSSSSSPASATQPSTTNP
>SEQF1778_EEI65492.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRREGNTMQIKQAKMDDLNQIMEILRDGRNQLAEQGIDQWQGDYPNEEHIKEDIEKGFAYLVQSQDDETVGALSIVEAPD
HSYDELDGDWLIDTDHYVVIHRVAIHSNHAGKGYASALFTSVIDYIKNNRKDIKTIRIDTHEDNKIMQHLIDKNGFTKVG
ELHGVYRPEENSYVYALLTGN
>SEQF1778_EEI65493.1 hypothetical protein HMPREF0534_1181 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKFIKFTLTIFTAFFLIFIYGLAANPVHADLSNKYIHSTTPTLFFHGYGSGAHAEEYMVNGFVKAGVSKTVITADVAGD
GTVTLKGDIPHNAVNPLVMVNFNDNHSTNYELQGQWVKNVLEELQAKYHFKKVNIEAHSMGNMAVMYFLLANAGNHNFPQ
IQKQVAMAGAFDGAIGWNEPANLIVNKKTGKPSAMNDSYQKLLPLRHRYPRQIKLLNIYGDLKDGNDSQVSNASCLSLKY
LINNRARSYREVKITGLNAKHELLHHNPQVNKILISFFWGK
>SEQF1778_EEI65494.1 glycosyltransferase, family 8 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLLFSINDKFVTQLATVLLSIKLNTHAQEFNVYVLQKEKLKRTEDLERVCKQLGMNYFPIKVNDQLFSKAPVTDRYPTT
IYYRLLAHRLLPQDLHKILYLDADVLCINDLSSLYETSLEGYLYASAIHTNLTNTTEVINKIRLQNFDADGYYNSGVLLM
NLDTIRKKVKDTDIFNYIRTHTLLLPDQDVLNALYGRYIKSFPDQLYNFDTRKGGIYETISFGEWTTDWVMRNTVILHYC
GRDKPWLPTKNSGRYTALYKNYFQMTNKLISATLLLSPEETD
>SEQF1778_EEI65495.1 HD domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTWIAIQYLIIKEPIKNRGFMMKQAEQLTAIKEYTIQKLGQDKTGHGMDHINRVVKMSKRLAIGEKVDPFLPIVAAYLHD
TIDEKLVDNVKAAKQELVDYLKQIDFSDEQVEIIMNVINNISFAHTLDKEEVKLSLIGQIVRDADWLDAIGAIGITRAIY
YGGGHHEKIYDPAIKPRHNMSREEYRNLANETIINHFDEKLLHLKDMMNTETAKKIANHRQQVMLDFLDEFHAEWDAKM
>SEQF1778_EEI65496.1 hypothetical protein HMPREF0534_1184 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDARYSKEAFSMKKQTLIKTLLAITAGILMILISFTGFQTILPTSKAFMPLAGVIAVGIAVALGINIAFIVTLVSAIIMI
VLGTADWVILVDFIVILIVVGLILRRQVPLSIDLNHSQLLWLAIFTGLVQLFFISIFYGLIGLVLTGTPTGGLTFVQLII
PNALLTGLLYGFLVAPISLIFRWVARKALHIDNNHNNDSGNSAGDKQGGSIIVDLRSAKNKKDDK
>SEQF1778_EEI65497.1 EDD domain protein, DegV family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIAVVTDSTAYLSPEEAAANNIHVVPIPVTLDGQTYREGVDISTSDFYEKMANSNSFPTTSQTPIGQLMEVYQGLADDG
YDAVISIHLTRAITGYLDTVEQLAEQMKDTIKIVPIDSHLTVKMMGYLALEAAKLASEGDDLDDIVKKVKEYRDTFNNVF
VVDDLQNLVRGGRLSNASAFVGSILKIKPLLTMHTPTHAIEAFEKVRSMKKAKLRCEQIFDEDIAKLDYPVRAMVVHANA
PEEGQKWLDKLQADHPDISFELSYFGPVIGSHLGQGALALAWMQDTAKKPLA
>SEQF1778_EEI65498.1 transcriptional regulator, LysR family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
EGYHMDTRVLKYFLTVAQTNNITKAAEQLHITQPTLSRQIMDLETELDIKLFNRENRRLQLTKAGILFQQRATTMLQLLD
QTENDLHQQEEALTGEINLGSAVSSVSPYITKIIFEFQKLYPNVIFNLSDGDGDVLRRQLDEGLNDLVCLLEPVEAAKYN
FLELPVREEWGVMMKKSAPLAKYSTITKEDLYKIPLILPHRSIVRDEVSDILKLDQTRLNIRATTSLPGNTVSLLRNSNY
YGLTIKGVYNNFHDPNLVFVPLVPNKSTGDVLAWRKNTILSPAIEKFLQFVNEQIQES
>SEQF1778_EEI65499.1 oxidoreductase, aldo/keto reductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTSKFKNPRVFNAITDLERRIKMNQDLQPKIKLNNGHLISQLGLGVWKASLAETQQMVKEAIMNDYVLIDTAKQYGNEA
AVGQGIQDGLIATGRKRNSIFLTTKIFNGDQGDYDKLRQAVKAQLKRLQTDYVDLLLLHWPVNDKYNESWRALEDIYADG
QAKSIGVCNFNVERMTDLLDHAKIKPAINQIEFNPLIHQPKIVKFCRENDIQLEAWSPLGNGRLLSNDVIKQIADEHQKS
PAQVILRWEIQQDFVVLTKTTHPQRMQENTEIFDFTLSPDEMKQIDKLDQEKHSIWYDKFKWSGNPDGVDDYIGKPGAF
>SEQF1778_EEI65500.1 hypothetical protein HMPREF0534_1176 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMMSVMIPESIDSYQLTNEFTELGKKIGVEINLRNAKIYDTMHNL
>SEQF1778_EEI65501.1 hypothetical protein HMPREF0534_1177 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSQQIYETSHMISNENLDVRTITMGISLLDCIDSDSTVACQKIYDKITTNAKGLVKAGQQIEAEYGIPIVNKRVTVTPI
SLIAAASHDHDYVKYAKTLDKAAKALGIDFIGGYSALVQKGYQTGDRTLIASLPEALAETDFVCATASMLVQLVAESTWM
PLHKWVK
>SEQF1778_EEI65502.1 hypothetical protein HMPREF0534_1178 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGEVVVAGSKLDMMTNAKLVIFCNAIEDNPFMAGGFHGVDEPDVVINVGVSGPGVIKTALEKVKGESIDVVAETIKKTAF
KVTRMGQLVGTVAAERLGIQFGIVDLSLAPTAAAGNSVAEVLEEIGVAQVGTHGTTAALAMLNNAVKREKRRHYGLQSCW
WFIRRIYPRL
>SEQF1778_EEI65503.1 hypothetical protein HMPREF0534_1179, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKAVNAGTLNISKLEAMTAVCSVGLDMIAIPGDTPKETISAMIADEAAIRMINNKTTAVRVIPAPGKKVGDTVEFSGLL
GYAPVMAVNKAASTAMINRGGLIPAPIHSF
>SEQF1778_EEI65504.1 hypothetical protein HMPREF0534_1140 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYVLKDLCNTIDEVYVKSILKGVFIMKHTLKVDQVRDGLWLDSDITYAKFG
>SEQF1778_EEI65505.1 hypothetical protein HMPREF0534_1141 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPNLVDFARHGYIVVGVEYRDSNKVQFPGQLEDAKAAIRYIRANAKRFQADPNRFIAMGESAGGHMASMLGVTNGLNQFD
KGANLDYSSDVQVAVPFYGVVDPLTAKTGSASNDFDFVYRNLLGAEPESAPELDSAANPLTYVNSTSTPFLSFMVRRMSL
FQSKIVKSFMMH
>SEQF1778_EEI65506.1 hypothetical protein HMPREF0534_1142 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPTELYEIEGASHMDVKFLQPQVFKIVMDFLDKYLTRP
>SEQF1778_EEI65507.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKWEDIDKHQTAATKEELSIVDTLSFLEVQRIKQGISQIEFAKKIGMTQPQLAKIENLDSIPTLPTLNKYAAGLGLQIK
LSISPLMEAK
>SEQF1778_EEI65508.1 toxin-antitoxin system, toxin component, RelE family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYEVVFYEDKNGNSEIGDYFEKISQSKQKQDKAIYLKMRHQIKMLQALGPVLHTPQAKKIKGYRHQLWELRPMPERVFYG
VWKKNNFVLLNHYAKKKDETDPRQIERALSLLDDWYERKGK
>SEQF1778_EEI65509.1 hypothetical protein HMPREF0534_1145 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVKVCKVGEHLGNIGNFCAPKIIIAVNLFDLIECAGAFNRKIFDYGIYFNSSKAIAILL
>SEQF1778_EEI65510.1 hypothetical protein HMPREF0534_1146 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKQSTTIASIVILIIIAIFALLNTATVVVNLFGAQVKMPLVLLIFICLLIGAIIIYLLSFSNHLKTNKQLKELQSSRVS
KDELKKYQKKIDQLQKENTQLRQQLKSKTTVEKPQDSSTN
>SEQF1778_EEI65511.1 HAD hydrolase, family IIB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKYRFIAIDVDGTLLDDNDKFDVNRLNKDIELLQRQNYHFIIASGNSYDALSTIFQPCPLVTEFVAENGGRLIINGKSV
YGKTHSIATLQQLYAFIKHTFPSPDILSLSGETQTILAEQYRDVPVPFYPHHTYFSDLQKITEPIYNLNIGWAKRKLSQT
IIQGYVNQLNEQFPNLIQATYSGAYGIDILPAGVNKALGLKRLVENYLNGTLDQVVAFGDTSNDIEMLSEVGYGYAMKNA
TDDLLKVADKVTRYDNNHVGLLSEIEHQFINR
>SEQF1778_EEI65512.1 nucleoside deoxyribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNQKSKTVYFCAGWFTDKQNKAYEDAMNAIKANPTVDVENSYVPLQHQYKGLRVDEHPELLQDREWSTATYNGDRVGVS
TSDMLLAVYIPEEEDVGMGVELGMARALGKYIMVVIPDEDFGKPINLMSWGIADNFIKMSELPNYDFNKPSYNFYDGGVY
>SEQF1778_EEI65513.1 hypothetical protein HMPREF0534_1149 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKEHGQVTGIIWRGPDDLAIYQQLKEYADKKGISVSKAAKQLINTALRKD
>SEQF1778_EEI65514.1 hypothetical protein HMPREF0534_1150 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKSLKIAGISIGSLVLLAFGIQGFLLRGTPGQSLSPQNYQDKVDYSSVPTLLIPGWGGSTITYNKMIKYYQQKNIAQKV
LTIWVAPNGRIWTEGNFHGQKNALIQVLFTWNYNGTYHPQIKQLTTVLNYLQKHYHMQKINVVAHSYGGTEFIHAYIGSK
YLQDHMRLNKVVFLGVPVEESLSDQLKYRYHLVNKSTDKNFHQLFLEMKNWQLNYPVEIYNLMGSEEGSKTTDGAVPHIQ
SEMLKSLVKAHPSIRYHQKVYPKTTHFQLHHRTKILNNIANILWGRN
>SEQF1778_EEI65515.1 hypothetical protein HMPREF0534_1151 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDTYSLIIIKFVLGMLCLILQINLLGKGNLAPTSAIDQVQNYVLGGIIGGIIYNSDISVLEFIMVLLIWTLIVFIVKFAK
DHNIWVRRIIDGRPQILIQNGKLLVENCMRAGISANDLMFRLRGHGIYEVAKVKSGILEQNGQLVIIENDEANVRFPLIN
DGQINIDVMELIHHDEQWIFEQIHKAGYGSVDDIYLGEYINGKLTLIPYPKA
>SEQF1778_EEI65516.1 hypothetical protein HMPREF0534_1152 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTFYTISYLSNHQHMNQLFNYIAIIIFILLIAVMAFLYLRHRLITRYRDLGIIFFLLLLLFIGFQVTDMEKSTTQQSQTT
RMIPFIKAVARDHNVSPQKVVVNSTTLTDGILVRIEDRDYRVNLSQTGDNYTLTRAHVVNHQVNLMK
>SEQF1778_EEI65517.1 hypothetical protein HMPREF0534_1153 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILKLVLKLGWILLGSISFVGGIIGMLLPVIPQVPFFLLTIWCITKISPRFHNWLLRNPLYIKYAKPLVNRLENLKHYPK
QKAQKINSK
>SEQF1778_EEI65518.1 hypothetical protein HMPREF0534_1154 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTDLDLKKIHIVFNGQDTPPLKISQLFDANKFNRLTAVTGNVTADFINQYLSRFIKVEVALSSPENYEAKTGDEVITKVA
LTNALLSAANKKPAKVFEALTSDNQANVLNNLFQVAIAPTQAIHSRFYLLSNSETHDTRVILGSLNLDSASFDKERNQYE
EILVFDDDIRLFQNLDNHYKNDIKPVLRPFFTENLLNAAQNQIDESLKDTKGTKNAVVILDNEVTDQIAAADMTDLISHD
VQKQIDENKIPAMITKSMRDITTNRSQDKEEAERRIQQHDTIYTLQKTAVSPRAAKPKLKSREKIFKQVQDALISGMTPQ
QRSAEKKYTTFLYDRPMERNLVNNNSGLYVPNDTGTHPIQFGKIATISQIRDGLKSIDAVLKGYQQYVVDYNDDYGKRFY
EAILYSFTAPFLWEIRAKASLNPEDGNDIPNFLILGATAGSGKSTLLRIINQLTWNTDRSLIDFGTIYPTDTPQKKAKTV
DAIEHYMKLGSSYPVLMDEIEPYFFQQDQYSRHLVVDTMNELVNNPHAIAPLIGTTNYDSGFTMLRETARRTYYLQIDKV
IDDQQKGEANKYIYNVRQTLNNTLFKDFVMRMASLLEDDETPWRAFDEKTGKLDFLANTRKIFRDYYQMADMEVPPYFAD
EICDDFKESSRNRWAKLYLTQEEDFKYRQQDHSLLFDISKLNTFNGFTADSIEKYRNALPIELCVDGINGKRGKFVEIKA
DEFFKWIGERNPYAEDTAENEANNEETLTTNTAEKVTESPVKEQKKGFWARLFG
>SEQF1778_EEI65519.1 DNA/RNA non-specific endonuclease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRFRFNKKTQYLLLSLVAVLGIGSFSQPSDKGSTLPQGIQRVASWRHSSNNNRSSSFTPPTQEQATGVLSNGVRQQLGTS
DIKWNGYGAFILNNNQTALNANINNAPYAVNRRDSRGRAWQGDAWLNRTTRQYRNRNETGNGATNWKPAGFLQAHNLKGG
ISHAYDRGHLLGYALVGGIRGFDASESNPANIATQTAWANEARSSTSTGQNYYEGLVRKALDQNKQVRYRVTDVYDGNNL
VPSGAHIEAKSKDGSLQYNVFVPNVQNNISINYATGAVTQVNTN
>SEQF1778_EEI65520.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMDNQKNEVKLNRTMTPGQMEMIAIGGTIGSGLFMGATSTIKWTGPSVLLAYAFVGLVLYGVMRALGEMIYISPGTGSFA
DYGSKYIHPLAGYLTKWSNVFQFIIVGISDIIAMSQYLNYWWPNLPDWISGLVMIIILTLANLASAKAYGRLEFWFAMIK
VVTIIVMIILGLLVIVLGLGNNWHPVGISNLWSHGGFFTGGFMGFMFSLSVIAGSYQGIELLGITAGEAASPRHAIVKSV
KSVIWRILIFYIGAIFVIVSIYPWDELKAVGSPFVETFTKVGITGAAGIINFVVLTAALSGANSGIYSASRMLFKLSVGG
EVPKVFSKLSKRVVPNVAILTISFWIFLGFIVNMLLSMFNAASANIFVIVYSSSVLPGMVPWFIILISELNFRRNNPAEL
KDHPFKMPFYPAYNYFSLIALSVILLFMFFNPDTRISVSVGAVFLVIMSIIYKLRTQRQDKLA
>SEQF1778_EEI65521.1 LPXTG-motif cell wall anchor domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIAFFDLKNANCFSLRIYIKEYIKEERDNMNHLNHLRVLRNTCLVGLTTASTILSLSLNTPPVLATTQELITQPVSNANN
QKECVQIKRVIYFHLLNEVKKVEQVSYAHREVPNDPTKNAIWIIEPFEEVNVPDQAGFRPSMDKIPTVTEIEDLSQLKSA
VNVYYQPLNKDEGPKKDSKENTLAEKQKEGQAKENKKEEKQDSQDNYPMKEDLGDDNQVTENYEEVNNTRKQQNVHQRIA
GINNRLNRSHRDSRKNDNSDQQILPQTGNETDNLTTFLGLGITVTVAGMSLFSLNRAHKKK
>SEQF1778_EEI65522.1 putative 1-deoxy-D-xylulose-5-phosphate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLHPDYLLNEVNEPSDIKDMSLDELKQLATEMRQLVLERDAKIGGHVGPNLGVMELTIAFHYVFDSPHDKVIWDVSHQS
YAHKMLTGRKLGFLDPDHYEDITGFTSPEESAHDFFEIGHTSTSISLAVGMAQARDLMKPQSHNNVMAVIGDGSLSGGLA
FEGLNNAAKLNSNLIILVNDNQMSIDENQGGLYKGLKELRDTNGESPNNIFKFMGLDYKYVADGNDLQTMIDTFKEIKDI
DHPIVLHVNTLKGKGYEPAVEEKMKYHWRTPFDLKTGEDKVKVSGESYSDTVLAELDKQIAADKPVVAINAGIPGVFDLG
KFKAKHPDRYYDVGIAEQDSITTAVAMAQAGARPVVFQNSTFLQRAYDQLIHDMALNDAPVVMIVRGGSISESSATHQGT
FDISMISDLPNIEYLAPTNVEEMISMLRWAINQTDEPVVIRQPEKPLLHGTPTQDDYSTIKYDIAHRGSEVAIMAVGDFW
ELGERVRKELQDKLNIDATLINPKSVTGIDSDVLHHLAENHDVVVTLEDGVLSGGFGETIARYYGPKGMKVLNFGAPREF
ADNVPTEVLYEWYHLTPKQIVDDIEQVIHSL
>SEQF1778_EEI65523.1 hypothetical protein HMPREF0534_1159 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNIDNAATNKISPFKKLTTEQEQLVNDIISFTKHHLTQNHPAIYTVYGDAGTGKSVILSQLFVHIQKEARTQQNSVLYH
TNNYFLVNHPEILKVYKEIAGPIKELYKKDFARPTSLINQLDKQNQTIDVAVIDEAHLLLSKPDHYNNFYHDNQLVEIIK
RAKVVIIVFDQYQVLRMKSLWTPERLQAITNQYPHKDYHLTHMFRMNASDELVKWFNEFTNYKLTALPASARDHYDFRIY
SDAEEMRKAIVQRNKEVGLSRILSTSGYPSTLDGGKHYIEEGRFKMPWDQYNYTVTPWAELPQTIGEVGSIYTCQGFDLN
YTGIIIGPPISQTPQTNQLQVNLDRYTDVEAFKKRDDLTDPAEIKSLEKRMIMNSLNVLFKRGVYGTYLYAHDPLLRHSL
TSLFEKAGFTLPKEEQ
>SEQF1778_EEI65524.1 SNARE-like domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKERKLSKTWLIVGAIILAVIVLYFIYRTYKPEIDLLLDFNAHNKAKLLHMIRSHGFTDIFLLVALIGILNAIPGMSNSV
VCIFAGLCYGPIVGFLINWVGNILGNSTVMSIIRKINLSKRVKKNKILHYLLQQKHPLIALTIGFMIPVIPSVLVNYAGA
RLNVSRKRYLAMVTVGMAPTSFLYAFGGDAIFKGNIRRLIGVAIAILILIGCYLLVRKIWQNHEEKAATK
>SEQF1778_EEI65525.1 putative excinuclease ABC, A subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTETRLPTQIEVKGGRVHNLKNIDINIPLHKFVAISGLSGSGKSSLAMGILYEEGSRRYLEALSTYTRRRIKLGAQADVT
SVKHIPSALALKQRPAIPSERATVGTMSEMLNVIRLIFSRLGEPVCPNGHCLKPSLEIAEVMSKSGDEMGQLTCPTCGTK
FYAYGAEDFAFNSDGACLRCHGTGKVRELDESKLIRDENLSLADGAVASWHLPGRNFMPSVAEQAGVRIHVPYKDLTLKE
KDFVLNGPQKKFKMDFRSGTGRVFHDFNALYENAHEAVLASAKSSKSERAQKRISEFFHYSTCPVCHGTRLKPELLKQLA
GGLNIAQVSDLTLGELSKWKQDVLAALPSDMKKMATSLFKEFDDNLRPLLELGLDYLTLSRNGNTLSTGELQRIQLARTL
RTQTTGVLYILDEPSIGLHPDNITGLLNVFKELVAQGNSLVVVDHNVDIIKEADWIIEIGPGSGEKGGEILTEGTPSQIA
DNPQSKIGPYLNGTAVLKSRPIANEPASQEITFEVKDYYNLKDVYGEIPVNRLTAITGFSGAGKTSLILDSLVPAIHAQA
SGAKLPSQVRKLSSPLKEVVSVDAAPIGKTNRSTVATYTSIMDNLRKLFAAQPLAKEKHYTPSYFSYNNKQGACPTCGGA
GVVTLDIQFLPDMQQTCPTCGGSRYNEEVQKVKWQGYSIVDLLKLDVRAAMSVFKEVPKIARELQLLDEVGLGYLHLGES
TPSLSGGEAQRLKLVKHLNHNQSETLFVFDEPTIGLHPLDVKTLLAVMQQLLDRGATIITITHDLNLIINADYMLDMGPR
GGSNGGEIVAQGNPLALIQKPESLTSKYLAEYWSRFN
>SEQF1778_EEI65526.1 putative protein CrcB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MINVGLGAAIGAVIRYIITSWWKKLRIDWPLATLFINITGSFLLGILTKNFASNSSIMLLFGIGLLGGYTTFSTFNVELI
SMMDERRWGMFAVYFGLSYLGGVIATICGMMI
>SEQF1778_EEI65527.1 putative protein CrcB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIADLRRFFMNIKTIMSVSIGGFLGGITRYELSVLLGGDGILYANLIGSFLLAFITYYFIERGLLAAWLNAGIGTGFIGA
FTTFSSLATTIVKLESQGIIASIGYFLVSSLGGLALALLGFMLARKYGGSRQDD
>SEQF1778_EEI65528.1 glyoxalase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKMRRIDHIVLTVTDLEQSMRFYHEVFDMPVIKEQSNDDLITMRCGHQLIRLQKIDRPTTLKAADPTIGSADLCLVAGDS
IDDIVHHLNSYYIDIIAGPIVKQGAEGEMTSLYVYDPDNNLIEIAVYKNK
>SEQF1778_EEI65529.1 hypothetical protein HMPREF0534_1165 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYLNLVNELICVLCWGITIRLILIRHLNSETKVTRFNTFAFVLMLLNLIVVLPIFAFLLKNLPIQSVSWLSSLVVATID
VLSTFNLILFCVFSCCTRLRKCPATVQGFLVLGAAVKHGQVPPVLATRLDKAINCWKTHQSAKIIVSGGIVQKAKESEAE
VMAAYLIAHGIPARKIIRENKALNTWQNLAFASQLIKPQETVVVVTSDFHVLRARAYARKMGLNWSFISSKTPWRYCPLT
FIRDYLGIIRDHWWVFCGSTLFLLLVEFILK
>SEQF1778_EEI65530.1 ABC1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTNEEEIKKSARLRKIMQVMRKYHFVSNFYHQTNPQAICQALQELGPTFIKLGQILSTRPDLVSPAYIKELRHLQDQVK
ADSFATVEQTFEEETGKKINDEFASFAEKPFASASIGQVHHATLKDGTPVVVKVQHPEVGKLVNTDLALLRKAVVLFKYV
PQDIAVVDLDKVIDELSTSLLSEVNTLEEAKNGEEFYTLNNGDGPILVPKVYMKYCAPKILVNEAMEGKSIRYRFKQPND
NDQEATTVNHEIATTLVNNFLKQVFVDHYFHADPHPGNILIHELRPDESAKQYATTKHHEKIIYNTTISYDQQEALPNYR
IIYLDFGMMGRLSPAMANSIANIVITINTKDTRKIGKAVLNVCNRTGEVDENAFYKELGAFIQPYFSTGLGNIDFVKMLY
QIVQLCKKNHLQMRGEVTMLIKAFGTLESSVAKLDPEISMLEVAQSFGRRYLKRNFNWRSTLDNNLVNFFLASKAMGKMP
ERINELIDTFVSGDAKVDLRYKNEQRVLKQIERLMNRFMIAIILAAVILGSSLLVQGTPADSHIYRLGVSGYIIAIIIII
LLVVTEIIHRWRNWRRKR
>SEQF1778_EEI65531.1 hypothetical protein HMPREF0534_1167 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNGLWDSYWFKLIIIILILLLAALFTLLEYSVVKVRPSELKELRQTRKVKRAEHMVANLNEYLSTAQVGVTMTSLVLGWL
GDEFITDLLLKINIIPHDVLQAIAPVIGVLIFTFFHAVFTDLVPKNMAIDRPVPILLSIVHPVQFFHTVFYPFVWLFAVV
AAAITKMLGYNVQPEEDTYSQNEIMTLSQQSEKAGEMDKEDVIFMQRAFEMNDKVAEDIMIDRTQLAVIDITASIEDAAK
LYFEKKFTRFPVVANNDKDHILGYIFAYDIMRQNQINPQQSVRTIMRRIPIVYENEQLTNVLAEMMKKQVPIVVVQDEYG
GTSGIITDKDIYEELFGTVGEEIDHATSDMIEKKDPDSKGNPTFEVSGKMPLDDFERYFDTNIEQFDNSEVTTLTGFFLE
RQYDLKVGQPIRVDNFSFTPLDLKNAYVNKFKVVYIKPKKKKPSADDDQNKD
>SEQF1778_EEI65532.1 copper transport repressor, CopY/TcrY family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNINLEITPAEWQIMRVVWSLRQTTSSQIIEILQKKVDWKPATIKTLLRRLVDKKALSATRQGRGFIYEPLVPEQQTMDQ
AADNLFNNICERHVGSTLEHVINNVTLSKDDIAKLQELLASKVTDSPDHVKCNCIPDMQMNC
>SEQF1778_EEI65533.1 putative ATP synthase, delta/epsilon subunit, beta-sandwich domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNQRISHALVIMVFGTFFGLLCSTLMNIALPTFMNVFHISEAQVQWVTNGYMLVNALMIPVSSFLIKRFSFKNLFIIFS
GIFLLGTIIGAIAWSFNLVVVARMIQALGAGMMMPLVNVLAIRYAKPGKKGQIMGIIGLAFNCAPILGPAISGFLLHFFS
WRYLFLLIIPFAVITLLLSFFLLPKIPHNEHPRFNTLALILITGGLWSLLMGLSNVSNSHLLSFNVAGYVLIGLVFLFLF
FLNQRHSKRQLINFRIFSHKQFVFATVINMLITSTMYGNAILIPLLVQIVLGKSTVISAIAVLPGAILTGLLSTTSGRFY
DIYPIKILVGTGLIIDIIGTIGQAAIGARSSVLMITLFQTIRQFGLVTMLIPLQTQALSLLPNEIVPDAVATFNTLRQIA
AAFGTALIVSIVGIVNHLVHNPSSHLGIQAGFLLCLCLLLTSLYLSTKLYHKISSQAQLENA
>SEQF1778_EEI65534.1 hypothetical protein HMPREF0534_1170 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MESWLFLALVLLIAIFGHNSSLIIATVVVMVLKLIPYTAKWLPLIQHKGINWGVTVISVAILIPIATRQIGFDDLWAAFK
TPAGWIAVGMGIAVAILSKYGVNQLAAVPQVTVALVLGTIIGVVAFKGIAAGPVIASGMTYCIVTLLNLHF
>SEQF1778_EEI65535.1 hypothetical protein HMPREF0534_1171 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKPGDVVAIHEGVKYWHGATKDSWFSHIAISKGTSEWCEEVDDATYSRLSD
>SEQF1778_EEI65536.1 hypothetical protein HMPREF0534_1172 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLEFIIKPTINWMLVIMAKNEYEIKNDLLVLVIRTLHLQNTLLEQVISMG
>SEQF1778_EEI65537.1 hypothetical protein HMPREF0534_1173, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
IKELLIMAKQALILYYSQFGDTARLASKIHEATGADIVRIKVPDDTFPLDMEETGRIYQQQLKTHAFPKLVTTLPDLSYY
DLILVGGPVWNGGVASPIIDLLQQIRKFTGKIAPFSTGWSNTGDYQEDFINYAGKLNVTPGYHILTHGSPAFNEKSLFSW
LRKL
>SEQF1778_EEI65538.1 hypothetical protein HMPREF0534_1138 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMLISWVLGLLTCTIYLPLQLWAWLALIIGVGFFVWHIMLRRE
>SEQF1778_EEI65539.1 putative flagellar protein FliS [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEIQYWADIACPYCYMGITQLQRALKELKIADQTPLKFMSFQLDPTLPTTTDLSMTEYYAKAHQLAKQEAATQIHKIDQL
AADIDLPIKMENAIPVNTLAAHRLIKYIESLNDQALLNKAVKRLYQLYFNDNESTADYEALTVAMNEIGLPVADVKKVLE
SNQYEDEVRKNERRAFMIGMPSAPLFVINNKYSITGAQPYEVFLEALKKVKDTTK
>SEQF1778_EEI65540.1 hypothetical protein HMPREF0534_1137, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPSDTMKSPNHIVKKVTSMDNDTRTLLNLTDPHLNFPHHWLKYKVIKNVRVAQISCTLSYTPRACPNCGVINRGQILKYG
FYQAKHKYGQFRAQPL
>SEQF1778_EEI65541.1 hypothetical protein HMPREF0534_1136, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVDRMVQQAVAQILTPIFERVFSDNSFGFRPHRGAHDAIAKVVDLYNQGYRRVVDLDLKAYFDNVNHDLMIKYLQQYIDD
PWTLRLIRKFLTSGVLDHGLF
>SEQF1778_EEI65542.1 transposase, IS605 OrfB family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
YRWEKLRSRRFLKAQQEIAWDHHNKVLVPRQLDDFKNYQKARIMVAKYRQKIANQRLDQLQKFTTKLVKKYDIIVLEKLN
TKGMMKNHHLARAIANASWSKLVDMLQYKCDWYGKKLIQVNPSYTSQICANCGKNNHRLGLNKSEWLAVREWDCPNCGKH
LDRDINAAQVILQKGLAIR
>SEQF1778_EEI65543.1 hypothetical protein HMPREF0534_1133, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
IFSSKNFLLSRAGSFSFTLLPNLSFTYILSYTSNEVLNEKEVHL
>SEQF1778_EEI65544.1 transcriptional regulator, GntR family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFDFNDSMPLYQQIADQLEEMIFSGGFDEGSQVPSTTQLSQQLHINPATVLKGMNILVNKDLLEKRRGLGMFVKKGAQQ
KIMEQRKESFYNDYVKSLLVEAGKLGITKQHLLDLIERGENDGSIN
>SEQF1778_EEI65545.1 chloride transporter, ClC family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKETQENTPLAVATVVLGIVVGFSSLILSAILDLTEHYFLNFNETNKIPVNINIFPLHRFVSVLIGGIIATIIWYFLQRH
YHPVSIKNALNGKEMPLRKTFIHVVTQIFFVGTGNSIGRELAPREAGAAIAQEWSRMLNSYRWLHLNDEDKRLLIAAAAG
AGFAGVYIAPITGTVFCLEILYRRINARSVSVSLIMSVIATMIGSILKGFEPYYIVGSRDFSLLSVPLAIVLGLILGVTG
TWFKQGVKAASSKRATGKNIFWQLPLLSFSAGAIAAFYPQIMGNGRGLAQLAMNTTTVNSQVLGALLFGLVAKVIVTLFT
IKCGGYGGTLTPSIAAGAVIGVFLGIPYMHFFPVVTLTQCAVIGASLFLAASQQAPLMALFMLFEVCHLNFTAFLPLGIG
VAISIGISKWMQEAKARTK
>SEQF1778_EEI65546.1 transposase, IS116/IS110/IS902 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLFVGIDVSSKDLVTSMISEENHEVVFRGNFVNDLKGATELKKQIINTANSNQIDQVIIGMEATSIYSFHPAMFFQEDI
DLKAFNTQSVVVDPKKTKRFHDVFAEDKNDQIDAYYIADYLRVGHYSIGIVRQENYIALQRLTRSRYEIVQSLVRAKQHF
IENLYYKLNKLVISDELNTSIFGSTMMQLLTEDLTTDDLLNISINDLTDYLAEHGRGRFADPEALAKTIQKAVWSSYRLD
KVVANSVDAVLSVYAEEIKAFQKMIKDLDKSIEKVVKVTDDEQILRSIPGIGPVYAAGILAEIGQIDRFDNEAKLAKYAG
LSWREKQSGSYTSDNTPLKRTGNTYLRYYLVEAANLVRTHDPVFGEYYQRKYKEIKHTPSKRALVLTARKLIRVIYFLLK
NHQIYQEKR
>SEQF1778_EEI65547.1 hypothetical protein HMPREF0534_1126, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
VSIFKNGKIVMYDLPTSAIAQKQFKSLNILMKEDLL
>SEQF1778_EEI65548.1 molybdenum cofactor synthesis domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKIAILTVSDSRTLDSDTSGKLIAMKMANAGLSVVDRVIVNDDIVNIQTAYLQLEQQALDIIITNGGTGIAQRDVTIPA
IRPLLKRLIPGFGEAFRQISFDEIGTRALASQALAGFNYRNQLTYCLPGSHNACQTALSKLILPEYEHLLFESSSQRKEV
HHHAH
>SEQF1778_EEI65549.1 molybdenum cofactor synthesis domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTRRTPISVAEAQKKINEIPLKTTTETIPLSEANHRILAEDVHAHYDYPHFRRAGMDGYAILASDDHDFPREFNVRGEI
QAGATWDQPLQPGDAVRIMTGAYVPSDAGKVIRIEKTRPAEDKNKVQIITTESKTNITEAGTDVKSGDIVLAKDQEINPG
GLAVLTAFGVQEVTVYKKPRIAIIATGTELLGPNATIEPGKIFNSNGIMLKNLVGETGGIVDFETQLPDDADLIKQTLEE
QIATHEIVITDGGVSVGDFDFIGDEARKADELLFNKIKQRPGSVTTAFVQNNTLIMALSGNPGACFTGFYLYMEPLIRRY
QHQASRIKQVRAILAAPYNKTNGFDRYLRCTYEFKDNQFYVYPNGINRSGSLANLQTTTCLALIPHSTTPMKVGTETDAW
LLPFK
>SEQF1778_EEI65550.1 molybdopterin-guanine dinucleotide biosynthesis protein B [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAITLQIIGHKKSGKTLITTTLIERLSKEGYRVAALKHDAHNAAMDVPTTDSARMSSAGAKQVILQSATEFFFHQKSNVP
SLTEMVELLSTDNDFVLIEGHKEATQYPQILLLKPGEDPTNVAHTPPLKIGSIFNGTTADLLGKDAIVNWCYDYLKQVKG
DAG
>SEQF1778_EEI65551.1 hypothetical protein HMPREF0534_1130 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIGLVYAGGKSTRFGKDKATYHVPGLPATNIELAVEKLTPFCQQIVVCANEINRAHILKLVGQEPAVQIICDIPPYDHHG
PLSAIIACTSHFSTLQDYLTLAVDYPYLTKDSLAVLARTSNSYIATSQHNHYSLAHFSVSNEQVTTWVDNNDDWRLRSFI
TNKCVCHPLKYRSSNEFSNLNYREVDLNEK
>SEQF1778_EEI65552.1 LPXTG-motif cell wall anchor domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFSKAAKSGTQMTYNDLKKIGEALVDQDPKYAIPYFNASQIKNMPAAYTRDAETGEYADLDIWDSWPVQDPVTGYVSNW
NGYQLVIAMMGRPHHEDNHIYLLYNKYGDNDFSHWRNAGSIFGYNESPLTQEWSGSAIVNSDNSIQLFYTINDTNNAINH
QKLASATMYLTADNDGVHINNVENNHVVFAGDGYHYQTYDQWKAANSFADNYTLRDGHVVQMPNGDRYLVFEGNTGTENY
QGEDQLYNWSNYGGNDRFNIESLFHLLSSDVDYKKAIFANGALGIIKLTNDEKNPQVEEVYTPLVTSNMVSDELERPNVV
KLGDKYYLFSATRLSRGTNIDTLNKANKVVGDNVAMIGYVADSLTGPYKPLNGSGVVVTASVPANWRTATYSYYAVPVEG
KENQLLITSYMTNRGEVAGKGMNSTWAPSFIVQINPDDTTMVLAKVTNQGDWIWDESSNNNNMLGNIQTAALPGEFGKPI
DWDLIGGYGLKPHDPATPNDPETPTTPETPETPNTPETPKTPENPGTPQTPDTPNTPEVPLTPETPKQPETQTNNRLPQT
GNNANKAMIGLGMGTLLSMFGLAGINKRRVN
>SEQF1778_EEI65553.1 KxYKxGKxW signal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLERKEHKKMYKSGKNWAVVTLSTAALMFGVTTVNASADTNTENNDSSTVQVTTGDNDIAVKSVTLGSGQVSAASDATKN
SANANSASSAANTQNSNSQVASSAATTSSTSSASSSTNTDSKAGK
>SEQF1778_EEI65554.1 phospholipase, patatin family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADKKELFHFMLYNAALVLEGGAFRGQYTAGIVDTFLAHHIEFRSVIGVSAGSLCGVNFVSKQYGRAANINIDHRHDRQY
ISMARVFKKQIINLDYLFEDHGYSWQNFNEAAYRRSASHFTAVATSVKTGKTVLFTDPVGEELTNALKASSSMPFLSDPQ
ETSQGPCLDGGITDSIPFDIAQRQGYDKIVVVRTRDINYRKKPSSSAVKKLYDMVYKDYPEFAKAGIDRPLLYNQQTAEI
NRLSCEGKIFNIAPSKPIKIKRIEGNIKKIRALYETGRKEGEEIVPALVDYLAN
>SEQF1778_EEI65555.1 site-specific recombinase, phage integrase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTKKRVYIPKNKTNGQIKGKRKIWVENVKFLTLEEYDQLRETIKLHSRPELVNRNLLLIAIALNNGLRASDVVTLRVGH
VLNKTKTRVIEQKTGKAKTLFWNNCLAEIIDYLNDLNYKDENDYLFPGKQEGHFSVHGFYEMLQRMARKTENNKIVAKIG
THSFRKTFGRQLYKKGVNVEIISQLFNHSSERNTRHYLGIEQEDLDKVVQNFKFE
>SEQF1778_EEI65556.1 putative membrane protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNIKSVPKKQLWGIELNLISLLFSSISPVLNKFSLTSLSPVVGGIFTSAFAAIFTFATILITRQHVSLTNLKSLWLWLLG
GTNAIGIILQYIALSTLSPITVTLIARMYLVYVFFLSYIFLKEKITKWDYLAIILCILGSFFISGSRLQFSDNLLGLICA
FIYPLMYATNNIVAKYLVSDEEPNNVLFFNHFTSALLLFCYALITGTSFSHISSQAVAFNFGGAFFNGFMSLLLFYTSLQ
FITAGKANIVRALGPVIVIIYSSFFFPVQVTPSLVLGAILVILASTIVTFTRTNHE
>SEQF1778_EEI65557.1 respiratory nitrate reductase, gamma subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHNGWSIFLWVIYPYIMLASFFIGTFARFKYFHPSITAKSSELFEKKWLMIGSVTFHIGIILAFFGHCLGMFIPASWTAY
FGITDHMYHIFGSLMMGIPAGILAFVGIAILTYRRMTCSRVYKTSDINDIIVDWALLVTIALGLACTITGAFIDYNYRTT
ISPWARSLFVLNPQWQLMRSVPLIYKIHVLCGLAIFGYFPYTRLVHALTLPWQYIFRRFIVYRRRARVY
>SEQF1778_EEI65558.1 hypothetical protein HMPREF0534_1121 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSYYKMTDSRERGTILARLKMLYEMFGISEATSELSDYLPLLLEFLAYGDYTNDPRRQDIQLALSVIEDGTYTLLKNAVT
DSDSPYIQLIRLTRSLIGSCIKMEVREDA
>SEQF1778_EEI65559.1 hypothetical protein HMPREF0534_1122 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEGFGVIDFRRLTDLKDTFAVLSRLIDYPDTETFSPEIRQLLLTDNALSTATRGELLSLFDELAALSSIEVQEMYAHLFE
MN
>SEQF1778_EEI65560.1 nitrate reductase, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIKAQISMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGVGYPKRWEDEDQYHGGWTLNSKGKLKLRAGS
KLNKIALGKIFYNNDMPELDNYYEPWTYDYKTLFGPEQKHQPVARPKSQITGEGMELTTGPNWDDDLAGSTEYVQQDPNM
QKIEGDIKNNFEQAFMMYLPRLCEHCLNAPCVASCPSGAMYKRDEDGIVLVDQERCRGWRFCMTGCPYKKVYFNWKTHKA
EKCTFCYPRIEEGQPTVCAETCVGRIRYIGAILYDADRVEEAASTPDESKLYEAQLGLFLDPNDPEVVKQALKDGISEEM
IEAAQKSPIYKMAVKEKIAFPLHPEYRTMPMVWYIPPLSPVMSYFEGRDSIKNPEMIFPGIDQMRVPVQYLASLLTAGNV
PVIKKALYKLAMMRLYMRAKTSGRDFDSSKLERVDLTEERATSLYRLLAIAKYEDRFVIPSSQKAEMEDAQTEQGSLGYD
ECEGCALAPQHKSMFKKAEAGKSTNQIYADSFYGGIWRD
>SEQF1778_EEI65561.1 nitrate reductase, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSRFFNKVDKFNGTFTQLEENSRRWEKLYRQRWAHDKVVRTTHGVNCTGSCSWNVYVKQGIITWEHQTTDYPSCGPNIP
GYEPRGCPRGASFSWYEYSPVRIKYPYIRGKLWELWTAAKKEYENPLDAWASIVEDPEKSKKYKKVRGHGGLIRVHRYEA
LEMISAACLYTIKKYGPDRIGGFTPIPAMSMMSFSAGARFIALMGGEQMSFYDWYADLPPASPQVWGEQTDVPESAEWYN
SSYIIMWGSNVPLTRTPDAHFMTEVRYKGTKIVAVSPDYAENVKFADDWLAPEPGSDSAVAQAMTYVILDEFYQKHPVKR
FIDYSKRFTDLPFMVELEPSTANGDHYTPGRFVRISDLVDDDTIVNPAWKTVVYDQNNHKIVVPNGTMAQEYNAKEKWNL
ELLDQNGNKIDPALSINDQGEETEQIIVDFPAFSNDGNSVVQRHLPVKKLKFTDGQEHLVTNVYDLMMAQMGINRTGNDE
LAAKDAMDAESYFTPAWQESRSGVKAEQVIQIAREFAQNAAENEGRSMVIMGGGVNHWFNADMNYRNIINMLMLCGCVGM
TGGGWAHYVGQEKLRPQEGWANITFANDWEKGGARQMQGTTWYYFATDQWRYEEIDNQAQKSPVWKSKHSYLHNADYNQM
AIRLGWLPSYPQFDRNPLSFAKDYNTTDINEISKKVVDELKKGSLHFAAEDPDANQNQPKAFFLWRSNLFASSGKGAEYF
MKHLLGAENGLLAKPNDRVKPQDMIWRDKGAVGKLDLVVDMDFRMVSTPMYSDVVLPAATWYEKKDLSSTDMHPFIHPFN
AAVSPMWESKSDWQQFKLLAKTVSEMAKKYMPGTFYDLKSTPLGHNTQGEIAQPYGEIKDWKNGETEPIPGKTMPSLKLV
TRDYTKIYDKFITLGPNIVNNYGYKVDDQYDYLKEINGTASEGIGAGCPLLDEDEKVCDAILRMSTASNGKLADRAWEKK
QERTGEYLTDIGRGHADDSMSFKQITAQPQEAYPTPIGTSAKHGGARYTPFSLMTERNIPTFTLTGRQHFYIDHEIFREF
GENMATYKPSLPPIVMAPGDVDVPPVKDEVTLKYMTPHGKWNIHTMYYDNLEMLTLFRGGPTIWISPQDADKIKVKDNDW
IEVYNRNGVVTARAVVSVRMPEGSMYMYHAQDNEIYEPLSTITGNRGGSHNAPTQIHIKPTHMVGGYGQLSYGWNYYGPT
GNQRDLYANVRKLKKVNWSED
>SEQF1778_EEI65562.1 ThiF family protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTSFIEWLTNIKNKVSLFPNVKISTITAILRLGKYLYFELNEVLISMNRYDRQERVHQIGSIGQQKISHATIMIVGVGAL
GSYTAEQLVRAGVKRLILIDPDTVDVTNLQRQSLFTEEDASQQRLKVEAAKEHLHKINSVCQITAIPAPITADLIDEYQF
TLCLDCLDNYQARDLLNKLAIIKNFDYLFASCAGTYGNVMAISPQNHPCLNCLFPNINELKQNDCDLIGVNTALIPIVAG
LQVSLALHYLVDKTQVNFNELIAVDNWSMQFSKFAINKNYHCPTCAKPSSISLEEESAPELHMLCGENAYYTIKEKPINF
GRLKEFLAKKELLINANRLFLHFKWENRPVSI
>SEQF1778_EEI65563.1 putative enoyl-(acyl carrier protein) reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGNILTGKKIVVMGVANKRSIAWGCAQMMAEQGAQVIYTYQNSRMKKSLQRLVDDEDQLIECDVADDESIDQAFTIIKER
FTKVDGIVHAIAFAKREELAGSILGASRKGYAIAQDISSYSLIAVAKVANELNLLNNPASIVTLTYFGSERAIPNYNVMG
IAKAALEAGVRYLARDLGQKRIRVNAISAGAVKTLAVTGIKGHDELLKMSQARTVDGEDVTISEIGNVCAFLMSDLSTGI
TGDTIYVDKGVHLI
>SEQF1778_EEI65564.1 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEQLSASEIVKRARSDNKITGMEIIQNVFPDFVELHGDRAGGDDPAIVGGIATFYQQAVTVITTDRGKTTDDKIIKHFG
SPMPSGYRKALRLIKQAAKFKRPVFCFVNTAGAFPSKEAEENGQGSAIAQNILQISQLAIPIITIIYGEGGSGGALALAC
GDEVWMLENSTYSILSPEGFASIMWKDSTKADKAAELMQMVPQALLKQGIIEGIIPESEEHRKTCKNIEQVLLKRLNKLQ
ELPPNQLLANRKKRYRKF
>SEQF1778_EEI65565.1 acetyl-CoA carboxylase, carboxyl transferase, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKGADSVKLYDQNNTLSERHIKADKNADERVPDQMWLRCPHCHQLLFAKQLTQYAVCPNCDYGLRIPARHRLSWLVDSF
KEFDKDLQTKNPLHFPGYQEKISKLQRQTKLNDSVLTGEASINDQLFSLGIMDPTFIMGSLGTVTGEKITRLFEYATTHR
QAVVLFTASGGARMQEGIMSLMQMAKVSQAINEHAAAGLLYIVVLTDPTTGGVTASFAMDGDIILAEPHALVGFAGRRVI
EQTIHQQIPVDLQSAENILHHGFIDRIVKRQDEKKLLEWLLKTGSVANE
>SEQF1778_EEI65566.1 acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFSKVLVANRGEIAVRIIRSLRELGIKTVAIYSTADRESLHVQLADEAVCVGTARAQDSYLNAKNILEAALGTGAQAIHP
GFGFLSENAEFATMCEECGITFIGPQASVIDLMGNKEHAREQMKKSGVPVIPGSDDYITNVNDAVDVANKIGYPILLKAA
AGGGGKGIRRINDHNQMRQIFSEAQNEARLSFNDDRMYLEKIMENVKHIEVQVFRDNFGNAVFFPERDCSIQRNKQKLIE
ESPCVLVNEQERKKLGQIAIRAINAINYHNTGTIEFLMDKNHHFYFMEMNTRIQVEHTVTEMVTGIDLVKAQVIVAANEP
LPFTQQDIQVNGHAIECRINAENPKQNFMPVTGTINYLYLPVGNLGMRIDTAIYPGSKITPYYDSMIAKVIALGQDRQEA
IEKIKRLLNEMVITGVTTNQNFHLAILNNPKFLAGTASTTFLEDSFLPQWKKELTA
>SEQF1778_EEI65567.1 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNKTLDITEIQKILPHRYPMLLIDQVDELIPGKKAIARRNVTINEEVFNGHFPKNPVLPGALIVESLAQTGAVALLSQE
EFQGKTAYFGGIRSAEFRKVVRPGDTLKLEVNLEKVHKNIGIGKGIATVDGKKACTAELTFMIG
>SEQF1778_EEI65568.1 acetyl-CoA carboxylase, biotin carboxyl carrier protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEFKEIQTLMQNFEDSDIRELEINQDSFQLYLSKNKQTHKHENLITTEKTEQIPSVKKKANEQPTLPSQNITAPLVGTVY
LQPTPDADPYVRSGDHVKKGDVVCVIEAMKMMTEIKSPFNGIITSICVSNEELVEVEQPLFSVQEDKDND
>SEQF1778_EEI65569.1 beta-ketoacyl-acyl-carrier-protein synthase II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTRVVITGMGAVAPNGNGIQEFISNSFAGKVGIKAIKKFDAKPTGITVAGEIDNFDPNDVIGKKAARRMDLYSQYALQSA
IEAMEMAEINETNTKPVDMGVIYGSGIGGLTTIQEQIIKMHDKGPKRVSPMFVPMSIANMAAGNISIHFNAQNICTSIVT
ACATGTNAIGEAFRQVKEGRAKVMIAGGSEASVNEIGIAGFAALTALSQATDPLKASLPFDKARQGFVLGEGGATLVLED
LEHAQKRGANILGEIVGYGATSDAYHITSPDPTGAGAARAMELAIKEAGVSPSEISYINAHGTATHANDEGESKAINQVF
GSDSNVRVSSTKGMTGHLLGAAGAIEAVLTVVALQNGQLPLNIGCFNQDPKCSVNLVTAENSDASNARYAISNSFGFGGH
NAVLAFKKWE
>SEQF1778_EEI65570.1 putative 3-oxoacyl-[acyl-carrier-protein] reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELTDKVVFISGSTRGIGAATALEFAKAGSRLILNGRQDDLPKTFKEKLDLLGADYHYLKGDIANEKSVSELAAAAWKIY
DKIDILINNAGITNDKLMMGMKASDFDQVINVNLCGTFMLTQPIFKKMLKKRAGCIINLASIVGLHGNTGQANYAASKAG
IIGLTKSIAQEGARRGIRCNAIAPGMIASDMTEKLSERVKDQLLNRIPLNRLGQPEEVAKTAKFLAENDYLTGQTIVVDG
GMTI
>SEQF1778_EEI65571.1 acyl transferase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYYGILFSGQGAQQSGMGVELMADSLFSRIVSQASAVCELDLLKIMKNEHKELNKTAYVQPAIVTVSYGIYRMLKRDLPQ
LPIKGMIGLSLGEYAALIASNALSFEEGIKLVADRAHFMQQDADREISTLAAVLDPQLQEIQELITAQQENNQRVYIANY
NSPQQIVVGGTLTDLKATLKKIEEDNLAKRTILLKVNGAFHTPFFNGARQQMHNRLQTVDFHEPQIEVISNTTNSLFHCE
DLPGILEKQLAVPTHFGANVKELVKHAKIDTTLEIGPGKTLSRFAHQVDQQLNTQHIENLADYEKFIKEQKDGTDR
>SEQF1778_EEI65572.1 putative acyl carrier protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDMTKEEIFNTVKTITVDELDVDENRVTMDARIKDDLDADSLDVFEIMNELEDKFEIELDADEGIETISDVVDFVKKQLD
EK
>SEQF1778_EEI65573.1 beta-ketoacyl-acyl-carrier-protein synthase III [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQNLRITSTASYHPPLKITNQQLSTIMNTSDEWIKTRTGIHQRYISNTENTSDLAVNVGTQLLTNANLKATELDLIIIAT
MSPDAYTPSTAAIVQGRLGAKNAIAFDISAACTGFIYAINTAELMLKSSHWKNAMVIGAEVLSKLIDWQDRSTAVLFGDG
AGGVLLQKTTTTTPLILGRDLHTFGDLGDKIIAGKTTPKTGFPKQLTSLSPFTMAGRDVYRFATHEVPRSITSAVQQANL
KLDDIDYFLLHQANERIITQIAKRLAQPITKFPMNISEYGNTAAASEPILLTQAIAHELIKPGNIIAMSGFGGGLSTGTI
ILNY
>SEQF1778_EEI65574.1 transcriptional regulator, MarR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKDNDYEKINKGLIKVYSGILWIEENELRKSTFNDLTIKEMHAIDAITMYNHQTISQVAEKLHLTPGTMTSMADRLIRK
GYVERIRDKDDRRIVRLCLTKRGRVLYRAHRAFHNMMVERFLKGMDDEEMKVVKKALQNLEDFVDEHA
>SEQF1778_EEI65575.1 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIMNAQEIMELIPNRYPICYIDYVDKLVPEEKITATKNVTINESFFRGHFPNNPVMPGVLIIETLAQAASILILKSPHF
YKKTAYLGAIHKARFRQMVRPGDVLKLNVVMKKVRSSMGIVETQALVNGKLACSAELVFIVAEREEKI
>SEQF1778_EEI65576.1 site-specific tyrosine recombinase XerS [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVFFQATLFSIKEDIKMEADKYLKLIQEELQNLPDYVNEYYLGTNHAVTTTYQYLTEIRRFFDWLRSSGLVSVNSNKDL
PIDTLANLRRSDVMLYIDYLQHTTNAQGRLNSPTSINRSINALRSLYKFLTVTADNNNGESYFDRNVMLKIDSLNDTKTL
NYRAHTLASHMYRGQMKFDFITFIEKEYPNKCDKRALPSYKVNKERDIAIIALILGTGVRVSEAANVNLGDLNLKQSLLD
VTRKGGQRDSVPIAPWAITYIKAYQAIRAQRYHALKKDTAFFLTVYHKQTRRMTANAIEKMVKKYSTAFGHPLTPHKLRH
TLASEMYEVTKDQVLVAQQLGQKGTSATDLYTHVDQKQQRDALKEISETSYKKTNE
>SEQF1778_EEI65577.1 hypothetical protein HMPREF0534_1114, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGFITSLFGKKQYVCPFCHEHYTFSAMHARKLADKDGQIHCYYCRKVL
>SEQF1778_EEI65578.1 hypothetical protein HMPREF0534_1099, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVLPLNYTRISATNIILSSYPIKSNTFFKKSLFYFKKLIN
>SEQF1778_EEI65579.1 glycine cleavage H-protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKDYFWVKEQADGTKRVGLNDEGRDELGEVSFIDVPAVGTTLKQADKFIAVEAEKAVTDVDSPIDGKITKINEAIIDDP
AGLNSSDMEKNWIVEVK
>SEQF1778_EEI65580.1 cell cycle protein, FtsW/RodA/SpoVE family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQRSQNDVESRIDWGIIFCVLLLALIGLASIYVAAVHDRQQTSVARQVITQLVWYAVGTILIIVIMQFDAEQLWKLAPIV
YWLSVFLMFAILVFYSRAYYASTGAKSWFAIGPFTFQPSEIMKPAYILMMGRVITTHNNRYSVHTVDSDWRLIGTMFLWL
LPILISLKFQNDFGTGLVFFAIFCGMVLVSGVTWRILAPAATILVVVGGSALAMVTSSVGRQILEHVGFQAYQFDRVDTW
LHPEQDTTNQGYQLWQSIKAVGSGGITGTGFNNSKVYVPVRESDMIFSVIGENFGFIGGVLLILIYLLLIYLMIRVTFDT
KNEFYAYISTGVIMMILFHVFENIGMNIGLLPLTGIPLPFISAGGSSLIGNLIGIGMVMSMRYHHHSYMFSSNREFR
>SEQF1778_EEI65581.1 hypothetical protein HMPREF0534_1073 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKKDKKVEVSVKDIERRNQPVQQIFIGDRLIGEVVTDNERFKAMLISDQSEFYVRSQEEGLEIVLQQYHLHQH
>SEQF1778_EEI65582.1 hypothetical protein HMPREF0534_1074 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLEALQRFGLKGILLGSWRLLRCQPFSRGGYDPVPNHFTFRRQG
>SEQF1778_EEI65583.1 cell shape determining protein, MreB/Mrl family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKDIGIDLGTANVLIYVQGKGIVLNEPSVVAVDTKTNKVLAVGSEAYRMVGRTPSNIRAIRPLKDGVISDFDVTQEMLS
YFIGKLSVKGFMSKPNIMICAPTNITEIERKAIIQAAEQSGGGKVYLEYEPKVAAIGAGLDIFKPRGNMVIDMGGGTSDI
AILSLGDIVSSQSIRMAGDKMNSDIASYIKNKHGLVIGEHTAEKIKMELGTALRVDDPETMDVRGRDVATGMPKQITVNE
NEIEEALHDTLEQIVSAAVNVLETIPPELASDIIDRGIMLTGGTSLLKGVDQLFSARLKVPVVVSQDPLDNVAKGAGEML
ERMQKTERKK
>SEQF1778_EEI65584.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKIVVKGGQRLTGRVKVEGAKNAVLPIQAASILASSGNIKLSNVPILSDVTTMNQLLRFLNIKVDFDKNKHVLTIDAAD
PVLSEAPLEYVSRMRASMVVLGPLLARTGHAQIALPGGCAIGSRPIDLHLKGLRQLGAVIEQHDGYLEARAEHLIGDHIY
LDFPSVGATQNLMMAATLAQGITTIENAASEPEIVDLANMLNKMGARVHGAGTDIIRIQGVNFLHGCEHTVMPDRIEAGT
FMIATAITNGDVVVEGAIAEHNTSLIAKLEEMGVTVIVQEDGIRVLGTSVLIPTNIKTLPYPGFPTDLQPQMSVLQLLAN
GTSTLDETIFEKRFMHLEELRRMNADFQINGPVAVLNGPTRFSGAEVAASDLRAGAALVLAGLVADGITQVRNLKYIDRG
YYHLHQKLQQLGAKIDRIDVEDKIKLAVKPSKNKTNQD
>SEQF1778_EEI65585.1 putative membrane protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEFSLKEGDRLQITGLRALIEIIVQLAFVWLAFFAIQGIHFEHFFNRPPRTLPLLIVLMATGLGYLCATFFLNILSAIG
NLTYLIR
>SEQF1778_EEI65586.1 ATP synthase F1, epsilon subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAENTFKVTIITPDGTVYDNDKVTILVMNTAGGQMGIMANHVPLIAALEISTVRIKHSEGTDEVAAVNGGIIQFDGQNAT
IAADSAEMPEAIDVERAQRAKKRSESAIEEAKKKHNQSDLSRAEVHLKRAINRLNAASKQRNI
>SEQF1778_EEI65587.1 ATP synthase F1, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSGKVLQVIGPVVDVEFPLDEKLPEINDALKIKESDGKTLTTEVALELGDGVVRTIAMDGTDGLQRGMEVENTGASISV
PVGDDTLGRVFNVLGEPVDNGPKFGPDAKRMPIHRDAPKYDDLNNATEILETGIKVIDLLAPYVRGGKIGLFGGAGVGKT
VLIQELIHNIAQGHNGISVFTGVGERTREGNDMYYEMKASGVLEKTAMVYGQMNEPPGARMRVALTGLTIAEYFRDVKGQ
DVLLFIDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATEMGQLQERITSTKKGSITSIQAVYVPADDYTDPAPATTFAHL
DATTNLERRLTQIGIYPAVDPLASTSTALTPEIVGKEHYEVATQVQHVLQRYHELQDIISILGMDELSDEEKTIVARARR
IQNFLSQSFSVASQFTGLPGKYVPLKETIKGFKEILAGKYDDLPEEAFRLVGPIEDVVEKAKKMKAETDEDSSED
>SEQF1778_EEI65588.1 ATP synthase F1, gamma subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPASLAAVKHKIDSTKSTRQITSAMQMVSTAKLNQIQHHTQTYEVYAEKVKQMLSDLVKSHSATSAASQDDVYAALFKKR
AVKKTGVLVITSDRGLVGSYNSNIIKQTLDMMAKHNLDKDNTVFLTVGKTGTEFFKKRGMNVVYEYSGVSDVPTYREVHS
IVKTAVQMYSDQVFDEMYMVYSHYVNRITSNVIVHDVLPITEKSLLNDENEAQENTELNNSDVSTAHVSAEYEFEPSDTE
IISALVAQYAESLIYGAILDAKTSEHSSSANAMRSATDNADDIISTLELQYNRARQAAITTEITEITGGMTAQE
>SEQF1778_EEI65589.1 ATP synthase F1, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIKTEEISSLIKKQLANYQDKVSVEETGTVTYVGDGVARADGLDNAMAGELLEFSNGVYGMAQNLESNDVGIVILGDYT
GIREGDTVKRTGRIMEVPVGDALLGRVVDSLGRPIDGLGEIKTDKTRPIERKAPGVMERKSVSVPLQTGIKVIDALVPIG
RGQRELIIGDRKTGKTAIALDTIINQKNQDVICIYVAIGQKESTVRASVETLRKYGALDYTIVVSASASNPAPMLYIAPY
AGAAMGEEFMFNGKDVLIVYDDLSKQADAYRELSLILRRPPGREAYPGDIFYTHSRLLERAARLSDDLGGGSMTALPIIQ
TQAGDVSAYIPTNVISITDGQIFLDSDEFYAGQRPAIDAGTSVSRVGGDAQIKAMKKVAGTLRLDIASYNELASFAQFGS
DLDAATQAKLARGQRTMEVLKQGLHDPLPVEEQVVTLFALSRGFIDKVEIEDVQRYESELAAYMHANHQDLYDTIKKTGK
LPEGDDLQNAVAKFSETFQGTKKQAAEEK
>SEQF1778_EEI65590.1 ATP synthase F1, delta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLDKKTVADRYAKALFELVDADNELDQTYQELIALRQVFEDNEGLDAALAGVQLSLDEKKSLIKDLQQGASKYVANLIQ
MVFDYGRIDCMVAIIDEFERRYDRKMKRMHADVTTAIQLDKQQEDQLKANLAKRFGANEVTLTEHVDPEILGGVIVHVDN
KTLDGSLSSKIKQIRRLLVR
>SEQF1778_EEI65591.1 ATP synthase F0, B subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFVNSVLAESNSLYIGDLVFYIVTFIILMLLVKHFAWKPVTDMMKKRADKIANDIDNAARSRESAEKMAAKRQAELQSSR
QEAAEIVSNAKKSGETQRAQIVETAQKDAQALKQQAQKDAEQARRDALNSAKDDVANLSIEIASKLIQKELKADDQKELI
DSYIEGLVEHES
>SEQF1778_EEI65592.1 ATP synthase F0, C subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALGAIAAGLAAMGAAIGGGIGDGILIGHTVDSIARQPELQSRLQATMFIGVGLIEAMPIIAIVIGFLVMNK
>SEQF1778_EEI65593.1 ATP synthase F0, A subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGDALTFKLFGLTFNTTNIVSGLIIYAIVFFTLYGMSRKIQMKPTGAQNVFEWLVDFTNGIVRSQMPASEQGHYSFFAF
VLFVFIFFANQFGLIFQFHWNGAEVLRSPTADPVVTLTLSLMVMVLAFAAGVAHNGLGGYLKGYTKPFTLMLPVNIIEDF
ANFLTLGLRIFGNIFAGELLMSLIANMAFSHGILTIIPGLFLELAWQGFSVFIGSIQAYVFVTLTTVYISRKISE
>SEQF1778_EEI65594.1 putative permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAHRDNVVLDVDERPAPWQWFGLSLQHMFSMFGSTVLVPILVGLNPGIALFSSGVGTLMYLLITKHKIPAYMGSSFSFVV
PMMALMKTTGYPGIAQGTIAVGCVYLIVSVIVTLVGSQWIDRILPPIVVGPIVVVIGLSLAGTAAKDATINSATGHYDLR
FFAVAMLTMAITVIFNMYFKGFLGLIPILMGIVAGYIIAVLFGIVDFSPVAHAHWFSLPDFQIPFVDYHPQLYWGAILSM
APIAFVTMTEHLGHIMVLNELTERNYFKEPGLNHTLAGDGTASIIAGFVGGPPVTSYGENIGVMAITRVHSVYVIAGAAV
FAIFFSFIGKLSALIESIPSPVIGGISFLLFGVIASSGLRVMIENKIDFNEKRNLMISSVILVIGIGNAYLQLGKYQFSG
LAVAAVLGIIMNLILPQKAKSEM
>SEQF1778_EEI65595.1 YibE/F-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTITGLGLVLLILMVLVGGKQGWTAFLSLLLNFGFLYFAIILVAFHVPPLFVTVTIGITILAITIFMGEDDLRTTVTAF
YASLIVLCLILVLIFIVEHWAMVQGFGTEDSDELEGMSILIGISYFKVSVTTTILSSLGAIAEAAMAISSGLTEILENHP
ERTNRQLIHSGMAIGQQIIGTTFNTLFFGFFGGFLALFIWFLGLHYSFGTIMNNKIFVAEMIEILLSFIGVLITVPMTAW
VMTKRRKSVVDNYPKTK
>SEQF1778_EEI65596.1 YibE/F-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKQYWTKQRIWLLIFLMVVGIGALLFTSHNEQFYQQPIAKVISKKTMSKQRVKDQFDNVDHQYNQQLQVKLMNGKYRGQ
KLTVQNTYSDSQPMDQRYRVGNEVFLTQLRKRGGKLTANVNGYKRDTVIVFLLWLVVLMLLLLMGRSGMFAFLSVVINAL
LFIIAIEIDLKQNGQHIMLLFSVLAIIFTFISLLLVLGFSKRMLATFAATVIGTFVALGVSMLVFMWTHERGIYYESMEY
VTQVPRPLFLAETLLGSLGAVMDESSDIIATLFELKQLNPAATRKQLFISGRNVGKSIMGPLINVLFLIFMVDTFTGSLL
YIKNGNSWGYTYAMNMSLGTIQSLISGIGIVLSVPLVSLFGALLLGKKVQR
>SEQF1778_EEI65597.1 phosphoenolpyruvate-protein phosphotransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METQINGIAASDGVGIAPAYLLTKPNLSFEKYHISDPDSEKARLHYAFEKIIQKLKETKKKLVNKLNAENLAIFDTHIAI
LNDPEMIKQVENRITNQRLNAESAFAEVITKMIKTLQAMTGNEYMQERASDFQNIQDQVLAELEGKKLPNLRELDHPVIV
VAHSIGPADTSQMDGRFVKGIITDLGGRTSHAAIMARSLQIPAIVGCNDITKKVQNGQRVIVDGFEGSVIVEPSTNDVKQ
YQKIADKFMNVRQQWKKMINQPSVTADGQRYKISANIGSSVDISSAIENGADGVGLFRTEFLYMKSDHLPTEEEQFNAYR
RAVEQLNGKRLVVRTLDIGGDKPLQFMPLPQEMNPFLGYRAIRIALDRPEMFRTQLRALLQASEFGKINIMFPMITTLEE
LRAAKKIYYEEQQKLAVDHPGIGRDIHLGIMIEVPLAALNADRLAAEVDFFSIGTNDLIQYCFAADRGNDSVSYLYQPLN
PTFLKLIKHIIDAGHAHNTTVAMCGEMAGDHYALPLLIGMGLDVYSMSASSILRTRSMMKQLDSKKCQKLYQQAVTTCDS
MTGVKKLVQDWLVAN
>SEQF1778_EEI65598.1 uracil phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKFKGVYIGMGKFEVLDHPLIQHKLTMIRDKNVGTKFFRETVKEISTLMAYEVARDMPLKDVEIETPIAKTTQKELAGK
KVAIIPILRAGIGMVDGMTDLIPAAKIGFIGMYRDEETLKPHEYFVKLPNDITERQLFIVDPMLATGGSAMMAIEALKKR
GCSEKNMKFACLVAAPEGVKAVRDAYPDVDIYTAGLDDHLNEDGYIVPGLGDAGDRLFGTK
>SEQF1778_EEI65599.1 glycine hydroxymethyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNYGKKSPQLWAAIENEEQRQQDTIELIASENIVSDAVREAQGSVLTNKYAEGYPNKRYYGGCEFIDQVEQLAIDYAKKL
FNAAYVNVQPHSGSQANMAVYQALLKPGDVILGMGMDAGGHLTHGATVNFSGKLYKTYGYGLNPDTEELDYDEIMALAKK
VKPQLIIAGASAYSRIIDWQAFRKIADEVGAYLMVDMAHIAGLVATGVHPSPLPIADVVTTTTHKTLRGPRGGMILSKST
KLGRKINSAVFPGIQGGPLEHVIAGKAQAFYEDLQPEYTEYIQQVVKNAQAMEKVFNTSKQIRMVSGKTENHLLVLDLTK
TGLTGKDAQNLLDRVHITTNKEAIPNDSRSPFITSGLRIGTPAITSRGFKEEDAQKVAELISTALTNPTDEECLQEVAKG
VHELTTNYPLN
>SEQF1778_EEI65600.1 Sua5/YciO/YrdC/YwlC family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGFFKRRRKIVRMDTKIFRHGEIAQAAAAIKRGELVAFPTETVYGLGADATNEKAVKNVYLAKGRPSDNPLIVHVNSIAM
VKKYAAEIPDNARKLMDAFWPGSLTIILKIKKGALSKTVTGGLKTVAFRYPDCQPTLDLIEEAGVPMVGPSANTSGKPSP
TTAQHVYHDLHGKISGIVDNGPTRVGVESTVLDMSTDHPVILRPGAVTKKDIEKVIGSIDLNHHKVGKNETPKAPGMKYK
HYAPKAQVYIVDEDTNWDKVVEWIRQQPFDVGMMAEEKVLQQEVLPMNAIQFSLGKNVQDASARLFDGLRQFDDQPNVKA
IVTQAFPAHDLGGAYMNRLNKSAGGMHFDRNAVK
>SEQF1778_EEI65601.1 protein-(glutamine-N5) methyltransferase, release factor-specific [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSFVPTNYFMAQRWAKEQLQGTDIDPSAPQFLLQQSHGWDATHLLLHNRDEMPADEVDWWKDAITRLLNHEPAQYIVGQ
APFYGRTFKVNKNVLIPEAETAELIDWVLQEMPSRPLRVLDLGTGSGVIGITLALERPNWHVSLSDISPAALAIAQENMA
KFNLELPLIKSDLFENIDQQYDLIVTNPPYIDPDDTGEIDQAVLENEPALALFASEHGLGFYHRLFKQAGQYLTTTGQIF
GETGYDQEESIQELLHQTDEHAQICPRHDVAGKMRMIHAWDFSNVGGR
>SEQF1778_EEI65602.1 peptide chain release factor 1 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEMEEIFDKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNQYKKVTQTISDDEELLRETNDDDLTA
LTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGDEASLFAADLYNMYLRYAEKQGWKVEVVDRNETEV
GGFKEIALMITGDKVYSKLKFENGAHRVQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHV
NKTSSAVRMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQQEQSAYDQKRKDAIGTGDRSERIRTYNYPQNRV
TDHRIGLTLNKLDKIMAGDLDEIIEALIVADQTQKLEQLRNE
>SEQF1778_EEI65603.1 thymidine kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAQLFFKYGAMNSGKSIDILKVAHNYEEQGKPVVLMTSGVDDRSGRGIIASRIGLERKVKPIMDDTNIYDYVNKMDRKIY
CVLIDEAQFLKKEHVLQLIKIVDELNIPVMAFGLKNDFRNELFEGSKYLLIYADKIEEMKTICWFCPHKATMNLRIHNGK
PVYEGEQVQIGGNESYYPVCRKHYFHPQLKQ
>SEQF1778_EEI65604.1 Mur ligase middle domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNGGSSLPGKLTLKLDPNILQAFSKKYDLVIVTGTNGKTLTTALSVRVLREKYDQVLTNPTGSNMEQGIVTTFITAPCPK
KKGLAVLEVDEANVVKVCKYITPIAFVFTNIFRDQMDRYGEIYTTYYKILKGVKLAPKATIIANGDEQLFNSKDLPNPII
YYGFNHEEKEPFNAPANTDGLLCPKCQHILKYRMRTYAGLGNYFCPNCGFHRPELTYAVTKIDKLTPTHSTFEIDGQKYT
IGIGGLYNIYNALAAYSLGRFLGVSQAQIKDAFESDERVFGRQEVINIDGKQVTLILVKNPVGLNQVLDMIETDDKPFSF
AFLLNANYADGIDTSWIWDGDFEKLTQHQIPQYMTGGERYKDITTRLTMAGVKDMWHEPDLTQVIDKIKEMPTEHVYILA
TYTAVLQLRKQLAEKGYIKGGMD
>SEQF1778_EEI65605.1 CobB/CobQ-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKYHLHLAHLYGDLLNTYSDVGNIIALQYYAKQMDTDIDVKVISIDNDFNPQDFDLALFGGGQDYEQLVVSKDLPNKKA
GIDKFINDGKPLLAICGGYQLLGHYYIGADGEKIPGLGILDHYTLSQDNHRFIGDITIKNEESNQEYHGFENHNGRTFLG
KGERPLGKVISGNGNNGEDHTEGAIYKNTYCSYFHGPILTRNGEIAKKILLAALEHKYPDADLSSQKALKIKPTF
>SEQF1778_EEI65606.1 hypothetical protein HMPREF0534_1098 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNQTITFVFTIIFLLESFCEVRLFSQLQALAIQNPTRIPPRFAKVIRLERRWNWISWILIILLFLTSSNFTILWVSLITL
IETYVVWRMDNMKSKMTSED
>SEQF1778_EEI65607.1 hypothetical protein HMPREF0534_1070, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
CRPQHYRENKAHCGRKAIQLPTDEVTYIKAKVAQGWTPDTIMGRAERPLKL
>SEQF1778_EEI65608.1 hypothetical protein HMPREF0534_1068 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQTAEEQIKELKQQLAMANEKIAQLTAIIKLQKNQIFGKKTEVMEPVVDGQQSLFSEQEMDQLQDPDISVTEVTEKKIK
QVVRHGKQNNLVSGPLF
>SEQF1778_EEI65609.1 hypothetical protein HMPREF0534_1069, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
LDWLLQGLNPLPIRKIQAVRPGSFY
>SEQF1778_EEI65610.1 hypothetical protein HMPREF0534_1067, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEQNEIITPVFKNKPSNLQKHSFTARPAVKINVNEVELTIFKGTNSVLASDI
>SEQF1778_EEI65611.1 transcriptional regulator, ArsR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSKSADITCDQTLVETDKVMKVSEFLGKSRIKKYFYVLSKISDEKKLKIIFSLIAQESLCVCDIAYILGCSIATASHHL
RMLYDADILDRQKKGKMVYYFIKDDDLKKILAQLDR
>SEQF1778_EEI65612.1 cadmium resistance transporter family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFFAVILHYVPDKRLLGFLGIIPVFLGIKALILGDSDGEKMANEKLKDTNQNNLIKTLIFITIVSCGADNVGLFVPYFIS
LALPKLLITLIVFLIMIFLLVFIAQKSVSIPTVGTVLEKYSRWFIGIVYIFIGGSVLIENGSIQLFINLIK
>SEQF1778_EEI65613.1 hypothetical protein HMPREF0534_1066 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLGTIIAGVVTYWSTAIDLLIILMLFLRKLKIKRVLEIFI
>SEQF1778_EEI65614.1 integrase core domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
ETCIHFGYRSPGSVYQWECLYNKQGPQALLRLRRGRKPKNGQTTRQESRQASSAPKTEPNLTKRKLIVKDTTRCLKKIDS
LEKASKKELAQVIYDLKAKYLLKDLIDALPISMSTYQYWQNRFEHPDEDEEELKAVIKGLFNYYQAEYGVRRLSTQIRDY
YRLIGKKTPNHKRIQRLMHEMGLKCIKYNRRVRKYDSSKGPNGKKAKNKLNRRFMSNRKYQKMVCDITELKAHDGRKVYL
EIIKDLATNQLLTWSISQHPNLQFALDPLQQLLKQLPHTGYQLTLHTDQGWHYQHRAWRKLLRQGNIRQSMSHRATCLDN
AACETVFSKLKAEIGPDTSYRNQEELSQAINEWIHFYNERRIQTKLGNQTPLQYEQNLVA
>SEQF1778_EEI65615.1 hypothetical protein HMPREF0534_1048 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMSPKSIARWQELKAKKLSGRTVPEDMEYKKLQMKHNADVLALNELKWKAELAEAMLTLASNNDDLMQRLNSIINSQIGD
DQKPFAKKDLHDFVTAFVAKIKQEQQEQSHAKPLGKNPLHDNEFPNGNNPD
>SEQF1778_EEI65616.1 putative flagellar protein FliS [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGDDNMSIKCTVTTDLQAKDKNGYSGIQKHVEHDKKINHTNQDIVFSETQFNQYDKSPKTRAAIDQWNNEHFKDYVEEHD
KHQREKGHAERQYGSVKNYLKRKKKATAVLTIGNMEVQSKLMQQFCPKTSYQEEKLPDGTTHLVFKLKDQNGQPIPDNIA
VAKQFYDCFNRALIKATNNNVGWKLNNNHQQWIHVGDYLHRGRYATNNDEMGISHIHYELATFGMTRGGKKRAAHVTNSL
NQALVSLHHAVTGKYCSGRDATKWFRTNMDQFALKCLEDELHKTYKVPQNKKILDFERKTKEDKTIQTGLSMEQLKAQHQ
EIADHQKAVQSLQDQADNLTNQKNDVQSQVATVTQNLKGIYEATTGHQAVDKDGNDLSPLEMANDITRAARSSQRDKQQA
EKDADAAQEKQTAAENQQKQLEQQLTQQQQQLQTLQNQISDAEEQIKQRKLQRIKAAQKEIDQNDLLDNNDQPITVTEAN
VTQMEQELDSWRQEERDNWETDKQDYQDELDNLNQEITTARTTKTELSTTNQQLTTQNQQLQNENTTVQNQINDYKNQLV
DTIAENAPEHKVGSSLLNPNETAQPVISDIGRKQHLRQTLKYLMDTAIKVLQKIKIEAINLINETTKVLITTPNTKPDHL
HSAYIDPNTIQASIHPFSHLKEEQLENNPVLKLKKAILIANTEQLQRTNQQLKNNINKQLSQDNDLQR
>SEQF1778_EEI65617.1 initiator RepB protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVEMIFLKYDIFFLGGRIMAVVQNKKMDKTISNLLSRQNYLVTQANDLARSFGNLTTFEHKVLDYCFSFVKAEDTSDHTY
TVQMIDIIRHLGLNSSGKNYQRVGEAFRALNTKTAIYLRTYKNGMNGILMTSLFDYIEIVEDGKIEFQFSKKVAPFVFEL
KQNYYSFKLSELATVRSKYTLTLLKLWNANSMGKLQKATIRGSITEWQSWFLGTDDDGKPRKWSAGRFRQRVLGVSLKEL
GELYPKTIFYLTTEKKGRKVVGYTLDITPVKTTFQI
>SEQF1778_EEI65618.1 hypothetical protein HMPREF0534_1051 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMEEKLYTINEIIKDAGIARSTFDKFAEANNLRPVKTEKRGKKLYSLKDKEFVVSHYVSGKGKEEKEKFTNHKAERHDEV
VDLLREQVQQLKRANEQLVHDNDILTDQLKVKDNQIAAAHQLTDQAQKLHLGLEKQVKALTGDADKPVVDGESSDINSSN
NQQKPTDEPMGTKKATRKSWWHIF
>SEQF1778_EEI65619.1 transcriptional regulator, ArsR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDYQKLASLLKVVAEPNRLQILEMLSCGEMCACDILKNFDFTQPTLSHHMKVLEKEELVHVTKKGKWHHYSLNQDTAALL
INGLSKTLSNTEDCICKITNKQC
>SEQF1778_EEI65620.1 arsenical-resistance protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSVYILGGATMKTSRNLSVMDRYMTLWVFLAMVIGILSGFIFPSLPKLINSWSVGTTSIPIAIGLILMLYPPLTKVNYGK
MGDVFSDKKELTFSLIQNWVVGPLLMFALAIIFLRNYPSYMIGLIMIGLARCIAMVIVWNELAHGNNDYAAGLVAINSIF
QIIFYSIYAYLFISILPKFFGIQTQTVNITMSEIAKTVFIYLGIPFILGISSRYLIIKSKGRGWFEDKYVPKISRITTWA
LLFTIVVMFSVKGARVVELPLDAVRVAVPLLLYFVLMFFITFWIAKKTGTSYSISATQSFTAASNNFELAVAVTVGIFGL
SSGEAFAAVIGPMVEVPVMILLVDVALWIKRKFY
>SEQF1778_EEI65621.1 putative protein ArsC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEGYGKALLKDQYECRSAGVEKHGLNPYAVEAMAEDGIDISQQKSKLI
>SEQF1778_EEI65622.1 hypothetical protein HMPREF0534_1055 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLCGDARDRCSVIPSQAQSVHWPLPDPAQAKGTPEQKMVVFRQVRDEIKQLVKGLI
>SEQF1778_EEI65623.1 transcriptional regulator, ArsR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDYQKLANLLKVVAEPNRLKILEMLSCGEMCACNILDHFDFTQPTLSHHMKVLEDKGLVIVSKKSKWHYYSLNPDTTALI
INGLTRTLSNTDNCMCKDAN
>SEQF1778_EEI65624.1 hypothetical protein HMPREF0534_1057 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGINMKTSKNLLFMDRYMTLWVFLAMALGILSGFISPSLPKLINSWSVGTTSIPIAIGLILMLYPPLTKVNYEKMGDVF
SDKVDCKI
>SEQF1778_EEI65625.1 Gram-positive signal peptide protein, YSIRK family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLSRNNWKEQVRQQEPNKQRFTIKKLTIGVASVLIGFTFMGMSASADAQTTSATGTQTGIASATDTTTPIAPSTTVPSYD
GTKVVDTPFYNNAHVR
>SEQF1778_EEI65626.1 putative translation elongation factor G [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIINIGILAHVDAGKTTLTESLLYASGAISEPGSVKKGTTRTDTMFLERQRGITIQAAVTSFQWHRCKVNIVDTPGHMD
FLAEVYRSLAVLDGAILVISAKDGVQAQTRILFHALRKMNIPTVIFINKIDQAGVDLQSVVQSVRDKLSADIIIKQTVSL
SPEIVLEENTDIEAWDAVIENNDKLLEKYIAGEPISREKLVREEQRRVQDASLFPVYYGSAKKGLGIQPLMDAVTGLFQP
IGEQGSAALCGSVFKVEYTDCGQRRVYLRLYSGTLRLRDTVALAGREKLKITEMRIPSKGEIVRTDTAYPGEIVILPSDS
VRLNDVLGDPTRLPRKRWREDPLPMLRTSIAPKTAAQRERLLDALTQLADTDPLLRCEVDSITHEIILSFLGRVQLEVVS
ALLSEKYKLETVVKEPTVIYMERPLKAASHTIHIEVPPNPFWASIGLSVTPLPLGSGVQYESRVSLGYLNQSFQNAVRDG
IRYGLEQGLFGWNVTDCKICFEYGLYYSPVSTPADFRSLAPIVLEQALKESGTQLLEPYLSFTLYAPREYLSRAYHDAPK
YCATIETVQVKKDEVVFTGEIPARCIQAYRTDLASYTNGQSVCLTELKGYQAAVGKPVIQPRRPNSRLDKVRYMFQKIM
>SEQF1778_EEI65627.1 site-specific recombinase, phage integrase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQLVLPIKDSNILHEVEDTLLHNFKAGRRNYTIFQVGKATLLRVSDLLALRRNEIFNNDGTIAKNAYIRDKKTGKPNTL
YLKPVKQDLKDYFQWLNQQNLHSDWLFPSTKHPDRHITEKQFYKIMAKTGDLLGINYLGTHTMRKTGAYRVYTQTHYNIG
LVMSLLNHSSEAMTLKYLGLDQVSREQMLDEVKFD
>SEQF1778_EEI65628.1 toxin-antitoxin system, toxin component, RelE family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEDLEFEFYTRPNGHTEFAEYLDSLDVKAKAKLLARINMVATYGLSAGIQHNWVKPLEKNLYEIRSRVSNNQQRGLYFHV
DGVHYVITHGFTKKTQKTPPREINHAKKLRDEYFANRKEQ
>SEQF1778_EEI65629.1 hypothetical protein HMPREF0534_1062, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNINFKDYLNEQLKDPAFKKEFENETTKLESAIALTKVRKESGLSQRDLATVSDVPQSTIARIESGANTSID
>SEQF1778_EEI65630.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKIGYARVSSKEQHLDRQLAALKDVDKLFTDKLSGANTNRPELQKMLAYIREGDIVMVTELDRLGRNNHDLTKIMNSIQ
NKGATLDVLNLPSMTGIADPNLRQLMTNLIIELYKYQAESERKRIIERQQQGIALAKRQGKYHGRKPQYAKDDPRLQHAF
KLYQAGMSDVDVARNTGIKRTTFIRYRKKFDVH
>SEQF1778_EEI65631.1 transcriptional regulator, TetR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNVVTDPEKVTRILKTATEIFGQQGFIKSKTDQIANQAQVSKGLLFHYFGNKQALYLDAFKYAYHRIYDHMDPKKWQNA
PGLAAMITTAVKYELKLQFKFPAEYRLMMQAYADLPHFPEPLRQQVQQETTAISAETDRIFREKIEQLPRREGLSVDDVF
GVVSALIAQQTAVTTRLIASGHYRKFEDLQSVVETMARQLLIVEHGFLPDES
>SEQF1778_EEI65632.1 hypothetical protein HMPREF0534_1046 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRHSNRNAGYLLRANLKQNLKFSLIWLVILIMMIASGAGKLEADFAGGASGSKEIVKMLQAPGMAAMFGAMPKVDTYNTA
IVFAGVMVVFMIILQALWVMPLMIRNTRGQEESGLLEMVRARNVGRTAAITAASLELLIDSAIMGILYFVSLAAVNMGGT
DLYGDFLFSLGMVIANLLFGAIALLFAQLTNNTGTANMLSYMVLTAAYLVRLVTDIQHQNLTWLSPIGWFEKANFYTDNN
VWALGLALLVSILLAASATMIARNRDLGAGIIAERTGRAKAAGWLRSIPALLWRTERRLFAGWLIGAVVFGGVMGSVLGG
VGDILKTNPLYRKILDVGQINAANQTMVLSFLGMYLGIFVALAVTAGVQVAFRLKRDDNLGYLSVIHAEKPTRTTISVSY
YCFGLLAGVFVLSAGLLALFFTGNTVLSHPLPLKYLGRLFVASVPAVISFIALGIALVGLWPRLSSLFWLYMGAGLIVQI
FRGLFDLPKHAGNFTPFGWIANVPVENVDQTWLIVMVVSAIVLFILGIAGYRRQDLSL
>SEQF1778_EEI65633.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKMTTAIIELDHLQKNFGKFAALKDVSFTLAPGQVLGFLGPNGAGKSTTIRVILGLLKKSGGSVTVFGKDAWRDDAAIH
PRIAYVPGDVYLWPNLSGGEIIDLLLRLNGRQHNQKTDELIKAFEFDPKKKARTYSKGNRQKVALIAALSQDADLYIFDE
PTSGLDPLNEQTFQQEVLKLKRAGKSVLLSSHILSEVERMCDSIVIIRDGSVIESGNLDQLRHLSRIKIEVTTATPMTAL
AKQAGVHDLTYRDSEHTKAVFTADRDALGTIMTTLAANTVVDMQSTPPTLEDLFLRYYGKQGETHAAQ
>SEQF1778_EEI65634.1 hypothetical protein HMPREF0534_1036, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
NKRLNNVIHGDQTGISKEVNWQGGGSFVYTELMKKNQGFLYDLQKATTIDELNAVYDRMKQGADLDFRVDLNKFENDSER
ASLPFEDQKKLLIKLLDKNQLYYNEANIDDADVRDLISDSDYRFNKSFYNGKESK
>SEQF1778_EEI65635.1 type III restriction enzyme, res subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MARKKTIPEEKIDLQLLNALNSTSLFSLKSSLEDNPLYITNNLKHKLRNYQMDAVHHLDAVLNMKDADQRNQLMFYMATG
SGKTDIMAAIILYMFRAWGYQCFLFTTNTTAVVDKTIDNLVNSASAKYLYNNPLVIDGDHVTIKKVDRYPVNLEKDTIYI
KLAGIQQLSNDYYAPRENGITKDSLARHKLVLLADEAHHFNVSTRSKKANREGLSWEHLLDEIRQLNHENKQLEFTATID
LHNPDIYHKYQNKIIAQYDLSHFINDGFSKKVYRLQANNSDENKMLNAVLLSQYRKRIAQNMSIPDFKPVILFKSNTIAE
SRAINETFLTMIDNLSAESLQQFIQNQNRSTQSEALSLAYKYWLNQDFGSTVTELKRDFSKFTTINANDSGSKNILDDES
VSRRLNSLESPDNPIRSVFAVAKLSEGWDVLNLFDIVRIGEKNIKPKDTNAEAQLIGRGARYYPFVYHGKKSYTRRFDDR
KPEIQLLERLYYHTINDPQYLENLRKSLDAIDLPVNEDTQYKVYTAKVKNSFKKTKAYKHGNIYYNKVIDVPESHYDSIQ
KYGFDPETTGPIDMVDAVSERRYDTGADKNDTTSTTLEVAARFSNPQDKALIRTAVSFNNFYRFDSLKKYCPTLTSMREF
LTSNEWLGNATIRVKVATGSPALTNEQRLTAVKKYLVRVQTAISNNFKRSIGTNEFMPIAVNEVIQDYQKRVGDQFGKSA
LIGPDSMQGKDWYVYDYAIVDTLEKHFIDHINSIMPELTHQYGQAYLLRIDERTTDFKLHDFGENIFHYEGYMPDFILYL
ENENFIYQIFLEPKGTPYIERDKWKEKLLERINPDNIKVLGEDEKVKIYGLKFYVEDDGKEDTHGLFQEMRDKNILQ
>SEQF1778_EEI65636.1 hypothetical protein HMPREF0534_1038 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKILTGSRGDEVHEHLYENGQRRVGHRILKKNTVTNNGEFHPVPGNIVLIPLKGTVKLTTPDQECTIKNGQLAILGPTDS
FYLTAIDDVEFVGVVDIK
>SEQF1778_EEI65637.1 hypothetical protein HMPREF0534_1039 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKTYYRNKAKGSETMSQWILIALFLLAHPLMMLFMHKGMHGGSGSMGCCGNNTQQNSNNTEKPRKKVN
>SEQF1778_EEI65638.1 hypothetical protein HMPREF0534_1040 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKILTGSRGDEVHEHLYKNGQRRVGHRILKKNTVTNK
>SEQF1778_EEI65639.1 hypothetical protein HMPREF0534_1041 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKTYYRNKAKGGETMSQWILVALCLLAHPLMMLFMHKGMHGGSGNNTQQNSNNTEKPRKKVN
>SEQF1778_EEI65640.1 copper-exporting ATPase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAWCSAKQKPKYKNLVGKSRAREFPHKELIFRLLTALLRTLIFRGSIIMANKEGHMNMKNMSAKNMENNESNMSHMDHDM
TETDHSQMNMNHGDMDMAGADMMMHGGSMMHMGNLKVKFWVSVVLAIPVLLLAPIMGLNVSILSFSSPLIVGIIIVLFDT
ALYFYGGMPFLKGAKAEIQNKSPEMMTLVTLGISVSYFYSLYAFIANNFLNPTNHIMDFSFELATLILIMLLGHWIEMNA
LMGAGNALQKMAALLPKTAHLVTDNGETKEVPVSDLKVGQAFQVRSGESIPADGVITAGESTVNEALVTGESAAVTKNVG
DKVIGGTTNNNGTLTVKISGTGDSSYLSQVMKMVQNAQQAKSKAEDKADLVAKYLFYAALGVGIIAFFAWLPQGLATAMT
IMVTVFVIACPHALGLAIPLVVSRSTTIGAQNGLLVRNRQAIEASQHVSHVLLDKTGTLTEGKFTVNALIPNDGIDETTL
LSRLAALEINSTHPLAQAIITEAQAKNIEVVAAEKSQNIPGVGISGNVDGTDYMIVNGNYLTKQGIRFDEAAADKWAAKG
NSVSFLLQGTQVQGMVAEGDTIKAGAKELISGLQRRGITPVMLTGDNPKAAEHVANLLGLTEFHAGLLPDDKQKIIADYQ
AKGNHVIMVGDGVNDAPSLAAADIGIAIGAGTDVAIDSADVVLVKSEPSDILHFLDLAKITNRKMVQNLWWGAGYNVVAI
PLAAGVLSFIGIILDPAVGAAVMAMSTIIVAINAMGLTGEKIKNV
>SEQF1778_EEI65641.1 copper transport repressor, CopY/TcrY family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKDPKNVTITDSEWMVMRAIWTMGHATSRELIDAMNELEGWSASTTKTLLHRLIQKQAVAQHGGSRPFTYKPVVGEKESM
AAAADDLFDHMCAMRAGSTIAGVIQSRELSRADIANLQAILAEKAKTAPEEVQCNCLPGDQTC
>SEQF1778_EEI65642.1 hypothetical protein HMPREF0534_1030 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILPAKKYENRDKVKKDAIRARVTKAEKTEIQKWAKGAGEDVSAFLLNGAQSRHYALKKMPINIEDSTDFGNYSSASFGL
LIDDLNDALSNIDSCLFENTKEKELYAQSIQWIIQRMKVSGEKYDSEHKND
>SEQF1778_EEI65643.1 hypothetical protein HMPREF0534_1031 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVLMTVNKVVIKNKADIHPEDTVKYMVTNNYVHERKSLYTNHKANIIKKGKGNYFNKNTGEKITKVKNSNLKIQNRQSLI
RSYVNLRYTIEKYVTGSIYDEMYTLTYEKAQTSFKDLSHDFVTFMKRFKRYVKKNYPKVNLSWIRINEPHKDTINGKPKW
HIHLIVIGLPFMKHHILEKLWGHGIVTITSYYKCNIHKVANYFTGFINKNDSDPESKKGRLKYYTSGTDLFSLSRGLHVP
KWIQGTDQEIRKKHPGKIINETTIEIRDTNDNSLFNRFAYRDIESNKTK
>SEQF1778_EEI65644.1 CobQ/CobB/MinD/ParA nucleotide binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPTVLYGNMKGGVGKTTNSVMTAYQLARKGYKTLVCDLDPQANATQLLRRTYGLQHGTDLKIEKTMMVALTEENIEPAIV
NIMDNLYLLPSSEDFKNYPDFLEMKFMPDKEKILAGNSTTLQSEMAKVKEKRIAYFSKQLAKVHDQYDFIIIDVPPTLSI
FTDSAIYATNFVIIVLQTQQRSLDGAETFFEYLQEMYNNYANIDFDIIGVLAVLLKNNAGLDSQILKDARVDFGDDMLFN
QIIRHMERLKRYDRTGIAEKGLTKYDMHDTRLHYIYTKLTDEIIARLKDKGALN
>SEQF1778_EEI65645.1 hypothetical protein HMPREF0534_1033 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKYQFDKGTKRRSKPRPKPIDKTDISKPKITYNPLTVTDRVENDLQHKKRSVGRPKTGRKSYKTVRLLTSTVLKINALE
NALGIKTQDATVDQAVDRVINSLTNDEMRAYKLWLEMFEKKEKE
>SEQF1778_EEI65646.1 hypothetical protein HMPREF0534_1034 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKHMSMYAYVAGTTNNDINDKGSIACQIDFLKQTNVDYDAYFIDTFTGVCQARFQLQKLLMVVKPGDMIDVMDVSNMTSN
VRELCCLLDEIEDLQITIFSDELEMGMSNSREPYYVAKMLCRADMVTMMQRSSNRKKMCQMTHQIDLHRDKSNKREITQQ
DYQIYNLLMKSDYRTTQQATGLSRSTLYRLKKRIQKR
>SEQF1778_EEI65647.1 putative DNA (cytosine-5-)-methyltransferase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQIDTRLMEQVKDVLQQFGTKYITKDGSLKRNAVISDLDKYDKDLMVALLANNLIKDEYTEQIADTTVFKLNHFIEMFEY
QEFWGNSFTKYANRIGLTSDDKFISDSDDVVLDFPYKDTVLKAGMTKDDVDKEVGADEPFLNETLAHSEISELFEPKVLV
NAKLYDTEGEHKATNFDDNDNLVIKGNNLIALHSIAKKYAGKIKLIYLDPPYNTGSDSFKYNDRFSHATWLTFMKSRLEI
AKTLMSDNGVIAIQLDDSEGPYLKVLTDSIFGRDNELFTQYVLVRYANKTLKSDMDYHKQIEQIHYYKKNSNAEVKPNKD
KVPYDYSKFCYEVKTTGKPSSSIMLGDKQVDIFTKDQVEFKKTSGNPEGLKEIWASGTILNGNSSGRFFRDYLSGRYKKD
GYGVVYKVYDIGDDGNDYRFFTGPKKAGATKGKYYQGVPLDVKNGKTSQKLLPIPGFIDMAGSFGNDRLEGGVELRNGKK
PEKLLKNIIK
>SEQF1778_EEI65648.1 hypothetical protein HMPREF0534_1027 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFDYTTATRDQKEEFLQDKILICLQATKQPMTNAQIREYLLKHVDELPANVTKLTTSKKGSVYSDFQIRVNMSITSLYKG
GLVDHPKRGVTELTQLGKSINLNTGRKHMHKLIVEGWQK
>SEQF1778_EEI65649.1 site-specific recombinase, phage integrase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQLVLPIKDSNILHEVQDTLLNNFRYGRRNYTIFQVGKATLLRVSDVLALRRNEIFNDDGTIKKNAYIRDKKTDKPNTL
YLKPVNQDLIDYLQWLNENKIQSDWLFPSIKHPDRHITEKQFYKIMAKTGDLLGINYLGTHTMRKTGAYRVYTQTNYNIG
LVMSLLNHSSEAMTLKYLGLDQVSREQMLDKVSFD
>SEQF1778_EEI65650.1 hypothetical protein HMPREF0534_1029, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDFNDNNFLNEINPLDLNSSIPATRDLKDSIHALAMLNGCTMQEYLEQLTSTEIHHYDIQKLSDYRKLKFYFDARYLKK
>SEQF1778_EEI65651.1 pseudouridine synthase, RluA family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
NKALMLNPSVLKIVKPFFVSFSMLMEEIKMENTWIYRGTEPIKIKKYLQSLGMGHRLFNDLKNGEGEFLVDHRKVRPTTQ
ILPNQPLTIKAQPELADDTVESSNEPLNVVYEDDNWLVVDKPAGVTSIPGPTVQNDTVLNRVKGYLIANNSADLRPHLIT
RLDRFTGGLLLIAKHHIASSMISQQVQQHQMLKEYTALVEGQVMDEHGEINKPIGRKDGQAARVIDENGQRALTEYWVEE
RGAKWTRVRVRLHTGRTHQIRVHFAAIGHSLIGDHLYGGDTSKYDHQLLHASKISFNDPFTLKQMTFTSELPAA
>SEQF1778_EEI65652.1 deoxynucleoside kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIAIAGTIGAGKTSLTKLLADHLNSQAFYESVDDNKILPLFYKDPKKYGFLLQIYFLNKRLDEIKDSYSNDLNVLDRSIF
EDALLFKLNADMGRATETESNIYSSLLSNMMEELPEQPHQKAPNLLITIRVSFETMLERIKKRGRSFEQIANDSSLYSYY
KNLNERYVQWYEDYNESPKMVIDGDKYDFVEDPAAAKKVLAMIDEKLIELNLK
>SEQF1778_EEI65653.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADESKSTGHMERTLQTRHLSMIALGGTIGTGLFIASGSAISTAGPGGALVAYGIMGIMVYFLMTSLGEMATYMPLTGSF
SAYSTKFVDPALGFALGWNYWFNWAITIPVDVTTAGIVMNYWLPNVPGWIFSVTVMALIFLINYLSVRSYGETEFWLALI
KVVTVIVFLIVGVAIIFGIMGGKPVGLSNFHYKQAPFVGGVPAIISVFLVAGFSFQGTELVGITAGEAATPEKSVSKAIH
STFWRILLFYIFAIFVIACILPYTDKNLLNQDVSNITMSPFTIVFKRAGLAFAASAMNAVILTAVISAANSGLYASTRML
YSQAREGYAWRIFGYVNRHGIPIYALLGTMVVSLAAYATQFIGPKAYNYLIGASGLCGFIAWLGIAISHYRFRKAFLKQG
HTLSELKYHATGFPFGPVFALTLCIVVICGQNIDAFVKMDWQNILITYMGIPLFLILFFYYKIRYKTHLIPLDKVDLSRR
TKGESYEPEDD
>SEQF1778_EEI65654.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVASLFYFPENRRKMSEIIIESAKTNNNLGAIVKLLDNENLTQAVGLLLPLQREKRVQAIKMFVRQNHVMVVKLNEDVVG
MIVLSAWYGDEGKRIAHHYELGYLLQQNQWNKGIMTTALQKFISILPSKITIHAECKQSNYRSQRVLVKCGFTYDKDDLW
QRIIK
>SEQF1778_EEI65655.1 PAP2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFIERDDHRWWRFALSGGFFIALMLLIMFNSSVLTMIDAVLQSLFTSQRLEGIGWFHALMSLLSFLAKPVLDLVWVFIIA
GVLWLKGYRISALWSLGTIFGGDVLGTIIKHIVKRVRPAQHLAADDGYSFPSGHTLGFFLVVAILFLIVIPLIQKASVRT
ILQILLIFAVFFLAVSRVYLYAHWPFDTIGAMLLAFAWLQVAEWLYVAWAPRLQRIPFFRSIEI
>SEQF1778_EEI65656.1 hypothetical protein HMPREF0534_1008 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNWGNLLLQFFLCYISTVCFGILLNIPKRAYHTAGMIGGGVWVVYWIMYYCSGIGLAFSNLVAAILISVLSQAAARRKRM
PIIVFNVPALVPFVPGGQAYKMVRNFAIGNYHLVNVYFYQVVVIVGAITLGFGLGELLNRVLNYLHKYLIKKSRWNF
>SEQF1778_EEI65657.1 hypothetical protein HMPREF0534_1009 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTKRRQALALKTCLLAGRLLIENGSNMERVNDTLSRMAKSAGLHGFQAFTTVTGIVVGTINEPDAQVITIRHRKNNLSK
IADVNEVSRELARRKIDVPQAFAKLKKIDRQKMSKWQNWYESFAAAILSGALMIVFTGNVSDSWAGFLAGGVGYGAFSYL
LRKFKIQYLGEFCSSLIIGILAVIFVKMHLANNINDIIIGAVMPLVPGVPLTNAARDLVSGNLISGPTRGIEAILTAVSI
GSAIVIVLHFN
>SEQF1778_EEI65658.1 cold-shock DNA-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEQGTVKWFNDDKGYGFITRESGDDVFVHFSAIQGDGFKSLSEGQHVTFEVEEGERGLQAANVVKD
>SEQF1778_EEI65659.1 iron dependent repressor DNA binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTPMKEDYLKIIFELGGSHKKVSNKEISLGLGIAAGSVTEMISKLADEGLVVHEPYAGISLTEKGQKYAAELVRKHRLWE
TFLVDKLHYNFADVHSEAEILEHQTSDRLATALDAFLQHPDHCPHGGVIPSANGKFPDVTHRLLADADDGEKVELERFLD
NHELLTYLEELGLRPQEQVTVIRHEPFEGPIVIQKEDNDQEINVSYKASHNIFIEPDTAQENKG
>SEQF1778_EEI65660.1 cation diffusion facilitator family transporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDEKVTGKRFLAVTLLNVLITIVEIFGGILSGSLALLSDAFHNLGDSLSIVLGYFAQHIGGQPENQQRTYGYRRAEILSA
LTNSIFLIVISVFLIIEAIKRLEHPQHINGGIMLTVAVIGLLANFISAALLHAGSEDSLNVKATYLHILSDALSSVAVII
GGIILTFVNVPWLDPALTIGVALYIAYEAWPIINQTIKILMQSSPDLDYNSIENDLKQIDGVTAVHHVHAWMMDEHRIIF
SAHLNCDDLPLRQVERIYSQVEKILHEKYGICHVTIQAEYHRGKDEKLFNTPVDEKNVINNDFKED
>SEQF1778_EEI65661.1 membrane protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIKVKKHQKQTMEEKLNTLRAGVLGSNDGILTVVGVLVSVAAATSDRFTIFIAGLSDLLACAFSMASGEYASVSTQKDT
EKAAVAKEEQLLKDDYEGELAAVKDYYVNKGVTPETSIKIAKDLLNKKPLETVVRIKYDVELGHYLNPWDAAFSSLFSAA
AGGLIPLMAMTFAPEAYKWYAVILAVAFTSALTGYISSKLGNGLVKIAVIRNIIIGLITITIHYGVGKLF
>SEQF1778_EEI65662.1 membrane protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKKKMSLAQKVNVLRASVMGANDGIISIAGIVIGVAAATSNARSILIAGLSGTLAGMISMCMGEYVSVSTQKDSQKMAL
ISEKQRLQNQYQHEFDYVQKKYEAQDIDSQLAKQATKELMEKDALGTAVQERYGFNPNEFTSPYAAAIASFISFPTGSIL
PMVAVTVSPANVRILATAIAVLIALLITGYFAAVLGKSNRIKSMIRNAAAGLLTMGVTYLIGQLFAR
>SEQF1778_EEI65663.1 universal stress family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFEIKPKKFKKILVGVDDAPDARAAFSYAVDKAKRDGSELGIVSILETDRVNVYQILDKDYVHSSEDELRQRVNEYVQAA
IDYGVDPEKITAIVDRGERPAERICNHVIPAFQPDLLVVGSIGKKGNRKAVGSQASYMARHAGTSVFVIRTNTVQAYE
>SEQF1778_EEI65664.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEFHNVQKYYGKFHALKDINLTIDDGETVVLIGPSGSGKSSLIRTVNGLDPIRDGQLIVNGFDLADKKTNVNLIRKDVG
MVFQHFNLYNNKSVIENIMLAPRIVLKRPEEENRELAMKLLDKVGLANKAESMPAQLSGGQKQRIAIARSLAMKPKCLLF
DEPTSALDPEMIDDVLDVMKDIAKNSNMTMLVVTHEMGFARAVADRVIFMADGRILEDDSTEKFFGDQPSTERAREFMSK
ISGH
>SEQF1778_EEI65665.1 ABC transporter, substrate-binding protein, family 3 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKYWRLISLSALLFVALLTLSACGTSIAKKDVLTEDMRSQRIIWGVKADTRLFGLENIRTGKLEGFEIDLATAITKKIL
GPQGKPIFVPVTSGTRVPLLKNGNIDAIMATMTITPEREKQVDFTHSYFDAGQSLLVKKGSPIKNISDLNRRGAIILGVS
GSNSVKNVAKFAPKARALQLSDYAQAMTALKSKQGDALTTDNGILYGMAAENPGYEVVGGNFTKEPYGIAVNKNQTRFRN
KLNWALREVEKDGTYNRLLLKWFGNVKGFNYQEMKR
>SEQF1778_EEI65666.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNLIINEWHPLLTGLWNTILCSLIALIGSLIIGTFFALLEISQHRVLKIIGHVYVEVFRNIPLLVITMAFFLIIPMYVV
KINGFTAGTIGLTLYTSAFIAETVRAGINSIDPGQMEGALANGLTYGQAMRYIVLPQAFRVVIPPLGNQFINLVKNSSVL
AFVAGFDLMYQGNLIANDTLATMPTYFIVGIMYLIITLPLSYYMRHLEKKLA
>SEQF1778_EEI65667.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQNFIDAYSWINIRFLLEGLWITIEVSVISIIISFILGTFLGIIRYANIKYLSAIVGFIIDIIRNLPLLLIIFFTYFGLP
NIGIKPEIIPAAIMALSIFESAMVAEIVRSGINSIDYGQTEGALANGLTKWQALRIIVLPQAIKNMMPALVSQFISLVKD
TSLATIIVLPELMYHAQIIYGQNTNYIIPMFVALAVLYFIVCYSLSLVARYLHKHIA
>SEQF1778_EEI65668.1 CAAX amino terminal protease family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTGNDYLRIWYRVQIGATLVILAMMMIRNYEFNRQTVALALLIMVIILGIGLVFELLPNVSLLVKKLNAWLQVIAQPIIL
VFAWDVMVREIIVLLHLPSRGVVTMMIFYYFIMFAPFASVIGEFMHWSIERLIFIAWLAQVVFTPLIALPTDLVDNHFLL
LALSTGAVGAVAFFILTTTVMRTWHLSWPGLKPHWSGDFNWGIFAGLVVVDIIFMALNTGEMPRLHRANWDFTLSAFEAA
VMEETLFRFAILGILFYAWRNVKQRLPLALATSSILFGIVHLTNYGPQEWSMTVLQAVSAAGIGLFFATVYVYTGQLWLA
MVMHFLLDWTAFIASDSTLMTGKVTVQNWIGTGIELVVFIGIAVWMMFGQRRQVMERHVNRLTGEHQRFDFMIQY
>SEQF1778_EEI65669.1 hypothetical protein HMPREF0534_1021 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKIYRRKGIMTKLKIKNNEVAFYAMGGLGEIGKNMYCVQFQDEIIVIDCGVLFPEDELLGVDYVIQNYDYLIENKDKIK
GIFITHGHEDHIGGLPFFLQKVNAPIYAGPFAMSLIKGKLEEKHLLRNAELHEINEFDEVHFKKLWVSFFRTTHSIPDTL
GVAVHTPQGTIVQTGDFKFDLTPVGNLPGPNLQQMAKLGDDGVLLLTSDSTNAERPEFTKSERWVDIHIRRIFERIKGRI
IFASFASNVYRLREASDAAIAQGRKIAVFGRSMENAITAGQELGYLNIPKDSLIDQNEINNYPPEKVLIMCTGSQGEPMA
ALSRIANGTHRQITIQPEDTVVFSSNPIPGNTTSVNALINKLEESGANVIHGYVNNIHTSGHGGQVDEEFMLRLMKPKFF
APVHGEYRMQKIHTKLAEMTGVPKENSFVLANGDVLALTKDSCRVADHIDSVSDVYIDGRDAGDTVGNPEIRERRLLSEE
GVVTAIAVVDLKDYQIVAGPDIVSRGFVYMHESQELIKAANHEVFWAILNTFKNHKHVDQRVLNRTIISRLQKLLYDRTG
RRPVIIPMVTILNGNNRSENQHYRRPNNKNNQTHKNERQNNHSHRNSQQHSKKKNSKEKQPVATGNTK
>SEQF1778_EEI65670.1 hypothetical protein HMPREF0534_1022 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATTGLSYSELSDDAKEVALNSFINFYVDQYHRGSLEILSSQVSNELMATINQILRDNAFMGHQELVNVSTRLSKPAYQK
ILTALTNVKFHEDGEPVVDWMKAWEQKEEQLPEED
>SEQF1778_EEI65671.1 transcriptional regulator, MerR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDPLSEKIRKMIASKQLKISMSEVARVTGVSTSQLRYWEKKGYIKSEQDEQNKNHYFSFPTIFQVLTIKVFLDQGFTLAM
AVKKERKRRELHKIFTCFITDGIKEVEQTGEDSGEVKLGALAEDSTKEVYAVIDGEKTSLRIRDRKEN
>SEQF1778_EEI65672.1 drug resistance MFS transporter, drug:H+ antiporter-2 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNQEQQPVDINGQTYNRFLMIFVLLIGAFCTILNQTILSTAFPALMDAFNISTATVQWLTTGFLMVNGIMIPVSAYLTSR
FNTKSLFIIAMSTFEVGTILAWIAPSFAVLLAGRLIQAVGVGINMPLMQNIMLTVYPPEKRGAAMGVNGLVIGLAPAIGP
ALSGWVIDSYSWRWLFGMIAPITALVIIVSFFAVKNVIPNKKPHLDWLSVVISTLGFGSMLYGFSSVGDKGWTDPVVLST
IIIGVILVGILIMRQNKLDDPFLEFKVFESKEFSLATILSSIVMMAMVGVEFVIPLYLQIIHGMSAFHSGLTLLFGALFM
GIMSPITGNLFDRHGAKRLAFTGMFILTVGTIPFAFITRDTPTIYIVFLYAVRMFGISMVMMPVTTAGMNSLPYNLISHG
TAVNNTIRQVATSVGTAIMISVLTNITNSNRPAHSLLTQSPLQYKAKMFDATLMGYHAAFWFAIAFSLIGLFLTFFVTSG
NGIHLRLDSEDIAEPTDKGGMK
>SEQF1778_EEI65673.1 hypothetical protein HMPREF0534_1025 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVIILTFLGALAFFACMMFIRQKSLRIILATLTGIIFVGSTLLMTLNYSHHFGMQKVTTTTTKRIYSASNSSMPLAIYQP
VGKSGRDDVYIYNTKVKQKTPYHTQANEYTTSRIKWTNGSTPQLVTTETRWQYRNNFYKVLYAWSGMNNALVKRTNVLEY
PRMYVKLTTSQADKLARVAKSATGAKLQAQAAEQGRAFVTSKVQAAMAKNPNMTAKQIQEVSAQAEQEFQAQSIQQILKQ
VK
>SEQF1778_EEI65674.1 Rib/alpha-like repeat protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
HTQADTNTPEAGKVTVNKGETPSAQSAISNNKELPEGTQYDWKEPIDTTTPGDKTGTVVVTYPDGSSEEVPGVTVHVNSD
TDLINAKAGNTPDVPRGVE
>SEQF1778_EEI65675.1 hypothetical protein HMPREF0534_0994, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKYQIEIPDSAFKKTDFSTNEELSLSVNHKQINIRPINVSDQLPKINIFWYVIPSIILAAIFLAFFSARKINTVPITG
DDYSIANGALILGVCSGILSFLIT
>SEQF1778_EEI65676.1 DNA-directed RNA polymerase, beta' subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDVNKFESMQIGLASPDKIRSWSYGEVKKPETINYRTLKPEKQGLFDERIFGPTKDYECACGKYKRIRYKGRVCDRCGV
EVTSAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDMSPRSLEEVIYFASYVVLDPGDTPLEKKQLLTEAEYRDKKA
EYGDRFKAEMGAAAIQKLLADVDLEKEAAELKEELKEATGQKRTRAIRRLDILEAFIKSGNKPEWMVMDVIPVMPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLKLQAPGIIVQNEKRMLQEAVDALIDNGRRGRPVAGPGNRPLKSLSHLL
KGKQGRFRQNLLGKRVDYSGRSVIDVGPSLKLNQMGLPVPMALELFKPFIMHELVKRGLSANVKAAKRKIDRSDDDVFDV
LEDVIKEHPVLLNRAPTLHRLGIQAFEPILVSGKSMRLHPLVCSAYNADFDGDQMAIHVPLSDEAQAEARLLMLAAHHIL
SPRDGEPIVSPSQDMVIGNYYMTTEDKGREGEGMIFKDTDEAELAYRNDYVSLQTRVGVQVSAFPEKPFTDEQRGKIMVT
TVGKLLFNRIMPKDFAYINEPTDANIQNGVDDRFFLEPGQDIHEYLENAPLVPPFKKGFLSDLIAEVYKRYKVTKTSQFL
DRIKDLGYYESTISGLTTAMSDIHDLPEKPEILDKAQKQVALITKQFRRGLITDDERYERVIGAWNDAKDEVQNKLIEHM
DIHNPINMMSDSGARGNISNFTQLAGMRGLMASPNGKIMELPVKSNFYEGLSVLEMFISSHGARKGMTDTALKTANSGYL
TRRLVDVAQDVVVREKDCGTDRGLEVTAITNGNEMIEPLYDRIMGRYTMKSVFDPKTGEKIVGKNVLIDEEMAQKIVDAG
VKKVTIRSAFTCNTEHGVCERCYGRNAATGDRVEAGEAVGTVAAQSIGEPGTQLTLRNFHTGGVAGNDDITQGLPRIQEI
VEARNPKGRATITEVTGEVVSIEENPAERTKDITIKGETDTRTYTLPITARMKVAEGDFIHRGAPLNEGSIDPKELIQVR
DVLSTETYLLSQVQGVYRMQGIDLLDKHVEIMIRQMMRKVRVMDPGDTDLLPGQLMDISQFRDANKDTLVAGNIPATARP
VILGITKAALETNSFLSAASFQETTRVLTDAAIRGKNDPLVGLKENVIIGKIIPAGTGMSAYRNIKPKEVSVAAYSIKDI
EAKLKEEDKQN
>SEQF1778_EEI65677.1 DNA-directed RNA polymerase, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAGHLVKYGKHRTRRSYSRIKEVLELPNLIEIQTDSYNWFMEKGLREMFDDIMPIDDFQGKLSLEFVDYQLLEPKYTVDE
AREHDANYSAPLHVTLRLTNHETGEIKSQDVFFGDFPLMTDQGTFIINGAERVIVSQLVRSPGVYYSEENDKNGRPNYGA
TFIPNRGAWLEYETDAKNVSYVRIDRTRKLPMTELIRALGFGSDDEIIDMFGGDSETLSLTLDKDVHKNAEDSRVEEALK
DIYERLRPGEPKTADSARSLLTARFFDPKRYDMAPVGRYKTNKKLMLKYRLLGQTLAETLADPDTGEVLAQKGDTVTKEL
LNKLEPYLDRDDFKTITYTPSDEAVVTEPVKLQKILVYSKTDPDRVVPIIGNGHIPLEYKHIEPADILASLNYFFNLQEG
IGSTDDIDHLGNRRIRSVGELLQNQFRIGLARMERVVRERMSIQDPDTVTPQQLINIRPVVASIKEFFGSSQLSQFMDQT
NPLGELTHKRRLSALGPGGLTRDRAGYEVRDVHYTHYGRMCPIETPEGPNIGLINSLSSYARVNKYGFIETPYRRVSWKD
HKVTDKIDYLTADEEDNFIIAQANTPLNDDGSFVDDQVMARDKDDYIETSVENIDYMDVSPKQVVSVASACIPFLENDDS
NRALMGANMQRQAVPLINPHAPLVSTGIDYKAAHDSGVAMIAKKPGTVEYVDAREVRVREEDGTLDTYKLMKFRRSNGGK
NYNQRPIVKVGEHVDADDVLADGPSMEQGELALGQNPLIAFMTWQGYNFEDAIAINERLVKDDVYTSIHIESYESEARET
KLGPEEMTREIPNVGDDALKDLDENGIVRVGAEVHDGDILVGKVTPKGMTELSAEERLLHAIFGEKSREVRDTSLRVPHG
GGGIIQDVKVFTRENGDELSPGVNTMVRVYIAQKRKIQVGDKMSGRHGNKGTVSIVVPEEDMPYMPDGTPIDIMLSPMGV
PSRMNIGQLLELHLGMAARRLGIHMATPVFDGASDKDVWDAVRESGFPEDGKTILYDGRTGEPFENRIAVGSMHYLKLAH
MVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTYKSDDTVGRVRTYDAIINGQPIPKP
GVPESFRVLVKELQALGLDMKVLDGNNKEIQLKNMDEDDDEVVNVDALAKYAEEHKTDDKKNEEENKSEATSTTTDDKTN
QN
>SEQF1778_EEI65678.1 hypothetical protein HMPREF0534_0997 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQFDYNLPKIRLLGKKNPKTVQRLSLAFMQNLMDNRSPGSNELTITYYLSIQVLLNFVNNYFYIF
>SEQF1778_EEI65679.1 transcriptional regulator, TetR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRAEQLEKTRQAILKTATKLFLQKGFGETSTRDIAKQIGITQPALYHHFSDKEVLYLDVMTNLCGKVRQDINKVMRKHD
LSPNEQLWQITKALKKHHPLSIYDQYNQAMRLLSKSAQQKLNMIFTMDYLEPIAAFFRQPDVGLRPDILPKEAAELFIAG
LTPIFGTSQLIGGHSITPEQRDQLILDCIINGLSNWGGKN
>SEQF1778_EEI65680.1 ATPase family associated with various cellular activities (AAA) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNMFTPSAKHVLAIAQEQAKYFKHQAVGTEHLLLALSMDKDGIANKIFEQFSITNDDIREEIERLIGYGTMENLGASDY
LPYSPKAKQVLSLAGKEAQQMHALKIGTEHLLLALIADESVLSSRILYSLDVVPRQMRKVILRRLGIADSQQRNPNRQSS
RRRIQQTGTPTLDKLARDMTELARNGQLDPVIGRNKEVKRVEQILSRRTKNNPVLIGEPGVGKTAIAEGLAQRMVDGKVP
AELANKRLMMLDMGSLVAGTKYRGEFEDRLKKVIDEIQNDGHVILFIDELHTLIGAGGAEGAIDASNILKPALARGELQT
IGATTLDEYQKYIESDAALERRFATVQVDEPTTDQTLQILRGLRPKYEEHHHAKITDEALEEAVKLSDRYISDRFLPDKA
IDLIDESAAMVRIDAEDKKNHQPSLESQLEDLRTQKEEAIDNQDFDRAATLRQQELALKDKIDRKKQRTQQKDSHNYKLK
VTGENIAQVVAEWTGVPLTQLKKSESERLVNLEKVLHQRVIGQDEAVTVVAKAIRRARSGLKDPSRPIGSFMFLGPTGVG
KTELAKALAAAMFGSEDNMIRIDMSEYMEKYSTSRLIGAAPGYVGYDEGGQLTEKVRQHPYSVVLLDEAEKAHPDVFNLL
LQVLDDGYLTDAKGRRVDFRNTIIIMTSNLGATQLQDEKEVGFGAKDMSQDYNAMAAAIKQQMRLYFRPEFLNRIDETII
FHSLQKKELHQIVKLMVNDLNKRVSEQGINLKVTPAAIDVIAKLGYNPAYGARPLRRALQDHVEDDLSTGLLSGEINVGD
DVTVGAHHGKITFKVKKPDEDKAVELKLNR
>SEQF1778_EEI65681.1 transcriptional repressor of CtsR [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVKISQKSRGDIMENKSISDIIEAYLKEILGDSAQVEIRRSEIANQFDVVPSQINYVIKTRFTIQNGYLVKSKRGGGGYI
RIERVNLLDDVNVLNSLIQAIGDSVRERDAFDIVRTLYEEDVITRREGDLMLVALSKQALAVNDSKIEDQLRARILVSFL
NRLRYES
>SEQF1778_EEI65682.1 GroES-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKAAVINDPVDGFVTVKDVQLRDLKPGEALVDMEYCGLCHTDLHVAAGDFGKKPGRIIGHEGVGRVSKVAPGVTSLKVGD
RVSIAWFFKGCGHCEYCLTGRETLCRNVLNAGYTADGAMAEQCIVPADYAVKVPEGLDPVEATSLTCAGVTMYKALKVAD
IKPGQWVSIVGAGGLGNLGIQFAHNVFGAHVIAVDGNPDKLEAAKKNGAEILINRHDGDVDKQIQEKVGGVHAAVVTAVS
PSAFDQAVDSLRPDGKLVAVALPQGDMKLNIAKTVLDGIIVAGSLVGTRQDLAECFQFGAEGKVHPIVKTRKLSEINDMI
QELKDNKVVGRNVVDFVHNDND
>SEQF1778_EEI65683.1 hypothetical protein HMPREF0534_1002 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MERQLLLISTPPKNLEEDKLLSAIVIGAPYGSTKEQAAAIYANTFAQLGFVTLAFDQVYMGESAGEPRHVASPDLYAESF
SAAVDYPGTKAKHVNREQISVIGISRGAGFALSAAAVDTRIKSVVTISMYDMTDIREMANLAPEQLFQLKDQLSKQRWDD
FENGQPDYHPSFPEEPYDSIDDLPNHDELTNEWLRFYALKRGFHPNTRGTATTTSNLAMLEFSALDYIKEISPRPILFIY
GDNAHSRSYSERAYYLANQPKQRLIVKNCEHIDFYDNMEKIPVDQIAKFIKDSFNA
>SEQF1778_EEI65684.1 hypothetical protein HMPREF0534_0987 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSSDFIQLRFPLKYRYVEKRKRHRLTLDAFNTLERIYIIMQNNYNINQFTLAMTTDYQPEKNHPAYYIHQLVENLAVSK
PNVMGRPREYDPRMLLKLVLLAYSYGIVSCRKIERFARENIVAMWLTQEQRPTYRTIARFIVSKELTEMIQASFKDFHDY
LQKAGLIDEASFIDGTKILANANKYSFVWKKRTIKYSDLNVVKAQKLISEMREEAKVDASLDDFQIDELDTTIALLEQRI
EELNKRVEETAKVSPNPAKQERRQAKKYFRALDHCRQKNLKYKAQVATAGERNSYSKTDHDETFMRLKEDPMRNGQTKPA
YNLQIMTNSQFVLGYDLMQNPTDTRTLIPFLKHLDQNGVLGKEIVADAGYGPEHNYRYIEDELPDCTALIPYSTMLRENS
RKWKSEIVK
>SEQF1778_EEI65685.1 hypothetical protein HMPREF0534_0988 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNWEYHAKDDYYINPIGVRFNFKRYAYRNDKYGFHRDFKVYQAEKFDENHQINSKALTPHGNTKYIMVNPQWEYFKAKTR
KSLSSSNTYSRRKYDVETVFGNLKAYLGFTRFTVRGLKKVKKQIGIALMALNMKKLAGRSSNFLGEKSKKKDPFENFFNF
RMDLLNLGTYVTAPFDGLEITMSIISYCHRFS
>SEQF1778_EEI65686.1 translation elongation factor G [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANKREYPLAKTRNIGIMAHIDAGKTTATERILYYTGKIHKIGETHDGASQMDWMDEEKERGITITSAATTAVWKDNRIN
IIDTPGHVDFTVEVERALRVLDGAVTVLDAQAGVEPQTETVWRQADQFNVPRIVFANKMDKIGANFDYSVQTIKDRLNVT
PLPIQMPIGAEDDFIGLVDLVKMVAYVYDEDKLGTNWDTVEIPDDMKEEAQKRHDEMVETLADIDDNLMEKYLEGEEISV
DEIKAAIRKGTLEEQIFPVLAGSAYKDKGIQMMLDAVIDYLPSPLDVKPFVAHDADGNEIELTAGDDKPFAALAFKIATD
PFVGRLTFLRVYTGSLQSGSYVLNATKDKRERIGRLLQMHSNQQQEIPEVFSGDIAAAIGLKNTTTGDSLTDPDHPLQLE
SMDFPEPVIQVSVEPKSKADQDKMDKGLQKLAEEDPTFKAETNPETGETLIAGMGELHLDIIVERLRREFHAEVTVGKPQ
VSYREAFTKTASAQGKFVRQSGGKGQYGDVWIEFTPLKEGEGFEFEDAIVGGVVPREFIPAVEQGLKEAMQNGVLAGYPL
VDMHAKLYDGSYHEVDSSEAAFKVAASLALKNAAKKADPVILEPIMKVDIVVPQDNMGDVMGQVTARRGTIDGMEERGNA
QLIHSFVPLSEMFGYATALRSATQGRGTFTMTFDHYSAVPKSVQEDIIKKNGGNN
>SEQF1778_EEI65687.1 ribosomal protein S7 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPRKGHVQKREILPDPMYNSKLVTSLIDHLMIDGKRGTATKILYAAFDEIKNETGNDPVEVFQQAMENVMPVLEVKARRV
GGSNYQVPIEVRPDRRTTLGLRWIVQYARLRGEHTMVERLAREIIDASNNTGASVKKREDTHRMAEANRAFAHYRW
>SEQF1778_EEI65688.1 ribosomal protein S12 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPTINQLVRKGRKSHKGKSKSPALGYVYNTFKKEEIKTPSPQKRGVATRVGTMTPKKPNSALRKYARVRLSNLIEVTAYI
PGIGHNLQEHSVVLIRGGRVKDLPGVRYHIIRGTLDTAGVEGRMQSRSKYGAKKPKDKK
>SEQF1778_EEI65689.1 bacterial peptidase A24, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLVLLFLFGASVASFITSCCYRLGNNCSLIIPQRSYCDNCHSILRWWHLIPIFSFIILRGQCFYCKQKISLYLPVIEFLS
GIAFITFISYEPIHDLIILLFLTSLIFLTSTDFFSHVIYSYSLLGLFPISLLSIPQNYFYNLIFACILAVSLLLFTIFTK
TLGIGDIEFLFVICLIWGWYQTLIIIQWSSLIMLFIFLFTRKKKLPFIPALAFTTILCLLIQGC
>SEQF1778_EEI65690.1 hypothetical protein HMPREF0534_0993, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
LGKGPSKDFHWRSLPTITIACGLIIAFSLSAIFWLFGQMFKDARFDIYTATAFVFVIIAAINYIMINLALTLSSGVITNL
LTIMIIGGMLFSMLTNSKRDWWRYNFSFLGTAKNSTSLQFNITLIFTGLLMIALVDYLFVNIQRRYHGYKIQVLRWLLIM
LAICIASIGLFPNNPEFHVLHDRISMWLVYIMLILIVVIRWVLPEVTKQFLVISYTIGAAMSIEYIVFKLTDYLSLTAFE
LFEFGLAFSWLLLLLQNIENLAQFGQNLFVVKLKPVKDDTN
>SEQF1778_EEI65691.1 hypothetical protein HMPREF0534_0943 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLSVVAIVGIFSALIAILLASSRLIYAFGRDGLLPKSLGQIDDKHVPNHALWMITFLAMILGSVFPFTFLATLVSAGTLV
AFIFVSLGIYALRPREGVDLPEAQFKMPLYPVLPAISAIFSAVIFWGLNTDAKILMIGWFVIGLLIYFIYGIRHSIINKE
NH
>SEQF1778_EEI65692.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIQLFQTKVTRMKKLIKRLFLKQNPRVYEEKDAQLTPSLRTRDLIGLGTGMVVGTAIFTLPGIVAAEHTGPAVPLAFIV
AAIGAGLSALAYAETSSVLPFAGSAFSWINVLFGEFFGWIAGWALLAEYFISVAFVASGWSAYMQGFLGSFGIKLPHALT
GGFDPHTGSYIDILAAFAILIVGVLISRGVHQVSRIENIIVSVKLLVILMFIVVGVTAIHPQNYVPFLPAHQPGTTFGGW
QGILAGTAQIFIAYVGFDAIAANTAETINPQKTMPRGLIGTLLLGTGFFIAVSLVLVGMFKYSRYANNAEPAA
>SEQF1778_EEI65693.1 tRNA (guanine-N(1)-)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRIDILSLFPNMFQATMGESIIGKAQDNGFIDINVTDFRQYTTDKHNHVDDAPFGGGAGMLLQAQPIFDAMDAIHEQTKD
QYSKGRVILMDPAGRKFDQAYAKELAQEDHLTFICGHYEGYDERIRNLVTDEASLGDYVLTGGELAAMVMIDATVRFVPG
VLGNMSSPMGDSFSNGLLEYPQYTRPADFRGMKVPEVLTSGNHQKIKEWRMRESLRRTLHRRPDLLKTAKLSREQQLMLE
DIKLDEDPTVPD
>SEQF1778_EEI65694.1 16S rRNA processing protein RimM [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEYYNVGKIVNTHGVRGEVRVLATTDFIDERFAKGNTLYLQQSGEPLPLTIESTRQHKGFVLVKFVGYDNINDVEQFRDH
ELMVSADDQQPLDDGQYYYHQIIGLDVETTDGRHLGKIKEILSPGANDVWVVERPEKRDLLLPVIDDVVKNVDLDKNLVT
VELMEGLE
>SEQF1778_EEI65695.1 hypothetical protein HMPREF0534_0947 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAETDIESLIRSLVIPLLKQPQALSITQKDDGRYHRYIIDVAPNDVGRLIGRQGHVAAALRTVVEGTQSRRANSKRVRLL
INDHRH
>SEQF1778_EEI65696.1 ribosomal protein S16 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSVKIRLKRMGSKKRPFYRIVVADSRAPRDGRFITSVGTYNPLTTPKEVKFDEDAVMEWLQKGAQPSDTVRNMLQAAGVM
KKYHETKYAKK
>SEQF1778_EEI65697.1 signal recognition particle protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAFEGLTDRLQKAMEKLRRKPKVTEADLRETMREIRLALLEADVNFKVVKDFVKTVREKAAGAEVLKGLNPAQQIVKIVN
DELTKLMGEEAVPLNKAPHIPTVIMMVGLQGAGKTTTAGKLALRLKNENHARPMFIAADVYRPAAITQLQQVADQIDVPV
FEKGTDVDPVEIVREGMEVAKKNHNDYVIIDTAGRLQIDEQLMDELANIKELVNPNEILLVIDSMTGQNAVNTAQGFDDK
LDITGVVLTKLDGDTRGGAAMSIRAVTGKPIKFVGEGEKMEDLDVFHPDRMASRILGMGDMMTLIEKAQKNFDEEQAQET
MDKMRENTFDYNDFLAQMDQVTKMGPLENIIKMMPGMANNPALKNLNLDPKQFAHIRAIVLSMTPEERENPDLMNPSRRR
RLAAGAGRPIVEVNRMIKQFNQMRKMMKQVTNGNFNGMQNMFGGQMPGGKMGQMAMNRMARKMKKDKQKRIKKLRKLRKK
K
>SEQF1778_EEI65698.1 helix-turn-helix protein, YlxM/p13 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEIEKNYRINSLFEFYQPLLTKKQNDYLELYYGDDYSLGEIAENFHVSRQAVYDNIKRTESILEDYEAKLHLYAEFQVRN
QQADRIQRYVRENYPDDATLNHLVNHLESLEEE
>SEQF1778_EEI65699.1 signal recognition particle-docking protein FtsY [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLFDIFRRHKKKEEEKTPDSSSAVVQSETAHEDEAADTTSATPASAPIHPEPVNIPPADSYEEKINPDGTHEILHNRVK
EEKEEDTSEKSHSEEVAASSVSEEEVPSFSTPEETISAEEPSSNSAETETAVEPTEPVAEEEKTVEEPVMPTKEEVVEDS
SATEESNETDNSEENDGDEEQEQQPSPEPEEDQESETVKKYDRGLEKSRTGFGARLNKFLANFRHVDEDFFDDLEDMLIE
SDVGYDMAMKLSDELREEVKLQNAKSKQDVSNVIIEKMVELYDEAGQDENPDLTMTKEGPTVIMFVGVNGAGKTTTIGKM
AALFKKQGKKVLLAAADTFRAGATEQLDVWAKRDGVDIVTGPENGDPAAVVFDAVKRAKDENYDILFVDTAGRLQNKVNL
MNELAKMKRILTREIPDAPHEVLLVLDATTGQNALNQAKLFKESTDVTGIVLTKLDGTARGGIVLAIRNELHLPVKYVGL
GEKVDDLQKFDAGDFVYGLFKGLVEVD
>SEQF1778_EEI65700.1 chromosome segregation protein SMC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLLSLTLDGFKSFAQKTTIKFEPGMTGIVGPNGSGKSNIIEAIQWVMGEQSAHHLRGDRMADVIFNGSSDRKPLNRALV
SITLDNSDHYLASEFTELTITRKIYRNGDSEYLINDQNVRLKDITDLFIDSGLGRESFSIISQGRIEEIFNGKPIDRRGI
IETVAGVAKYKKNKETAEKRLTTTMENLNRVNDIISELEKQIEPLEEQSAIAQDYLEQKKQFDVLDRTQTVRHYDEYYEK
LTKLGAKLDQAEAMVRDYQGQADRDQQQLDNLKQKRQQLNATKDRLQAIILNQTEAIAKYENQQSVSSVRREQRENEQRR
LTTQQAELNARLKEVKANQQANDEQLAEQKALINGQQAEFETARKMSSSERIATLKQQVEDLRNQQVSLMQERTTIHNQQ
SFLSRNHEQAMSLQRQNVEELDATKNQLAEINQEYDRYQQEAAITKGSLQTVSEKLKAAQDHREKLNYGYQTKQRDWYAA
LGDVRSLKSRINAYQSMADEYSGYYRGVQEVLRQRQQFPGLAGAVSELFDVPAKYTQAVETVLGSQLQQLVVDRQATAQA
IINFLIKTRAGRVTILPLDTLSHRRPLNIWPQLTGLPGFLGRATELIKFDQKFRIIADHLLGTTVIADNLDHATEIARAG
RHMVRVVTLDGQLINASGAMTGGATRSQRTGLLSQKQMAKQLEEELKKQEQLAANLEQEIAKLQQAQKANEQVVADYQQQ
VQTLQDKFHEQESNCQLISSKHETLTNRVQILETQNKQQDTQHQDYESQVQQNNEQADKVNQKLTQVVAKIKQILTQIDE
LQNDESTQARQLAQMQQKIAVAEERLQQYQRQSQEYNRQRREVEESLEKVTVAIAELTTQSASQSTSEKSTQTALKDAKE
EQAKAKVQLEDNSVALEELEQKLSQAEAHYNRLQELQRTALDDRNNLNEERVKYESMVEQALNRLSEQYSMTIDEARQQM
SDLDEETLATRLKLLKRGLDDLGQVNVGAIEEYERVRERYDFLKGQQDDLLASRAQLNQTMGEMDAQVKKRFITTFNQVS
QKFDETFQQIFSGGHAKLVLTDPHDLLTTGVDIMAQPPGKKNQHLSLLSGGERALTAITLLFAILKVRPVPFAILDEPEA
ALDEVNVQRFAHYLSKFGTEGPQFIVITHRKGTMMDADVLYGVTMQESGVSKMVSVDVVDTLQESDN
>SEQF1778_EEI65701.1 ribonuclease III [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKELQDYLAKEFNIHFDNPALLAEAFTQASYVNEHPNQGLKYYERIEFLGDAVLELIVSEYIYKRFPELPQGKLTRLRA
AMVCEDSFSKFAKECHFDQYIRLGHGEEMAGARERPGLLCDIFESFIGALYLDQGRPAVEKFVQRVIFPKLDMGWFDHAV
DAKTSLQEFLQRDGDIAIEYHLVEESGTENDPEFKVNVTANGDVIGEGKGSSKKHAEMQAAQQALDNMRNKNK
>SEQF1778_EEI65702.1 acyl carrier protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADNKKTEIFNKVSEIVADHFDVDRAKITDDLNLKTDLDADSIDFVEFVLELEDTFGEEINDEDAEKLSTIGEVVDYIAE
HTAN
>SEQF1778_EEI65703.1 fatty acid/phospholipid synthesis protein PlsX [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIAVDAMGGDNAPQVIIEGVEEARDLYPDLEFDLYGNPDKVKPLIKNNERLNIVATSEEISMGEEPVRAIRRKKDSSIV
RAATAVKEGKADAFFSAGNTGAILAAGLFIVGRIKGIDRPGLTSILPIAKPGASRHNFVYLDTGANAESKEKNLEQYAYL
GKFYAENVLGVANPRIALLNNGAEEDKGDKLHKEVWQILNSKDDLNFVGNIESGDLLFGKADVVVSDGWTANAALKATEG
TAKMMMTLIKDGILHGGLRAKLGYLMLKPVFHQIGQKMSASTYGGAVLLGLKAPVVKTHGSADALAVKNTISQIRTMIKT
GVIEKTVEFFDNTENLDNSKKNE
>SEQF1778_EEI65704.1 ATP-dependent DNA helicase RecG [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKKEVKDLRSLTDSVANLKGVGPKRVADLATLGIDTIEDLLTYYPTRYNDFTPTDIESAKDKQKITLQGVVVSEPLLVR
YGYRRNRLTFRMQVGNEVVIATFFNQPYIKKQIELNQQVTVMGKWDASRRQVTGNKLLKEKADDRNEFGAVYAVNKHIRQ
NVLQSFIRQAYEEYANIIPTYLPETIRQRYRLMDRRQMIREIHFPQTQATAKAARRTAAYEEFFLFQLRLQAIRRAHRQE
DGERILYHNDELKEFIGGLPFELTDAQKRVVNEICRDMRQPYQMNRLLQGDVGSGKTIVAAIAIYAAITAGYQAALMAPT
EILAGQHAEKLAKIFEGTHVQVALLTGSLTAKQHRELLTAMKRGDVNLIVGTHALIQDGVEYANLGLVITDEQHRFGVNQ
RQQLREKGEHPDVLAMTATPIPRTLAITNYGEMDVSIIDQLPAGRKPIQTKWLQSNQHAAAIHFLREQLKQGAQAYVVSP
LIEESAALDVQNATDLYNQLSADLEPAYKVGLLHGRMGTEEKDEAMRQFKSGELQVLVATTVIEVGVDNPNATVMVIYDA
DRFGLAQLHQLRGRVGRGSRQSYCLLIADPKTDEGKARMKTMVATDDGFKIAEQDLKLRGSGDVLGKKQSGMPEFKVGDP
VADLKMLQIARADAGNLLGMPNWDQVDENQPLVLYLKRHELETHFD
>SEQF1778_EEI65705.1 DAK2 domain fusion protein YloV [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGRNFELAVTKITNLEFGKMVQAAADKLGKNAEFINSLNVFPVPDGDTGTNMTSSMASGAKYERNETSKRVGDLSAALAK
GLLMGARGNSGVILSQIFRGFAKATEGMDVLSTADFVNAYANGAKTAYKAVMKPTEGTILTVVRESAQAGLNKIKETDDL
VEIMHTIYEAGEEALKKTPDLLPVLKEVGVVDSGGQGLVFVLQAFDEALSGRVDKSDDYKPDNAEIDEMVHAMDHQSVQG
KLNPEDIKYTYCTQMLVRLGKGKQVTQKFDYDTFYNYLADLGDSLLVLNDDQVVRVHVHTEHPGKVLSWGQQFGDLQTIE
IHNMVWQQEEIMEKDEEDADSESPIEKAKAAAEAKKDLQTAVIAVASGEGIAKLLKSLGVTHIITGGQTMNPSTQDILDA
INNSGAKQAIVLPNNGNIFMTADQAAEVADIPTKIVHSKTIAQAMSALLEYNPEASLDENQANMEANTNTVASGAVTNAV
RDTTIDGREIKKDDYMGIVDGKIVTTDLELKEAAIKMVKAMLDEDSEIVTILYGAGGDQKTAEEIKAAVEEVDDELDIQI
YDGGQPVYPYLISVE
>SEQF1778_EEI65706.1 hypothetical protein HMPREF0534_0958 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTMAVKIKTKSGTIDIDNDVISSVVGGAATDNYGVVGMASRNPLRDGVNQILRRENFARGVVVRQQDNGVAVDVNIIVGY
GTKISEVSKSVQAKVKYNLETMLGITANSVNVCVQGVRTLED
>SEQF1778_EEI65707.1 ribosomal protein L28 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKDFINGKRTQFGNKRSHALNSSRRSWKPNLQKVTILVNGKPKKVYVSARTLKSGKVTRV
>SEQF1778_EEI65708.1 thiamine diphosphokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVNILVGGPLEMVPTELILQRKDEKWIGVDRGALRLLRWGIKPVLAIGDFDSVTGEELQGLEGKITRIKTYPPEKDYTD
TQLGVKFAIQEQADEIEIFGATGGRLDHLLANLFLPLQSEFKPYLTKIKIIDCQNVVSYYLPGDYTISRLPHKKYLAFVN
LTPVRGLTLKDEKYPLQNWSSQILFSWTSNEFTAEENHFSFESGIISVIQCSDQLK
>SEQF1778_EEI65709.1 ribulose-phosphate 3-epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIKNQIIRNEGIRMIKVAPSILSADYVNLQKDIEKVEKAGAPYLHIDVMDGTFVPSISYGPGFVKAIRPITNMVLDVHL
MVESPEHILPMFIDAGADIIGVQVEATQHIHRALQIIKNGGVKAEVVINPGTPVAMIEPVLHMVDQVLVMTVNPGFGGQK
FLPETVDKIAQLNAIKEEKGYNFDIEVDGGVNDKTVVDCYKAGATVAVAGSYVFNAEDPAERIKALEDATK
>SEQF1778_EEI65710.1 ribosome small subunit-dependent GTPase A [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTGIIQQSLSGFYDVIADEKIYRTRARGNFRQRKIKPVVGDHVEFSAENQQEGYLLKILPRRNQLVRPPVANVDMAVVV
TSAKEPAFSANLLDRQLIALEAQDVTPLIYFSKTDLLTDDEYQQLLPTIEGYRKIGYHVYAARELFNPDQLVSLMEELKG
NIVTMMGQTGAGKSTLLNHLAPQLKLATGEISRALQRGRHTTRKVSLLDVNGALIADTPGFSSYETFDMTVNDLPHLFPE
MAKISADCKFRGCLHIKEPQCAVKEAVNNGIIMKSRYDDYLQFHELIANQKPNYKK
>SEQF1778_EEI65711.1 kinase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNPGYEIGHRYRIIRSLGEGGMANVYLAHDMVLDRDVSVKLLRLDLRDDPNTKRRFHREAMAATQLNDPHIVGIYDVGED
HGLQYMVMQYVKGTDLKAYIKKHYPIPLPQVIDIMEQVLSAVATAHAHGIIHRDLKPQNILIDENKNVKITDFGIAVAVS
QDSLTQTNTLMGSVHYLSPEQARGSIATKQSDIYSLGIILFELLTRKVPFEGETAVSIALKHFREEIPSVREQNKEIPQA
LENVIIKATAKEPAERYSSVNEMAADLKTVLDPQRANEPRLKIQQDDNGETKVLDIKHLKADDYQPKKSTDSPTVDLSTK
PQKWKKYGIVSGTLGMIVLIAVCSWWFLIRQVIIPDVEGMTVLKAEQRLHQQNLRIGKITRVNSQAVDKNRIVSTNPDVS
HKTRVSTPINLTVSTGVKQLQMADYVGEDYSSVAANLRRKGFQVHQEPVYSDDIDKGQIIRQNHKKGTIVKPAANTIIFR
VSAGKEPIKIPNFKNQDISAVQQFANKNNLQLTTQEKKSKTIATNHVINQTPRAGSTLNHGDTLTVSIANSGNQTKTTNI
QINIPFDGNGGQRENRVQVYIRDANHNLTMEYQDITINQETTINVPFTLKQGQTGAYRVVRNGRTIMSATNITG
>SEQF1778_EEI65712.1 protein phosphatase 2C [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKAAYQTDIGHQRKQNQDRVAVFTNKLGNQLMVIADGIGGNRSGDIAAEQTVATLGSQFKKRPPQTSMEGIRWFARETQL
INNKILAQSKRNLRLQGMGTTMVAAIAFKDAVVVANIGDSRGYILHQNLLTQITVDHSLVNELVKTGDISEDEALKLPQS
NIITRAIGISQDAQVDVNRFELNEGDQLLMCSDGLFKTVSKERIIKMLELPRPLEEKCAQLIKMANDAGGPDNITVLIGI
NSNQEG
>SEQF1778_EEI65713.1 ribosomal RNA small subunit methyltransferase B [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTKFQPQNARELALVALKGVVENGAYSNLQVDQLLKRYPLADKDRRLATNIIYGVLQHKLTLEYWLNGFVQGKRLDPWV
KTLLLSALYQYHYLERVPDWAVTDESIEIAKRRGNPGIRKFVTGVLHAILRKGLPDLRQIDERDLRLSIENSVPRWLVNE
LTREYGEEDTEKVLQSINEPAHQVIRVNIVKTDLPTVKQTLDAAGIEYQESQVAQNALVITKGEIISSDLFKNGEITIQD
ESAMLAVESMHIEPGDKVLDACAAPGGKTVQIAEALTNEDGHVDALDIHQHKVRLIEKNARRLGVEKRVTAHALDAREVD
QLFDDESFDKVLVDAPCSGIGLLRRKPEIRYTKTLNDSKQLHKIQLAILNAIAAKVKKGGIITYSTCTILQQENDDTVQA
FLAEHPEFELVKTTTARKVKDNRHSPTLTILPSDFDSDGFFVSSLKKGI
>SEQF1778_EEI65714.1 methionyl-tRNA formyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTSVVFMGTPEFAVPILQSLIDNPEYDIQAVLTQPDHHIGRKRTLHQSPVKELAEQYNIEVLQPAKLSKSPEMEKIINL
QPDLMITAAYGQFLPTKLLAAAKIAAINVHGSLLPKYRGGAPIQYSIINDDKETGVSIMYMVKKMDAGDIISQRSIPIED
TDDSGTMFKKLSLLGRDLLLETLPKLISGDVNPVAQDPDKVVFSPNITSEQEQIDFRLPARLIDAKVRGLRPAPLGNMII
DGLRTKIYDVTPLEEKTDLEPGKVVRVTKHQLVIAAGDGTTYQINKLKPAGKKAMDITSYLNGHKDITEGGQVVSED
>SEQF1778_EEI65715.1 primosomal protein N' [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPELAQVVVDVPTMQTNQPYTYQIPPKLEKQIQVGVRVIVPFGKGKRTVQGFVVALDNASQYEGELKPIQAIMDLQPVIN
PELMNLSKWLADTTYSFWISCLYTMLPNLLKAKTTRIIRIVDEVDEHVAFDIFHGRDELEMAAVQDKPAILSKLFKLQKE
GKITIEYQVEDRAKAKTVTGIRSLLNFEQLEDERASLHANAHAQNRLLSYLQSIGSQVVKQKDAEHKTGLKAATFNQGQQ
KGWLEKTPVEVYRQPLAMQGTLDDAHLAAPLQLNADQQNAVNQINQAIDNHDPKVFLLQGVTGSGKTEVYLQSIANALQQ
GKTALMLVPEISLTPQIVNRVRRRFGSKVAVLHSSLSNGERYDEWRRIERGEAQVVVGARSAVFAPLTNLGLIILDEEHE
SSYKQDESPRYQAREVAKWRGKYNQAPVVLGSATPSLESRARAVKNVYHLLRLPHRVNKQELPPIEVVDMRDEIKKYGES
NFSQKLLTELNDRLQKNEQSILMLNRRGFSSFMMCRDCGNVLKCPNCDISLTLHMDTRTMKCHYCGHEEPIPRECPNCHS
HQIRYYGTGTEKVEQELHQLLPQARIIRMDVDTTRRKGMHAKLLRQFGQHQADILLGTQMIAKGLDFPNVTLVGVLNADT
GLGLPDFRASERTFDLLSQVSGRAGRANKQGEVIIQTYNPDHYAIQDAKMHDYEKFFNQEMMLRRQASYPPYYYTVRLMA
SHPEEAKAAQAMADIYGRLKQGLLSSTVILGPTPRAIARMKRRYYYQIVIKYKKDPYLHQLLFDILQDTQSRGFKDVQVS
IDPDPQYFM
>SEQF1778_EEI65716.1 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTRIAVYLTGSIAAYKGIEVVRGLQKMGHEVRVGMTDAATKLVTPATPFALTKAPVLTDLWDEHSTPIPHIELADWSELA
VVVPASADIIAKMATGLADDAVSTTLLATSAPKIVVPAMNSHMWLAPATQRNITQLKQDGVNIMPPVSGRLAEGYAGRGR
LPEPAAICQYIEDFLASSRALKGKHVIVTAGGTRENIDPVRFIGNRSSGKMGIALANAAVQAGAKVTLIAGQVTVPLPQS
PAIEVVRGITTEDLYTSLKERFAQADILIMAAAVADYRPVEIVDHKIKKKDGNPHLTIALTETIDILKNIAKMKQNGQYI
VGFAAETNDLLENANRKLASKNADMIIANSVAGDMGAFGSDQNQVTILQKDQTPIKLARQSKAKIANEIIELISAKLKSG
D
>SEQF1778_EEI65717.1 DNA-directed RNA polymerase, omega subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILFPSVDELLKHIDSRYSLVMLASKRANELDAGAAPLLEHYDSSKSVGKALEEILAGKVTIDPDHTEDLQD
>SEQF1778_EEI65718.1 guanylate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANRGMLIVLSGPSGVGKGTVRKAIFDSNDNDFQYSISMTTRKPRPGEVNGVDYFFVSKEEFEHQIQTGGMLEYAKYVDN
YYGTPLKYVNETLDSGKDVFLEIEVNGAMQVRSKCPDGVFIFLTPPDLDELKQRLIHRGTDSMEVINKRIHKAFSEIQMM
QNYDYAVVNDEVPNAVEKIKDIIRTERLRVTRVMPRYLEMLGDAEK
>SEQF1778_EEI65719.1 hypothetical protein HMPREF0534_0971 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFGGAIMQIEQKSIFKFTPQTISDKLRHLFEEAPADDQQAGLLTPQPAKQRQLFLKRAIKDKIKATFQLMPINNDGYPVN
VTGNIAQLANSNRYLITNQNVSYVVNFDQIRYIANL
>SEQF1778_EEI65720.1 DNA repair protein RecN [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQELTIDNLAIIKHLTLTFADQMTVLTGETGAGKSIIIDAVGLLAGGRGSQEFIRRGEEKLSLQGQFAIPDDPEFDKLL
ESLGIDHEDGILIVSREIHRNGRNIIRVNGQLINTATLRQIGAGLVDIQGQNEHQQLMQPETHLGMLDQFAAKEVQPLLQ
KYQEEYQAYSKLKAAVNKKQANEQQWAQRLDMLRYQVNEIAEANLKENEEDELISERDRLEHFQQINNALQLAVTTFNEG
EQAPVLDQVATVMDSINAIAEFDDAYDNLSKALNDAYYALQDVANEASQQLDMLEFDDERLAQIEQRLTTIGDLEHKYGD
TLADVLKYYDKIKKELDSMEAAADSSSDLEQRLGEAENKIRETGRKLSQVRQKAAHELGKKVHQQLKELYMEKAEFEVHF
ANQSREQFTPTGIDQVEFYIRTNPGESMGPLAKIASGGELSRVMLALKTIFAQKEGVTSIIFDEVDTGVSGRVAQAIADK
IRLIAQHSQVLCITHLPQVAAVAQHHFLIKKSVHDDRTTTRVTPLKENDRVEELARMLSGEKITQLTKEHAQELLNMAK
>SEQF1778_EEI65721.1 arginine repressor, C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKAERQQKIREIITNESIERQEDLVARLREIGLTVTQATISRDIKEMQLIKIPADNGGYRYGLPAYHHQGHENQLAQTL
QDSLEQLKRNDCFLALTVHPGNGPVVATLIRKMDFPTVFTTIGDDGNVLVVCMSPEAAIKLEEKLNAMLG
>SEQF1778_EEI65722.1 ribosomal RNA large subunit methyltransferase J [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKERVDVLLVQQGLFDSREQAKRAVMAGEILGKNNERLDKPGQKIPITTTLHMKGHKMPYVSRGGLKLAKALKVFDISV
KDKTVLDIGSSTGGFTDVMLQNGAKLSYALDVGTNQLVWQLREDPRVVVMEQTNFRYSKLADFTSGQPEFASIDVSFISL
RLILPPLAQILKMGGEVVALIKPQFEAGKEHVGKNGIIHDHKVHRAVLKEVLTFAREDHFDILGLDYSPIKGGQGNMEFL
VHLRLSENPGIVAEEVNIDKVIATADDDLNHKE
>SEQF1778_EEI65723.1 polyprenyl synthetase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTPLPILKEQIEDYLSKSLATDIDQATLESSMSYSLMAGGKRLRPALTLTTIEMLGGTLNDDLLRAASALELLHTYSLI
HDDLPAMDNDDLRRGKPTNHCKFGAGMATLAGDGLLTLAFQWVADNHLPANVRSQLTLELAKAAGPSGMVAGQARDIEGE
HQHLNLNQLKYLHRQKTGELIRYAVLAGGIMMDQSAEIKQELAAFGENYGLAFQIYDDLMDVLSTTEEMGKAVRKDADEQ
KNTYPGLLGIDGAKEQLQIALTAASQNQKNLEKLTGMSFAGYDDFLAYFK
>SEQF1778_EEI65724.1 exodeoxyribonuclease VII, small subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATAKPTFEEQLAQLQQIVNHLEQGNVPLEEALQQFQEGIKLSKELQTKLTNAEKTLGHLIDDNGDEQVYEKQTDDPSNN
GGGNRGFGSTDEQ
>SEQF1778_EEI65725.1 exodeoxyribonuclease VII, large subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDRSQYLTVSELTKYLKMKFDRDPYLHTVYLTGELSNFRLRQKHQYFSLKDDNAVIDAVMFEHQFRKIKFTPEQGMKVCV
VGHVSLYEKSGRYQIYIDRMEPDGLGSLYLAFEQLKKKLSAEGLFNLPKKQIPMFPKRIAVVTSIDGAVIRDINTTVRRR
YPIAQVVLYPTVVQGDKAAADIARQINRANDRGDFDTLIIGRGGGSMEDLWPFNEEVVARAIANSKIPVISSVGHETDTT
IADLVADQRAATPTAAAELATPVKLNDVLMTLKDDQNRLLNTMRTKINFDRQQLNKQLQSYIFQQPTRLYENYAQKVDQL
TQQLGQAAQNKMQEMRMNVERLSGRLTAISPLHRVQQQEQLVNQLQKQLVTASLASQNEKKQQVTTLIKQLDSLSPLKIM
SRGYTYVTSDEKVVNHASQLTVGQNVHLHFDDGEVQAEIKKVKEH
>SEQF1778_EEI65726.1 tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTIIDGKALAKKINAQTQKLVAQLKEKQNITPGIAVVIAGDDAASLIYTRNKHNKAIKLGINSVLKKFPADVSQDELLA
EIEKLNHDDTIDAILVQQPLPPQLDSEVITNAILPTKDVDGLNPLNLGKLFANQHGNYPVACTPRGIMRMLSEYNIDLQG
KNAVIVGRSILVGKPLLALLNNANATVTMAGRNTGDLSALTKTADILIIATGVPNLIKAPDVKPGAVVIDVGINRLSNGK
LTGDVDFEAVKTKARAITPVPGGVGPMTIATLMEQTVDLAQWRHHG
>SEQF1778_EEI65727.1 transcription antitermination factor NusB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLNRHMIREEAFQVLFALQSDPEADIQTVYEAIPHHDEKQIPPYLLTLVNGVREHQDQLDEQINDLLASGWTINRLAKP
DLVILRLALFEIQYAENVPTVVAINEALELTKTFSSDKSRKFINGALGKFERQVNTNN
>SEQF1778_EEI65728.1 hypothetical protein HMPREF0534_0980 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEESKIVLSSEDKSLGTIQISPRVLEIIAGIAASEIDGVSKMYGSFANSVSELLGRSDRRRGVKLSSNDKKLSLDVDVY
VEYGVSVPKVAAMIQDKVKQQITLMTDLKVKEVNVHIKGIVTSKEDQQVDPNDLFGEHLNDEAGE
>SEQF1778_EEI65729.1 hypothetical protein HMPREF0534_0981 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLTTLYNNINQQGMSAIRNHQEQLDRNLLNPDKDMRRGLTLTASLPAHVSRNIMFCLQKLAAIEPNQYFYPPADLHITI
IDLIAASSYFSLSTFEEEKYKNVVGQIISQIGPIHWRLAGMITSSGTLLVKGYYSAELSTLRNVLRKELPLHDLLLKERY
PTISGHVTVARYTSPLQQAGQFLKTLEEFKSINFGQFTTSSLDLVVHDWYNHNSRLISKLALCS
>SEQF1778_EEI65730.1 Creatinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSRIKRLQKKFEKLYIDAFLVTDEKNIYYLTGFNLIEGDGCLLITKDNAIIITDDRYQLALEEFENDEVVGMITRDYYGS
LNKICQGMKVTVLGYEDTVTYALFDMLDEQMATDLVPFHQQIERMRMIKDSDEVNALRASADLHSAGYRYLLENVHAGMT
ERHVANLLDFWMKEHGASGASFPTIIASGKNAAKPHATASKKVIEDGDIVTVDFGYYFNGYTADMTRTFAVGSIDPELRD
VYQIVNEAREAVIQAAHVGQRGDQLDFAGRQLIEIAGYGDEFNHGMGHGIGLSVHELPASYGPSAQNIKLRNNEIITVEP
GIYIPEIGGVRIEDDILVTHGGVEVLTKAPTDLIIVGK
>SEQF1778_EEI65731.1 pyridoxal phosphate enzyme, YggS family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTIVDKAKDVQEKIIAACKRSGRDPQDVQLLPVSKNHPAADIAELYKAGWNSFGENYVQELDKKHDELPADINWYMIGHL
QRNKVKYIADYVTMIQSVDSLKLMKTIEKEGRKHNRIIPILIEVNVGEEESKFGVKPTLQDCMELAEASLQLPHVKLRGL
MTSAPYYDDPEKTRPIFRRLHELRDEMNNQNDQLKLDVLSMGMTHDYEIAVEEGSTCVRVGTAIFGPRDYSNRQY
>SEQF1778_EEI65732.1 ribosomal protein L27 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIMNLQFFSHHKGGGSTANGRNSAGRRLGTKAADGSIVTAGSIIYRQRGTHINPGENVGRGGDDTLYAKVAGVVKFERMG
RSKRKVSVYPIAE
>SEQF1778_EEI65733.1 hypothetical protein HMPREF0534_0985 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIRAQFNLDSNQRITSFKMTGHAESGPYGQDIVCAAVSALSISTVSGLEQVVHTKPHLKQDNDNGGFLEVTGLDLGHDSQ
ILLKTFLNGLCDIQESYPQNIEVKMFD
>SEQF1778_EEI65734.1 ribosomal protein L21 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYAIIVTGGKQYKVEEGASIYVEKLDAKEGDKVTFDQVIFVGGDDTKIGTPVVDGASVEGTVDKQGKEKKVVTFKYKPKK
HTHTKQGHRQPYTKVTINKINA
>SEQF1778_EEI65735.1 ribosomal protein L19 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSAKGKKYIMRQNKLIEKITASQLRDDIPEFRAGDTIRVHARIVEGSRERIQMFEGVVIKRHGAGISATYTVRKISNGVG
VERTFPVHSPRVDKIDVLRYGRVRRAKLYYLRERTGKATRIAERRRDN
>SEQF1778_EEI65736.1 hypothetical protein HMPREF0534_0939 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIAHFHYAASRGGEVIPQIIGPDYQGCLMCDGHSAYQQSRLPNGFLGACLIHVMRKFKELVKIGKGAKALEHSKAAKAVE
KLGESLSHRGWSKLYNSGPKSSGTKAKSQTVVR
>SEQF1778_EEI65737.1 hypothetical protein HMPREF0534_0940 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPLDNNHDEQQIRPTTIGRKNYLFTKSEVGAKANAMWYSIIQTAKLNKLRVREYLEYLLEAFAWTDQPDWKAYLPWAPEI
QERFCITN
>SEQF1778_EEI65738.1 Gram-positive signal peptide protein, YSIRK family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDGLLKRKGIRGMNKEFQTLRKKQRFGLRKLNIGVASVLLGFTIFGYNLTSQAPVAHAATVATSAVSGASGGGVSGSGSA
ATASQATPATQVTVSAASQSSAPANSGNATSSPASQAGTVSANHTAIGTTPSSQTVSVNETTSSATQARTLMMNLASATQ
ARTLMTNLAVINPDTAENTPNSGTDTKLPTTTQTYDKVKQPLLYDYLLHTATGTRDGQTWVDKTLAKGKGTILSPYYRSN
TLDTIFGTTLKQGIITKNPDKYFFAAYVDFSEQYHRVILLARSQTPSDKSLYSYTIHTFTQNTSTTTTKPGDSNKEQYTG
AGGSTYDLIFHNYGDSFTVKLNDFNGKWGMLPVFDEGLLDPTYGSNTLEQNDKAAQTEPISFWASAIPQETSTKVRYVDQ
ATGKDIVQPMEISGFGYQGFKVKGDAPTVTGYKLVSKPKFLGLPYEDGTIAPYKVWQTYDLALSDSVVIKQTVIDTDGTV
RATAYYKGSRIPSMSASKVLGRESYNDYMSFYARDGKSYAYTNRIGQVDGSYIYYYAKDSDPKGSDMRLHFIDVTGVNNS
SYAPSDGPELDADKVQTIHGNIGENYNFTYTVPKGYDQVATSDVTGTYSKTHHDAYVYVKKQAENSDTDLINAKAGNTPD
VPRGVE
>SEQF1778_EEI65739.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEYTKKNYKKAPLSSIHFRIYFALALGQIACGFALGISGTALSQATDYINITDFWVGLIGAGSLIGLAGSALMGKIADQF
GRRRMLMLDMYLFSIFSLLQLVTMNLIILFILRILIGLMIAIDYTVGNALLVEWLPAKESGRLQSQLIIYWTIGFITSYI
AGILVTGFGVHNWQVILASSVVPGLMAAIYRSIFRIPASPSWLASQGKNKTAQKLIQKHLGKKWGLSLKQIRSKKPKAVS
LKTLFNPPYRRKTIVGGLFYACQAFSFFGISIFLPILLKSMNLGNNNLSGIIYNSCVLIGVIFGSLIFKILSRRMFLVRT
FFLSAAALILLIIGNNFSPFFQISVFAIFAIVLSSGLVLDYPYPTELFDVKVRASGVGTCITISRFGAASGTFLLPILTH
LGGPILAMLICTLVLLIGGTICLLWAPETSPKYI
>SEQF1778_EEI65740.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLNIMRKESLDRYLGEDKLFVKSMNARDLMAIGIGTVIGTGIFILPGTIAANSAGPGVSLSFLFSAIVCALAAMCYAEF
ASALPVAGSAYSYGNVVFGEFLGWLLGWALVLEYMLAVASVSTGWAAYFNTLLEGFGIHLPKALSGPFDPAHGTYINIVA
VVIVLLITVMLARGMQSSLRINNIAVFLKIAIILIFIIVGFFFIKPKNYHPFLPYHMKGVIHGATIGFFAYLGFDCVSSS
AAEVKNPKRNMPLGIIGTLAVATILYTGVAVVLTGMVKYTKLDVANPVAFALQMVHQDWLAELLSIGALIGMFTMMVSMI
YSSSRLIYAIGRDGLLPSFLGKLDKKSHSPQVALWIVAIIIAIMGGLVSLDQLTSLVNIGTLFAFMLVSFGIIPLRKRKD
IGNRGGFKVPLYPVLPILSGLACLGMMTQLQKETYIGAAIWFGIGIIIYFTYGYWHSKLADKN
>SEQF1778_EEI65741.1 hydrolase, NUDIX family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPKWFVTFIINNDTLVNIKSKLEKFNYKRGIKMAIEVTSGAVVYRQGENGIEYLLLESQNKGHFWGFPKGHVEGNESLKE
TAIREIKEETQLELSIDTSFKVYTEYDLPNGNHKQMTLYTAELDNKEDIHLQVEEIKNCGWFNYQDARERLTYENLKELL
DQVNDHLK
>SEQF1778_EEI65742.1 hypothetical protein HMPREF0534_0915 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNNKYVFIVTGAAGSGKTTVANYLQDHYDMHRVITHTTRLPRPGEQDGVDYHFETPSSLKKLHLLEQVTYDQFQYGSSL
EGLAEGWKQGENDVIVLDTAGAITYHHQLGAQAVIIFLTVTHMASLAKRMTLRGDKLSAIRSRLHSKEYHRDLALPAALK
GIAHVVVNDQWKNTKQQIDIIVRQILSKKN
>SEQF1778_EEI65743.1 transcriptional regulator, Fur family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKLIDQAQTIIKDHHLRWTKQRKMMIESVARHPDRYFNIVEIDQYLREQFPGLSHDTIYRNFKEFEKLGIVELRQQHDQ
MQVKYSCDFTHHHHFICDICGRVQEIQMPPIDKKFFEKQLPGVKITGHRFELHGICAQCQKKSLQ
>SEQF1778_EEI65744.1 hypothetical protein HMPREF0534_0917 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGAKIPPLVTPFALVSLVLALGATNVVVNKATHTSEGAKVTSVSTSRQFQQSGDEESNQSSRNSQSDRDDNDESASNSST
TRTSNSNNTTDDTGDTNQPTRSAGNTGTETSTNRSANTNESTSANRNSTSQSTGTTTNNNTTTQDTTGGNTTGTTTTE
>SEQF1778_EEI65745.1 hypothetical protein HMPREF0534_0918 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFSFLDMINSSLSYFNLDVKLKSRIYIIIALLGDIYLVYVTFRLFMNHVWLRALLYCLAVIGLTYFIYLNFVFYFLEKTS
RFDFISPRVAKITGQKFEDGKAKTPLDAQQRLAAELANRSNGLFANADTIPAAVAIDEHEQHNLQRVVDQLLMEGVFVNG
YDGLSEKEIVEQYQATEKPVTALNSQSVPPYFELVHDELQHRLEIYIGMNQMERRPVGHITKIGLTDVHTAHDKYQLYLA
TVVVTGGPNKIAGRSGSTILTEEDYGLQVQVAYKQRNNA
>SEQF1778_EEI65746.1 PspC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKTKKHLTKSKDKVILGVFGGIADYFGLDETLVRIIGILIFVFTGFFPLGVFYLLAALVMPEYNGNKTNNDDNIVDGEF
REK
>SEQF1778_EEI65747.1 transcriptional regulator, TetR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVTRTIRDFENALITLLEKNSFESLTVDQICKEALMHRSSFYRYFSDKYDLLEQTLNAQINKLTDNTDSEDDIIKQLLS
YIDKNKDVIRHLAPNSARSSLYTEILNILSQVLLERRNLETNDPIVTALQKSDNPEMLAYVLSGAIIGTFYWWQGNNYDV
PTEDVINFARAATKSLTN
>SEQF1778_EEI65748.1 YhgE/Pip domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MWSMIKGEFRHIIHNRLLLLSVTVICFIPFLYSIFFLKSVWDPYGSTRNLPVAVVNKDIPVEYQGRKMDVGKQTVDELKK
NHQLKWEFVSAKEAKYGMSHRKYYAVVTIPKDFSENATTVLQKHPKTMKLNYQTNGSLNYIGQVIVQTGMTRLNEKIRAQ
VTNAYATVMFKQLHVVGKGMNKAADGAQQIGTGMVTLSDGVNRYVAGVSQVNNGVQTLRVSVAPLASGAQQLATGSQTLA
NGIMQYTGGVSLLGNGVGQLMANSGALNSGANQLSSGLSTLMANSGALNSGASQLNAGLNTLMANSGTLSSGANQLSSGL
NTLSGNSENLRNGSGQLASGANQLNSTVNSQLGNINFNGIMGAMDQAQNLQQGLGQLQTGLATAKNALAGVQSSAASLQQ
ASGALSGAAGAGDKLKGIATNDGQIAGLAQQILSDDKASDQSKKAAQQIVQNASANVAAIQGLSGTLGQLNNLQGSLSGM
QQQLGQLSQMSAVLDNADGTIRQANSLLATLNGYKGTLAAMPGAVDQLKQATSRISSGASTLNSGVNQYTNGVDSAAAGA
GTLNSGIGQYTAGVAQAGAGANQLASGIGQYTAGVAQAGAGAGQLASGIGQYTAGVGQLGNGIAQLNANSGALNAGAAQL
AGALGQLNGQVPALIAGVNQLAAGTQQLQDNSPALISGIARLNAGASQLATSLAGGAKKINGIKTSPRTAKMFAEPTALK
HTDYSYVPNYGHALAPYVLSLAIYVGALVFNFVYPIRRVAEFGKAPIAWWASKVTVGSLVVTAMAIAEDAIMMACGLTVI
HPVAFFATTICFGLASMAIVMFLSMLFDNPGRFFAMVLLMLQLGGSGGTFPMEITMKFYNVIHWYLPMTYSILGLRDSIS
GGLGAHYTMFCNTVLIVIAIVFYALLLVGMIWLQHHHYAGRSELDNNQELLGPEGDYDGMHLQQRRPNQGDNGEQ
>SEQF1778_EEI65749.1 4-phosphoerythronate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGMGKLMKLIMYSVRDTEKPYIEAWAKKTDNDVKMVTEPLNANTVKLAEGYDGISLQQTTKLGDEQLYEQLAAMGIKQL
AARMVGVDIFDLDACKANGIIVTNVPIYSPRAIAEMGVTQAMYLLRRIGEFEQRMSHGDFRWSDDLISNEIYNLTVGIVG
LGNIGGATAQIYKALGAKVLAYDPSYNVEYEPYVEYTDFDTVVKNADILSLHTPLLPSTENMIAAPQFKMMKDNAYLINM
ARGKLVNTADLISALENKEIAGAGLDTLADETSFFGKQVTPDQIPDDYKKLAAMPNVLVTPHVAFLTETSIRNMVEISLN
DAVTILEGKHSRNEIRM
>SEQF1778_EEI65750.1 CsbD-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGLMILASDKHGIKDKVVGKLKEVEGKITNYKTRETEGKLQKAKGKAKDKATDLKETLEDKKEG
>SEQF1778_EEI65751.1 transglycosylase associated protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHWIWVLIVGGLIGLAAGALTRRGGSMGVISNIVAGLVGSSIGEAVLGAWGPQVAGMAIIPSIIGAVILVMIVSLIFGVK
AER
>SEQF1778_EEI65752.1 GTP-binding protein HflX [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METNIQTLEPVIITGLNTGQEDFDYSMVELAELAQANHMEVIDRIDQVIDRPNPATYFGKGKVEEIRDVADANHVPTIIT
NDELSPSQLRNLEEGTGCRILDRTALILEIFATRAQTKEAKLQVQIAELQYRLPRLQTSASERLDQQTGGGSGFTNRGAG
ETKLEMDRRTIQHQISHLRQELAAIAKSEQTKRKQRVKSAIPTAALVGYTNAGKSTIMNGLVRKYGAAEEKTVFEKNMLF
ATLDTSVRQLTLPDQKRFLLSDTVGFVSKLPTHLVESFKSTLAEAANADLLIQVIDYSDPHYKEMMETTNETLKQIGIND
IPMINVFNKADKTEIEFPILEGDDQVVISAKQDASLDLLVDVIKKHLFKDYVTTTLLIPFTDGHVVSYLNEHTNILDTTY
ESDGTLLTVEMSVQDYQRFGKYEKN
>SEQF1778_EEI65753.1 phosphoglycerate mutase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAINVYFVRHGQTYLNLYNRMQGWADGPLTPKGEEDAKRVGRALAPIQFDYVFCSDLARTVSTTRFLLAEHPGNNPTPIP
EPAFREEFFGYFEGEDGQHFADFLGGPDGYHSFAEMVAGWGPDKLKDKIAAADNYGTAEDHVAFWKRVDKGFDRLRALPD
GSEVLVVSHGATIRSIVQRYSDAYDPGDSPRNGSITKLTLDKNNTTVDFYNKLELPE
>SEQF1778_EEI65754.1 SNARE-like domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSHLFYLLTHIAETIIPMFEWMGAWSYVLLFILIFMETGLVIFPWFPGESLVFLTCSFIAFNPILKMEIVIPVFFFAALI
GDTVNYYIGHFLSHWQWLQKRMAGPRFEKAQEFLARHGIKAVALGRYVPLIRTFVPLIAGTMQFPFHRFTVGNIIGVTLW
VAIGAGCGYYFGTIPFVRQHFSLIILAFVMCSLLGVGLLALIKAIRQRIIKRNRML
>SEQF1778_EEI65755.1 hypothetical protein HMPREF0534_0928 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGREYGMSTKTEKELEQKYLDNVIDKVKQAEQKAEEKIKTAQHDIKGINKQIDDIHLNTTTYSGMMDTAMSFRAQQQML
DERQNSWQHAADRLATLQRLEKKPYFARIDFREKGANESEKVYIGLASFTDKPDHFLVYDWRAPISSVYYEGKLGKVKYQ
TPVGEQEVDLTLKRQFQIKDGVIVTIFDTDEQVGDQMLLDALGNHSSTKMKSIVTTIQRKQNEIIRDTKNELLFVQGAAG
SGKTAAVLQRVAWLLYRYRGNLTSSQVVLFSPNQLFNDYIDQVLPELGEHNMVQMTYFQFANRRVPKLHVQNLEQRFESH
QDETAKNAQQLLTSLQYFKATERYANHLGHANMRFRNLMFNGKVFLSKEKIKEIYYSFNNNYNLGNRLDGTKEALIKYLN
HRVGSEMRNKWVEDEIQSLSKEEIDNLFNNQPREFEDEDKEYKFLARQIVMRAFMPIKKAIDHNQWLNINGQFLHLLRVT
PKLVNIAEYGISAEQWKGYVDGIKEELKKGNISANGITIYLYLYDLITGKRGQRDIRYVFVDEVQDYDAYQLAYLKYRFP
RAKFTLLGDLNQAIFTHENSRSLLKQLGTMFDPEKTKVVQLTKSYRSTKQITDFTKHILIDGEAIEAFEREGNKPQVYQT
KDEQEGVAAVINILNKYQNDHDAVAIIGKDLKDSEELYQKLNANNIKTTVIRTENQRLVKGPIVVPSYLAKGLEFDAVIV
WNANDQQYHGNDERQLLYTICSRAMHELSLVSIGRTTSLLNQVPTDEYEKVNVDK
>SEQF1778_EEI65756.1 hypothetical protein HMPREF0534_0929 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MARVILHFMSTTMPVLMSLVWDKDTQRILGAQMMSKHDISETLSLISLCIQNQNTIEFLGMYDTMFQPNFDRPFNYVNLL
AQAAVAKEDKRVSK
>SEQF1778_EEI65757.1 putative membrane protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLLVAILWGSSYVFAKLTIQAGMHSGVINACRGTMCVIAGYLIFHKQINKMTWLDFKLGVLMGTINFLGYFLQTDALRY
TTPAKNAFLTTLYVAIAPLILWLFWHERPQRKTYFAVALAIIGMAVITNVANTGLQLNFGDFLTVVSAIFWALQLIFFGK
YAPKVSSPWVVIFMIGLCQGTFGWITTGLFERTNLTQIHWVQALIPLAILAIVVTFLAQGMQITAQQYTDATSAGLLLML
ESFFASTMSVIMGYDPLTPQLILGGLILLLANAIMQVNFQDVPFLRKQH
>SEQF1778_EEI65758.1 arylsulfatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFFYGGTTMKTALQKLRRVLNTKLGFFLLVVLLFCLKSYWAYQNEFNLGVKGSMQQFLLAFNTIPSALVFLGIALYFRG
RLSYWMMLIINAALSTWLFANILYYREFSDFITFNVIKGSGAASNNLGKSLMGILRPEDFLVYLDVVILALILLFHFVRV
DMRRFKVRYAMTITALGFVLFGVNLGMAESDRSQLLTRTFDNNYIVKYLGLEAYTVYDGVKTTNNSVVKARANRDELKPV
LHFIHSNYATPNVEYYGKAKGKNIFIIHLESLQQFMIDYKEDGQEVMPNLNKLYHANDTLAFDNFFHQVGQGKTADAEIM
LENSLFGLPEGSAMVTDGTTNTFQSAPALLHQKLGYTTASFHGDVPSFWNRDNAYKSFGYQYFFSKEYYPKTKDYDAGYG
MKDKIFMKESAHYIEQLPQPFYAKIITVTNHYPYILDKKNKDIEAWKTGDDTVDPYIQTARYLDESLGEFLDYLDKTGLR
QKSVLVLYGDHYGISNNHQPAIAQILGKKKVTNYDLAMFQKVPFMINMPGLKGGINHTYGGEIDVLPTLEDLLGISSKNY
IQFGQDLLSPENKQIVPFRNGDWVTPKYTKYNGDYYYTKNGKQITHQTAAQRKEIGKIQKYVTTDLGLSDKVVNGDLLRF
YKLPGFKKVDKKQYTYNLKKSLKNLQKQQKKQKTSLKSENNNQSTFDDYTTDAPELKNYPKLNFPKP
>SEQF1778_EEI65759.1 pantothenate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDEWMNYEQFDRQTWHGFFPTDSVRLTQGNLDEIKSLNDRISIEDVQDVYLPLIKLIQLRYQNFLEWQMQKANFLQRSTM
RIPYIIGIAGSVAVGKSTIARLISILLNKMLPDKRVELMTTDGFLYPNAELKRRGIMDRKGFPESYDMEKLLQFLNDVKA
GEPVVKAPTYSHQVYDVQLDKPLVIDRPDILIVEGINTLQLPSNQQLYVSDYFDWSLYVDADPDLIEHWYLQRFGMLLET
AFTDPSNYYYPYSKGDRQEAFKMAKDVWQRVDLPNLREFILPTKSRADVILHKTTGHVVDKLYLRRG
>SEQF1778_EEI65760.1 hypothetical protein HMPREF0534_0933 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFIRTKYLNQLINSMNQSTIKILVGVRRCGKTTILDQFRATLRRQEISSSQIQVINFEYLLENELCNPEYLLQFILDRLS
KHQMNYIFLDEVEVVPQFARVVNALNSLSNTDIYITSSNKTILEKENLQQMVSYTIIPVFPCSFREYIKRNQQEADSQSL
YQYLNEGGFPYTHEIHGPINLRNYVNGIINTIIITDFTQQATLCNPGLTKQLAHHLAHHAGTTQNISQIVDSLKRHHITT
SNKTVDFYLQFLQRSFIFYPCKEYDFSRRHVKSTNIRYYPVDPSIRQALTLKKNVLSQRILENIVFIDLLSQGYQVYSGR
IKDNEITFVAIKNDIFTCIQIAYSLADDGAYRRAISGLRQLSSKYKKLLITVKPALNYAGLDPDIEIIDLYSWLTN
>SEQF1778_EEI65761.1 GMP synthase (glutamine-hydrolyzing) domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPCSACKLAFKNKNLNKGSVIVANINLDAFDKIIVLDFGSQYNQLITRRLRDFGIYSELLSHKLTADEIKEINPKGIIFS
GGPNSVYDPNAFKVDPEIFKLGIPILGICYGMQLMSYDLGGKVEKADNSEYGRADIEVLDDEAVLFKGLPKKQYVWMSHG
DLVTQAPAGFEVTATSKNCPIASIADNDRKFYGVQFHTEVRNSEYGLDILRRFAFDVCGAKANWTMDDFIDMQINEIRKE
VGNKKVILGLSGGVDSSVTAVLIHKAIGDQLTCIFVDHGLLRKNEADQVMDALSRDLGVNIIKVDAADRFLGKLEGVTDP
EQKRKIIGKEFIEVFNEEAKKIKDADFLAQGTLYTDVIESGTDTAQTIKSHHNVGGLPKKLGFKLIEPLRKLFKDETREL
GEKLGIPHELVWRQPFPGPGLGIRVIGEITPEKLEIVRESDAILREEIKKAGLDEEIWQYFTVLPGIRSVGVMGDGRTYD
YAVAIRAVTSIDGMTADFAKIPWDILQKISVRIVNEVDHVNRILYDVTSKPPSTIEYE
>SEQF1778_EEI65762.1 hypothetical protein HMPREF0534_0935 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKPLRDKLIQSRLDEDELADFDEVKKQFGEKNNSKAVRRMIKDEMMLKKSEEEWKKGNLDMVTALITKLSDEGRLPLTEA
LMGITDTKTSSQLSILQNQFSDIQSQLEAIMMSVTQIGNNLNQIAKVMNKAAKENEDLTDTDLWKWISSRLFEDSRYLSV
LKKKIADFKVEVGLAKRDDEMHVYPADTQLPF
>SEQF1778_EEI65763.1 relaxase/mobilization nuclease domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLHDNDGRISVTQNGAYLERQFRTVLKRAHNPKRRYQAQTIIISFDPSEFDTSDLKAQSQQALQLVQHYVRKHFADCQSA
IAIQSDGEGGKLHAHVVMNTIRPSGKTVATNRFNIQKLRKDFDEEMQTNYQKVTGRQWTNPIHNQSNRQDIHNLTTKSEW
QQQLKELINQIKVKVTNITDFLHQLEQRGVTVTERQKGKSWTYHQVVNTKDGVKELKVRDFYQRVDKQTGEIKSTRGIGQ
SFSKSEIEHYFNKKKEKENQNYDRRENNGLEKVKTMAADAKVRIQRQRRINQIAQQRLEKATHDEERKAAKQKARLSNQE
QRQTRGTKRVSRQATKSKREGRSKQPRRSKEIEGPER
>SEQF1778_EEI65764.1 hypothetical protein HMPREF0534_0937 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKDQNDDVLKAVSDAQAIGYADGLVDRVDSLEQKIDGLEADINLREQNLDEKTQKCIAKAADLNEVGKYLEHYTQTVNNR
LVPTLRNLILSIRNGITHHTSEVTNDVYQHFQDDTGKTIDEVVKSTVNQQFKQDREDAQQASLSARMSAKVSQQNVDKMS
IVLDTFLKFIMIVGVEMVILLLSVSLTPRWWKLLTFAVLIGVSGIFDYILYRKKVANGGI
>SEQF1778_EEI65765.1 hypothetical protein HMPREF0534_0938 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVAFDVIIASDQQIDAMLHSIKRIPTWKLENTQSEREHKRIHQLQLHQQQLEQDKEAETKRKKQRRIIAVPKVQTKKPLS
HQGNDLEL
>SEQF1778_EEI65766.1 hypothetical protein HMPREF0534_0911, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
DRNNLNQAYLRVKRNKGAAGIDDMTVNDLLPYLRENKMELIASLREGKYKPAPVKRVEIPKPNGGVRRLGIPT
>SEQF1778_EEI65767.1 Eco57I restriction endonuclease, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
AGKTSKKWNEKMLKDPHLKVTFFEQDSSKVFSNTDIKGGVCVTYRDALSDLGPIGTFTPFAELQSIIHKVVFNKDKQFEP
ISKSIYLQNKFNLDALYADHPELKKKIGSGGKEKRLTTSIFSLPIFTTEKDKEHPIKIWGIINSNIRNYRFMNEKYLDSN
SSLHNYKVLLPKSNGSGALGEVLSTPLIGEPLIGYTQSFIGIGKFNNITEVENEMKYIKSKFCRVMLGTLKVTQDNNKGT
WKNVPMQNFTPQSDIDWSKSIPEIDQQLYKKYGLDDQEINFIETHVKEMD
>SEQF1778_EEI65768.1 type III restriction enzyme, res subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNTPKIKSFKRIIPMIYAYTTPNDVSHNGWTKIGYTATQSVEDRIKQQSHTIDAKVELLWRGNARYEDGTDETFTDHDFH
DYLVQKRHIERKPKTEWFHIDGRTSHQYFHEFADRDYGDLQGNDKQVQYQLRKEQQAAVDKTIAYFLKNGEGSEFLWNAK
PRFGKTLTAYDLVRKMQMQNVLVVTNRPSIANSWFDDFYKFIAWQTNLKFVSETDALKDKPVLSRQKFIDSISDGNDYGQ
VVFESLQGLKGSVYFGGEYDKLKWIEDLNWDLLIIDEAHEGVDTYKTDKAFDKIKRKYTLHLTGTPFKALAKGKFAKDQI
YNWSYADEQQAKADWNEDAEGGSNPYAVMPRLNMFTYQLSEMMSETLKQGVDLDNGDKADPAFDLNEFFRTQNGKFVYDE
AVDHFLDTLTTGEKYPFSTPELRTELAHTFWLLNRVDSAKALAKKLKQHSVFKHYHIILAAGDGKLDDDQLNDDQLDKAN
EKAFDKVQKATKEYDKTITLSVGQLTTGVTVKPWSAVLMLSSMKSPAEYMQAAFRAQNPYTFERNGELIQKENAYVFDFD
PTRTLTIFDEFANDLMAETSNGKGTAAEHETNIRKLLNFFPVIGEDDDGKMVELDAKQVMSIPRQLKSQEVVKRGFMSNF
LFTNISRIFAAPAEVREILNGLVTAKEGKAKKTEQNAIEGAEEVSVNDDGEVEIPKERVIGKSKDLFGDKVYSDLGNQLV
DSVSDTDNTDFKTAAKSISKKVNDSLNKEVINRVANDYGLSKREAKKQQQQIEKENEQALNKIADELNDQKKVAEVNYKK
EQAAARDQAELNEAKAKYETTVQNIMNDFGKRVQDHVKKTVEDVPAKVVERVEKHEEEQKLNNVEEDARAHLRGFSRTIP
SFIMAYGDKNLTLQNFDDYTEDDVFKEVTGITEDQFRFLRDGGDYVDAETNEEKHFDGHLFDEVVFNDSIQQFLEKKDQL
SNYFDDNSTEDIFDYIPPQKTNQIFTPKAVVKHMVDDLEINNPGIFDDPNKTFADLYMKSGLYITEIVKRLFRSEKMKQL
FPADHERIKHIMEHQVYGLAPTRIIYLISTNYIFGFDKELKNSLLEKHFKQIDAAKYAQEGTLQEVVQREFGEEE
>SEQF1778_EEI65769.1 hypothetical protein HMPREF0534_0876 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKADSIHLFDFLGSGKTIFEIPVFQRNYEWDKAQCEQLFKDLTIAAQNDTDHFIGAIVYVTETGNKMSHIYRIIDGQQRL
TSLTLLLKALSDADKQDHAEIEEEYLTNKYLDDNNHLKLKPVEHDYEAFESVMNEMADYDQPSKVIDNYRLFQKLISNSD
IDSSKLYEAMNHFNMVYIELSSDPNEENPQVIFESLNSTGVSLSSSDLVRNFLLMKLDSQEQSDLYKKYWVKIERMFATK
TFAEFIRHYLVVKTHVSVKRNNVYGSYKDYFITEKLNSENALADLFKFANYYDQILNHKTEDSEFNRVLDHINVMDSKVV
FPYLMLLMDLITSGEIDQGQANSLAHILESYLFRLKACQLPTNGLNKIVVGLCDLSKVNGNLKLRLLRLLKANFPDDRKL
SDSLMEVDLYHQRNHLAKLALVILEEHRTKETIDFNDAQVEHIMPQRLNAEWRLQVTNADKVKEQFGGTLGNLTLTKYNQ
EMSNKPYDEKREYYQDSNVFLTREVAKTYDHWGKDTITDRTRKLTDELIKIFPMPDIKEVSEEEITGEYTIDQTVDVTGK
KPVQITISGDDYSVKTWRQMLVVFLNDIWNKDSLNFDRIKENRQIDRMLFRVNRNPEKLENGTEIETNFSATVILAIIAK
VSEICDITDQVSYTVR
>SEQF1778_EEI65770.1 hypothetical protein HMPREF0534_0877 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNRIEKFEPKEFIKRFKELLLDKETNRILIRGYFDDDKLLLVFSCLYDLEEFNKGTVVIGNTTVPYERQFLEKGLREVV
PKFNLRDSFNVYGMIINFVQWKRNVDLPFGFDKDFALFHPVQSVLDGKDFPKFCATIKNAKAKKNILITTNDFNNTAEKL
YPYIDATLILDTTRVNEEHEKTYKVIQSNLQADHKVLPY
>SEQF1778_EEI65771.1 hypothetical protein HMPREF0534_0878 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMITNEGAFMKNKISDKDMFQNFEVKAYWFLNDNQNSGSYGFLK
>SEQF1778_EEI65772.1 hypothetical protein HMPREF0534_0879 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIYWTIGFIFSYIAGITIHGFGSRNWQIILALSAILGLVTAVFRSVAKLPASPSWLASQGKHKRAQKLIQKHIGKK
>SEQF1778_EEI65773.1 hypothetical protein HMPREF0534_0880 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MACGYALGISGTALSEAQNYIHISDFWVGLIGAGSLLGLMGSAIIGRIADRIGRRKMLMIDMYVFSLFSLLQLLTINQLA
LFLICFFIGLMIAIDYTVGNSLLVEWLPLNESGKNRAN
>SEQF1778_EEI65774.1 hydrophobic domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTNTFIKKLTNDSKLNIENLVILTCAIFIASIGLNMNSTATIIGAMLISPLMSPLLAIGTGLAIYDIKLIKNGSTTILV
EIIISLLASTSYFFFSPLSYASKEIIARTSPTIWDVMIAFFGGVAGIIGASKKEATNIVPGVAIATALMPPLCTVGYGIA
SHNLTFFLGASYLFLINAVFIILTAFLGVKAMRYLSHANNYSTSFFRLPTRKEFFFIIAILSLTIPSIFSAKQMVQQSII
ENNVHKLVASEFADSLVIKEDIDNQNKTINLTISGSKENSQKIKRIKKRLTNYNLKDYSLNVIQVAQLNAATETQLNNQV
TSIINRQRQTEDEKNKRRLIKQNKQNKKIAKLSHNINSVTSVSDTNNNHSIIVELHKKINREQKEQLTIKIKKNFPHIDK
IEYVLEDS
>SEQF1778_EEI65775.1 hypothetical protein HMPREF0534_0882 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MWYRPEKVAVWRCASRIRRSKTGRRCIIRNVKEPLLKEATVEAFNQLIEGHELASKQIKANIMKVIKISKGPTLDQLDKQ
LEEVQMKLIQAANQHQDCDALTQQIMDLRKQREKVQNCETDKQAKLHTLDEINKLVELHKYGLVDFDEGLVRRLVEKITI
FQRYMEFTFKDGEVIRVNM
>SEQF1778_EEI65776.1 hypothetical protein HMPREF0534_0883 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENITAFTGDDPESQVRKNETMNSYFGVILYQIHVGVSGNSARTHIREYGKNIVDSVDNEDFNDDVADVVDELSDSLQDA
EIHTTSDLMQSLTDENETVEALGDTFDTYMRNARNSESVDKFIRNIKQNVKYYHDLNEDGGLIGSLRYNEISEDRLKELQ
KYMRDLNQLSKELFSKYGDEIR
>SEQF1778_EEI65777.1 hypothetical protein HMPREF0534_0884 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSDSPIIIKNDKGQFQLIDDTHHTLETKTAQRGLTIFAPYFEDPKQRIFKEDLTYVQLLELVKKLNRRLERKGLPEVET
SNKFDQFVQQRQYYIKEQSQAGLTIKDGDPRWLHEFENFKKVVSQEITRPLKPEQEKASFFMTVMKRAANFSVPGAGKTA
MMYGTFAYLSSSQVNEVDKLLVVSPLNAFAAWRTEFQEVFGSKRELYYLNMRDKKYNNNPGAIKHDWVQADVITINYESL
>SEQF1778_EEI65778.1 helicase C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLVFDEVHRLKGVGGQRAKAALSLSQAPHYRYVLTGTPIPNGFRDIYNFLHLMYPDEYSSFFTWDLTTLNNIDPEDVNKK
LSPFFWRTNKQDLHVPKPDPDIIKEVKPSKNQQLLSQAIYENENGTLATFIRLLQASTNPELLATNINYKELGLVDADSG
VWDKQGSTVEKENASSGEAYKKFNLTKIEAPKFEMGIDLIDKLVSQGKKVLVWGMFVGTMQKITDTLNGMGIKTTLVYGA
TPKQDREGMINNFRIGDAQVLVSNPNTLGESISLHQTVHDAVYFEYNFNLTFMLQSRDRINRLGLPANQYTRYYYLMTKG
DVAHMGFIDNTVYKKLKDKERVMLDAIDGQLLVPEYTDDYLQEVKDIVMGRYK
>SEQF1778_EEI65779.1 hypothetical protein HMPREF0534_0886 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKPSEERKRILHKRWAIAIVIAAIIATLLHIWYLVLAFIFIVGGTCLGLNLIIDVMSWLEGDDLGPDLKSKNKRPSDSGQ
ENDISNTMWDIYTTDQIIKHSPYNNDDNFRNDNDFHDDDNFRDK
>SEQF1778_EEI65780.1 arsenate reductase (thioredoxin) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEGYAKVLLKGKYEVQSAGIETHGLNPNAVKVMAEDGIDISNQSSKLIDPDYLNAADLVITLCGDARDRCPVLFPHSRS
IHWPLPDPAHAEGTDEQKLAVFRQVRNEIKEHISKLD
>SEQF1778_EEI65781.1 hypothetical protein HMPREF0534_0888 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVYFIQYNLSGKIVEQYSCDFDQLKANPIGEKVRITTDDGKIYIGFWDTLSWIRHSSNC
>SEQF1778_EEI65782.1 hypothetical protein HMPREF0534_0889 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTYKHLTTRELTLIADFWYQGTKAYRAAKLLQRSQETIYRVYRFLNDGKTIDQYLQTYQRHKRRCGRKQTQLPTIEVNYI
HAQIKAGWTPDTIIGRHEHLISCSMRTLYRMFAHNQYGFSVKQLPMKGKRHPNGYVEHRGKAGQLGRSIYQRYRDFPHYQ
HEFGHFEADTVQGKAHRGAVMTLVKRQSKVMIVLNIHHKTDEAVNCQLDQWLAKLPRHFVKSITFDNGKEFAGWQEIANK
YDLHTYFAEVGAPNQRGLNENNNGLLRRDDLSKKLAFRYLPDELVT
>SEQF1778_EEI65783.1 cadmium-exporting ATPase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKLQQFFMRYKKQLLLVNTILLLLAEGSKWLLHMNLPYQALMLIVGIVGVLPIVLTAISSLRVKLISIDVLVSLAVIGA
FIIGKFNEAAIVTWLFMLGDVLEESTLKKTRSAVADLTKMAPQTALVVQDDGSTEKEDVDFIDPGEKILVKTGDQVPVDG
KVISGSGYLNEASVNGESKLVNKKAGNEVYAGTILENGTLTVETTAVGEDTTFGKIIEMVEEAQDTKSHTEKLINRFSKY
YTPAVLVIAIAVGLITKDLKLAITVMVLGCPGALVIGVPVSTVAGIGNGAKSGIMFKGSQVMDQTHRIDEIAFDKTGTLT
VGHPEVSAIEVLNGPKDEIIKLAAQIERQSNHPLAQAIAKLNKQKPASIKVETVKGKGIIAILNNQKYYLGNQDLIVENT
RTNAKLDKTINHLSQLGNSIVAFANEDQSQLAVFGIKDQLRPEANDALTRLKELGVKKLVMLSGDNQETAERIAAKLSID
EVHGQMLPQDKAAFVKKERAKGHHIAFIGDGINDSPALANANVAIAVGSGTDVAIEVSDIVLVKNDLRKIAYALGLSKKT
ILNMNENIVMALLTVLLLFIGLFAGYVEMASGMFIHEFSILIVILNGMRLIKFQQKIDDHQVYNQQNNVALDM
>SEQF1778_EEI65784.1 heavy metal-associated domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKVMMKLSGMTCPSCLSKIERAVGSLDGTDQIKVLFNAGKLKFTLDPDKTKTVDVKTAIEKMGYEVQGIKEKELN
>SEQF1778_EEI65785.1 hypothetical protein HMPREF0534_0892 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNAEEKYQAELKQSDLDHHQPTAAAMTGHIISNLLIHSLKINQANLFAKGSASLFLAEKAAGWIAYERQEFDQLNHLLVN
NGESIPTITAQFKEYTMLEEDGSSKYLTGDKQLFALVKDFDTQTLFITKAIALANNESWLELSANLTNLMAWIKEQIRVT
QDFLGHELKEGLYVEDDDDDF
>SEQF1778_EEI65786.1 cyclic nucleotide-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLMADLCVNLVPLFNALPQDEKMQIEKLVQHKNYQKGEVIIDPTINDNLVIVADGNAKQYTLDEDGYENVLQILHTGDY
IGEDWLFGQKNINNYVEATEHSEICLLKRQDLLKLMHKQPELSIRLLELNIVKVSEMQKQIHLLALPKVEDRLLKYLQTY
ADEIGKNNFTLPLKMKDLALYLGTTPETLSRKFALLEKQGQLKRQLRRIELFEN
>SEQF1778_EEI65787.1 uracil-DNA glycosylase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQSEFQKIFQEIQVDPDNESFTKQGIKPLYYASSSARINIIGQAPGRIAQEKMKFWDDPSGDRLRTWLGVSRDVFYNSGM
IAILPMDFYYPGKGKSGDLPPRKGFAQNWHPQLLKLMPDIQLTILVGAYATRSYLHLGYKDRLTDIVRNYQQYLPDYFPI
VHPSPRNKIWEAKNPWFEEQVIPDLQRRIQIILNN
>SEQF1778_EEI65788.1 hypothetical protein HMPREF0534_0895 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIQMQKLGIIGGIGPEATMNYYSAIIKRYQERIGTDKELPRITIESINMYHMFRLLDAQQYDKVAGYVGAAANNLLKAGC
DFGLMCGNTPHLLFDQIQARTDLPLLSIVETAVAAAQQLHLQRLALLDTKFTMQSDFFIKPF
>SEQF1778_EEI65789.1 hypothetical protein HMPREF0534_0896 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTIINKMVQKDHLDGAVLGCTELPLILGQEDFKNIQVFDIAQVQIKAAVDQLLKKLK
>SEQF1778_EEI65790.1 hypothetical protein HMPREF0534_0897 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIRNIKEPLLKAATLDAINQLIESHELAGKQIKANIMKIVKNSKGPTIEELDKRLEEAQLKLIQAANQHQHCNDLTQQVM
ELREQKEKVQEIESENQVKLHNIDQVSNFVDENQGGIQEFDPQLVRRLIEKITIFQRYMEFTFKDGEVIKVNT
>SEQF1778_EEI65791.1 recombinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTMKQIAELLKADGVLTGGKKTNWHSSGIALILKNEKYMGDALLQKTYTVDFLTKKRVKNNGIMPQYYVENDHAAIIPRS
VFMQVQNLIRRRHNGITTKNGKHRRINSKYCFSQRVYCGKCGDIFQRNM
>SEQF1778_EEI65792.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKVRIIPAHQQRGNSINRSPDEPQSERLRVAAYCRVSTELDEQANSYETQISHYKALIQKDPSWEFAGIFADDGISGTN
TKKRDQFNKMIRACKAGKIDLIVTKSISRFARNTIDCLKYIRDLKAINVAIFFEKENINTIDAKGEVLITIMASLAQQES
ESLSQNVKLGLQYRYQQGKVLINHNHLSLSRLHQG
>SEQF1778_EEI65793.1 hypothetical protein HMPREF0534_0900 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMNKLIFSRKFLLSPLVQELKEHFNDPDGELGRLTNQIKANDQKAETLMNLVKEGLIDKGLYINQTAELEQSTHQCQQQI
KQINSNNTDNANNLEDFRDLLR
>SEQF1778_EEI65794.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTITKINSYQRDVKQLRVAAYCRVSTDNVEQLESLENQRQHYQEYINRHPNWQLVRVYFDEGISGTKLNHRNALKELLV
DCHNQRIDLVITKSISRLSRNTTDCLKIVRELQQLNIPIYFEKERINTGEMASELFLSILSSIAQDESNSTAGNLR
>SEQF1778_EEI65795.1 hypothetical protein HMPREF0534_0902 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDCGLQAFFVAMVYFLALTGLSVEVITMTKQVKTVTHQPLMPIKTDTTQQQLLDELHYQQSRQVITKLLNKGLISENEFK
QIDQLNQQSFPPLIEPENVDTSIIQS
>SEQF1778_EEI65796.1 holin family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLAGFRGLTRKVLILVLVGIANVLDIYLLKNGSAIRTATIFFYISNEGISLLENASRLGLPVPDKLKSVLQQLHNKDNQ
Q
>SEQF1778_EEI65797.1 putative phage head-tail adaptor [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQKQNNRVSKIADIGELNNRITLMKEKYVGENPNTGMSMYKNVKLGDVWAKVSSLHGQECHTAVTVKLEKQLSFIIRYRP
DVDEDTNIWFEGRGYDIGFIDDVKYGHEFMELKAEYKRGITLED
>SEQF1778_EEI65798.1 hypothetical protein HMPREF0534_0905 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAAITLAETKACLRVDNTVEDDLITKLIGSATATVENVLRQPLSAFGPLPDNIHTAILYTIAYLYEYRETADFDAMIKFL
RAILAPYRKEEF
>SEQF1778_EEI65799.1 phage major capsid protein, HK97 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPINKEIDRRHKQAEIEAALNQPTSKALTNSPTAGKLPKSQDAYAQNFWQMMRGHAVVDALKEGTDPDGGFLVPDEFENQ
LIQKLQKANVLRTISHVIQTNSGEHKIPVVASEGTAAWLEEEAAYTESNTQFSQVSLGAHKLGTLIKVSEELLNDSAFDL
MSYISDEFGRRLGNAEEQAFLTGNSTGQPTGILTDTNGASAGSTAAKADTLTFDDLIDLFYSLKAPYRQNAVFLMNDDTV
KAIRKMKDKNDQYIWQPSVQAGQPDRILNCPVYTSPFMPTLAAANKPVLFGDFNYYWIADRQGRTFKRLNELYAVTGQVG
FLGSQRVDGKVVLPEAIKTLSMAAK
>SEQF1778_EEI65800.1 redoxin family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEITINGEKRQLVGNPPAVGDEFPHFKVFDKNGDKVKTRQLLGKITLLSVVPDINTPVCSIQTQRFNSTMDQFPEVNFLT
ISTNTTEDQQKWCAAEGVKNMELVSDKEESFGYESKLLIPDEGILARSVWILDPDGKVVYRQIVTELTDEPDYEKAIAEL
KKLI
>SEQF1778_EEI65801.1 hydrolase, NUDIX family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILDCAIIFCEVKEMADKVVAHPLITIANIIWSFNPLTHLPQVLLVKRAYPPFEGHWALPETLLWRDESADAACIRLIKD
KIGVRLSNSATEQLATFTDPDRVSRGRALAIAYMTFLPTMPQLRAGYGATEVGWFSLNFDHGKFILQNGDLVLSLAAGPA
LAFDHHQIINTAIVRIKNKLDYQPTILQILGPTFTLRQAREVYATFRQTTVDQIDNSNFKKTHQKLFKEVGTAATKRSGR
PPKLFKLVLPCV
>SEQF1778_EEI65802.1 nicotinate phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKHELLTDMYEFSMANGYYQTLPRDKQARFDVFYRKAPDDGSFVISAGLMQVIDEVKNWHFSTGDIAYLRSLNHFSDDFL
FYLTSAHNRCSIKAIPEGTPVFPQEPILSISGPLIDVQLLETLILNIINHQSLIATKAWQITSVTGGRPVMEFGARRAQG
PDAAIYGARAAIIGGCSSTSNVLAAKLFNLPAAGTMAHAWIESFPDELTAFRAWAKIYPDNAALLVDTYDVVNSGVPNAI
KVFKELRAAGHEPVGIRIDSGDIAQLATKARKMMDEAGFTNAKITASNALDAHIVKSLLDEGAPLDNFGIGERLITSSSS
PVLSVVYKMSALENDGKWVPKIKISNSREKITLPGNKQIYRLYDKHNPQHAVADVIALADEQIGTEIAAINADIHVTRNK
VILTDFIAKPLLKQVLTLKKAAPIETDTFAIQHFAQTELAQLPAATKRLLNPDRFPVYLTKRLADLQQKLVDEAQK
>SEQF1778_EEI65803.1 isochorismatase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRHKNKELAMTKALLIIDYTNDFVADNGALTCGKPAQELEDYLVQLANRFYQNGDYVIFPTDAHCRDRFSPEAKLFPPHN
VVGTPGQQLYGKVNDWFEQHQASDRVYQFNKNRYSSFQNTNLDNYLRERKIDNLWIAGVCTDICVLHTAIAAYNLNYQIT
IPVKGVTTFTKHGQEWALDHFKNSLGATLV
>SEQF1778_EEI65804.1 IstB-like ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTAYTELENNLEALKLNAIREYLPNYLEGDKQLSLAEILKQLTDKELNYRKQRSARMSIHTAHFPYQKEIKDFDFNFQPS
VDKEKITNLMSMEFVENARNVLFIGSSGVGKTHLATGLGVEACKNHLSTYFVNCHELIERLKLAYQENRLEPMLKNYLRY
KLLIIDEIGYLPIDNLGSNLFFQLISRRYEKKSIIVTTNIPLSKWGQTFSNPTIANAILDRLVHHSEIFKISGKSYRMKD
YTEQHTKQHLNR
>SEQF1778_EEI65805.1 integrase core domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
RRKSKLDPYRNIIDEKVKNSCSATSIFYFIKEMGYTGGISILRDYCHQIKVKKQTTPVVRIQTAPGQSAQVDWKEDFVLH
TRKGTPIKFSIFLYVLGYSRKKYLNFVFDRKQDTLFSSLVGAFEFMNGVPKEIVFDNMKTAVDHARSSFTKVVWNEKLLE
FARTAGFTPKSCKPFRPQTKGKVESLARTIERLRVYDYEFDNVNDLAQLIHKLNVQLNNELSQATGEKPNTLWTKEKEYL
SPFDKNLLLSVIDRDQTRKVSNESMITYKGNKYSVPVKYIGKEVTVNITDSLLLVSFDGRLLRKHLLSNQKINYHHDDLQ
EVLSNGVYHDLAEEELEKQVQRNLTMFDNLRG
>SEQF1778_EEI65806.1 DNA-dependent DNA polymerase, family A, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQISIDIETYSSTNLNQTGVYRYADSDDFELLLFGYATDFGPVKVVDLTQGEKIPPQIIEVLDNPNIIKSAFNAQFERV
CLSRFVGHRLKPTGWHCSRVWSATLGLPLSLRDIGSVLGLPRQKITAGKELVRYFCTPCKPTKANQNRTRNFPYHAPDKW
QQFKQYNQRDVEVEMEITQKLECFPVPQNEWENYWMDQDINDRGIRIDQQLVNNAIKCQNVFHDQYLQTAKELTGLANPN
SPLQLKDWLQQQGIKTNSLSKASVAQLLQTTTGTVHQVLALRQLLSKSSVKKYQAMQKAMCQDGRVHGLLQFYGANRTGR
WAGRLVQVQNLPRNSMPDLEEARELVKQGNVPALAMLYDSVPDVLSQLIRTAFIPSKNHHFYVADFSAVEARVIAWLSNE
KWRQESFAKNEDIYCASASQMFGVPVVKHGINGELRQKGKIAELALGYG
>SEQF1778_EEI65807.1 hypothetical protein HMPREF0534_0862 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLRRKNNMSQQTKVVTGINTRLSYANIWEPKSINGGKEKYSVSLIIPKSDQKTVTAIEKAIDASIQEGIGKFGGKKPNK
ATLKLPLRDGDVERDDAAYQDSYFINANSITAPQIVDKHVQPILDRDEVYSGCYARVSINFYAFNTNGNRGIACGLGNIQ
KIRDGEPLGGHASANDDFTAIDDSNDDDFLA
>SEQF1778_EEI65808.1 hypothetical protein HMPREF0534_0863 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSPKHHALLSASSANRWLSAPPLPRLEQYFPHSTSSAAAEGTAAHALGEYKIHRLLGDKFKRPTSDYQSDEMENLTDDY
ASYVLEQYHKAKEYAPDATIRVEQKLDFSKYVPEGFGTGDCVIVSDHLLHIIDFKYGKGVRVEAQNNPQMKLYAVGALEM
FGSLYNVDEVETTIFQPRMANISTWTINAKELMHWANSELKEKAELAFAGKGTVHYGPWCQFSACNAVLRARFDYHHKLT
RFQLRSPNLLTDSEVTEVLEHIDDLNRWAHEIKDYAADLAINHGKQWPGYKIVEGRSVRHYKDEAAVAKIAEANGYHNIY
QKKLLPITKLEKQLGKKKFAELFSQEIVKPAGKPTLVPNSDRRQSIGKSNPQDEFKEEK
>SEQF1778_EEI65809.1 hypothetical protein HMPREF0534_0864 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSAMNDLDLQLKEAENQLDQAKDIIQSIRKLLSSNQDGEQRNDEQPKRDPVEDKVTVRKMLAKKSTEGYTAQVKELLHKF
GAEKLSDVDPKDYEDLYYSAEGLGQ
>SEQF1778_EEI65810.1 hypothetical protein HMPREF0534_0865 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANKISISVAKHPRQDDVVSMRNVTIRERLLRLLLGKTHHLMVIAPGKDVQQLQINEVKEDSYERNE
>SEQF1778_EEI65811.1 RNA polymerase sigma factor, sigma-70 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKYYDDRHQLNMEISDAKDGSMHIKLHQPTGVKEITVTEAKGKEIIELNRIEYNDNHRETRRHVSLEAYDPYGVLVKND
ADPLQEVINKEEMDKLHQSISQLTPAQRKLLMKKFWDGMKQIDIAKDEGVSKMAITKRVQTIKRRLKKILQK
>SEQF1778_EEI65812.1 hypothetical protein HMPREF0534_0867 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANNEFRILIDSLRIAMSEDDGHSIEGSINIVLGKYTNNWKENTYSSQNLKKLYYKGLNYNAAKKIKGAVINEESFRKYI
DSFSSSDKESMAAQLQTVNKDVTQLEANAVPYFCVNLLNELIEEAITGQQKKPTKSGPNGYLKKTVSDDSFSSVFTEVAT
KELPLIKNSNAIHAFILKPDFFPFSYKNLEDLILKNITSYASARGIEKNDVAGIKATRILRYYMHSGVPQNLLGEMLTYI
FLEHIDDAKKIYTRAEISANSRTINSEGIYLKDNKGKSQLILGASQLNDNLQDAIKNVVSELKEFRNNRSQSLVMPIDLI
DSSILREQYSEEESKAILKILVPTENKIDEVAAYGLFIGYKFAPDDNLKNCSTDEAKLKCHKIVESDLHQVIAQLDDEIR
LNEWQRSSFYVYMLPLISASTDGNTIMSELIG
>SEQF1778_EEI65813.1 helicase C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVKKNKSLAEYLYDNLQQNHYLRKLVKQLFTQYAYFLFQAKWSLDKKEKTDLLKFADLLSKAQSNNGSSECKNLALKIIT
MLQEMYPEDPNVDIVRNTVLSSLKNYLPRENHGYIKINTVDFLWDEVIDNYNKNQRKIPGQENQTFIGDQDKIFNSLENS
INSFSAPTSMGKTYLMKKFIEYKVKMGEELNLAITVPSKALITEVRSSLLTDLVDNLSEHSYRIISRAEEYAFDYENRNY
IFVMTPERLSNLLLDNGDLRLDYLFIDESQKATEMDDRSIYYYEIIDKVQKWKQKPRITFASPLIPNPDVFLQLIDGSIK
NNIRVDESPVTQTKFIIDRYNKELSVYNDQTKKKQHLCEFTENAIPHIVKMITDVMKDKTQSLIYYGSKRDVMSDAIVFS
RQFPTIESKELDELAAYISRKINPKYVLVDLVKKGIAFHIGELPIDVRTKIEEAYRKGILRTVFCTSTLLEGVNLPADNI
FVTSLGNGKKKLSQLEFLNLIGRVGRLGHSMIGNVFLITGEKEKSHSNLSSYLKYLSKKISKEHLSVEKALKPKQVAAIK
KSLSAGDLKLSAVTDKRNYDLLRKISLIYIKELNHNQEGFTRKQFKKKISDDDETEIFTALHSRYPDESQDDVNFSADQS
NLLTRAISDEQIKGFPQIFNDENKLNVEETYQFFLKLAHIFNWNLYERKFVHADSDENIQHQTLEDYAKLTLMWISGYSL
KQICDYVIAIRERLDFQFLDRLDQSRKLVGNINWDTIAINITMNQLNKLNFVLGKYFLKVSKELSANSIPLDNNWYQYLE
YGTSSDLRIWLQQNGYSRESSQYIENKADELIVNGPFGPLISNRIDDANDPDVINETKEIKVNVPEIFN
>SEQF1778_EEI65814.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEISFSYNKLWKLLIDRGMKKKDLQQASGVSAASIAKLGRNGNVTTEVLLKVCKALDCDISDIMEIVRK
>SEQF1778_EEI65815.1 hypothetical protein HMPREF0534_0870 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKEEISLFDDQKFETDHKKFELKAIGDDSHLIKSKDRVQHHGEVFTPKWMVEKMLSEPAIQEKLHDLHATFFEPSAGEG
AFLKGILHQKLSYVDQISNKITWKNNALWALMSIYAIELLQDNLIKAKRAMIDVFINHYQTFMQKALSSNTDLYKSARYI
IDVNIVQGNTLTFKNSENKLIEFREWIPSGNKVKQNTFTYKSLFNNDDMDDVNANEGQLSLFDDFENGDSKQNQPVQLTK
VYEV
>SEQF1778_EEI65816.1 Eco57I restriction endonuclease, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANKKFKFDVVIGNPPYQEEVEGTSDKQIFPYFMDQAYKIGEKVELITPAKFLSNAG
>SEQF1778_EEI65817.1 hypothetical protein HMPREF0534_0858, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHFTLSTAANSGQASNTIYPHQQAITNAQELEQAVHYDHVCGQFKNNQRTIANFIKADCLIMDCDNDHSDDPTTWIKPAN
IANYFDDVSYAITLSRNNMKAKHHKAPRPKFHVYFPITEITDAKTYTELKHEIQEYFPYFDDNALDAARFVFGVPSTKAI
WHEGSQTVDKFMMVQRYFAQQNVGAIPEGQRNATLSHFAGRIIMRLGNTDEARQAFQEEAAKCDPPLSKQELKNIWHSAT
KFGQRMASQEGYIPPEKYNQPNDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDK
QL
>SEQF1778_EEI65818.1 hypothetical protein HMPREF0534_0859 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGSESMSEATIAITKLRQDKLNPHYRPMIFVIAPFTEVVKSDAKSTMTVRSYCRFIYQHGGIPVCPQLYLPQFINMHHS
REFQVAAFINIVLLTKCAEAWSFGKPTHDMRYFIRLAKRKNKNIRYFNNEMEAN
>SEQF1778_EEI65819.1 hypothetical protein HMPREF0534_0860, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
NTVKKWDRIETYGAKLVENIVQATSRDLLAEAMRRLEATGNTVVMHIHDEAVIDAPFNRSLDTMVQLMTKVPDWANGLIL
NAAGFVSDFYKKD
>SEQF1778_EEI65820.1 D5 N-terminal like protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
DAQLRVTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKERSTRGINGILTNSRPKLVKEIN
DFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCVPGNQGASLWQEALTTFFCGDQALINYVQEIVGLVAIGQV
YLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADALTTGVRRNVKPEMAEVKGKRLI
>SEQF1778_EEI65821.1 SNF2 domain family protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
VGLTGTPSSNGLMDLWAEFRVLDMGQRLGRFISSYRMNYFDPDKRNMYQVFTYKPKPGAEQSIYRAIDDITISMKSKDYL
NLPPLTMNTVPVKMSNSEQAIYDELNAQLVVSTQGKQIDALNAASLSNKLCQMANGCVYDDQQQIVQIHQRKLDALEDLV
EAANGKPVLVAYWFKHDLIQIKSRFKVREIKTPRDIQDWNAGKIPLALIHPASAGHGLNLQAGG
>SEQF1778_EEI65822.1 cytochrome b5-like Heme/Steroid binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEKTFTTTKLAEFDGRNGHPAYVAVKGVVYDVSNVPQWKDGKHHGNLAGRDLTSVMPRSIHLESVLEGIPVVGKLVD
>SEQF1778_EEI65823.1 Cof-like hydrolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDQHLIALDLDGTTLNNQSKLTNETIITLRALARDGHIVSIITGRPYRIAKHIYDEIGIKTPMVNFNGALTHIPHEHWDK
EYDVELTRELALDLLAHRKELGIKTITVENKHHVWANQASNDLPEFLPNKLRDDQILTAANLTGNPIAMTIQYEPEHQEE
IIKAVNEKYGDFVEPRVWGGPYNILELIHRGTHKESGMFYIAKQYQINRQNIIAFGDEHNDLEMLDAAGRGVAMHNAISE
LKSIANDVTPIDNEHNGLAKYLQAYFKVTI
>SEQF1778_EEI65824.1 NOL1/NOP2/sun family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLPNEFVTKYKKLMGAEADEFLSALAQSSYSGFRENPLKNGQPVATIEKATGKVPYVPTGYYGQVNGKSLDHVTGWVYS
QEPSAMFVGEVVNPQAGERVLDLCAAPGGKTTHLIAKMNNQGLLVANEIFPKRAKILAENLERWGAKNAVVTSESPADLE
KQFPQYFDRILVDAPCSGEGMFRKEPAGIEYWSPEYSAECANRQQKILASAMKMLKPGGTLVYSTCTFAPEEDEQTISWL
LGDYPALKLVPIEKAVGMDDGRPEWADGNEELKKTVRLFPHHLKGEGHFIAKLVNGKPESTNEKRKKKNKRKKQSIVKPD
KEQIKLFNQFATSVFPDYQPHQLILFGDQLYDLPLEEDKIEGLNVLRPGLHLGTFKKNRFEPALAWALASLPQEAKRVID
LNREQWHQYVHGDVINIDADLPNGWYLLVCDKHTAGFGKLVGKTIKNFYPKGLRF
>SEQF1778_EEI65825.1 SPFH/Band 7/PHB domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEKAAFHVNGYLGLLGAIIIGLISLWLMFVGFTRNFPVVLTIGIILFLIVILFSTSLTIIQPNEAKVLTFFGNYIGTIR
DAGLFMTVPFTNKETVSLRVCNFNSQILKVNDSKGNPVEIAAVIVYKVVDTAKALFSVDDYEQFVQIQSESAVRHVASEY
PYDSFEDQDAITLRGNPTEVSERLTAELQERLNVAGVKIIETRLTHLAYATEIASAMLQKQQSSAILSARKIIVEGAVSI
TEEAIERLSKEANLDLTDEQRLQIINNIMVAIISERGTQPVINTGTQG
>SEQF1778_EEI65826.1 hypothetical protein HMPREF0534_0849 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYLTILMAERVGLIIILAFLLVSVPLFRRLLFNQTISANS
>SEQF1778_EEI65827.1 LytS/YhcK-type transmembrane receptor domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTGIEIDANNQLHNKIILTAISTNDSIVNARILAVSVAEIIGGPWVGSLVGLVAGVHRIIQGAPLQGWFYVPSSVLIGAL
SGFLYHDRKSYFKVMTP
>SEQF1778_EEI65828.1 L-lactate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATEEHQKVVLIGDGVVGSAYAFSVIQQGLAEELVIINKSNERSVGDALDLEDTTPFTAPVKVKAGSYQDCKDADIVTIC
AGAVQKPGEIRLKLVERNLKIMKEIVQEVVNTGFNGIFLIAANPVDILTYAVQKISGFPAHKVIGSGTSLDSARLRVALG
KRLAIDPRDVHVDMLAEYGDSEFAAYSCGTIGGTPLMDYVLANGLTKQELLKLEEQVRNKAYEIIGRKGATYYGVATALA
RITKAILYDQSTVLPVSAYLDGEYGEKDIYLGTPAVIDKDGIQRVVELPLDSREQEALINSASVLRETTANGMTKAGLLN
YLWK
>SEQF1778_EEI65829.1 ROK family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRFLIMLLGSIEAGGTKFVCAVGDENFNEIDKKIIPTTTPEETLGASIEFFKQYPELAALSIASFGPIDTNPASEKYGYI
TDTPKVKWQNCNFVGTMTEALNIPVYWTTDVNGSVYGEYVNLKDKYDNPALVYYTLGTGVGAGAIQNGRFIGGISTPEMG
HVRLQRHPADLNFTGICPYHHDCLEGLVAGPTFKARLGISGEDVPDNHPVWDIMAYYVAQAAVQVTAILRPQKIIFGGSV
SRPAFLERVRKQFAMLWNDYLPVGSLDEYIVNPSVPGNGSATLGNFALAKHLIETNK
>SEQF1778_EEI65830.1 transcriptional regulator, LacI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTGIRKIAREAGVSPASVSRVLSNDSSFSVSEHTRARIKEVAAKYNYHPHLNRTVTPPPTPRSILVLTTHSLETEAHDPY
FIQVHDGIIQEASKQNIQIKAFVRFPNKAFQFTDAQKYDGVIVAGVFTQEFYANLAKNNPHIVLIDDYRYLPAYDIIRNS
YFEATQIVLDQLLENGLNKIAFIGGNIHPMNNNGETTDSYQDIRAKAYLMWTRLHNISPLIVLNGWTPKDGFDSMNTLLK
DNFQATLIASDQLTIGAYRALKQHQLKVPQDLQIISYNDSDIAEYLVPSLSSINPASFSMGTIAVQRLVHRLNNPNEIPI
HINLPAKATWRESSEINLN
>SEQF1778_EEI65831.1 alpha-galactosidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITFDEQQRVFHLKNKEISYLFSIEEGNILSHLYFGPAIRNYHGERRYPRVDRGFSGNLPGSMDRTYSKDDLLQEYSGNN
TGDYRVPAIIIKTENGSRLTDFRYKSYKILPGKPKLAGLPASYVKSDKEAETLEVTLVDETIGAQLILSYTIYNERPVIT
RNARLVNTSNQELRIEKIASMQLDLTKHDYDVISVPGQYALERQPERQELRRGITEFSSRRNSSSHHMNPFVALVDKNTD
EFQGNALGVLLVYSGNHQFTLEKDQIDQIRLITGINDYNFEWVLEPGKDFQTPEAIMGFSQCGLNGMSQVFHKLLRDRVA
RGKYQYADRPIVINNWEATFFDFDDKKLDQIIDEAKPLGIEMFVLDDGWFGHRNDDNSSLGDWFVNQDKLTGGLKRVADR
THEHCMKFGLWFEPEMISVDSKLYKEHPDYALHEPNRGMTLSRNQLVLDFSRKEVVDNIYNQMCLILDKVPLDYIKWDFN
RNLTEVFSSAADAEHQGEVSHRYVLGLYDLMERLVTRYPNILFEGCSGGGGRFDAGILYYMPQSWPSDDTDAVERLKIQY
GTSLTYPISSMTAHVSVSPNQQTGRSTSFKMRGDVAMSGVFGYELDLADLTEEDRQMVKEQIKFYKAHRHLIQYGDFIRL
ESPFDSNTVAWEFVSPDKSEALLFMFKQLHTNRFEINNTKMAGLDPTIDYHDEMTDKTYGGDELMNVGLFRDPTRTGDFT
SEVHYFKGK
>SEQF1778_EEI65832.1 hypothetical protein HMPREF0534_0855, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
RYSRRTDKYGFERDFKLYRADKHQLSEQLDELAKTPSGRQRYMQVNPMWNYYKAKVKATLSSDEGKAIYRRRKFDVEPVF
GHMKRDFGIRRTHLRGQRAVENDIGLALIALNLTKFGQSISRLATNFINNLKSGL
>SEQF1778_EEI65833.1 ferrous iron transport protein B, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTVALIGNPNTGKTTLFNSLTDKYAYVGNWTGVTVEKKQGTLKGTDIIIIDLPGVYSLDPLTKDEAVVTNYLMHNQPNM
VLNITNASQLKRNLLLTIEVLELGYPVVLVLNMIDDLRRSGYDYDLDLLEKRLGCKVMTTNARGHQGIDQLRKETINCNS
LHPSQLDLDYPPMIKQAIRQASTALESDYSFAPQVARWLAIQFISKNKVIRKFAREKELTPLLSQQKYYDAQKFADQIFE
VRLQFIEDTLNQARHPLNNGGQVEITSRIDKIVTNPILGLPIFVLIFFVMFKMSFDWVGTPLSDMLDQFISGPVSTTTDQ
TLASLGAIPALRSLVVNGIIAGVGGVLAFIPQIFMLFACISLLEDSGYMARAALVTDRVMQMIGLNGKSFIPLIIGFGCN
VTGIMAARTIEQPKERLITTLIMPFMSCSARLPIYSLFVAAFFPRHQALIVLSVYFLGIVVALAMAKFYQVIFKVKESSV
FVVELPHYHLPRLDIIWHGTWDKGKGFIKKAGTIIFAGTVLIWILSSFGPSGFVTNSANSFAADLGHILVPIFKPIGIDQ
WQPISALFTG
>SEQF1778_EEI65834.1 hypothetical protein HMPREF0534_0836 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIQQNYILHSFDCLNTATAARLHDMGLCEGCPIKVVQKYPFHGPVIIENDHQRIGLRYTVFTMLTGAE
>SEQF1778_EEI65835.1 FeS assembly ATPase SufC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFMATLEIKDLHVSVKDEESKEEKEILKGVNLKMKTGEIHAIMGPNGTGKSTLSQTIMGHPNYHVTKGDILLDGESIVD
MPVDERARKGLFLAMQYPAEIQGVTNAEFLRAAINARRPEDDQISVMDFIKKLDKNLELLDMSQSMTERYLNEGFSGGEK
KRNEILQLLMIEPSFAILDEIDSGLDIDALKVVSKGVNSMRGDNFGSLIITHYQRLLNYIVPDTVHVMMGGRIVKTGGPD
LAKKLEDEGYAGLRDELGLDIKLVDDED
>SEQF1778_EEI65836.1 FeS assembly protein SufD [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTELNSAKEQIIAASKANNEPQQLIDRRLSAWELMEKLRLPRMQRFDFRTWPLIAERPLKWVESDADLVKKPVTDDEVIK
VTQFGQTLLHVNLPQKLQDQGVILTDIFTAAREYPELFNKYFMTAINPEENLLTAYHLAYLNAGLFLYIPKNVEIEKPIE
AEIIQDSTQDEPLISHILVIADRGSRIKFIQHLTTVGDHENAANMMIELMAQENSEIDFSSLDEFGPHTHTYFKRRADIG
KDAHVEWAVGLMNDGATVGDMDSELLGDGGYANSKMIAVTTRDQEVGVNNRVTNHGKHTTGLINQRGVILEKSELIFNGI
GQIIHGAHGAKADQQNRVLIMSDQARGDANPILLIDENDVEAGHAASVGPVDQQQMYYLMSRGIPRAQAERMVIRGFLGA
VLSAIPAADVRNKLITILERKLADGQQYE
>SEQF1778_EEI65837.1 cysteine desulfurase, SufS subfamily [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNNTNDYLADFPALNQRVNDERLAYLDNAATVQRPRQVIQALINFYEQDNANVHRGVHTLAERATKDYEEARKKVQKFI
NASSANEIIFTKGCTDGLNLVAATYGEQNIQPGDEIVISIMEHHSNLIPWQQLAKEKGATLKYIELTPDGELDLADAKKK
ITDKTKIVAVAHASNVLGTVTPLKELATIAHQHGAIVVGDGAQAVPHMPVDVQDLDVDFYAFSGHKMMSPMGIGVLYGKE
NLLRAMSPYQYGGEMINDVHRNESTWADIPFKFEAGTQNIAGAVGLGAAIDYLNGIGMDRIVQKEQELVNYVLPKLIAIP
DVEVYGPQSPAKHTGVISFNIKGLHPHDVATALDMDGVAVRAGHHCAQPLMEDLGVTATARASFYFYNTKEDADQLINAI
KETKEFFNIGTI
>SEQF1778_EEI65838.1 SUF system FeS assembly protein, NifU family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLSKLSGLYREVILDHADHPHNKGELATTTNAMTLHNPTCGDTINLQVEVEDNKIKNIAYTGDGCTISQASASMMTDAV
KGKTTEKALAMAKTFSDMAIGKEHSEADLDQLGDARILTSIMEFPARIKCATLSWWALQRALLKDSEEEENNE
>SEQF1778_EEI65839.1 FeS assembly protein SufB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNDAASIINNNEQYEYGFHDNVEPEYSTGRGLTEETVRKISAAKHEPKWMLDYRLKAYKIYKELPMPKFGPDLSELDLK
NMLYYQKMTDKKFRDWDDVPEDLKRTFDRLGVPEAERKYLAGSSAQYESEVVYHNMKNEFEKLGIIFTDTDTALKEYPEL
FKKWFGKLVQPTDNKFAALNAAVWSGGSFIYVPKGVKTKTPIQSYFRLNAENSGQFERTLIIVDEGASVDYVEGCTAPNY
SSDSLHAAVVEVNVCKDAYCRYTTIQNWSDNVYSLETKRAAAAENATMEWVDGNLGSKVTMKYPSVYLNGEGARGTMLSI
AVASNGIHQDSGARMIHNAKNTSSSIVSKSIAKTGGSTDYRGTVRFGKHSDGSKAHVECDTIIMDDQSSSDTIPYNEIDN
AHVAMEHEAKVSKISEEQLYYLMSRGISEAKATEMIIMGFVEPFTKQLPMEYAVELNRLISFEMEGSIG
>SEQF1778_EEI65840.1 hypothetical protein HMPREF0534_0842 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADEKDTPFSPIENKVMDALEEVIDPELGIDLVNLGLIYDVKVDDNGECTVTMTLTTMGCPLGDILNRDITKAVTSVEGV
TKCNINLVWEPVWDLSRMSRFAKIALGIHG
>SEQF1778_EEI65841.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDIKRFVYQRKRLGYSQVALSKGICTQSTLSKFESNGQVPSLTILAQLCERLGLTIDDLSKDNTSSIRYIRSLLDQIELA
LMIEHFPQAVSNLKKIRLEDLKSPQDRMQYYYLKGMIYTLTNNNASTSLFNFTKILDELDEQHRTIFSPLAYLGSGILYA
RQNLMEHADFFFSKVIAFLRSKADEDLAGVDRNYYLRIVTMMYYAAEYHSLNKRLEVSNQVLEATTKICASNHVTYFLPR
IKLLEANNTIELGENSKKIRQLLTEAEVFARFNKNNVVEVQVAALLNNFDKTISNK
>SEQF1778_EEI65842.1 oxygen regulatory protein NreC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKAGLLMYRVLVADNYPIIRMAVKNLVEQLDNFKVIAEETTGIDASLRVEQGDIDIIIMDLAMPPGENGLITIKRIHEHF
PNTKIIIFSSRNEPQYINQAIYNGANSYIFKSSSPKELVHALRHAINGEKYLDNNIMVTKKDLLVIKGGSPHFDLGNYIA
LSKREQEILPLIVLGYTNKEIAIKMFISPKTVEAHKTKIMQKLNLASHAELLHYAVKHQLVDL
>SEQF1778_EEI65843.1 hypothetical protein HMPREF0534_0833 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLIINVIIIAAIIALAFYLLVKTFQRGKQGKCAACDYDCEIKKLAKNKK
>SEQF1778_EEI65844.1 hypothetical protein HMPREF0534_0834 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMVMFHTSSKAFLIASLGQFMTPLSAYTLLVFILLYAPCFATLATIKQETGSTKWMLYSVASSLVVAYGLAFIIFQVGRL
FIG
>SEQF1778_EEI65845.1 Inosine-uridine preferring nucleoside hydrolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKKIIFDCDPGHDDALALTMAVASPKIDVLAVTTSAGNQTPDKTLNNAMRMLTLLHRKDIPVAQGNQTPLVEPLETAPE
VHGETGLDGADLPDPDFKVQPIPAIELIAKTLRKSDEKVTLVVTGPMTNAALFLRVYPDLAKEKIDQIVFMGGAMGLGNW
RPSVEFNIFVDPEAAKVVMNFGLPLVMAPLNVTHKAQIMKDEIEQIGQIDNPVAQAFHGLLNFFEQYHENPKWGFKGAPL
HDPCTIAWLIDPTMFGTDKMNVDVETQGDLTRGETVCDYYQLTDKPQNTKVLLDIDREKFIQLIMDTLQSFSN
>SEQF1778_EEI65846.1 Ion channel [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHKKFTYIVYQIIMAILAVISIGMLIAYYAKRINIDAYPYNMIDNGIWLAFFTDYVIRLIISPNKREFVKDNIFDLLSII
PASSLFFLFRIGQIGRTFQMLKLMRIMRLVGFTGRLGVFFERNELLYYLYITIAVIMIAAAMFCISEKVSYETALWWAIT
TATTIGYGDVIPKTGIGRAAAIVLMLLGIGFIGMLTSTITEFFAKKDERKISAQLVKIQHENRQLKAELDEIKRLIQKNN
H
>SEQF1778_EEI65847.1 hypothetical protein HMPREF0534_0827 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDFSFKKRPVKRLYGEYTILFIFLALCIFGTYLVTGHTFILSKDALNQHLPLLAKYREALISFFHHPRLNFWSWQMGLGS
DTFQVYSYYTIGDVFSYLALLFPAAKITLAYQVINIIRMYCVGLAFVYFAQHFKFRNSVILMGATTYLVNSFLLYACIAQ
PFFTTPFIIFPLIVVQIERILQEGSPWPLAGAFTWMLVSNYYLAYVLGIGSFLYLVLRVGTHYRRTLNYGKALLKLSFAT
ITSVLLSAVLLVPEIIAVTNSTRTGSLFANGLKTYPLYYYLFLPKSLINGGQWYFMFWSALGIVSIGFITLVYIYSRPRK
YPLLTISLGLALIMLLIPAVGAFFNGMMSASNRWTLLVYLPLAMSVCILAENIPTLDQKTMAVLSWATGIYLIVLITTFF
FDNENDIFMPVIFLIGSLMAIWLIHLNKLTHPYRWLLAITMLNAGVNAIYAAFPYNGDFSSSMLSRGEYQAITSNRYGNL
DQDLKNNSFYRVSTISQNKIIDGPNLDNDLTSGLHNIDSYYSLQNKYLGQFNTSLQNNQYQANIPIRQADDRTIMNNFFG
VKYLFVQSNGDNATKIPAGYFLDKATDPVINYDEGQPSNPQSKDEFVPTQTMRYKTNYAFPLLYWQDNYISKKDYQSLSP
TEKERVLATGVLVDKQEKLRGMKAANLKTHVYPLKSELVSNRLNKVNPAKLTYTDSEETYQLQLPELQSKKMQQKLKGSE
LHIEFSKIKYTPFSMKEQIAYEQAHLKETVLNPGNVINQRYTHYRYWRYHVLNGSPDISFKLNVGSKFGTATIEQARQST
LSLFKHITNSTLNIGYYDGKLPTSLTFQPSKLGTYKLKYRVVAEKLDNNYYREVKTLQRHRLEDVKFKRNQVQGTIKTTR
PGVLTSSIPYSTGWSVKVNGKKTTTLRTNQAFLGVYLPAGTHHVTFSYELPGIKLGVLLSLIGLGWTILAGIITIVWERK
RK
>SEQF1778_EEI65848.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENIGNFTVAKRWGSFLLLYLGYMILFADRTVMNISLAYIGKDFHVGAVALGATASAFFLGYTLMQIPGGYLTDKFGSKL
MVIISLFTWSLMTMVTGWAWSLAALIAIRFLFGIAEGPYPAAALKRISENYDKSEKSQATSALISSNYAGAAVAPLIIVP
IIASNGWRNAFVWLGVGGFIILLAYYLVERPINSSQENGLVRPKIEWKKIDHRVWAFVVIGLALNIITKGLETWMPVYFL
QEQGINLKNLAWLVPLPVISGGIAAFISGFVMVHLFKKHERWMISIASFLTLVFMFGLFKSTSLVGVVIFDVLIYFVKSL
AFTGIFSFIAQILSEKTYGSSIGIVNFGGQLGGFVGPLLIGWIVQAAGSYSAAFFGLVISALVAVIACLFIRKA
>SEQF1778_EEI65849.1 RNA polymerase sigma factor, sigma-70 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRFNEKDEEKYLKLINNTRRGSNKDFEELFRRYWPLVRRLWQRYNISGLELADWEQEARVVMLEVIRLYNNQGPRMFSCF
FKECLTNRIRDIQRQTQAHKRIPAGCLYALSDDFAETLTDFLHHSPDDIIYCRQSLDRLLCHCSTFERKVLVYLHTGYSI
TEIAGTLDCSKRSVQSALHRCHGKLLKVLMK
>SEQF1778_EEI65850.1 hypothetical protein HMPREF0534_0830 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLLENLDIQTQSVTANKCVITVKVSDKLKQPYGIVHGGINSVLAETAASLGANQWLADRQQDQIALGVNITTEHLIAVS
NGKLRAIAIPIKRGRRIQTWQVDIHCNDQCTSTSIVTLINQPRS
>SEQF1778_EEI65851.1 naphthoate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTVDWQPVKDYSEIIFERAGKIAKITMNRPEKMNAFTPVTIQEMIDAFTICRDDSTIGVIILTGAGDKAFSSGGDQGVR
GNGGYVGPDKIARLNVLDLQHLIRIIPKPVIAMVKGWSVGGGNILQLVCDLTIAADNAKFGQTGPKVGSFDAGYGSGYLA
RVIGHKRAKEVWFLNHFYSADEAYQMNWINKVVPLDQVESVTLDWCNEILKKSPTALRFIKAAMNADTDGLAGLQQLGGD
ATMLFYTTDEGKEGRDAFNEKRDPNFDQFPKFP
>SEQF1778_EEI65852.1 O-succinylbenzoate-CoA ligase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METQNWLLKQAATQPNQIAIDDGNERLSFAELKKQVEVLVGKIDHLNPGSRVGILATNTLMSYKLALAIMCSGRTIVWLN
WRLAGEELERQIKDSGLQLCLVENSLWRSGMTDPFKSYSAFLITSADPGELIPVFKSNWVASIMYTSGTTGKPKGVLQTF
GNHFYSAVSSALNLGLSSADKWLCVAPIFHISGFSIIMRGLIYGMTVRLVEKFRAEELERILANETVTIMSVVPFMLKKL
IQQQNKTNTHYNSAFRCMLLGGGTIDRETLEACLQRSIPVVQCYGMTETCSQIVALRSADALLKLGSVGQPLFSTQLKLS
KDGEILLKTPALTPGYLNLPDKLPSKMIDGWYRTGDIGHLDKEGYLYIDGRADEMLISGGENIFPQEVEQVYQRYPQINE
VAVVGQNDSVWGQVPVAFVVSDRRLSPTKLINYGYEHLARYKVPQHYIFVSELPKNASGKIRRFMLREKLNNE
>SEQF1778_EEI65853.1 pyridine nucleotide-disulfide oxidoreductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEVVVLGAGYAGLKTVVLLQKKLKNNVHITLVDRNNYHYEATDLHEAAAGTQSASRITYPISDVINPQITTFIQDEVVK
IDPDKKTVKLAGHEELLHYDYCVLGLGFVSETFGIPGAEENALPMTNVKEALAIYDHIIAKMKDYRTTHNPDDLQIVICG
GGFTGIELAGALVDARASYAKIAGVSPDEIKITLIEASTRLLPMFSEKLAEYGVNLVKSLNVQLLDGSRISKIEPGKVIY
KHGDDDEESLNAGIIIWTTGVSGNPLMEECGFDAKRGRVIVTDHLTDPKHDDIYIIGDVAAVMPPDGKRPYPTTAQIALA
MADYTAEDIVSRIKTGKHEAKPFTYKSLGTVASVGNTRAFGEAMGHELRGYPASAMKKIIADRSLLETGGLKELFAKGRF
DLYH
>SEQF1778_EEI65854.1 thiol reductant ABC exporter, CydC subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKIPLLKAMKHDRWVKPFLKRYKWTLVLAITLGIVTFICASGLMFTAGYLISKSATMPFNILLVYVPIVLTRAFGIFRP
VTNYFERLVSHNWVFKMTSAFRKKLYDSLEQDAVFFNSKYRIGDILGLLSEDVAHIQNLYLRTIFPMLVAFGLYAIIVIG
MGIISPLMGLLMLILFGLIIIAVPVWSVLVNGARQQLEKQYTNTLYADLTDNIMGITDWVFAGRSADYLQHYNKSEKNVL
ASQKAMKRFEHWRDFILQVMILLVVVSLIVWGAAHFGGHWGGSANWIAAFVLCVFPLDEVLSSLPAAAQETNVYTDSLKR
LNELPQPPAPSKVNIEIAAPYHLKITDVYYRYPKTEKMILRGINLDVNPGEKLAILGRSGAGKSTLASLIRGDRKPTSGT
VTLNNVPTGEFGDEISNYIGIVHQSPYLFHTTILNNIRLGNEDATEDQVWDVLERVGLAAMIRRLPKGLHTMVDEAGLRF
SGGERHRLSLARILLKDAPIILLDEPTVGLDPVTEEKVIETFMEQLQGKTLIWITHHLQGIEMMDQVVFIEDGKISMQGS
PAELQKTNEHYRALKMADEGI
>SEQF1778_EEI65855.1 thiol reductant ABC exporter, CydD subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDRLLFKIEGSRHIMIKLVGLYVLQAFLILGQGLSLAALLTGLWQGHSLLSQIYGLGGFIVCYLLRHGLTEIGNDWLDK
YSANAAQNFRQQLLKKVFALGPVIVQREGTGNMVTLALDGIKEVENYIRLIYSKVISMMIIPVIILVVCFWLDWISGIVM
LLVYPLIVLFMIILGYAAKAKADRQFAAFQILSNHFIDSLRGIDTLKYFGLSKKYSQSIYRSSERFRKSTMSVIKVAMLS
TFALDFFTTLAIAILAVFLGLRLINGHLLLFPTLAILILAPEYFLPIRNFASDYHATLNGKNSFHAVRRILEMPLPKKPT
VELHQWTGVDGLSFENVEFMYPQNGSELTNLDLTVKGNQKIGIIGMSGAGKTTLINLLSGFLAPTSGQITIQGKKVTTLD
IHDWQKQILYIPQTPYIFADTLKNNIAFYTPNVSEDKIKEAIHVVGLDDLVAELPQGLGTMIGSGHRALSGGQAQRIALA
RAFLDPERRVMIFDEPTAHLDIETELELKKRMLPLMENRLVFFATHRLHWMKQMDYILVLKNGKLIEQGTYQQLLDEHGY
FTELMDQTRGKEITHE
>SEQF1778_EEI65856.1 cytochrome d ubiquinol oxidase, subunit II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSFLQLLWFVLIGVLFAGFFFLDGFDYGVGMAVETLAHNESERDQLVRTIGPVWDANEVWLITAGGAMFASFPYWYASLF
SGYYLILMIILAGLIIRGVSFEFRKNSPMSQKRIWDWALAIGSAIVPFFLGIMFVSMIHGMPIDANGNFHAGFFDYFNWL
SVVGGIALLLLTYLHGINYIALKTTGPVQERARNYAEFLYWILYAGEVVFALLLIFMTDFMAVHPVGTIIMLILIVGFSV
LAQVETFAGHELIAFISSGLTLVSLVVLIFIGLFPRVLISSISPKYSILIQNASSTEYTLTVMTIATCCLLPFVLAYTIW
AYWIFRKRIAMPAIPEVK
>SEQF1778_EEI65857.1 bacterial cytochrome ubiquinol oxidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKQETVSTILFIDILRREVFIMTILSLARFQFAMTTVYHFFFVPFSIGTAFIVAIMESMYVSTKDETYKKMAKFWGNIF
LLSFAVGVVTGLIQEFQFGMNWSDYSRFMGDIFGAPLALEALLSFFIESTFIGLWVFTWKKVKPGLHLFFIWMTSFGSLT
SALWILTANSFMQHPVGYEIKGGRAVMVNFGALLKNPQLWYEFGHVILNAIMMGGIIIAGLTAFQLLKNQKLSEANKKFY
KKSMRLGLLVSLIFSIGGIALGDAQMQYLIKEQPMKFAATEDVFTTTGKHAPWTIVGIADMKDHEVKGNIDIPYALSILS
YHKTTGAVTGMNELNAQYKKKYGKNLDYYPPVNTLFYSFRIMCAVGAWIFLVSLVGLIMTREKSKKPLAQRRWALWCIAI
TTFLPFIGNTAGWFVTEFGRIPWTVYGLFTIAESVSPNVSVGSLLTSNIVYFVLFTTLAITLIWLIVLELRKDPSEAIEP
KFKKVLDPFDKEAF
>SEQF1778_EEI65858.1 valine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIGRFLVNAQNKNEDCVLKGVSAMTEKNMSTKYDPAAVEEGRYQWWIDQGFFKPSGDKKAHPYSIVIPPPNVTGKLHLGH
AWDTTLQDMIIRQKRMQGYDVLWVPGMDHAGIATQAKVEARLRKQGISRYDLGRDKFVQQVWDWKDEYADIIHQQWAKMG
ISVDYDHERFTLDEGLNKAVRKVFVDLYNKGLIYRGTYIINWDPQARTALSDIEVIHKDDKGAFYHVKYPFTDGTTFNGK
DYIEIATTRPETMFGDEAVAVNPNDERYKDLVGKKVMVPLVNREIEIIADDYVTPEFGTGMVKITPAHDPNDFKVGKRHN
LPELNTMNEDASMNENAGKYEGMDRFEAREAIVKDLQDQGYMLKVDPIVHSVGHSERTGVQVEARLSTQWFVKMKPLAEA
ALKNQDTDDRVNFVPERFEHTFTQWMENIHDWVISRQLWWGHRIPAWYNKQTGEVYVGMEAPKDAENWEQDKDVLDTWFS
SALWPFSTMGWPNTDSADFKRYFPTNTLVTGYDIIFFWVSRMIFQSLEFTGQAPFKNVLLHGLIRDEQGRKMSKSLGNGI
DPMDVIKKYGVDALRWFLITGSTPGQDIRFSYTKMDAAWNFINKIWNASRYVIMNLGEMPAPVLPDKSKWDLADRWILSR
LNATVKQVNEQFDKFEFGEAGRALYNFIWNDFCDWYIEMTKEKLNNGTDEEKNDTKNILGYVLDQTLKMLHPIMPFVTEK
LWQSMPHDGESIMVADYPVANAELDDPAATEQMNSLIELIKAVRNIRNEANAPMSKPVDILVKVDSDHLAQMLNDNRDYI
ERFCHPENLTIGKDVEAPKLAMSGILTGAEVYIPMAELVDLDEERDRMEKEIAKLEKEVERSQKKLGNEKFVNNAPEKVV
EAERQKATEWQQKLAAAKERLQSLQQA
>SEQF1778_EEI65859.1 thiamine biosynthesis/tRNA modification protein ThiI [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQYTEIMVRYGELSTKGHNKKSFIDRLGVNVRKALHSFDQVKVHAQRDRLHVELNGVDYDQVMNRLKLVFGIQNFSPSIK
VDKTFEATAEAAAQMIAEQVDKPITFKVETRRSDHQFAIDTFEMNNKLGGYLLDKFPDKLKVDVHHPDLTLRVEIRLNGI
FLSSETIKGAGGLPVGTAGKGMMMMSGGIDSPVAAYLGMKRGVSMEMVHFFSPPYTSPQALAKAKQLTERLAKYSGSIKF
IQVPFAEIQETVKEKVPEGYLMTIQRRMMLRLAAALMIKRHGLAIFNGESLGQVASQTMESMLAINDVTSYPVLRPVLSF
DKTEIIKIAQDIDTYDLSILPYEDCCTVFTPPSPKTRPNVERAREYEKRLDIEGLMQRALDGIEITEIHPGEDYLNQNED
VFAELL
>SEQF1778_EEI65860.1 aminotransferase, class V [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYFDNSATTKILPDVLSTYETVSQKIWGNPSSLHNFGENAWNLQEQARQQIAKLFGVKPSEIIFTSGGSEGDNWVIKGT
AMAKHRFGKHIITTSVEHAAVKNALEQLKDFGFEVTYLPVDKEGRINPADVKAAIRPDTILVSIMAVNNEIGTIQPIKEV
GEILKDYPNIHFMVDAVQAIGKGLDDQVFSDRVDFATFSGHKFHAPRGTGFVYVKSGRKLEPLIAGGGQERTLRNGTENT
PGNVAMAKAIRLVKENEAESVKREQAIKERIYDHLSKFDHVKLISGRDQGFASHVLCFAIVGVRGETIVHAFEDKDIYIS
TTSACSSKKHSEAGTLAAMKVPEDIATSAVRISLGDQNTLEEADQFNKTFDELYAGFKKIIE
>SEQF1778_EEI65861.1 septation ring formation regulator EzrA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKVVFQVLIGILIIVVAILACVYFYQRRAVKQINDLMESEKKLADQKVDQQIKNVEELQLIGDAKKQFETIKNKYEKQV
RPAITAFNKRAPQLLADSRTSKLLTINTQIRDLQADLAKLTTTLQQIQKDLQHLRQQQHTHKQAVEQIKNKYRQFHRQLN
EKSFEYGDSEKQLNSRLNELEDQFAQFTDLTNKGDIEAAQEILTNLQSENDKFEQDLKKIPQLYKPIATEFPEQLSELKS
GYKTLVKQNFHFTEKNIDKQIEQLQSKLDQTIDQLNNLQLDVVEQSNKDLSDQIDYLYGVMQKEIDAKNEAVHLIEVMKG
FTKHAQRQNDELGVELDRLSLNYTLTNHEQETVRELGEQIKAIIKQYRDDAEAIANKTAVYSQVLDRQKSNQKNLTEIEK
SQEKLNDEVAKLQTDEQRARQMLQKYSTQIRTIHRQVEQLNLPGLPKDYLDYFFGVSDEIKKLADELNEYKINMDEITKQ
LIIVESDLDTLNDKTDILRDSAELTERFQQYANRFSDNEKIAAAAKKSQELFKQFNYTASLEAIATVLEEIEPGSYKRIE
DTYYREIGKN
>SEQF1778_EEI65862.1 ribosomal protein S4 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSRYTGPSWRVSRRLGVSLSGTGKELARRAYAPGDHGRDRRGKLSEYGTQLREKQKLRFMYGMTERQFSNLFVRAGKIKE
GTHGANFMALLERRLDNMVYRLGLATTRRQARQLVNHGHITVDGKRVDIPSYEVKVGQIIAVRDKSKNLDIIKNAVEAVV
SRPSYVDFDADKLEGKLNRIPAREDMNADIDEALIVEFYNK
>SEQF1778_EEI65863.1 ABC transporter, substrate-binding protein, family 3, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGDILMKKAKAIWLLILLVVPVLLLSGCESVTKRADTQDTWNRIERRKRVIVGLDDSFVPMDFRQKNGKLVGYDVDLAR
AVFKQYGIKVDFQPIDWSMKETELKNGTIDLLWNGYSVNPSRAKKVAFSRYYLENRQILVTKKKSNIKNLNGMTGKTLGV
QNGSTGVTVLDEKPKLLKDKIKHHTPVLYDTFPNAFIDLNANRIQGILMDEVYANYYIKHQPNSNSYRTYISKELPMEHF
AVGMRKGDKTLKKKIN
>SEQF1778_EEI65864.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLEVRDLKKSFGDRQILDGVNLTVKDGEILCIVGPSGAGKTTLLRCITGLETPDSGEFFINGRRFDPQGTDAADRVIGVV
FQDFKLFPNLSVMENITLAPMMVLKKDKQEAIAEAQKLLEELGLNTKGKLYPYQLSGGQKQRVAIARALAMKPKILCYDE
PTSALDPNLRKDVANIILGLKKDGMTQLIVTHDLEFAEDIADDILRVQPLGQRQNK
>SEQF1778_EEI65865.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSMQYISEILPSLFQGAALTLQIFFWTLVGSLPLGILVSLGLTSKIKPLKWVLEIYVWLMRGTPLLLQLIFVFYGLPIIG
IVFERYDAALVAFILNYAAYFAEIFRGGFQSVDQGQFEAARVLRLSYWQTLRKIIIPQVIKIVIPSIGNEVINLVKDSSL
VYVIGLGDLLRAGNVATSRDVTLVPLMLVGLIYLILVGICTLILRQVEKCYAYFK
>SEQF1778_EEI65866.1 rod shape-determining protein MreD [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYRLSRLKYIFPIGLFVCLFLDGALSHVWAPLFFSYPYSMVSELVLLWLVLSYFFQDDIEIPLIPFAIAAGAVYDLYFSG
ILGLYIFLYPLVVEITKILSRYFSSSFLSMIMIFFVDIVIFETFNYWAYYLVNITNVGFGDYLIYTLAPTLALNLIYFVV
LFWPIRAIYRWALDDDQI
>SEQF1778_EEI65867.1 rod shape-determining protein MreC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHWRVIMQKFFSNRRLVIAVIILVVCFGLMAGSVSLRNRRNTPPIIQQFGNDIVGFVDSAVALPVNWAQTSISSINGLMN
TYSENRELKQQVTELAQTKVRDQTLAHENKQLKQQLKLNNSMTDYNTVTAAVLMRTPSSWQRQLVINKGQSSGIKKNMPV
MSGSGLIGRITEVNKTNSKVELLSDTSESSNRFAITLNGQNGKVINGIITGYNARNNELEMGQVTSKAKIKKGTRVVTSG
MGGVTPKGLYVGRVSHVGKDDYGLAQKIYITPATDFNDINIVTVAEAASQE
>SEQF1778_EEI65868.1 cell shape determining protein, MreB/Mrl family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLGIGTKNLGIDLGTANTIVYLEGKGIVLREPSVVARNSKTNEVIAVGSDARDMIGRTPESIVAIRPMKDGVIADYDTTV
AMMKYYIDKALGNNGKPYVMVCVPSGITEVEKRAVIDATRVAGARDAYVIEEPFAAAIGAGLPVMDPTGSMVVDIGGGTT
DVATISLGGIVSSRSIRMAGDKMNDAIVQYVRQHMNLLIGERTAEKLKWDIGSASVEAAEEMGTTQVRGRDLVTGLPKTM
QVSAKDVSTALQDVVDSIITAIKGTLEETSPEIAADVIDHGIVLTGGGALLKHLPDVIADATKVPVFIANDPLDCVAIGT
GESLKSIDVMKKK
>SEQF1778_EEI65869.1 DNA repair protein RadC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENEVINEYTKLVWTAIPDKPGTKKQELCQRFLRKCPTPLAIKRLSRIEKNEINEWAPEMLNFFAAIELGKIVTKSHEEI
IGHAYSSIELGRKMVDHFQSEEQESVCIACTDIHNEIIDWKILFVGGGCECILYPDKIFQYALRCSAQGIIMIHNHPTGD
IHPSKQDESFTRRLERGCEIIGLHLVDFMIVGRDTYHSWREASLVNELKK
>SEQF1778_EEI65870.1 bifunctional protein FolC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKTYDEALSFIHGRTQFKKIPTLTRMKRFLAELGNPQEGLKYIHVTGTNGKGSTVAMMRSALLESGLTVGSFTSPFITR
FNERIEYNGIPISDDDLLRLVQKIAPVVKKLDDTLETGGPTEFEIDTALMFCYMAEKKPDVILLEVGIGGLYDSTNVITP
VVSVITTVGWDHMKYLGDTLAKIAAQKAGIIKKGVPVVLGALPTEARETILADAKEKKSPVFELGKDFTVHKLNGHQFHA
KIRYQGKNLKKIEIILGLPGDYQIENAAVALMALELFMEKRGLAIDRRALIAGLENAAWPGRLEEINTTPLVLLDGAHNL
PGVQALVHTIKNDFADREVYLLVAILADKQYELMLGELASLGNIHLTVTHFAGPGPKRPSADLAKAVADIPTKYPIQIIN
DWRLGIGQVASQMSADDVMIITGSLYFVSDVRRFFLN
>SEQF1778_EEI65871.1 preprotein translocase, YajC subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSLSSFVLGAASSNNASGYSGIILIILMVALMYFFMIRPQQKQRKEHQEMMNELHPGDEVVTIGRMHGKIDSINKADRT
VTLDCEGIYLTFDMVAIARVIKRADAPASEVPQDNKAVASSAADSSADASADSAASEPTSAASASDEQKGSEEK
>SEQF1778_EEI65872.1 tRNA-guanine transglycosylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKLEFTINQSDGQARTGILQINGRQIETPALVASGDELAKLSPNQLNQAGVSAVKTSGLKRWLKYDSMTEKLGDLHQLF
QWDGLLFVDLETEEAYHLAKPRGKKHDGVRFHDPITGQLKFWQPETALQVQEALGADIFQSFDQATDYYAPVDDLKVGVK
QTNNWLSVVKPQKGQALGSIVGGGLKDLRTASIKAVDEAGLSGYRLSGIPSSLDDQEFSRIINEITPKLGEEKLRYLPAA
LSFDQLIEAILAGVDLIDSNLAAKKAANGIALVNQGVTVLHLDRQHFSFDSQVLDRQCACATCRAGYSKALLHSLITNQS
FYGEQLLLQHNLFTLNKLMSSLRQAIKNHQTKKFVQELLQNQ
>SEQF1778_EEI65873.1 Holliday junction DNA helicase RuvB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENDHGILSDHPSGEEENQVEITLRPQKLREYIGQPKIKHELEVYIKAAQSREEALDHVLLYGPPGLGKTTLAMVIANEM
GVNIKTTSGPAIEKPGDLVALLNELKPGDVLFVDEIHRLPKVVEEMLYSAMEDYYIDIVIGEGPTAHPVHFPLPPFTLIG
ATTRAGMLSAPLRDRFGIVEHMNYYTQDELTKIIFRSAKIFHTSIQNEGAHELSLRSRGTPRIANRLLKRVRDFAQVAGK
QSIDSAIVKQALSLLQVDDRGLDEIDRKMLLTMINFYHGGPVGLKTIAANIGEETNTIEEMYEPYLLQIGFISRTPRGRL
VTPTAYEHLGIEYPTDRN
>SEQF1778_EEI65874.1 Holliday junction DNA helicase RuvA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYEYLTGLVTVVAPQYIVVDVNGVGYKLLVANPYRYQEDRTKKVQVYVYQAVREDNISLFGFTDQNEKKLFMQLINVSGI
GPKSALAILANPDHQGLVDAITNNNVNYLTKFPGIGKKTASQIVLDLRDKLTNESSSSLFATTQLTVDATVNRELKDALE
ALAALGYKERDIKKVQKTLMKEEQMATDEYLRQALRLLN
>SEQF1778_EEI65875.1 DNA mismatch repair domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKIHELDNILANQIAAGEVIERPASIVKELVENSLDAHSHRVDIIVENSGLDSVRVIDDGDGIAAEDIRLAFHRHATSK
INSRHDLFKVQTMGFRGEALPSIASVADVTLTTAQAGQEEGTMIHLRGGKELVVKPAGARQGTDIKVTDLFFNTPARLKY
LKSPQTELTRITDIINRLALANPAVAFSFTHNGRELFRSAGNNNLQQVVAAIYGVQAGRKMLEISGADDDFKVSGFVSLP
ELTRASRQYITITINHRYIRNFELTKAITQGYESKLMVGRYPIAVINIDLDPVLVDVNVHPAKREVRLSKEQQLIKLIAE
TIRQRIAVENLIPDVDADQFIPNDDEVADLDRRLKEASPVYHAAPISAVPATEKAATEISTPAADNPAHADALDSEIPAP
IVIHHLEDLNTLAMQKFDERYQNEGEVTPFSAPVPTMTKKPVKPANIELDVHDKQDQQQNRFPDLQYIGQLQGTFLLAQA
GDGLYIVDQHAAQERINYEYYRQKIGEVSADQQNFLVPLVLNYSTVDAMTINQHLDTLAAVGLELESFGQNSFILRSHPT
WFKEGQEEDTAKEMIDWLIKNGKLTVKEFRMKTAIMMSCKRAIKANHHLDEREAKALLKRLPQCENPFNCPHGRPVTVHF
NDQDLEKMFKRIQDSHTPYADDFDDHEF
>SEQF1778_EEI65876.1 DNA mismatch repair protein MutS [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKTTPMMEQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKGAQLLELTLTTRNHSAKNPIPMCGVPHRAVNNYIDILID
KGYKVAICEQMEDPKKAKGMVKRAVTRLITPGTQMDLNGEQARDNNYLAAISGQNGVFSIAYTDLSTGELKTTSLNNAND
AVNELVNLQSKEVVVDGELPAEITTQFKQRNILQSHQPTVLKNAEISYLTQDLDDQAQQHVVALLVSYLLTTQKRSLAHL
QKAIAYQPSSFMKIDHYSKTNLELMRNMRSGKRQGTLAWLLDETKTAMGSRLLKRWIDRPLINQNAISERQDKVQELLDH
YFERSNLQQELIKVYDLERLAGRIAYGSVNGRDLIQLKTSLKQVPKIKYVLETLDSPVFEELQKQLDPLDDVADLIDQSI
VEEPPIAVTEGGVIKDGYNDQLDQYRDAMNNGKQWIADLQEHERKLTGINNLKIGYNHVFGYYIEVTKVNLNKLPKDRYE
RKQTLVNAERFSTPELKEKEALIMGAQEKSTALEYDIFVKIREQVKGQITRLQKLAQQLAELDVLQSFAVVSEDYHFVRP
KMNTGHVLKIKDGRHPVVEKFMGHQEYVPNNVLMGEDTDILLITGPNMSGKSTYMRQLALIAVMAQIGCFVPAKSAELPI
FDQVFTRIGAADDLISGESTFMVEMMEANNALTHATDRSLILFDEIGRGTATYDGMALAQAIIEYVHQHVRAKTLFSTHY
HELTALENSLTRLKNVHVGATEKDGELVFLHKVSAGPADKSYGIHVAKLAGMPSLLLKRADTILQKLEQKDVKLPNAPKP
ATDNYHTEPISAKINEAAPVKKESAPVVEDNGQLELFATQPEKKESSVDRRILHQLKELNLMGMTPMDVMNQIYKWQQKL
K
>SEQF1778_EEI65877.1 YmdA/YtgF family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKILMFAALAMVVGIIVGYVIRKVSYEKQVAEAHNDAKGIISKAKQEAVTAKKEAILEAKEESHQYRERVEDELKQRRSE
VQRQEDRLLQREASLDHKDSALEKRENAVGVRERKLDQEKEQLHQSKEQAEALIEQRKQEVEKVAQMSQEDAKQLLLSEV
KEQLKTERAVMIRDSEQEAELSAERNAKKLIVEAIQRSAADVVSETTVSVVNLPNDDMKGRIIGREGRNIRTLETLTGID
LIIDDTPEAVVLSGFDPVRREIAKIALEKLIQDGRIHPARIEEAVDKARKQMDTQLRETGEQALFDLGIHSMHPDLIKTV
GRMKYRTSYGQNVLDHSIEVAKLAGIMAAELGEDVTLAKRAGLLHDIGKAIDHEVDGSHVELGVELTRKYKENKVVINTI
ASHHGDVPANSVIAVLVQAADAISGARPGARSESLEQYIQRLKKLESIANSYDGVDHSYAIQAGRELRVIVKPKKISDLQ
ATTLSHDIKNKIEKQLEYPGHIKVTVIREVRAVDYAK
>SEQF1778_EEI65878.1 RecA protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADQRKAALDVAIRKIEKNFGKGSIMRMGDATDMKVASVSSGSLAIDKALGIGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQRQGGTAAYIDAENALDPQYAEALGVNIDDLLLSQPDSGEEGLEIADALISSGAVDLVIVDSVAALVPRAEIDGDMGD
THVGLQARLMSQALRKLSGEINKTKTIAIFINQIREKVGVMFGNPETTTGGRALKFYSTIRMEIRRAEQIKNGTDVIGNK
AKVKIVKNKVAPPFKRCEVDIMYGEGISKTGELLDMAVENDLVDKSGAWYSYGNERIGQGRENAKKWLKEHPDSMNELMD
KVRVANGMEPLNEKSTKETADDKASGKTSENKQETIEEASKE
>SEQF1778_EEI65879.1 competence/damage-inducible domain protein CinA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDAEIISVGTEIVLGQIVNTNAAYLANRLTQLDLPATYQTTVDDQSQRLERVINYALTRAQLVFVCGGLGPTADDVTMPT
VAKVLGKELWTDEEHWKWIQKTFEQRQIKMEPENIRQAQYPRGGEPLANPVGLALGCWYETKGKVVVVLPGPPAEFKAMV
EKSLIPKLQQYFQTGKQITSRTLNFLGRPESQLMDEIEEATNDIPGISITSYVQPTAIQVRLTVRDLPVVEAEEKIDQAQ
RAILAVEEPFFFGAGDDLTLAKVVVEQLKNRGWKLTAAESLTGGMFQSTICSVPGASTVFNGGFVTYAASAKEKLLGIPH
DTIDQYGVVSSETAAAMAEGCRRKLNVEVGIGFTGVAGPDMLEGQPAGTVWIGLAMKGCPTKTVQLHLASYVGRQAIRTL
SVQYGLQLIYRELKK
>SEQF1778_EEI65880.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLPNKLTVIRLIIIPFFLLLMVLPLQSWGAVSFWGATIPMAQLIAAILFIAATITDNLDGQIARRHHLVTNFGKFTDPL
ADKLLVMTAFIVLTGNGVVPSWVTSIIIWRELSVTGLRLLLVEQDGVVLAAKMPGKIKTTTQFIAIIFLLLNNVIFAIWN
IPFGQIMLYICLFFTIYSGVDYFIQGRDVFSDGFK
>SEQF1778_EEI65881.1 hypothetical protein HMPREF0534_0803 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSENENDQKRLEIGKILRKAREEKGYTLDDLQQMTKIQKRYLIAIEDENFDELPGDFYVRAFIKQYANTVGLDGNELLQK
YDDQLPQTKTEEYSDHLAQAVETRANQRKTVSGSVDKVRNYMPTIIIACVIVLVLAAIWITAIARNHRDSSTRIDNSSVS
VSGESRKKASTSAKKASTKQSKSTAIKLQEAPNRNDTSVTYTASQLTKDTTLQIEPSDRSWMQVRANNNDLLNRTLNNNE
KTSVKISRDTTSLIITVGNARATKLKLGNQEIDFTNNGRYQNTRNVTINFGRTQTSSSSASQPSNSSSQASSSSARPNNA
TQPSAANNNSRPQTNASQQSNQPTR
>SEQF1778_EEI65882.1 peptidase M16 inactive domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDREVYQKFNQSIYREQLSNGLKVQLLPMEGYHKTYAILTADFGSIDNHFIPYNQKEAITVPDGVAHFLEHKMFEKKDHD
AFDLFGKLGADSNAFTSFTQTSYLFSTTSNLHENLDVLLDFVQDPYFTAETVKKEQGIIGQEIQMYEDDPSWRLYLGILG
NLYPKDPMRIDIAGTVESISHITPEILMDSYRTFYQPTNMNLFLVGRLDPEETMGWIKQNQEQKIFAPAETPQRLFSLND
PTAHDVIPFRSLTMDIVRPKVMVGLRGTKQFDDGKERLHYKLAIDLLLDVLFDDTSDNYLRLYNNETLDDTFSYNFEMQR
GFHFAYFSSDTDQMERFADEIIDILESADQQIEAARTRFEGIKKAELGRLIGLLDSPEAIANRYAGNLFAGASLMDEIAT
LETITIDDLYQVAKEFITPQGISVYQVVPQHQ
>SEQF1778_EEI65883.1 peptidase M16 inactive domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDFNLARGVDLHIIPTKQFKMNHVLIDFATPQTPTNATARNLLANLLETSTHRYPTQTALARQLASLYGAYVNLYVNRLG
TLHTVRLRASFVNDRFVDEDLFEKISSLINEIIFYPLIDDGEFDGPTFRIQSNNLKSAIKSLYDDKQFLANQRLMDLYYQ
NDSVMKVPSFGQIADLENLNAKSLVSTYHSMINEDKIDIFVLGDIDPMRAQQVIAKLPFKDRDIANNSPLYHQALYDQVQ
RKTEYQQVNQAKLNLAYSLPVYYHDADYYAGLVFNGLFGGTPYSKLFTNVREKASLAYYASSRLLPFNGIISVQTGIQAS
DQEKVQNMIQEQLTALQNGDFTTETLSEVQDSLINQYRAGHDLASNVLEQQLVTKLVNESDKNFITEIKKVTIADVMRVA
KQMKLQAVYLLSGEK
>SEQF1778_EEI65884.1 hypothetical protein HMPREF0534_0806, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
QGLGNLQKNGELRKLNEKWFGQDNNYLGPDNTK
>SEQF1778_EEI65885.1 hypothetical protein HMPREF0534_0764, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLLSFIHQNKKEGSILFVSIAVLLIISSILLFQYRYYQNYQEMGRDLCSIYI
>SEQF1778_EEI65886.1 hypothetical protein HMPREF0534_0765 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKGAFTLIEATYALIISSLVIINISLVTTSMRQVGKMNLESTITWHLFLRELESVNHRFELMEVRDNWLLLYSQTTDQK
YELRENHALYLTCQNKGGYMPLLDSIKNHEYSFTQLDSQRVLIKVTRKDGEKASAIVKFYPPK
>SEQF1778_EEI65887.1 hypothetical protein HMPREF0534_0766 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRNAKAKAFMMADSLISLFIVAMGINLFFICEKQLWLQNRNLQLKMAATRLGKEASDLYAVKKQSVILSRGDLTAKATVQ
RVVVYNNDRCLCRVER
>SEQF1778_EEI65888.1 prepilin-type cleavage/methylation N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFREEGFTFLEAIIVLGITALLLLITIPNFTKTRQKLAEEQFWQSLHQDWQWAQLKCESKHQFVVIRHDKNNEMITFRI
NDQTRETKEILIPSTLNVEWFGELYLTPNGYTRPCTQRFKSLIDGHYYYMKIQLGWGGYRIEKR
>SEQF1778_EEI65889.1 prepilin-type cleavage/methylation N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKILKKKQSGFTLLEMSIVLFIISLLVLIMLPNLSQQRKHANSIHGKAMTSVIQTQIDAYENENGTDNVSLEELNKANYL
TDAQVQQAHHEKIVIVDGKAIQR
>SEQF1778_EEI65890.1 bacterial type II secretion system domain protein F [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKLRRILHVNTNKVKFNHQQQANFFLLLADLLSVGFSVKEALGFIKAVNPKLAPWIASIDKRMQKGASFAQSLQQEVKD
DLFYQLLLAEKHGNLTKTLSEVGKILTARERQRKKLFSLLQYPLILLGMLGVVICGLILFVFPELKVWQGERQTLPLIHM
ITLGAIYLFTVIFISAVFQGLRWHQMNKEQRLIKICTIPIIGKCYCYYFQYYLTSILGSMLQQGLSLAEICEITQSFDRK
SILYIFGNKIMTTIQRDGDISEMVATYSFLPNELIVFMNKGATRENMGRDLIVFANLKFKALTTAIEHLLIFVQPVIFSI
IAIIIVCLYLSILLPIYHSFQGVY
>SEQF1778_EEI65891.1 type II/IV secretion system protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPSFEEELIRMIRKQPSDLYILPHDRYYQLSLSIKGTLFPFKQVTRDYGQRFISYLKYCANMAVSEHRRPQLGAFKFTYA
HQKINLRLSSVGDYQGRESLVIRFIYPLNDIRFNFLVPHQWEILQKYRQQRGLILFAGPMGAGKTTTMYQLARQLLPKQI
VLTIEDPVEIDHPGFIQLQVNELAGMDYESLLKLGLRHRPDVFIIGEIRDSQTAAMSVQAALSGHLVLGTIHARNAYGVV
SRLQQLGIDSYYLQQVLTAVSYQRLIPLVNGEQAILCDLLNRHQFSDLLSGTKKGGMSNEWSKALQQAVENGEITENTAR
QYQQG
>SEQF1778_EEI65892.1 DNA-binding regulatory protein, YebC/PmpR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSGHSKWHNIQGRKNAQDAKRGKIFQKISRDLYQAAKAGDPDPANNAQLRLVIDKAHAANMPKKNIDRAIAKASGIGGAK
FEEVTYEGYGPGGVAVMVSALTDNKNRTASAVRSAFSHSGGSLGASGSVSYMFDRKGLIEILRDGLDKSEDDMLMDALDA
GAEDMKATEEKFQIFTDPSNMTDVRDALQEQGYELDTAEVTMIPQNRTEVPADKAKQYRHLIDELTENDDVADIYETGIL
PDEDDDEE
>SEQF1778_EEI65893.1 hypothetical protein HMPREF0534_0772 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTRSELRAQRQEKVEKPIEETPKKHHFLYCLWGVICVTLLGLTLLINSTLLNVNFVKEEVTNSSLESVMLNQVNSSLIQ
YGISTSVLKKSDTDKLINQAIDQVYAGEKINLDLSPIVNNVGASVNSQLAQYGLSTSMLPAGSSSAIAGNINSMVNSQLN
TPEVAQLINGIKIAKTVVNIILVISIISLVILILKGLWQHHLIGSFRWICLWGTILYTGIVMTIHAIALQMGAGQPDISP
FISQVTNDFQQTGFHGSMMMIVISIVLFILHFVKRKWQPRQ
>SEQF1778_EEI65894.1 catabolite control protein A [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKQSVTIYTVAREARVSMATVSRVVNGNPNVKPETRQKVLDVIKQLNYRPNAVARGLASKKTTTVGVVIPNITDPYFAE
LALGIDDVASMYKYNIILTNSDSDDEKILKVVRSLLAKQVDGLIFMGHDVSDDLRNEFESTNTPVVVAGSVVNDDALPSV
RINYQAAAKEATEFLLKHGDQQVAYITGPLRYSINGEDRLNGYKEALANNNVPFNESLVIETDGSYQAGYAKAQEVIEKG
LKATYVTDDSLAAGLLNGLTDAGISVPDDFELISSNDTNYTKVVRPTITSITQPLYDLGAISMRLLTKLMDGDDSNDDEK
NVILDHGFVERQSTRK
>SEQF1778_EEI65895.1 Creatinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNAVTKLNQLQSALTEKGLDAAYISDPMTINYLTGFYSDPVERVLALALFTDSEPFLFAPALEVEAIKDTGWKYPVYGYL
DHEKPFELIAEHIKNHAGSPINWGIEGESLTVDRLRALEEVLPNAHFNTDLSPLIAKMRMIKSDDEIAKLNEAGKWADFA
FKVGFEAIQIGKTEQEVAADLEYALKQHGINKMSFDTLVQAGPHAAEPHGATSSNKIQNNQLVLFDLGTIVDGYISDASR
TVAVGKLNDKQKDIYKVCLEAQLAAQNAAKPGMTAEELDKIARDIITVAGYGEYFIHRLGHGMGSSEHEFPSIMEGNQLV
LEPGMCFSIEPGIYIPDFAGVRIEDCVHITEDGCEPFTHTTKELLTFPH
>SEQF1778_EEI65896.1 hypothetical protein HMPREF0534_0775 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKKLLAGILLGGVATYAAWKKMAPAKKEALKESVDEKINKVADYVTDYTLDALDIVDDLMSDSNLNDKVSGAADAVNNV
KGKIKDSANKVVNHMTNDDFDKQTADIREELAKNKETDEDNNDIIIDATSDQKPASTEDDETDQDDANAADK
>SEQF1778_EEI65897.1 hypothetical protein HMPREF0534_0776 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTFGQLAGLIAAIAFLILVIFACILLNQLSKTMKETNKSITTLTRDVHYLSQEMEDVLSNTNTLLDDINHKSEQLDPAVK
AVADVSQSVSEVNASLQEMVEKARLHREKRQFDRSIFKFAGKTLVFDAFNKFRQHRKQKKGMTNNE
>SEQF1778_EEI65898.1 transporter, small conductance mechanosensitive ion channel MscS family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITGATSLTSKQTEQLKKAFTDLSWHEISQQLLSKFLLIIVTFVLFLILLWVGRVIIVHLFQESKKYNVLKNSNRMATVK
ALVLNIYRYTCYFFLLYAILSEIGVPVGTLIAGAGIFSLALGLGAQSLVSDIVTGFFILLEQQLDVGDTVQIGQIKGTVT
ALGIRTTQVTSSDGTLNFIPNRNITIVQNLSRNNMVSNVDIRITSKTPLSKVEEIVTQVNKKLVPQIKALQLKPVIVGPV
VTPDGALVFRVTITAVSGKQSTVASRFLAAYLKELRTNNIPIAWEGVPNEY
>SEQF1778_EEI65899.1 HAD hydrolase, family IIB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIKLIATDMDGTFLRDDHTYNHSLFAKVFRQLERHNIYFVAASGSSFPRLQREFKDYTAKMGFISQNGSVIHLGSKLFK
SFPINQESLARVIHVLDRFYGPQDINQLVISTSEKSYVDQGMSAHDFNIVKLFYENVERIPDIRQIFTQRPTEDFTKISI
NFANHIDLKKVATTLDGYLPPSLIMENSGFNTDLIGNAAATKQNALSLLQSHFNLKANEIVTFGDNENDLGMLAMTSQSY
AMQNAQPIIQMQAAHTTTIDNNHDGVLQTINQLIKNE
>SEQF1778_EEI65900.1 CBS domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDQRLQTLLLKNKQKFMIPASLVATVNQSNSLDHAFLVLTKDRYAKIIVIDNKNRYCGQVSLAMITDRLLETKRINVER
LNELKVRDVMQTDAPVIQDPTDIEENLHLLIDQSFLPVVDDHNYFCGIVTRREVLKAVNYTMHTFGK
>SEQF1778_EEI65901.1 phosphodiesterase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVIKMKILVVSDNHREEKILTEIVQKMGDQVDLMIHCGDSELAPDQEPMSNFKAVKGNNDYGLSYPNELVINAGQEQLYL
THGHLQRVNFSLTPLILTGQEKGASIVCYGHTHQLGAVYDHQMLIINPGSISFPRGEYAKVGGTFAIIDAQPERFIVDYY
NREMEAVPELHCEFRRQK
>SEQF1778_EEI65902.1 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTIVIATKNAGKAREYQDMLAPLGIEVKTLADFAPIAINENGKTFEENATIKATTAANQLQLPVMADDSGLMVDALGGA
PGVHSARYAGDHDDAANNAKLLLALKEVPDEKRTAHFHTTIVGIKPDGTKLVANGRVDGHILHQLTGENGFGYDPLFYVD
ELGKSMAQLTADQKNQISHRGRALRSFMKQFNDWW
>SEQF1778_EEI65903.1 glutamate racemase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKRPIGVMDSGLGGLSVIRVLREQLPQESVIFVGDQGHFPYGTKTKEQIQQLALRIGKFLLEQDVKMMIIACNTATAAA
LRLLQNELPIPVIGVIEPGAMAATQHHYKKIGVIGTESTIKNGAYAKTLAKLNPDLSVISSPAQPLVSIVEHGQTGTSEA
QKAVDTELEVFDNQSIEALILGCTHFPFLQKEIHNKLGSNVQLIDPAFETIRQAKELLTGKNQLSDNLASSINLYSTGDA
KDLVAGAQQWLPNGYSKCAHIELNEEG
>SEQF1778_EEI65904.1 hypothetical protein HMPREF0534_0783 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIVKKERVDMSQKLYNQLIAGHQGLGAGTMRDVILPAILGKETDEMLYWIGKDLARVYPVATAEDLVYLTNQLGFGRLAL
RKKSNTSQVWRLSGVIVKERIQRDEEETSFGLECGFLAQEVEFQLGTVAEAKIFDWHRDYVDILIQNDPQSSADNERSEM
VTFITVDRPDEKEDTLKKETRHSLLKRRKKDKK
>SEQF1778_EEI65905.1 thioredoxin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVNVTTDQTFEQDTATGVDLIDFWATWCGPCRMQSPVVDALSDKMPDIKFFKMDVDQNPETAQKFRIMSIPTLMVKKDG
KVVDQIIGYHSEDQLKQILQQYVD
>SEQF1778_EEI65906.1 MutS2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNKILETLEFDRIKGQLAQYLVSAAGHRELTQLVPQTDYEAVKELLTETTDGADILRLEDGIPIPQLADIKPQLKRLKI
KANLNGTELAQITKVLQTSMSVKNFFDQMREKKIKLRVLTTQVDRLVTIPSITQRLVRSIDPDGRINDEASAKLHGIRQL
ITQTETEIHQQMERYTRGKNAKYLSDPIVTMRNDRYVIPVIARYRNKFGGVVHDQSASGQTLYIEPAAVVETNNRLRQAQ
IEERQEMQRVLIELSQMIAPYRHDIGQNEAILGHLDFINAKARWAHDTKATLPLLNKENHVSLRKARHPLIDPQRVVTND
IKIGEDYQAIIITGPNTGGKTITLKTLGIIQLMGQSGLFIPAEEGSTIGIFDNVFADIGDEQSLEQNLSTFSGHMDGVKA
ILEQITSRSLVLLDELGAGTDPKEGAALAMAILDNIGSKGTMVVITTHYPELKVYGYDRAKTINASMEFDQETLKPTYKL
LLGIPGRSNGLEIAQRLGISPQVIDEARTFVSDNSQDLNNMIGDLVEQRKKAREESEKLAKLVAKNEKVQRDLDKKLTRF
NEQRDKLYEQARSKANHQVSMAKKKADRIIHHLRQLEVQQGGNVKENELIDAQGQLNALHHDNPRLQHNSVLQRAKQKHD
LHKGDAVLVKSYGQYGELLSKRGNHKWEVQIGILKMEIDENNLEKVAKKDLPREKDAKRRPRAAVRTTQTRKTSARLDLR
GHRYEQAMSELSNFIDHALLNNLSTVTIIHGKGTGALRKGTQQYLQSNPRVKSFSYASPNAGGDGATIVNL
>SEQF1778_EEI65907.1 CvpA family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILTTFIILILMGCFINGHRRGLLTMTLMLGTYIVAWIVARQGAQLIGGWLKSLLPSIGTPATFSESLLANVNSNLFFYN
GIAFMIIFTIVSILCHWGIRQLNWIKRIPVVGTVDKIAGGLISFLIGYLIIYVVLLIMQLFPAGWWQMQIANSELARFMI
NQTPGIAHLVIDTLVQGG
>SEQF1778_EEI65908.1 hypothetical protein HMPREF0534_0787 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKQENNEDMITLIDENGNEQLFKELFTFDSDDYGKSYIFIYPAEQENDDSVDIQAYIIADNEDNDGQDLVPIEDDKEWD
MVEEVLNTFLDNDGNFKA
>SEQF1778_EEI65909.1 RNAse H domain protein, YqgF family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRLMGLDVGSKTVGISVSDPLGWTAQAVEIIPIDEENEIFGIDRVAELVKKEQVAGFVIGLPKNMNNTEGPRVEASQHYG
KLLQQRFPDIPIDFQDERLTTVEAHRMLVEEADISRAKQKKVIDEVAATFILQSYLDRHGRLVNKLK
>SEQF1778_EEI65910.1 hypothetical protein HMPREF0534_0789 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATNDKTMFFDFGQERQEDIKQTLKTVYESLEEKGYNPINQIVGYLLSGDPAYIPRLNDARNLIRQHERDEIIEELVRSY
LKNNGETK
>SEQF1778_EEI65911.1 alanine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVVFCFRRGDLMKELKKLNSAQVRRMYLKFFEEHGHQVMPSASLVPVNDPTLLWINSGVATMKKYFDGKVVPDNPRMTSS
QKSIRTNDIENVGKTARHHTMFEMLGNFSVGDYFKNEVIPWAWELLTSDEWFGFDPERLYITYYPKDHDAYNRWREVGVA
EDHLIADEDNFWDIGQGPSGPDTEIFYDRGQEFNNLADDDPENYPGGENERYLEIWNIVFSQFNHTPEDTYEPLPHKNID
TGMGLERVVSIFENAPTNFETDLFMPLIKQAEEFSGTKKYGQNKEDDIQFKIIADHIRTITFAIGDGALPSNVGRGYVIR
RLLRRAVVAGKKLGIDEPFLAKMVPTVGKIMEDYYPDVLKNADYIASVIESEEDRFSATLNGGLNLLNNVIAEAKESKTN
EIDGRTAFKLYDTYGFPIELTKEYAEDEGLTVDEKGFQAAMTEQQNRARNARDMDNGMGVQTDLWTSFKEDSKYVGYTDL
TVDNAKVIGLAHDGQQADEARPGDKNIELIFDVTPFYAEMGGQVADTGDIIDNYGKKVGRVVDVQHAPNQQNLHRVELTA
PIKKGARYKLVVDRIRHLKIEKNHTATHLLDQALRNVLGGHTQQAGSLVEEHYLRFDFNHFGQVTAEDLKKVENMVNEQI
WKEIPVKTVETDIDSAKEMGAIALFSDKYGDKVRVVKIGDFNTEFCGGDHVKNTNELGLFKIVSEGGVGAGVRRIEAVTS
SDAFKFLQDRDDLLTKSAASLKVAQIKEVPHQVETLQNELKEAQKQNESLQAKIAAQQANNVFENVQATKNGSLIAAEVQ
VAGMGQLRQLADAWRSKALSDVLVLATASDGKANLLVAVSDDKTKEGLKAGDLIKAIAPAINGGGGGRPNLAQAGGKNPA
GIKEALSQAKGYLDK
>SEQF1778_EEI65912.1 DEAD/DEAH box helicase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQTKNEREIAMSDKKFADFQLQPYLLTAIQKINFRQPTPVQQQVIPVIMAGRSVVGQSATGSGKTHAFLLPIFSKINPED
QTVQAVITTPSRELAYQIYNAAKQLNKYAPHPLTIHNYVGGTDKQHQVDQLSRKQPQLVIGTPGRVLDLIKSQALDIHTA
KMFVVDEADMTLDMGFLHEVDQIASHFPDDLQMMVFSATIPQKLRPFLKKYMENPVIEEIPTEAVINPDVDNWLMSTKGQ
DRNQLIYRLLTLGEPYLALVFANTKERAVELTQYLENQGLKVAMIHGGLEARRRKRTMRQIRDLEYQYVVATDLAARGID
IDGVSLVINDDLPTDLEYFVHRVGRTGRNGMKGTAITLYEPAEDDLIAKLEERGVKFVPKELKNGQLVTTHDRNRRKHYK
RRQNELDPSMKGYVKKTKKKVKPGYKKRIKKAIKEDEQQKRKLELRHKIRKAKRARQKQHRRERNAR
>SEQF1778_EEI65913.1 DHHA1 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIAFIAILKDSVKFYSGKENSIMADPLTAIFEQIKKYNKIIIHRHQRPDPDAIGSQVGLAEILRASFPYKQIYVVGKHI
PGFDWIGEMDTIDNQTFDDALVIVTDTANAPRIDDRRFDNGDELIKIDHHPNDEPFGDIMWVEPDASSCSEMIYSFYQRF
AKELTLPQKAAHALYAGIIGDTGRFLYPATTPRTMLVAGSLMAAGANAAEISQHENEITLPVARLSAYVYENLQILDNGA
AYVILTNEILEQFGLTEAGTSAIVSLPGRIHDVIAWAIFVEQEDGHYRIRLRSKGPTINELAKQHDGGGHPLASGAKAKD
EAEIKQVIDELDQLTQSYANQK
>SEQF1778_EEI65914.1 hypothetical protein HMPREF0534_0757 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATLIDFILHIDVHLIQIVNQFGDATYLILFAIIFIETGAVIMPFLPGDSLLFAASALAADPRYHLNIWIFIFIFLCACL
GGDSLNFLIGHKIGKSLSNHSLFGKLIDKDSLERAKPSLKSMVRRLLFSPVLFRSLEHLLHLRQQVLVSPTSNLFVIV
>SEQF1778_EEI65915.1 TIGR01906 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNGKFEFIQWGRAILLTLLSLVVAISIALFIVINISPFFITIPKHLLGLSASELIADYGSVIKYIQLPTQRVLELRYLPI
APSAVHHFEDVKHLILLNEAVMVVSLPLLVFRLKKQKRQNQLWRLILPFQMLFILLLFSGFMGITNFDVLFIKFHYLFFS
NMDWLFDPRTTPIILLMPENFFTVLFGLWLGFILIILLLIWGWIKLMLSIFFNKTRT
>SEQF1778_EEI65916.1 HAD hydrolase, TIGR01457 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKDYQGYFIDLDGTTYKGKKQIPAAGRFIKRLQDAKKEVLFVTNNSTRTPDFVAENLRENHNINVTAENIYTTAIATADY
LRSMAPIKSKIYVIGESGLKLALEKRGFILTDDQPEYVVVGLDTKVTYEKLEKAVLLIRNGAKFIGTNADSNLPNERGMV
PGAGSIVKLVEYATQVKPVMIGKPEAIIMKMALERVKLPKERVIMVGDNYHTDIEAAINVGMDSLLVYTGLSRPEEVIKE
KIQPTYKVNNLDEWEI
>SEQF1778_EEI65917.1 hypothetical protein HMPREF0534_0760 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNRAKIQDYIDQREEQRSLIYHIEKKDQTHFTVNGHPYELVKDYRDGFNSEKFAERFSSVLSKYDYIVGDWGYDQLRLKG
FYNDDNPLFEPELGADTIEDYLFEYCNFGCAYFILHNDDVCIPRHSYRQRRKKTTPVIHERRRQVKQPNVRQRHNQRAER
VKNGHRQKFVIHQRKKRS
>SEQF1778_EEI65918.1 hypothetical protein HMPREF0534_0761 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFCTSDTHFFHDSLLGTNKFAPRPFNNVNEMNQTIINNWNDKVGENDIVYHLGDIALYFTKPQRNAYQAILEVLLQLHG
HLILIKGNHDNRALFKYLESNNYEFNGLPKFQFHDVGVLLKYNHRQYYLTHYPLMLGIAPQIINLHGHIHHYSVPIKENI
NVGVDAPELDYLENKPKFGAPLNFHEIEEIVAQKAMKYPGQK
>SEQF1778_EEI65919.1 acetate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKTIAVNAGSSTLKFKLFDMPSEEVVAEGTIERIGEKMGHAKIKYGNGQKHEEDKPFVDHAAAVNYLLDKLIELKIVAS
YDEITAVGHRIVAGGEFFKDSTIIDDDVISKIDELSEYAPLHEPAELVGIKAFRKVLPNAFAVAVFDTSFHVDMPEMNAL
YSVPYDWYEKYGARKYGAHGTSHRYVSARAAEMLGKPVEELKLITMHIGAGASITAVKNGKSFDTSMGFTPVAGITMATR
SGDVDPSLIAFMQGKLNLSSDEMIDILNHKSGLLGISGISPDMRDILAAAEKGDDRAQLALDIYVNRIVRYIGAYIAEMG
GADAIVFTAGVGENSVPVRKMITDKLDYFGIKIDQEKNDCHGVERDLSADDAKIKTLLIPTNEELMIVRDIERLKKNN
>SEQF1778_EEI65920.1 hypothetical protein HMPREF0534_0763 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQKIYQELNLQNVKPEIIRQIIQLSFLKVIRKDAIQANHQMTPDTIGLIMAFLIEKVTKIKEIKTVFDPAVGTANLLTTV
MNQLKVNGDKDIVGYGIDNDEDMLGVASVNTELQHLNVKLYHQDAVTALDISQCDLAISDLPIGYYPLDENAKNYQTRAK
EGHSYVHHLLIEQSMNYLKPGAFGVFLVPSSLFQTKESQSFVKWIQSVAYLQGLINLPAELFANPNAQKSILLLQRQGGD
SKQAVKVLLGEFPSFKDKAKFASFMDDISKWVTTNLR
>SEQF1778_EEI65921.1 hypothetical protein HMPREF0534_0747 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALSKQERKEMARKAMEKRGSKKPDGSGFAKIDADAKKLSE
>SEQF1778_EEI65922.1 NLPA lipoprotein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRKRRTGLIIFSILVIIVVVGIGGIIHQRFEKTSTKTVRLGLVGTDSEPVWDNVRKRLKKQGINIEYVVFNDYVQPDVA
LKEGKIDMHSCLTRYYFESYNKEQNAHLTSIGNTVISPLGVYSHKYQKIQDLPEGAIIAIPNEPTTLGRGLNVLQSAGLI
KVKKGSGIKPSLKDIVSNPKHLQFKEVDPATTARALNSVDASIINGNYAVAAKLNPKKDSIYLEPVNKAAKPYVNIIAVQ
EKNKDNKVYKEIVKAYQTEQTEKAINKTYKGAQEAAWPIYGRN
>SEQF1778_EEI65923.1 peptide-methionine (S)-S-oxide reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVVIKKGCNNMSLDTAIFAGGCFWCMVQPFDTYPGIDKVESGYTGGHVANPTYEQVCSGTTGHTEAVKITFDPDKISYKD
LVEIYWHQTDPTDASGQFQDRGDNYRPVIFVKNDEQRKTAEESKKTLQESGRFGDAKIVTTIEDAQPFYPAEDYHQGFYK
KDPQRFALEEAGGRQQFIEKYWKNN
>SEQF1778_EEI65924.1 hypothetical protein HMPREF0534_0750 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRDKQSIKDDIVQRLATVIDPELHIDIVNLGLVYTIDLDNDGICLIEMTLTTMGCPLTNVLADMVTKAVKEVPEVKNVDV
EFVWEPAWTIDRMSRFAKLSLGVH
>SEQF1778_EEI65925.1 hypothetical protein HMPREF0534_0751 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKGIKAFHYGKSFIFTFKKQICAKNIKFLKKFKKSGKKVVKLFIIIGSYLDKEHAYGECRN
>SEQF1778_EEI65926.1 hypothetical protein HMPREF0534_0752 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASVETNSDSLDVTQVINQQIITKIKYLRRFNDAISNHRDREIYQLLDNQRYAKEIEHREQQPNDKGVMNLVDDLADQLS
NYLSENLIKYLGKTYPFFYYEEYQTGHYRIYFGNWWDRRQFGELDVLNVRFSFDQTEYDKLRTAFELARDNKRYNSDRIS
KISSENDRLQDLIDHQREREERKEALQEQLKEISSRSGIWESSRNKESRQELVEQLQKLEDQEEEARNAAQTIKDNERVV
LSLSKENTILSYEQKSIIDTFGSFEDFELANRNLYANYLASLNGSEGKQVDDDEQ
>SEQF1778_EEI65927.1 hypothetical protein HMPREF0534_0753 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNNRIVTSPSERVQALSDSFKDVLSLGQKYVDLLDQLAQTKDAKNLLSAANKLTKMDLANAFINFPPHYKAADYYLIFM
DRLLKMHGDTAVNVAENELNHEFEATVAAIGGEAIFKFEIDSRGEAAFTEQSQHEPLFYLSLEDKLMQFNNRALVNYFIV
YALKQHTDLELRDAVKPLIDFAKYLQKDLDFTIDLGILATANDRRFMLNKPELPLTVIDRLFVATADEDYMLMNLPRNNG
AELLLDQGTKLDIAFDPDDYSQEWAFLVKDSDEQVSFFDVLLHYDLVREWYLANRSALAVRTDHMEIVDEESPATTEVAE
DESSDEVSSAEPSEDPTPNEEE
>SEQF1778_EEI65928.1 hypothetical protein HMPREF0534_0754 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDITKMLHQIIDLELKIDDEKELMIGPETRKQTIFVDLDISLSNMAEAAGWYKVVNPSEVDKEDLLKSYVESVALLLLY
SAKMKWTHLVVLDDQAWQRITDAKRSTKLADLNKSYLAIKHFLSDAYFNHQQESFWHAWHLLLKMGISDWQLTPDQISDA
YQAMIDQH
>SEQF1778_EEI65929.1 hypothetical protein HMPREF0534_0755 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLPFLIIVLILVASVIGEFMFGSLSNQETGKHSATTNRLRDRKA
>SEQF1778_EEI65930.1 transcriptional regulator, TetR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAANKTDPRVIKTRNSLRKALVYLMRRKKLEDISVQKITETANITRGTFYLHYKDKQDFIQSAIQEIIDDFFNQVMIDSN
FSKERTVKVFSLRKAFQYIENNADIFDVLLNNEKNNFFYEQLYNRLANEMTHFNEQVNKNQQLKVPLNLQISFVDSAFLG
LVSRWLEDGMIYTPRYMTQSVAKMLNQFSSENISLVSFLMVN
>SEQF1778_EEI65931.1 hypothetical protein HMPREF0534_0730, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
TNKALMLNPSVLKIVKPEFLNLAFLIGIIFLLCYSKMYESDITERWREEK
>SEQF1778_EEI65932.1 HesB-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLIITDAASQWFRDEMGLESGNGIKFYGKTYGQTEVHHGFSQGFTREDTPVDPILEVKKDGINYHIDSLDEWFFKDLIT
TVDYDPQADGPVFHFQHEDGDTPDVAGFVNDADDHSDNKADASTGASQH
>SEQF1778_EEI65933.1 bacterial membrane protein YfhO [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFLYQHHRLYRRKILIASFLLPVILMACYFAYRQITPFGKSSLLTVDLGQQYVDFFSYLRNTILHHPSSFFYSFSKGLGG
EMFGTNAYYLLSPLNLILLFFPAQHLATGITIVTLVRYGLAGLSFAWLMQKTDLQQGWRILAFSTVYSMNGWMIANQLNM
IWQDALILLPLIIWGLLKLIYQNRVGTYIAWLAVMLIDNYYMGWMIAIFTFLFFLWQTPALASWRQRGVIFLRYLGSSLL
AVGISAVILLPTFYALMQSKGIYTETKIHSRFEYFAPKMLGKLVPGSFNFNQMPSGQPNIYIGMLLMLGACLYFFNNRFD
LRRRLIGAAISIFFIFSFCYEPLDLLWHAGQFPVWYPYRFSYLFSFWCIYLAAKVLQPDFKIKKRSALILTLLIIAIYWY
VGTLNLSYINSNQRNIGLCFSLIAVSCLCIPRTNSPRLYDALLVLLAVCDISMSGYTALNKISYVSQPEFGNYTIALDKS
VKKLKKHDPSFYRVAKTFMRTKDDPFQADFNSGDHFGSTLEPPIPAFMGAIGQPDGDGFVTYTNGTQVSDALLGYKYTMN
ARNTSAGQALPLSGFRPDWYSYPLVGSTSAVNLRENPHALPIAFGANAAILHLQRTTMDPLNYQSQIFQTLAGRPTLHSL
FAVQNFNSVKFNNVQSAKQITGTIFRKQNLLKPASVQLEFIPPTNDSYYLTLGPNVEDNATITMNNKKFTQYDTFRNTVV
INVAHDQKGQKVLVNLQLKKATLWMQNVSIYQLKQRPFMASLKTLQESPLKISSYRSNRIVGTVNLQRNQRVLMTTIPAA
KGWHVKVDGKSTTPQTVLNTFMAIPMSPGKHRVEFYYRPPFLILGLIITVISLGLTGWWVKKEHQTRTMFD
>SEQF1778_EEI65934.1 penicillin-binding protein, transpeptidase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKENYKTVKFFDRIMNLFGSRTKKRQNAQSIIPFRLNMLLWIVGILLLALTIRLFYLQVLQGTSFKAEVKRSDTTTQTNN
VQRGMVYDSQGNVLVGNQTHQAITYTKGANVTTDQLYQIANRLGKYVSVSNKNSRLTDRNEEDYYLADKERLKSVLKHVK
TSDVDSEDTKYNKALEYLSKHPDSWELTDQQKNNARIYAAMSGAYSLSTTYIKETGVSAKELAAVGEHLNEMPGVKIGTS
WTRNYPQGTDIQSLTGTVSTTGLPSDEVNSLLAQGYSRNDSVGQSYLEKQFQSTLAGSKSQTEVTTNGNDVTKEKTKYPG
KKGDNLVLTINSKFQKQVQSILKNNYSAAGNQYSTGVYAVVMNPNTGAIYAMAGIDRDPATGKETPDEIGAINHPITMGS
VVKPAMVMGALMDGVITPTNNTLTDMPIKLAGTSSKGSWFNHGGSANMAINAATALEVSSNSYMMQLLMKEAGMKYTPNA
QITMKPSIFAKARGYFNMFGLGVKTGIDLPGETSGYTGPADQKHIGSALDLSYGNYDGYTLIQLAQYMSTIANGGTRMRP
YIVKEIRGTKANGQLGAVEYTTKPQVQLTIPASKADFDVVKQGLYQVVHGSNRYVTGKALASVKPSVSGKTGTAETYYKS
HSTTTLSFAGFAPSDNPQVVVALVIPGASNSDGGANLTMAKQIFEAYWKTVQSPKGFGD
>SEQF1778_EEI65935.1 ribosomal protein L33 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVNITLECTSCHERTYLTSKNRRHNPDRLELNKYCPREQKVTLHRETK
>SEQF1778_EEI65936.1 5-formyltetrahydrofolate cyclo-ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAYSKKELRQAYIARLQQLDLNTRLYEERKLASLLYDQPEWTGAKTIAVTLSQSFEIDTAPIILHARHKGQQIVVPRTLP
HRQMEFVELNEDTDFDETSFGILEPHDGKVYSPDEIDLMVVPGVAFTASGNRLGFGGGYYDRYLKNYKGPKVSMALTTQL
AEESEWEPEEFDQRIDKVLYLPGI
>SEQF1778_EEI65937.1 peptidase, S54 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRTQGLRLAPVTLTLIIFQILVYCWLVYAGGSTNTVTLLNMGARSTPLIREGEWWRLVSPVFLHVGLSHLVVNSVTLLYI
GRYIEEFFGHWRMVIIYFVSAFFGNLTSAVFMPSTVSAGASTAIFGLFGAFLMLGVCFHHNVIVRVLSRTFLLFVIINIV
MDFFLSGVDLVGHIGGLFGGFFIAFIVGAPMLGTVDYLKRLLSGAVLTVSLVILTLELK
>SEQF1778_EEI65938.1 hypothetical protein HMPREF0534_0737 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIASRNYRTLYDVQQLLKEFNVFVYVGKRLYDIELMAIELDNLYQSGVVDNSTYTKAKIVLRKEHREEQTRIKRGKLY
>SEQF1778_EEI65939.1 ROK family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKLIGVDLGGTTIKFAILTENGEIQQKWSLRTNILDDGSHIVPDIINSINHHLDLYKMSRDQFIGIGMGTPGTIDREK
GTVIGAYNLNWKTTQNVKEEIEQGTGMQFALDNDANVAALGERWKGAGNEGDDVAFITLGTGVGGGLIFNGKLIHGVVGA
GGEVGHMIVKPDGYLCTCGNHGCLEQYASATGIVHIAQDKAEEYEGNSRLKAMIDNGDEITAKIVFDLAKENDYLANTVV
DEVCFYLGLATANLSNALNPEYLVIGGGVSAAGEFLLKRVKQNFEKFAFPTVRTSTQLKLAELGNDAGVIGAASLARQFV
NAD
>SEQF1778_EEI65940.1 rhodanese-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIVVLGVSSGLMILNAVIIIILLVWIFSWAFQTYRRKRYATVLSQDDFKQGMRKAQVIDLRQENDFKQGHILGARNLPYP
YLRQQYGELRKDLPVYLYDEGMTLSTQAAAFLGKHGYNHLYILKDGYRAWDGKTKKSKY
>SEQF1778_EEI65941.1 hypothetical protein HMPREF0534_0740 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQLAKGILVGSLATVAAIASGVLTFHKTVIKPAEEEEEKFDQNRRAAIRKGRSAHQL
>SEQF1778_EEI65942.1 tRNA dimethylallyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKVIAIVGPTAVGKTALSIKLAHEFDGEVISGDSMQVYRRLDIGTAKVTPEEMGDVPHHLIDICNIEERFSAARFKKLA
DQKIDEIAQRNHLPIIAGGTGFYLQTLTDNLALGSDQFDQQTLEIRNHWKRVAEEKGAEYVWEQLNDLDPVASTRIPKSN
TRRVIRALEVIKKTGQLFSNQPQFKATNDFLLIGLTTDRPVLYDRINKRVDLMIQNGLLEEAKWLFDQGGENLPAGKGIG
YHELFSYFCGEISLAEAVEKIKQDSRHYAKRQLTWFRNKADTHWFDILRHPDDINQIKQFINDWLKK
>SEQF1778_EEI65943.1 glutamine synthetase, type I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKHVFTKDEVRQMVKDEDIHFLRVMFTDLLGTIKSVDLPVSQLDKLMDNKIMFDGSSIDGFVRIEESDMYLYPDMSTWL
AFPWGAEHGKVARVICSVYKTDGTPFEGDPRNNLKRVLEGMRKMGFKDFNIGPEPEFFLFKTDEKGNPTTNLNDKENYFD
MEPADPGEDCRRDIVLALEKMGFDVEAAHHEVAPGQHEVDFKYSDALEAADNIQTFKFVVKTIAKKYGFHATFMPKPLSG
INGSGMHLNMSLFSQDGTNAFFDENDKDKLSATAYHFLGGLMKHARSYTAICNPIVNSYKRLVPGYEAPVYVAWSTSNRS
PLVRIPSDRGMGTRLELRSADPSANPYLAIAAVLEAGLDGLRNNLPPIHNVDENIYTMTKAERAEKDIHDLPDTLHNALK
SLANDEVIKSSMGEHLYNSFMEAKTREYASYRQHVSDWERQHYMEQY
>SEQF1778_EEI65944.1 glutamate--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDQKVRVRYAPSPTGFLHIGNAQSALFNYLFARHFDGTMVLRIEDTDTKRNVEDGEASQRENLHWLGIDWDEGPNKPNPK
YAPYRQSERNKEGIYHKYIQELLDKGIAYKDYSTEEELAEMRERQKANNEPPHYDGRWYGKSEEEQKAAEAKGLKPTIRF
HFPKDHDYEWDDIARGHVSFNSDNLGGDFIIEKSDGMPTYNFAVVVDDHTMDITHVLRGADHISNTPKQIAIYEALGWDH
PTFCHIPLIFNPKTRKKLSKRDKDTLQFISEYKKHGYLHEAIFNFIAFLGWSPVGEREIYSKEELIKVYDPKRMSKAPAY
FDQKKLDWMNAQYIKSMSIDKLTDRTMELIKEGETEEAKRLQSIPEDQLTELLKKTIKVHQRDINKLLEVIQYAWSYYTV
LDQSFNYDLLKDNEDFANEDVLAVLKGLKAKLENGGDDLDYSQAIKEVGKDTGIKGRGLYFPLNLAFTGSTSAPQIYEIM
DIYSRDTDIELLDRMIKAFEN
>SEQF1778_EEI65945.1 putative aromatic-amino-acid transaminase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEHMRKILNDVPTLKVFDFSQYVSKIPGIIKFTIGEPDFDTPEYVKRTGIESIENN
>SEQF1778_EEI65946.1 hypothetical protein HMPREF0534_0745 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLRQAIADTLANKYGLQYDSATEILVTNGVTEGGFCCNYCNY
>SEQF1778_EEI65947.1 aminotransferase, class I/II, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIAGGTPVEVDTSKTGFKLTPALLKQYLDKYGDRVKGVVFVNPSNPTGIAYTQAEMNELAALIKGKPIFAICDEIYSELN
YDGEYSSMAKIIPDQTILANGFSKSYAMTGWRIGYLCATAKVTDLLFKVHAFAVTDIATFVQDAAEAALKAGDEATKEMD
AQYIKRRDYMYKRLTEMGFECSQPMGAFYIFAKIPPFLDQDDNKLIYQLANEAKVAVTAGSNFGKGGEGYLRFSYATSIE
QIKKGMDRLAEFC
>SEQF1778_EEI65948.1 hypothetical protein HMPREF0534_0729, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
NVKADTPTDNVPVVKTTNPTTGDANAELASQEKAAQAKDNGNYGYLDSAQVVNNNDLHVSGWQATNQAAGKDNRYLVAYD
STTNTELGRTSVTESVARPDVAKAYPDVVNAKDSGYQATMNNLDWSKVKSVDDQIHIVSRYSDAANGEGNRVDNWSQPIN
LDKGNYAYLDNFGVKDNQLQVSGWNATNKALGKANHYVILYDRTAGHEITRVKVEPTVRPDVAKAYSQVINAKDSGFNTA
FSLAGIDLNHELQIISRYSDAANGDGNYVSYWYAPQKFAPANTSNQGSLDSFNLSNGQLIVSGWHATDYSQVENNHYLIL
FDNTNKTQVKSIKVTNVARPDVAKAYPTVATAGQSGFNANFGTVNLISGHSYSLVSRYSTLDGGNGDNGQSKTTDYWFNP
VTLDQQASYVDSFTKTDKGYNVKGWMVSDQSINKPNAYLILLNDGQEIARTKVELTDRPDVAKVYPSIYNSQKSGFNGEF
KVDPTKANGNLKVIMQFAGDDA
>SEQF1778_EEI65949.1 hypothetical protein HMPREF0534_0726 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEESKLQERVYFDRDIELGQDIIDGTEKFYLNKEVIKDDDVGLSAKQKFESKLKASLSRMLSQKYQNIIILFGAGASVVP
TSNINPRPDPKYGKVVSMLANDVLNQLKGTKYYTLNRLAELIKYPTEEFIDSGKINDKIFNLEKFISELQMAVALKNNPR
TKLAKYLEKIKEIITENVKYGGTSSKFKHAQLLNLMNARINREQKLCVVTTNYDTVIEDQAIDTGFLVIDGFNYSRFPEF
DDDLFEWNFVKSVPFVSTNELIYKDKVLDLLKIHGSIDWFQRNGKIIRAKNGENTNRVMIFPSSNKYMQSYQDPYFELMS
RFQSKLKQPNTLLLTVGFSFSDNHIAQMIIQALKHNTSLNCLVTDYNISPQNNENFDELVKLKDKLGTIAFLGKSLNSQD
SLVKYLGENDDENR
>SEQF1778_EEI65950.1 hypothetical protein HMPREF0534_0727 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIDELYHNYNKEEFYLGRVSQVTLDYCLVQAENLTLLQTKIISNQEIFPKTINYLVVINDERGIFLGKVIKSQIRNTTA
THDALLYDDRQHICPELTIKIVGLLQKNQFRLPNNNTVGLTNKVYIATSEITKLYLDSFDLMYRNYSHDNILDDVAIVKS
FGTQLQFSTNINTIFDRHLLIVGATNSGKSTSALRILEEARRKNKKFILIDPTGEYHQSFSKCENVESIDLGNSGTIDPG
KIKLNQWKTLFQTNENSQGPELMQAINELKFQYKHGKNEIYPKLGRNFTDVEMELNTFEIENDLDNLSFNQQLLESQIIA
DSVKIANYGKNEGKYVNDSFIRNTNEWLIQKIKYIRRTTKIDIFFNNDPNKNLFQSLDEFLGNNKSLYVDISTLGSSDII
GSFIIDIISEYLFETKTVENKGFFIYIDEAHRYLRDKDTLAMGLENIAREGRKKGIFLFLTSQSPKDVPDTIVSQIGSVI
VHRLTSEEDIYTLRNYLSKDAIAKINSLNKGEAILSSINLLENLFLKFNKSTLPHSNNTQLL
>SEQF1778_EEI65951.1 hypothetical protein HMPREF0534_0728, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
LNENNNGLLRRDGLHKGRDLRHLADEEVAQIMSYRNNIPRKSLGYQTPYEVFMKYVTDEQLLFF
>SEQF1778_EEI65952.1 hypothetical protein HMPREF0534_0720 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRDWIHTNDHSRAVWDILTKGKIGETYLIGADGEKNNKEVLEMILELMGQPKDAYDHVKDRPGHDLRYAIDATKLRTELG
WEPEFTDFKTGLQHTIDWYTEHQDWWKDEKAAVEAKYAKNGQ
>SEQF1778_EEI65953.1 dTDP-4-dehydrorhamnose reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKILITGANGQLGSELRNLLDERGGAYDAFDSNQMDITDQAVVNEKISALKPEVIYHCSAYTAVDNAEDVAKDLNWQVN
ADGTRNVAEAAKKVGAKMVYISTDYIFDGTNEGEYEVDAPTNPRNEYGKAKLAGEKAIQETLADYYIIRTSWVFGKYGKN
FVYTMLRLAKDHDQLTVVNDQFGRPTWTRTLAEFMTYLVDHNQPFGTYQLSNENSCSWYEFATEILKDKDVEVAPVDSSA
YPAKAYRPRHSVMSLKKAEDTGFEIVDWQTALGEFMGEIG
>SEQF1778_EEI65954.1 hypothetical protein HMPREF0534_0722 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKLTWKNIQEHGIELWEAKKNEFIKAVTKDSDFSWILDGDKKLLCKKVKEKASINYGIPTQITGNPQIARCFLCLFNPS
VIDCLRYFSSLVAVEISYEIMVKRPEMLFFFCP
>SEQF1778_EEI65955.1 integrase core domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSMRKDVYERMRYFVVEKIKPNYSAIARQYGVDPRTVKTAYLRAQNGETIVRNQRKRRSKLDGFQDIIKDKYTAGCSARA
IYDFIVEKGFTGKYTIVKDYCRHFRKAQTKKATIRVEHTMGLSAQVDWKEQVTMTDQNGLPHTFSIFLYVLPYSKFKFLK
LTLDQKQDTLFKCLFEAFKATGGIPKEIWFDNMSTVVDHKLSDFHHYRFNERFLSFSHDARFHPIACRPFRPQTKGCVEA
LARTMGRLKPYDGEFSTINDLNDIVDRLAKRFNHEKSQSNNQKPVELWTKEKEHFRSLNHDLVRYFHSDQTRKVS
>SEQF1778_EEI65956.1 RmlD substrate binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNKHEIVYNFKQPDITDQAVVNEKISTLKPEVIYHCAAYTAVDNAEDVVKGHDKLIVVNDQFGRPTWTRTLAEFMNYLV
DQDQPFGIYQLPNEGTCSWYEFATEILKNKGVEVAPVDSSAYPAKAYRPRHSVLSLKKAKDTGFEIMDWKVALGEFIGEI
KRQNEI
>SEQF1778_EEI65957.1 hypothetical protein HMPREF0534_0725 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFDNKISWDGIFTFLTVVITCIALVCTNRHANKSETISKEAYNIEKNNFQNEQQNRNVSSWIESNEENNGKTELHISIN
NNSQAPTYNMFVVVKKFGNGYIVNSSNYYKQLMTVKPGKTDDLLFDFDKNEILNDQKTISEYYTLITFKDNDNKYWVLDQ
QKSGKPQKLNNVNNDKEYYDYLYKTYRIYPQIK
>SEQF1778_EEI65958.1 cell envelope-like function transcriptional attenuator common domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSDENNQPLNNNDDGMQQPEHHHHHHRHHRRHRGWKIFWSVVGVLVLVALFFAGMAWHNLKSTTDDMYSSAGATKSRDAQ
KVLDQKKPVSILLLGTDTGALGRDYKGRTDTIMVMTLNPKTKTTTIVSLPRDMKVNLPDYPQYSPAKINAAYTYGGVKES
INTIQDHFNIPIDYYVLVNMGGLEKAINQVGGVDVKSPLTFDYEGYHFEKGETYHMNGKKALAFSRMRYDDPDGDYGRQQ
RQRLVITALLKKSVSYKTVLNRSFLRSVSDSSQTDLTFNDMIRLAQSYRDTNEHIVQDHAQGRGQNEDGQAFEVVPTSEQ
QRITNLLQNSLKN
>SEQF1778_EEI65959.1 chain length determinant protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMLCRKHIKMLIIWTLLAGVLGYVVAQFVVVPKYTATTEILVNQKHENNDNGQAYNNQQADIQMINTYKDIITNQVILSK
ASKQLKNPVRVIKPAQPAEYRRNADGTRKLIKEAQPAVVERGGKSYNLSTAELKEAISVQTQQNSQVFSLQVKTDDPQES
AVVANTVANVFKQQIKKIMSVNNVTIVSRASTPDEPSFPNKKLFALAGAVLGLILSFLYILLGDLMDTSVHDDDYLTNEL
SLTNLGHVNHIEMSRDFKVNNQESRRQNNGNRRV
>SEQF1778_EEI65960.1 capsular exopolysaccharide family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNGAKLITVAHPKSPISEQFRTIRTNINFMAIDKPIKTLAMTSANVSEGKSTVTDNVAVVWAQTGQRVLLIDSDLRRPT
LHATFSKNNQHGLTTILTSGTNSVDLHEIIQPSGVNNLDILTAGPIPPNPAELLNSQRMKTLLDTVKGIYDMVIVDVPPM
LEVTDTQILSRHLDAVVLVVKQGQTQKLAVKRAVELLNLAHANLLGYVMNDVNADGDAAYGYGYGYGYGENTK
>SEQF1778_EEI65961.1 NAD dependent epimerase/dehydratase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKVLITGGAGFIGSNLAHALVKDNDITIIDDLSMGKEENIADINVTFYHHDVCDSAFMHKLLSENEFDYIYYLAAVSSV
ADSVVRPLETHRVNQESVVDTLDYIRAEKLPIKKFLFTSSAAVYGNAPDFPKMESSHVDPLTPYAIDKYASERFTIDYGN
LYNLPTVAVRFFNVYGPRQNPESPYSGVLSIITECMKNNKPFTLYGDGSQTRDFVYVGDVVNALIKLATETDKPTVYNIA
NGGETTLINVIRTYENISGIKLNITYKDGRNGDIMKSKADISKLKNIGFEPQWSLEDGLRNYWKYYSEN
>SEQF1778_EEI65962.1 bacterial sugar transferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQATVEEKNDSLEYSFLEKIGTPISKSKLIGKRICDIFFGVIFGIISLPIILVFGILIKLTSKGPVFFKQERVGYMGKPI
TVVKLRSMRNDAEKKTGAVWATKDDPRVTSVGRFMRKTRVDELPQFWSIIKGDMSLVGPRPERFVLTEEFSQKWLDFPKR
LRIIPGLTGYAQVNGGYDLKPNEKCKLDNYYIEHYSLGFDFKIAFKTIRIIFTGDGAR
>SEQF1778_EEI65963.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKRPFFSVIINTHNSENTISRTITSVYEQTFNNFEVVLVDDASDDSTLTIVNEYKKKFSNRFKVISITKNKGIASSRNI
GIEVSSGQYIAFLDGDDLWTRNKLETEYEFLSKRNVKWVFSNYFVMDKSYKCLGKRIREPGLYKYSDIIRAGNPVGMLTV
VISRDLAIQNKFRNIHHEDYDLWIRLAQKGINGYLLDNCLAFYMKQNNSMSSNKIKSVVWTYNVYRNNGIGIVKSMSILM
KYIKNNIINRLREYKITLYKK
>SEQF1778_EEI65964.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENLENKLLTIVTITYNRRNFLKELYQSLLNQTSMNFKWLVIDDGSEDGTSDYINTIAKSNNLFQISLVQNKNIGKYKEI
NRVLSMINTTLTIFIDSDDYLVSNGVDMIEHTYQKYCKNHEIGSFIFERGDGNEQIPMHKIDREFIDRRYYYLVKHKKYG
DYSDVFVTDAVKEFRFPEFENEKFMSEGPLYYWFSKKYLSVFVPKILTVGAYRNGGLTKNIRRNQIKNYNGTLYETNLYL
GRDTPLFFRIKEATLYNYVSLYSPKSYSSAVSLSDHKSILLLTLIPSIVVVSISKLKGI
>SEQF1778_EEI65965.1 glycosyltransferase, group 1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKKIAVFIPNLSGKGGMETAIHNLYSIMENDTEYDFTFVFVEGVQDTSYLKLFDEEKLIYHPQTNIILEFLFLRNVLER
EKFDILIGTSKRLMILLSYLRKIMFINPIIISWLHFSISKEGIYVDLSKYGDAHFAISKGMALQMSEMGVDSNKIYYLPN
SVDVMTPSIVVPRKTKFIYIGRIQFLKQKNLKELIDGLALLKFEWSMDVYGDGEDRSVCEDYINDRYPSLRNKVSWKGWV
KDPWVNISEATALLLTSSFEGMPMVLIEAISRGLPILSSNCPTGPEDIVKNGENGYLYKLGDIKDFSEKLSLIVNTNFDR
KKIVESSYYFNSESYRKRLKNYLNELSDNNE
>SEQF1778_EEI65966.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKLEPVVSVIVPTYNSERTIEKCIESLLGQTLPNFDIYVIDDGSTDKTFTCLKKFDADHRVHIYTQANKGVSSARNNGL
KRVRTKYITFVDSDDFVSPTYLERLVHGIESRPVEMAICNIPSNFMFLSKNTVLDSGEVMNMLLSPYGMGGYLWNKIFES
KIIRDNDISFNEDFFVAEDLIFCEQYLVHAKKVNLLTTHDYHYNDLNGVSKNIKFRENNVDFYLNYFNALKYILSMETNI
NNIEKNLKARMCDLGCDIVRIINLNKNIENYNVKKELLNFINQNKGIFFESSIINDKRKILLKLTLYYPILVEFIDRYKN
R
>SEQF1778_EEI65967.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKEKSYNVSIIVPIFNVEKWLTRCLNSICKQTYGEFEVLLIDDGSIDNSGEICQTFVSKDNRFKYYKKKNGGLSDTRNYG
INRAKGKYFIFVDSDDYLTPDYVEMLYSGIQKNNVDAVICGISRVDEDGKILNNNCFNVTDKTFLSGKEIIELSFDNKSD
GGDLVCAWNKIYDRKLFDNNLRFEKGRYYEDGYIFPNLFLRVNKAMIIHRPLYNYVQRNNSIIHSSMNIKKIKDDDASML
SWIDLFKNVDKKLYILSIQKYKNWIIYKWYENRKIILNNNMGNYLQKQYRLYAKEKYPMSIKSKIKDTISIINLDIVYYL
KIILGK
>SEQF1778_EEI65968.1 hypothetical protein HMPREF0534_0712 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDCIPSKIKKYLPKSLEYPGLYIKVTQNMLIIYTTKLILAEIYPRDSK
>SEQF1778_EEI65969.1 hypothetical protein HMPREF0534_0713 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQSIPLSQINYYGAGKNLFVINFVFWIIAKLGIYQLLPALSVSTVYGIGAYIIINSRLLQNKQTNDMSIFLLLQFMQLSF
FGIMDNVRNIWAFSLIILAVYRELIQNKRNLITILLYILPCFMHNSAFLMVAFRLLIPFAKKTKYALPLLTLFVGQGIEL
LYLHLNLFPMFIANAINSSYQYLNNSVATEWGMKVASSSFFRLQRVIEMTMAIALLILFYLIQANMNNDMKNFSYFTFLI
LVAVLACNVFTAPHYWRYYSAAMLCVPVMINYSFSIRSRSLTIQLLQWSYIFLSLVMYSLNVWSAYSSY
>SEQF1778_EEI65970.1 polysaccharide biosynthesis protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNRENFFSGFVWKFLEQIISQIVSFTISIVLARLLTPHDYGVVALVNVFIVIAGVFVTSGFSTSLIQKKDADELDFSTIF
YCSLALACIIYLILFVSAPFIANFYHNMQLSLVVRVFGLTLPILAVNSIQQAQVARHLAFKKIFFSTTVATVISGIFGIA
FALMDFGVWALVFQYLISNIASMFVLFVQISWRPKLMFSLKRAKSLMSYGWKVMAADFLGTFFAQLRSLVIGRFYAPSAL
AFYNRGQQFPNLLSNNIDTTISSVLFPYMSQAADDPKKMKEIVRRSLRISSYIIMPLMLGLMVTSKPIIILLLTSKWIDA
VPYMQWLCIASALSIITNTNLQVMRASGRSDILLRIELIKKPVYLLLLLISIKISVLAVAITMAIYSLYAAIVNIRPNQR
IIGYSYREQLRDIAPSLILSIVMAIIIWPISLITLPAFDTLIIQIICGAVFYLLCSYLLGFEAFKYLNDFLITKIKGTNE
VDKNES
>SEQF1778_EEI65971.1 glycosyltransferase, group 1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENIILSNKRKLAIITPGFKPVPAIEGGAIEQLITDMLNGNESVYAYDIDLYTIYDHKLEEESFSHTNIIYVKRRWYDVF
IRGINYIKRRIFKKSKHKFEYLSYIMSRAFKTNYYDIVLVENNMDTYISLLKKVKNEKLFFHLHNDFDCDDPAKTLSKTK
KIINSANGILVVSNYLKEKLESHNADNVTVVHNFVKSQEFNEAITNRENEIKEKYHLKNDDIIVLYVGRLEKEKGVDKLL
EALLLLKNSKVKCLIVGDFLNKTKYGKYWDNIRKMLIKLQGRVFLTGYVPNSDLVNFYAISNFTVIPSQWEEAFGLVALE
AMKMKKAVIASDSGGLLEVLSPQGSINIKRDDNFVSNLASAINRLSENKKLCLQMGEANYKRSRIFPQSDKEYLYMIVRA
IEYGSKSINNQN
>SEQF1778_EEI65972.1 CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLISSLKFRLFKGTLGIVSRITNVNSRKIVVDNFFGNGYSDNPKYIIDELLKLDSSLDIVWIVKKNHKLHFPNGIRTVK
YRSIKSAYELATAHIWIDNIKNNYKGKKRPKQFYLQTWHGGVGFKKVEKAAIDTLDESYVSASKADSEQTDLIISNSDWL
TNNYRSNFWYTGKIVNTGLPRNDIFFGDLSKVKNKVREFYGIDSDTEIILYAPTFRNYIGIKEQSDVCSFDTPKIVSAFE
EKFNKKYVLIKRMHPNIADQIPIVEDSILRDGSKYPDMQELLVAAHILITDFSSCAFDFMLKSDKVFLFANDYDNYNLYE
RKMEFDIKNDLPFSFANNEAELAKNILLFDENIMSKNSQKFMDSLNIVDDGKASERVAKILFDRIHSF
>SEQF1778_EEI65973.1 putative 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNIAIILAGGVGRRMGFDIPKQFIEINGKPILAYTLESFQNHPLIDAIEVVSVDGWLVTVRSLAKKYNIDKLKWITTGGS
TGQESIRNGVYNLKDKINDNDNVIIHDGVRPLVNDHVLTDVISKCTEYGNAVTSMPYYEQIFVKDSNDPTTTNKYIPRDK
LRRVSTPQAYRFDLLYQKYNEAFSKNVGVSGSSYTNTMMTDLGVTLHFADGSDKNLKLTTKENLETFKAYLLSEHYKEN
>SEQF1778_EEI65974.1 NAD dependent epimerase/dehydratase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNLVNNTIYVEELKKYSKKLPNFTAFKNKTIIIAGATGMIGSCIIDILMLQNKLTSLNCSIIALGRNEDKAKKRFIDYW
DSAFFTFLQCDINKNIVYNGKKIDYLIHAASNTHPLAYSTDPIGTIMTNIIGTYNLLNFVAKHDIKKSAFLSSVEIYGEN
KGDVDRFSEDYLGYINSNTLRAGYPEGKRAGEALCQAFIAQEGLKIVIPRLARVFGPSMLMSDTKASSQFIKNAINKEDI
VLKSRGQQQYSYIYSIDAATAILFCLLNGTSGEAYNINNPLCDTSLRALAEEIAKIAHTNISFELPDEVEARGYSTAKKA
LLDPSKFEKLGYPFENTLSESIRSTISILSKY
>SEQF1778_EEI65975.1 dTDP-glucose 4,6-dehydratase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METFKNIIVTGGAGFIGSNFVHYVVNHHPEVEHITVLDKLTYAGNPTNLDGLPKDK
>SEQF1778_EEI65976.1 putative L-serine dehydratase, iron-sulfur-dependent, beta subunit, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
GNNNMKNNYKSVFDIIGPVMIGPSSSHTAGAVKIGRVANKLFGMVPPKVTVHYYGSFARTHRGHGTDYAIAAGLLGFASD
DSRIPSAPMIARQGGMDLRFVEEEGESPIHHPNTAILQMTGDKTRVTVAGCSIGGGIIEIRAISLDGVDILPAGPLPIVI
FRDYSKQMANALAINTDLEEKAPFTRRQVLRADDCDIYVYDIKKPMQPATIAYFEKKYPAAICL
>SEQF1778_EEI65977.1 L-serine dehydratase, iron-sulfur-dependent, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLGERAMYQSVKDLVRTAEIQQKALSELVIEAECHESGSNRKEVWQRMRSNLLTMRAAIKQGENGLGVRSKTGLTGGEA
IKLKKYRAKGKTLSGDVMMAAVENAIATNEVNAAMGVICATPTAGSSGTLPGALFMLEQRLGLSEDQMIRFLFTAGGLGL
IIANHAGIAGATGGCQEEVGSASAMAAAAAVEAAGGSPEQSSQALAIALSNLLGLVCDPIAGLVEIPCVKRNAIGAGNAL
IAADMALAGCTSMIPADECISALDKVGRSMSVDLRETGLGGLAGTPTGQAIKTKIFGKEI
>SEQF1778_EEI65978.1 peroxiredoxin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFVGHEIEDFKVNAYHDGETTEVSKKDVLGKWSIFFFYPADFSFVCPTELEALQDKHEDFKKANAEIYSVSEDTEFVHK
AWAQASDKIGKIKYPMLADPAGKLARMFDVLDEDAGQAYRGVFIVDPDGIIQSYTINNMGIGRSADEILRTLQAAQFVRE
HGDRVCPANWKPGQDSIKPSLDLVGKL
>SEQF1778_EEI65979.1 putative thioredoxin-disulfide reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEQHLYDLIIVGAGPAGLSAGLYAGRATLDTLILEGDTVGGQVTTTSVVYNYPAVEKVDGTQLMNQMQSQVASFGVEIQ
HDAVEKFDLTGEVKTLIGKSGQKYTARSVIIATGANPKKVGFPGENEFRGRGIAYCSTCDGELFTGLQVFVVGGGYAAAE
EADYLSRFAKHVTVLVRGDHFACPVLTAKRALDNPKVSVEYNTEVKEVSGDDYLTTATLVNNKTGEETVYHVDDGDQTFG
MFIYIGTQPATKALANILDLDDRGYIMTDENGKTNIDGVYAAGDVIHKNLRQIVTAASDGAVASTAAERYIILQKEKQGI
PIHAETNKKPAKTVGQTSELSQQENTTPHEGNWLPAEIDQQLQPIFARLTKDIKLQVLTNGTELSNQLVSFVEEFASLDK
HLQMETKPAPADVKYLPQLRLLDADGNDTGLHYAGIPTGHELNSLVLGVYNVAGPGQTIAPEMVERIKKLAPTKIRIGVS
LTCHFCPDVVAACQRMASLNMGITATMIDLQHFPELRKEKKIMSVPATMIDDDPVIFGSQSLKELVTAVEKHHQN
>SEQF1778_EEI65980.1 peptidase, C69 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGNKLTACTSILIGKDASIDGTIMIGRNEDAKAAWPKHMVVHQRGEMPSHFISKDTHLELDLPEESARYTATPEWTDKDG
LFEEDGINEYDVAMSATESAYSNPLVLGYDPLVENGLNEEAMITVVLPYVKTAREGVQRLGNLIAKYGTGETNGVLFADN
DEAWYFETGAGHYWVAQRIPDDSYAVVANQLAIQEIDFNDTNNFMFHPGIQEFVEKHDLNPDPATFNFRKIFGTADRSDA
IYSEPRVWAGHQMFSPRQATDETPESTELPFIMKPDHKLSIFDAQNYLSNHYEGTEFDPLGHGEHAHKYRPISLAKTQES
HILQMNRPGANIHWLAMGVAAESTYVPFFNGITDTPAPYKRGKLPAQLNSAYWIFKHASVLVDSHLHDFLPLLRDVQKER
NAAAIKMIAETDRRLPSLKGEARATFLTWQSDGYATDTLNAYKKLSLELITKMTDYCELNFNTDENL
>SEQF1778_EEI65981.1 TrkA C-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLYKIGREKENMQQLSLLIVMLAALIIPIIMARFKVSSIPTAIAEILTGIILGKSFLNIVNPNWTLNMMSSMGVIMLMFL
SGMEINFDLFRKTPGKKRDSKSPVIMASQAFGLIVISSFVIALIISSLHLFSDILLATIIFSTVALGVVIATLKEKDILQ
KPVGQTLLLTAVLGEVVPMLALTFYASINGGNAKRLGLIVFLFLAAFFLLRRFKQPFIWFNKISKSTTQLDIRLAFFLIF
ALVTIAETVGAENILGAFLAGMVMKLLEPSEATEDRLNSIGYGFLIPFFFIMTGDRLDLKNLFANHQALALIPILVIGFL
LTKLPTMFIYRRRFKPRNSFAGSFLVATTITLVLPTLQVARNLHAITGAQSDAFTLAAVIICIIAPIVFNSMYKLEKSDL
IKQKVNFIGTNTLTVPISQQLYKNWYDVRMVTDNENNFKTYNSQVKHLEYLPTLDAEALEQGGYFDCDIVVVGFLNDHKS
ARLAQIAKEHGVKRVIASQNNPRLDPKDVSALREKGIEIFNSFNVQSSVLRALIESPLILRMLTDTEGLYEATVLNSRYT
GRELHTLPFVNDITISRIFRKRKPIDPHGDTIIEYGDHILFTGDRKAAERVREALRGVN
>SEQF1778_EEI65982.1 4-oxalocrotonate tautomerase family enzyme [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPLVHIDLIEGRTDEQLKALVKDVTAAISKDANVPAERVHIVLNEMRKDRYSVAGKMVSDK
>SEQF1778_EEI65983.1 glycerol kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIDQGTTSSRAIIFDHDGNKVAISQQEFPQYFPQPGWVEHDPLEIWDSVQSVISNVMIKSQIKPYKIAAIGITNQRETT
VIWDRHTGKPIYNAIVWQSKQTSDIAEQLIKDGYKDMIHKKTGLVIDSYFAATKIKWILDHVPGAREKAAKGDLMFGTID
TWLLWKLSGRRVHATDVTNASRTMLFNIHTLEWDQDILDLLEIPQSLLPEVKPSSAIYGYTGDYHFYGVQIPIAGIAGDQ
QAALFGQAAYDKGSIKNTYGTGAFIVMNTGLKPTLSDNGLLTTIAYGLDGQTHYALEGSIFVAGSAVQWLRDGLKMFKKA
SESEQMAVDAKTTGGVYVVPAFTGLGAPYWDQEVRGAMFGLTRGTERGHIIRATLEAIAYQTKDVVDTMVKDTQLPLTAL
TVNGGASRNNFMMQFQADILQTPIKRAAMEEATALGAAFLAGLAVDFWEDQDELRKLSRIGDQFDPQMDPQKAADLYRGW
QRAIAAAQFYGKD
>SEQF1778_EEI65984.1 hypothetical protein HMPREF0534_0699 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MREMKMKTPVQMTDDLAHFIKETREDVAFPHESLYVDLLEQWKVLSRYQLEYADKESKRLYNAYWNSMSHWYKIFNKERE
HLLEPTALPSEELMDFYAGLIEDLMDHVLSLVPPSPHSTIIKLTDFRVLLSNELQKITQLDLEIQGPIDFAMIMDYWKML
GESFDREKIK
>SEQF1778_EEI65985.1 hypothetical protein HMPREF0534_0700 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKHEIDHQAKWLHIKYDGEDRDDECVNELSIYQNADEPELQMLVSNIDFDNISHDNTFTLTKEDAKVLIEYLKDWIN
>SEQF1778_EEI65986.1 hypothetical protein HMPREF0534_0701 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIAKLNHHLSDRQIADEYSVSRAAVSQWRRGVITRAHQLRAKMKGEF
>SEQF1778_EEI65987.1 hypothetical protein HMPREF0534_0690 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEKVVFDQLSKDVADQVRVRQTYKYFNGTDRSKGLYDEAIRMGEDVLQEHKEGYNEPQAMVDLVDQAIYNSRKALNGQQ
TDKHSLKMQLSRAGQFLRSQEFAGLPIKTQQYWEREITAAHNIEVASNTDQALANKTAIKVATMFDTMEQMRHN
>SEQF1778_EEI65988.1 hypothetical protein HMPREF0534_0685, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEFTKRTTSPFRFDIVGSFLRPKELKEARAKYQAGQITKAELTAIEDKTIIDLIKKEEAAGLHAVTDSEFRRSWWHLDF
IWGLEGIEQSISNAGYEFHDETTRAETAKLVGKVSGNNHPFVEHFKFTCDHVSTGTQIKQTIPSPAQAFFEFLRPENIAS
V
>SEQF1778_EEI65989.1 ubiquinone/menaquinone biosynthesis methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVQTNKLLNEHEVNNLFSRVAPRYDLLNNVISLGTQKIWRHELFNQLQIKPTDNALDVCCGTGDLTIALAKRISAGRVTG
LDFNKEMLEIAKEKTKMIGNLFLVQGDAMALPFDDNSFDIVTIGFGLRNVPDADKALSEIYRVLKPGGQFVSLEMSQPTN
PIIKVGWKAYFTAFPLMASLAGGHYRDYQYLKKTSQQFVSAHQLARMMKAVGFKEVHYQPLNFGAAALHFGDK
>SEQF1778_EEI65990.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIKMDSEVARGKFPHGWHRTFYTLWLGAFITGMGYSMTMPFISLFIAELGNFTRFQLNIYSGLAFGVTFISQAIVSPFW
GSLADRKGRKLMCMRASGVMACTICAIGFAQSVWMIIGMRFLQGVFSGYINNATALMAGETPHNKSGWVMSAMTTAGVAG
NLVGPLLGGFLSELFGYRIPFFITGALMFCVFLSTWLLTVEHFTPIKKEAMKPMKEIIHNLDNPPLIFVMFLTTMIVTSS
TMSIDPIISLYVRQLMGGHGNIAFVAGIVAATPGLGTLLAASKVGHTMDRIGPEKVLHIGILTAFILFIPMSITKSPWAL
AFWRFLLGLANAALMPATQTVLTLDVPTEAFGRIFSYNQSFQAAGAVLGSILGSFISGISSYEMVFVITGLTLLLNFILV
MLVRPKKQLTE
>SEQF1778_EEI65991.1 Ser/Thr phosphatase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVRKGKSSVKKRIAVFSDTHGNLTALQAMYRDSIAQHVDEYWFIGDLLMPGPSVKPIWEILQEMKPTVIVRGNWDDLVV
RGARGMMDMERPSHIYFARLAQYVAEHAPDGMIDEIASWPMHVTKRVGLLNFGISHNLPWLNMGQDLFPTQVSENFDKLF
NVAGEPVDIAIYAHVHHDLLRYGSDERMVLNPGAVGEPFNHWQPLQRDLRAHYLILEVDDIGLAETSFRHIGYSRDQEKQ
IADKSDLPYRDLYKKMMVTGRAYTHDDELLTEYNNQYNYADEYRKYAKKLNG
>SEQF1778_EEI65992.1 ribosomal protein S14p/S29e [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKSKIAKLHHQEALVKKYAEKRKELKAKGDYIGLSKLPRNSSAVRLHNRDRYDGRPHAYMRKFGMSRIKFRELAHKGQ
IPGVRKASW
>SEQF1778_EEI65993.1 hypothetical protein HMPREF0534_0675 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDLTNYRIDPAKFALACVQSSPDLTTEDKLRVYKEVYEEALTFYHQIQTAVINKGRSKEDRSLKEMGDFFDLKN
>SEQF1778_EEI65994.1 hypothetical protein HMPREF0534_0676 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNYEELFQKIDKWAHERGIDHADPRVEFMKMAEELGELSSAYNKENRTKLIDSIGDLQIALLIFCKLVGVDHQQALTAAY
QEIAKRTGKTTADGVFIKESDLKSRNKKEK
>SEQF1778_EEI65995.1 exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFISWNIDSINAALTGTSVRAGETREVLKKIAAMKPDVIAIQETKLSKNGPTKKHLTVLQELFPNYEVAWRSSVEPARK
GYAGTMYLYLAQYEPKVTYPKINAPEPMDDEGRIITLEFPDFYVTEVYTPNSGNGLKRLDERQTWDDCYRDYLHELDQQK
PVIASGDFNVAHEEIDLAHPATNHHSAGFTDEERTHFSKLLAAGFTDSFRHLHPDEKGVYSWWAQRVITSKQNNSGWRID
YWLVSDRLADKITEAGMIDSGERRDHTPIILEIDL
>SEQF1778_EEI65996.1 hypothetical protein HMPREF0534_0678 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIQDLQNGVYGTLADNDLKKLSEKDIQKGCPTTVYLNGKVIGHTAKNDNHHIIWDK
>SEQF1778_EEI65997.1 hypothetical protein HMPREF0534_0679 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIQSTNFILNYFPLFISLKMIIIKRTRFIDEEIYIMNKVSKGLVLALATVGTSTGLSTTLFQSTSVAYAAEMTKEKMI
>SEQF1778_EEI65998.1 transcriptional regulator, LacI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMATIKEIAEKSGYSPATVSRLLNNDQNLSISPSTRNKIMTVANELGYWNNHKKNSQQQPIRPNLALLYRVSGKEQLQDE
YFAFLRNAIIKEVDEAGAQVEIFSNIKDLIAAADSFQGFIGVGADRVTQDQLIELHQYLPHGVFVDINPMPQLFDSVQPN
LELTIQDALHRLAEAGYERIGFIGGKGLNLNNIQQADAREIAFREFTGMQGIKEAPLYVDGPFNVKNGYQLGKRVLEQSG
GKLPEAFIIASDTLSVGVLQAFNEAGVIVPRDTVVISINNSEVAKYVSPPLTSYNINQETLSRMAINLLQDLITHPHRPH
VHLTVNTNIVFRKSFPKENK
>SEQF1778_EEI65999.1 glycoside/pentoside/hexuronide transporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTHSHKLTGKQLISRASFCFGNLGHSAFYGVMSTYFIIFVTSGMFAGLSKTVANKLIGLITGLIVSVRILELLIDPLLGN
IVDNTKTQWGKFKPWILMGNIVSAILLLILFTGIFGLAKYNWVLFAILFVIIFITFDIFYSFSDVSYWGMVPALSEDSEE
RGVYTALGAFAGTLGWNGLTIIVVPIVTTFTYLATGHHRQGPAGWFAFAAIISALAVICALVVCVGTKENYNVIRKSAQD
KTTIREVFSAIFHNDQILWPSLAYLLYSCAYVVTNGVLFYLYKFVIGKPGEFWIVGVIATIIGFCTSPLYPILNKFIPRK
WLFIGGQVCMSLAYLIFIFARSNVLMMDFGLVLFNINFAQLVTVLTLTDAIEYGQLNSGQRNEAVVLAVRPMIDKLTGAI
SNGLVGYIAIAAGMTGSATAADMTGHDIRTFDSMAFYIPLVLAILSIFVFLFKVKLSEEVHAEVVEELKDKLAQGELTSE
ASTSSTGLKEETIYAPTDGELVAMKEVVDRDGQPFPGKGFVIRPTSDKLYAPFDGKINFTFGTRHAFGITSDRGLEMIVH
IGVGTVNMRGEGFNAHYNDGQIVKKGQLLFDFDRELIRQRGYEDWVITFFAQPHNIEATAGFTPGKLIKHGDKVVTVEFK
>SEQF1778_EEI66000.1 beta-galactosidase trimerization domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMKKELPRFLYGGDYNPEQWPEETWAEDIKVFKRADINTATINVFSWALLEPQEGKYDFTKLDKIIKELTAADFDIVLAT
STAAMPAWMFKKYPDVARVDYQGRRHVFGARHNFCPSSKNYRRLAKNLVEQLAKRYGDNPHIVAWHVNNEYGGNCYCEEC
QTEFQQWLKARYQTLNNLNHAWNMNVWSHTIYDWNEIVVPNELGDAWGSEGSETIVAGLSIDYLRFQSTQMLDLFKMEKQ
IIEKYDPTTLVTTNFHSLPNKMIDYQQWASAQDIISYDSYPAYDAPVYQPAFLYDLMRSLKHQPFMLMESTPSQVNWQPY
SPLKRPGQMAATELQAVAHGADTVQFFQLKQALGGSEKFHGAVISHANRTDTRAFKEVAKLGHDLRKVGPVIKDSQTKAR
VALIFDWSNFWSFEYVDGITQALKYVPIILDYYRQFYELNIPIDVISVDDDFSQYDLVVAPVLYMVKDGLGKKITDYVAN
GGNFITSFMSGMVNESDNIYPGGYPGPLKDVMGLWVEESDAILPDKDVKLAMTTGNELTGHLIADLICLNGAHVLAKYAS
EFYAGTPAVTENTYSKGKAWYVGSRLDHASLRKIIMHIVDDVHLSALVKEQTELEITKRQNSAGQDIYFVLNMGKGKQPL
PVEFQKGYRDLLTGDFPETMLDSWDVEILVQE
>SEQF1778_EEI66001.1 polyprenyl synthetase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKQHFFHTYPAINNALGKVNQTINDRITIKNTQLHDALQQMASNGGKYLRPAFFLLFANINHQTADEQERLIKIASSLEV
LHMATLIHDDIIDDSPKRRGAVSVQSAFGKDTAVYTGDFLFTIFFDLLVETMTGSPYLTRNARTMRKILTGELGQMDNRF
DLDQSLLDYYRNVNGKTAAIFSLAAEEGAYFGHSDRRTINLAKRIGQNIGISFQILDDILDYSGDERLNKPVLEDLATGV
YSLPLLLTLQNHRHELEPLLAKKRQMTIEDMEKVQKIVVTHGGVKKAQEIATKFTQKAQTEIDQLADKHTRKMLKLVAKK
LLTRVN
>SEQF1778_EEI66002.1 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLNVFLELVEIKAKTASILPMLLGVCLSVYYYHSLNLLNSVLFFIAMLLFNMAVDMMDNYNDYNHAIDTVDYKKNTNII
GRENISPRLVLGLLLAFSIVAGLIGIYLVTRVGLPLLWMGIFCFAIGILYSSGPFPLSGLPVGEFASGFTMGFMITLISV
FINVGQQFTWSWANIGVVFLVALPDELWISNLLLANNICDAGEDEDNRRHTVIHFIGQKNGLYAFAIKNVLAFLAIIFAA
VLHFVPWTVLLTLLIIPFVVKQTRMLFAKQVKKETFPCAVKILLIGSLVQVVTFAIGLI
>SEQF1778_EEI66003.1 hypothetical protein HMPREF0534_0667, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSITFENSFQGSFRDMGESHISIHSGQHDNMVDGEDPIIELRGNSVSDSSWALMIAKATSQGVVSPKDWPEYNRKIPDK
KRRKKDYNDYLLTLCSKPIKRLKATQTAKNTPKAQRTKISQELASVDRDHVLNDGSLWYVAKVDDRPDNVGKKEWREFEV
EALTRFDKDPTYRMLNPGTYRSEIHLDERGEIHKQDLAVWFRPDSRGRVQYSKTSTIQDVLLKLYGGNKDELDRRVSLVS
EITNNIDKTPGQERADTKLWRSVKSNQQPTRMLHAGKRYNSAMITLWRYENVRILRDTALQVAKERGIDYQVSDRYETDG
VHRSRDIYMQHQQAKDSLHGEQL
>SEQF1778_EEI66004.1 hypothetical protein HMPREF0534_0668 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIFKKKCVLLEAAGRPLGERKLCKFYLHNIIAWYNRYVKSETFHENSLSFSIDDTLKCADFTGFFNFDGFTIEPRFDFI
LSLD
>SEQF1778_EEI66005.1 hypothetical protein HMPREF0534_0669 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQVQIVTKIGPVYFPLTENKTASNGSTFRQKLTSKVGHFSVKK
>SEQF1778_EEI66006.1 hypothetical protein HMPREF0534_0670 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIKIKDSSKTLSGKFDTYIKSQYKFLSLVHAGAINGLLTVTKPKDNKHKHNFKHQPILSDNGDLGYEQYYHLDMTDNVV
IPHVTMVYSNGANTAGRVVYIDNTRIAHSPLRELNEASKRTQTMVKVLDTAKQLQQIRSGSSEFCSYMTTLTIPNCNKDE
LDQVVGSMSTRITAVIKALQDGYRNGNGLRLVDHNGRPVQILGAIVKIEITINQVKLKTCDSQGIFHPHIHIVLITANEL
ALGPSRRILFHYWSNKNSDMILSRKAFNFKKAYSKNQMDSDDSTSIVAEATKYATKPTMYKLLPTIKDSNNLTSDDQFKL
EIFCEVFKTIKGRQLSRSYGLIRDATGFVNFLKNGIMVKYRGNNPMHGKHERISIFDAFMFGNYNDNKQIHVPDIMTTRN
ELIPGGNFNQVDLSDDELLYANKGLLSGATWELPDNIKWPSNNQKADEYKELLTRFGFVQPGLGNIIDQLQSWIQTIDQR
KDKVLHTVLDASERSFQYNDLLHKGEDVRRLVRILEDVCDQYGDDTTTLTTHDYSQIYRDVDLMQVMDAHHATLHYDSYG
KPDDVTFDEPDVERRLVASYKKHDDVRFMSATAFLPREILIEYGVWLKHTPSEFIDNLASYTSHAPELEIDTVSKMDAKT
TQKWINKAFNVSSSNGPQIDFHTMFTSAKMSQVQADNNDDLDHLFDDGVGDDDDDDNTEINSLSDVFPDLKW
>SEQF1778_EEI66007.1 hypothetical protein HMPREF0534_0671 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDRHVWQRLATVVLAALVIFSINTFSPVGNGDGLGITTIQAKKKTHQLPNLLDQQIAILVGLDINPNWVREQSAADSLIY
GIVKPDDTVPAGINEDYSYLVTSNRDKEISLFFKADKKKVTIKYANHGEKLHTKTVPLSRLVEQSYRTKKQRQQVNKYAS
ALRTE
>SEQF1778_EEI66008.1 hypothetical protein HMPREF0534_0672 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFDGPWDDDERYILDDRQLYFLKQAGERLSSQDFQDLKQENDDELGFYSCTVDGELDRKKLPSSFLEVKVRVGRKLRSQ
IKQMVDDPDKLPEFGFRDYRGMTVTDCEYLSLLELPDEWLSNYLRYFMNYSGIHSDDVYVAASGRFKLVEIDNWKNVVPD
YSDFSTVDLLQCDMNFLKAYIASIE
>SEQF1778_EEI66009.1 hypothetical protein HMPREF0534_0673 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNTKNQVKTKTKTYTTSELASLCGVTVGSISVLIKKQNLKPVKTGQNNAKYYDAGVLKQLRLHYAKSKPKRDKTNNTQDL
RTQLAVAQSENQLLRDQLESAKSTIEILRNELKIKNSQIDKLQDLTNQAQQLDLATHTQHQELLEQKSQPTDEPTKHKHG
IFNWF
>SEQF1778_EEI66010.1 hypothetical protein HMPREF0534_0674, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KKRAQYATGKLIDAINDIYRDTLKRDPGASESPLEQTNKIINHLNEIKEESKRIQRENDRQQQQLDQLKRQNELMKRQQF
RWFELRLLIVNIIEKLWHLMFDRDLQHDFTNDHQKWRDSMTNQVNKEMYNQLDQDQQKQLNAPNQSNGHNLER
>SEQF1778_EEI66011.1 hypothetical protein HMPREF0534_0666, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
RKYAHLTKEERVMIATLKSQGLSNRAIGRQLGVNHQTINNELKRGTVRQIRRQKFNGKTYDYPYHIYSYEAGQNIYLKCH
QRSGRPRLYYRSKRFLQLADQLMLGEFDEHRYSPQAAIYKARDLMSDDSLIPKSVVTLYQWINDGVLRTSNLDLF
>SEQF1778_EEI66012.1 hypothetical protein HMPREF0534_0665, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
RLNDYQQAEELFMKALGIFEAKGDKDAMNLLNYGLGNLYYEIGKVNEAIKLYNKIDDPKLKADSYLMLAQSYM
>SEQF1778_EEI66013.1 C4-dicarboxylate anaerobic carrier, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQETQTKKKHHFHMPSAFTILFLIIILIAILTWIIPAGTYETDKAGNIISGTYKAVTNKPQGIWDVFMAPVIGMVGDKKT
DGAISVSLFILVIGGFLGVVNKTNALNEGIGSIVRRYKGREKQLIPILMLLFALGGSTYGMGEETIAFYPLLIPVMMGVG
FDSIVAVAIALVGSQVGCLASTVNPFATGVASQTLNISPGDGLVSRVILLIIMITISIIYVYHYASVIEKDPTKSLVYNQ
RAEDEKHFW
>SEQF1778_EEI66014.1 Dyp-type peroxidase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLMVMNPSKAQDVWKDAGEHVQFTVLELKRENQAKEQEAIQEFVERFQAITRSLRIRDNKGNLKVSLGFSNDAWDYLFP
NAPKPKELETYQTLTGPKYKMPAAKGDIFLHIRANDEAAVYEFMAQVMLFIRDITNVVDETKGFRYFEGRAIIGFIDGTE
NPEPQDAAEYAIIGDEDPTFENGSYAFAQKWRHNMDIWNKLTTETQEKAVGRKKFSDLELSEKEKFKNAHNVASQAEIDG
IEQKIVRMNVPYSDPAADNTGTFFIGYSRHWTVTKKMLENMLEQNDYLLTFSDILGGQLFFIPSRPMLDQIAEGELN
>SEQF1778_EEI66015.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEPITINNLTFAYPGQEPLFNHCDLNISSDWKLGLLGRNGRGKTTLLKILQKQLSFQGSIQTNLKFNYYPLVIREPNDYT
LNVLMRSGYQGEQWQIERELNLMATPTELLWQPFSTLSGGEQTHVMLATLFAQDGYFPLLDEPTNHLDQDGRKQIAQYLK
AKKRLHYY
>SEQF1778_EEI66016.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMKKATIMKGRLDTAIEERKGLLKEIENVVPLTINVLPTNHQLLLSINDLTLSYPTKQLCSNITTTIEKNDQVLLCGNNG
TGKSSIINAIIGTFSGKQSGDILFSSALKISTVRQDYYDNHGSLRSFASSSKINYDQFLNLLRKLGMERATFNVPIEEMS
MGQQKKVELARSLAEPAHLYLWDEPLNYLDTYNQQQLIQLIQEKRPPMLIVEHDQNFIKQIATKKIEI
>SEQF1778_EEI66017.1 hypothetical protein HMPREF0534_0655 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEIKSVNLDQPYSSLDIYHNNTDKALPGLVILPGGSYNKIMERDSERVALTFATHAWQTFVVRYPVVEHKNYEEAKIAVH
QAFEYIVNHANELDVDVDRLGIIGFSAGGQIAAAYSNEKLTHAKFAALGYPVIQPLIDERMGVTTENVAELVNPQTPPTF
MWGSAKDELTPFVDHLQVYADALIKYDVPYELHEFGTGGHGIALANEYTGIVNNDRVDNHMGKWFPLFLEWLTELNLI
>SEQF1778_EEI66018.1 hypothetical protein HMPREF0534_0656 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTKSFWIAAIMTLICSVAGVLLAKLPYVNLIGALVIALLLGIAMQLTPASLRNEAQGGIGFISNKFLRLGIILLGFRLN
LERLAAAGVKTILVAAIGVTGTIVLTYWLSRKFGAEDELAILSACGCGICGAAAVMGVSPQIETDNEERKRENEVLAVAV
VCVMGTVFTLVEIGIKPLLGLTDPQFGIVAGGSLHEIAHAVAAGGAFGEASLDNALIMKLSRVLLLAPVALIVGYWYQHR
LIVESEEEHTKEPKKLPIPWFLGGFILTSVLGTFLPFSPAFLDALVQAAYIFLGMAMAALGVSVNFKVIFKRGGAVFGAA
VISSTCLLVFMIIMSKIFF
>SEQF1778_EEI66019.1 flavin reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMKIVVLTGSPHHPGTSEQLADAFVKGATEAGNEVYRFDAGRRTDEFSMIKLEDNHPGQEVAIEPNDVITNEVMPKLLAA
DMIVLVSSLYYYGINAALKAVIDRFYSYNHELHGGKKAITLVSGYGQADAFASLNLYFKQLLEYMRWDKVGEVLAADSWN
SQNWLNTLKKLTS
>SEQF1778_EEI66020.1 pyridoxal-phosphate dependent protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLVENTYDLIGHTPLMHLPMKTPNDVNIYAKLEMFNPGGSIKDRLGMALIQRGMEEGKIKDTTTIIEPTAGNTGIGVALA
ALKYHLPVKLVVPEKFSFEKQTLMRALGAEVINTPSEEGIKGAIAAAKELAAEIGDAYVPLQFQNPANPDVYQRTLGPEI
LADLANKPLAAFVAGAGSGGTFAGIQKALQDAYPELKGYIVEPAGSILNGGPAHSHRTEGIGVEFIPPFFKDLDYTGVKT
ISDEDAFYYVRWVAKNLGLFIGSSSGAALAASLEVAKELPHGANLVTVFPDSSERYLSEHIYEE
>SEQF1778_EEI66021.1 ferrochelatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKNGLLLVNLGSPDTPTTPDVKRYLKEFLSDRNVIEMPPALWQPLLRGIILPTRSWRSATFYRNCWTKDGSPLIVYTER
LVAKVQKLMPEWIVKMAMTYGKPKISDTVVEMKKECQNITVLPLFPFFTKSTTQTIIEKVKDADPEAKIIDRFSAEEDYL
DLLAKQIQTAWDKGKYDKLLISYHGIPTAMVNHGDPYRDETEAATAELIKRLDIPEKQIKMAYQSKFGPMPWLKPYLRNT
LLNEAQLGHRDVLVVAPSFVADCLETLEEDQVQNYQVFRENGGNNLVMVPSLNDSPEFAQFITDLVQRKG
>SEQF1778_EEI66022.1 metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MERKSLDEINGSVDVPNVYQSAFWQKFLAYSGPGALVAVGYMDPGNWLTSLAGGSQYRYQLLVVLFTAILIAMYMQSLAI
KLGVTTRTDLAQAIAWRLPTPLRIALWLFNEIAMMATDLTGVVGTAVALNMLFKLPLLIGVLLTIADVLVVLFFLHFGIR
RIEFIVLTAILVVGAIFAIEVCRAHPEFSAIMDGFVPRSTIFTNHSELLISLGIVGATIMPHNIYLHSSLAQSRRYDEHD
PKQVKETLRFANWDSLIHLFAAFVVNALLLILGGTLFFHAASLGSLEDVFFGLKNPQIVGSLASPLMSWLFAFALLVTGL
ISSITSTLAGQIVMEGFINIRLPLWKRRLLTRAVTLVPILIIGFMINFNEEQFEQLIIYAQIVLSIALPFTLYPLVALTG
NKKLMGPHVNSPWQTVLGYVLASLVTGLNLLVLV
>SEQF1778_EEI66023.1 methyltransferase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIGIVIVIVVGIIGWLIWQRQQVWKKISADLSIRGDVQILDMSIGNGKTFTNLAKQLTAPGKIMGIVKNEKQAQQVKELI
KEEAVADRAKVELTDNTNLPFTDHQFDYVLISNLQQVKPAITQGRVLQEAIRVLAFKGTIVITATTVQRYRQLLEYYRFK
DIKVKQIGGQRVMIARRN
>SEQF1778_EEI66024.1 TrkA N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKESYAVIGIGQFGASICEALVQAGQEVLAIDSSEEVVNEFAGSVMRAVIADAQDEDALCDLDIGSFDHVYISIGKNV
EASIMATLIAKELGAPDVICRAENVNHARVLERIGADMVVRPEHDLAKRLIFQQLNPSVVDYVTLSKEITLAEVNINNPK
FFNKTLDELNFRNRYNVNVIIIVSKDDEVNQMPQANDVIQPHDKITVVGQLKDIRKLNDIVS
>SEQF1778_EEI66025.1 potassium uptake protein, TrkH family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEINKHKYTFPKILTFGFLIVIFMGTILLSLPFATRPGETTNFMTAFFTSTSATCVTGLTLVSTAHHWTLFGQIVIAIL
MEVGGLGFMTFAVMMSLLVRQRMRMSTRLLTQEALNLDHLSQLNVVYLIIRLSLLIQLAGGIFLFFDFYPRYGLGKGIWF
SIFHSISAFCNAGFDLFDNSMANYANDPYMLCVLAVLIIAGSLGFLVWKDILNYPKYHRLSLHTQLALRTGAVLFIVSVV
IYFITEKNLAQLSDKLSFSNRILNTIFMAITPRTAGLITFPYTDLSAAGLAFTVILMFIGGTPGSTAGGVKTTTIGLLTI
QSFATLRGQRDTTFAHRRFTQENIYRALTLLFVALFILLVSILVLVETQDLPKHDSLAYVTFEAVAAFGTTGISLGITTH
LNLLGQFIMMFLMFVGRVGIYTVMFSILNASTAAKNYRYPEESVLIG
>SEQF1778_EEI66026.1 hypothetical protein HMPREF0534_0664 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYYSNGNYEAFARPRKPAGVDKKHAYIVGAGLAGLSAAVFLIRDAQMPGENIHIFEELPIAGGSLDGQDRPDVGFVTRGG
REMENHFECMWDMYRSIPSLEIPGASYLDEYYWLDKDDPNSSNCRLTYKRGNEVPTDGKYLLGKSTKELMKLILTPEDQL
GDLTIGDYFSEDFFKSNFWIYWSTMFAFEKWHSLAEMRRYAMRFIHHIDGLPDFTALKFNKYNQYESMTKPLLAYLKDHG
VKFEYDTQVQNVLVDTKNGEKHAKKIILKQGGEDKTINLTDDDLVFVTNGSITESSNYGSHHQVAQPTRALGGSWKLWEN
LAKQSPSFGHPDVFCKNIPNRSWFISATATVKNPQIEPYIERLTKRDLHDGKVNTGGIITVTDSNWMMSWTIHRQPHFKS
QKPNETIVWIYGLYSDTEGNYIKKRIVDCTGEEITKEWLYHLGVPEALIDDLAKEESVNTVPVYMPFVTSYFMPRVKGDR
PNVVPEGSANLAFIGNFAESPTRDTVFTTEYSVRTAMEAVYSLLNVDRGVPEVFNSVYDIRELIRAMYYMNDKKPLEEMD
LPIPKIVEKPLLKKIKKNWIGELMEEQHLL
>SEQF1778_EEI66027.1 transposase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
ASVQRVLLDLADQYKPNLNYLPETLCIDEFKSMRSAKGKMSFIAVDGDQSCLFELLEDRRLCSLFKHYQQFTRQARCRVK
YLVMDMNAAYDQLVKTVFPCAQIIYDRFHIAKHLNDTMNHVRIHVFNRLRKGDSAEQKQARRLKRYWRLFLQDRENLSTK
VYYEGRYFNRVVNSIMILDLMLGYDQELRATYNFIQSLKCAYNQRDFTTFFQLLKLRPDSVSHYTIHRCQVLARYKEGIK
RGFETKFSNGRTEGINNRIKTIKRVACGYRYFTAFKTRIYLIIGHQIQTN
>SEQF1778_EEI66028.1 sucrose phosphorylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPIKNEAMLITYSDSMGKNIKETHEVLKNYIGDAIGGVHLLPFFPSTGDRGFAPYRYDVVDSAFGNWDDVEALGEDYYLM
FDFMINHISKKSEMYQDFKKKHDDSKYNDFFIRWEKFWEKAGKNRPTQEDVDLIYKRKDKAPKQEITFDDGTTENLWNTF
GEEQIDINVKSKVANEFFKETLIDMVKHGADMIRLDAFAYAIKKVGTNDFFVEPEIWDLLNEVQDILAPYKAIILPEIHE
HYTIPQKISQHDFFIYDFTLPMTTLYTLYSGKTNRLAKWLKMSPMKQFTTLDTHDGIGVVDAKDILTDDEIEYASNELYK
VGANVKRKYSSAEYNNLDIYQINSTYYSALGDDDKAYLLSRAFQVFAPGIPMVYYVGLLAGSNDLELLEKTKEGRNINRH
YYTKEEVAQEVQRPVVKNLLDLLAWRNKFAAFDLDGSIEVETPTETTIKVTRKDKDGKNVAVLDADAANKTFTITANGEK
VMEQK
>SEQF1778_EEI66029.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNKNSLVTKLAFLSVSFMVTSAYAIQGSLPQLKAALGISQTQSEYLVTTPSFAVMIFVVLSPLLQQWFNISDKKIIMAG
VTIVGLAGIVPMFANDYTAILISRLVLGAGFGLYNSQAISMISVWYEGTTRAQMLGWRAAAEQIGQACTLAIAGLILSYA
GWHASFAVYLLAFVVLFFFAVRVPDDSKAQDNNVAEDDLAEELTEVEEPIKKISPVVYLLVLFAFLLVVDYVGMENRFPG
LTVAIKGSSYTGSSMFLSLMLIGATLGGLFYGSINKVLGFNTVYLGLGLMAISNFLFAFANGNFAMLVIGLLLIGFPLQL
VSPLIFNLLPDLAPAKRQPLVTSMVLIGFNFGAFFSPTIAEWMNRLVGRPMSGLDLAAPFPIYGVMLIVIALIIFFATRH
SKQAN
>SEQF1778_EEI66030.1 putative dipeptidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKIITEDEQKAAVKTLERLISVPSYNQPVEEGAPFGKGIRNALDEMMKICDELGFKTYEDPDGYYSYAEVGSGDKIFGV
ICHLDTVPAGDLGKWKHNPFKGTVINDAVYGRGSQDDKGPGIAALYAVKALMDQGYHFNQRIRFIYGTDEEILWRGIAEY
NKKEAPIDSGISPDAEFPLIYAEKGLQQSYLVGPGTDQLKINLKNAFNAVPDSAVYDGPKQDEVKAALDKHGFEYTSDDN
SITVIGKSVHAMMAPEGTNAVLRLAIALDDVFDFKPLDFIGKLFKEDATGSNVLGDVRDESGQLTFNISSLEINENETRM
QIDLRIPVTIDRDNLLAKLSKQVAAYDLKYVHFDYLAPLYVPKDSKLVQTLMKVYKEQTGDVDAEPQISGGATFARTMNN
CVAFGGMLPTTPDYMHQANEQWPLPDMYKAMEIYAQAIKKLCVD
>SEQF1778_EEI66031.1 C4-dicarboxylate anaerobic carrier [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILGLIPWSNLNSHWTFFDKFTKWLVNIPFLGDLLGHDMAPFGTWYFNEITMLFLFMSVLIMAVYHMKESEFIDAFMSGM
GDFLSVAIIVAVARGIQVIMNNGMITGTVLHWGELGLHGLSQTIFIILTYIFYIPMSFLIPSTSGLAAATMGIIGPMGHF
AHVSGSLVITAYQAASGWVNLITPTSGVVMGALAIAHINVGIWWKWMLKLMIYLFVATCLFLGIAALL
>SEQF1778_EEI66032.1 hypothetical protein HMPREF0534_0649, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
IIMITISIIYVYHYASVIEKDPTKSLVYNQRAEDEKHFLVKADPSDDHKMTGRQKTVIGYSELLLL
>SEQF1778_EEI66033.1 hypothetical protein HMPREF0534_0642 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADYAKRQLKALDRIAKKIADAEGHLTKIEDSVDNEKHRTAQHETIKDIKSILKYAWKVDKDSVKLEERAGEGRKDPAEN
YYVYMEDEEGVIKNLNKEFKELDEKLAALTDDEGGKIKAFRAEHHYLEKAKEILQNAGKYNPDDKD
>SEQF1778_EEI66034.1 serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKVKSFFAKLLLITAIISICLNGLGMFEKVHADTAAFQMDARAAYAIDAESGQVLYQKNATKRYPIASVIKILTLGVIL
QDIRNHHLKWDQKIKITPAVAKMADDWHFSNVPLMNGEEYTVRQLVDSMMLVSADGSTEALALADAGSTAAFNKKMMAFA
KKAGVTDIKIYNMIGLPNGDLGKHKLKGVDKDAENLLSAKDVALISKYLVENYPETLDITKQKFANFDVTKDQQYLMTNV
NALLPQNGFAPKDGEIDGLKTGNTDRAGKCIVSTGTFTGRRIILVALHTKGEWNDQSKMQQDFYNKLVDEYQPVEIKKVS
DLSAKLTSVKVKNGKNKNKANIKLTKKTTVWLPKNMKLQATKPTLRVQGNDQKQLTAPIKENQQVGSIELHIPGLPDFNI
PVSTSQSVAKKSMF
>SEQF1778_EEI66035.1 penicillin-binding protein, transpeptidase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQRSQRHRRKPRRLILIIIAILLIIMGVRHFSSTSARLKSAWNKIIFTSNNNVSIAVYSPKTHQIYTSSNAPQHKFRTAS
TVKVSILAGILAKQQSPLTSHQKSLATKMIEQSDNDSTSELFEDYLGGKNGLQQTFEKFGMTQSQANSSWGLTVTTPKDQ
VKLLNNIFYKSKVLSDDERSEIRDLMGNVESDQAWGISASSDNFALKNGWLNYGKDEWIVNSIGYVKNSNGTDYTIAVYT
DKNQSMAAGQQVIEQLARVTKPILD
>SEQF1778_EEI66036.1 hypothetical protein HMPREF0534_0612 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVLAIIKEEFLMQQLGKRLLNWWSKYSKIIKVVFVTSVLVFVILALGNFFKTVKWHEVGVGLANLSWESIILLLITGCI
AVIPMLGYDFAITHLLPGKFKKSYIIRCGWITNTLTNIAGFGGILGSTLRAYFYRKNATKKEILLAISKIAVFLLSGLSV
LCWVALIIMFVFHDGGHFNQYALWLVGGGLYFPIVFYFTVIHNSKIFKNITPKVGTFLVTSSTCEWLFVALFFLLVGWCL
DVRHSLISVLPLYVVAQVLGVLSMIPGALGSFDLLMMLELSLLGVSQTTSVIWLLLFRIFYYIVPLIIAGFMFLHSLASQ
VNQFFDGLPLLMVRKLAYYLITTFMYVSGILMLITASIPDITAQNKIIANLYPYTFFFLHQLTTILFALAMLACARGLQS
KVKKAYLPTLILLVIGIANTIWNLGTLSLTIYLVIVLILVLLSRHVLYRKKLEYSIGKFAIDSLIFAGACILYVIVGVIN
APQYSSKHHIPDFLFFPGEKIWISGLFGLILGLLLIFVILRYFMAGTDPFNIPNVFDAERIRNVIKEYGGNETSHLAFLK
DKSIYYYSVDDHDKLFFMYRRKYDRLVVMGDPVGDKDSWRPALRQFVLEADKYGYQLVFYEVSSDMTMLLHEFGFDFIKT
GETGLVKLADFTLAGKRQRSQRALMHKFDREGYTFSVEKPPFSKELMQEMKQVSDSWLGNETEKGFSLGFFDSYYINQAP
VGIIRDKDGKMVAFATFMPTGGKKILTIDLMRHSKDAPSGIMDKIFISMFQYGQENGYTYFDLGMAPLSNVGEYQFSFIE
EKAAHFIYEYGYHLYGFQGLRRYKDKYATVWYSRYTAFRKKNSIIATMMILVSVVNQRVDQQNHRSIFWWLIK
>SEQF1778_EEI66037.1 DJ-1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKVAVVFAPGCEEVEGLTIVDVLRRMRIETTMVGLEDLHVPGAHGIELTCDEVMSDRLLNYDVVAFPGGRGGAQKLRDN
DKLMKLMQKRNAENKWDAAMCAAPIALARYGLLDNHNYTCFPGINEEIAKVAPTANFKEDITVVDNDGKIITSRGPATAL
AFAYQIAEVLGYNTDKIKHEMLYDYLMDQK
>SEQF1778_EEI66038.1 hydrolase, alpha/beta domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKIKKFNTQIASHLANNLENSLRELRRCGAHRSSKATFTEMGIQLSGFKNDLAENNKFNALVGNAWIDNEADYYLPTAE
MTVDVQRQEQEVTTYVLNDHGDNQRVIMYLTGGAYIQRPDKTHWQYLNRLAIATDAKIYVPIYSLVPHATFRTAYQEIAS
LYSKIYTLMPASKVTIMGDSAGGGLAAGFCEYLGKKGLPQPGHLILFSPWLDLDLTNPLISKYEDKDVTLAVNGLRKIGT
MWAGDTDHQDYRLSPLYGNLDQLRDVTVFVGTREILYPDVTLFVQKLRNAGITVNSYTGRGLFHIYPLYQIPEAKGVMKR
VVATINN
>SEQF1778_EEI66039.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELQQRRTIVTGALLLSNIMAGMDGTIVNTALPAITSDLHGLQYMGWIIATFLLGMAVATPLWSKFGEHKGNKQAYITAT
SMFLVGAIFQGLAPNILWFIIARTVMGIGAGGMNTIPFIVFAELYDNLKKRAQVLGIASACFGTASIIGPLLGGWIVDAL
SWHWVFYVNVPIALIAITIISLFYKNVKKQAAGKPVDYLGATLLVVSLVMILVAVQLIGSASGLVVGCLFVVGLLLLGGM
IKVDSKAVDPIVPSRLFKNRELVIDFTLFVIIWGSFIAFVTYIPMWAQGILGLSALLGGMTQIPGAVTNFIGSELVPVLQ
ERWGKYWIVTCGAASIFIAYLGIMIGGQKTPFWLILFMGAFEGFGVGLVFNILQINVQTDAELRDVPIATSLGYLLRILS
QTLMSAVYGVILNQELFQGVQTHHGITLRMLNKLSNAQTASSLPDKLLPTLRMILYNGYRDIIIAAVILIVIALILVVVL
GWQNHCHQRELMALGNLKDTKS
>SEQF1778_EEI66040.1 uracil-DNA glycosylase, family 4 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIAEYPPTLLAEVKEKTKDRQLTGFTPGQGPLNPDLMLVGEAPGRYEEKVNIPFSGASGQELMKLIESIGYSRSTVYITS
VVRQRPYSIKKAIDKKTGEVIEKRPNRTPTKKEVLAFAPLFDWELAQVKPKIIVTLGNTALQRLLGSQANIGKLHGQLLH
EKIQRTNDAHDGYELTTDKHWIMPMYHPAAVLYARRLEPTIKADWQRLGQDIKKMKK
>SEQF1778_EEI66041.1 hypothetical protein HMPREF0534_0617 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKDKEISANDFEPTEHLSDKHHMAIPWHDFFTNDNFTPAYEANLVERAAIVGRIGLMMLSYGTGAWRVRDSMNTVARTL
KMTCSVDIGLVSLEYTCMDAHHSYTQAISLPSTSVNTTKLSQMERFIKEFDQNGSEMTIGEIHSRLEEIAHSKGNYAPYQ
VGLAAALACSAFVFLLGGGPVEMFCSFIGAGLGNYVRRKMIDHHITLFAGVAVAVAVACLSYLLALSLMQLTFNVSSRHE
AGYIGAMLFIIPGFPFITSGLDISKLDMRSGLERMTYAIAIITVATLVGWIVALMVNLRPENFQALPLSALMLFLLRLPA
SFCGVFGFSIMFNSTPKMAAIAGCIGAIANTLRLELTDLTGIPAGAAAFLGALVAGLLASIVKRKIQYPQISITVPSIVI
MVPGLYMYRAMYNIGLTSISVGTLWMTKALMIVVFLPMGLIAARILTDSKWRHNG
>SEQF1778_EEI66042.1 LysR substrate binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNTRDLQYFAMLVKLKNYTQVAKYFNVSQPSITQAIRRLEQEFDTKLVRKDRVHRDEMITRSGQLLYEKALAINKKIDIA
HQEIARSDQRQIKFGLPPIIGKMYISHIIGNLSKQLLQRIKIVSVGSHELLSELQAGKIDIAMLGSIAPIDQNGIFAELI
TARPFSIIVSADHPLAKKKKVSFQDLTNEIFINYDQQYVHKAAFQAYSTYAQINPQTAIYKVPNVSWIKELVRQNKGISL
MVKDAVKDEPGIVALDIKDPIPEKFFISLATREDYILSDDEQQLITKLKEITPVA
>SEQF1778_EEI66043.1 hydrolase, alpha/beta domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDFKTSDGIRINYYVYGTGKPVVLIHGFGGYQQIWCLQIKNLIQQGYQVITYDQRNHGASTRDEQLDSIEPLIKDLYELL
NHLNVTKPFLIGHSMGASVIYGFLSYYTDFPLSGVIAIDQSPKMFNTVQWPYGYMDITRASYKLKLKEHGNVRETLNGVP
SQVISKLEPEKEMFPFIRAENLPLLYDHAKRDWRLTLEKINIPTLLVTANQSPYFNGKFADVMRQANPQFISHQAVDQSG
HVIMAEQANKFNKIMDNYLKEHQ
>SEQF1778_EEI66044.1 triphosphoribosyl-dephospho-CoA synthase CitG [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQTIFDHGEYQDILAVLKNKDERVKIQNQLLKTNPSMTVVAAKLNIPGPIKNNKKIESFFIAGLNEFEKMLLDAGIVFIS
KKEWLDKKTGPERFYLVDTGAILVKEITSHFEELKPSYRLFDLDVLANDSGTIKSLSRSDVNQPARKCLICGRPAKECGR
SRRHSVEELQEKVSQLVCVELVYQEKENIANWLTQLAQRALLYEVSAWPKPGLVDPVEHGAHLDMDIFTFINSSISLRNY
LHQAALLGIMSRSANLSLIFEKLREYGKKAEKTMFVATNNVNTHKGAVFSLGVFVTATAYSLQHLKRFDANDIKNVIKKM
LKNLINDDLKHLSSKKILTAGEKQYLKYGLSGIRGEAHAGYPTVFKYGLPTLLTSNYDWNSRILITFLELALHIEDSTLI
KRAGDPAIQEWKNKEIKECLNLGGIRTKAGQQKLTEIEEKFTQQNLSLGGTADLLIVTIFLALVKEGLPDGLQNK
>SEQF1778_EEI66045.1 citrate lyase, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRRANTLKNKVGREISDKILDSTNYKPFETTEIGHPIVHYTGHDVRVTKGDDKLVDSLDDVIKNNLKDGMTISFHHHFRN
GDFVFNMVMDKIIKMGYKDLTLAPSSLTGVMNDKVIEAIKAGTITNITSSGMRGSLGEAVSHGLLKNPVIFRSHGNRARS
IENGNIKIDVAFIGVPNSDRMGNANGMNGESALGSLGYALVDAKYADKVVLVTDTIADYPNTPASIQQTQVDYVVKVDKV
GDPDRIGSGATRFTKDPKELKIAKMVNDVIVNSPYFKEGFSFQTGTGGAALAVTRFLRQAMIDNNITASFTCGGTTSPIV
KLLEEGLVKKVMDVQDFDKGAASSMKSNPGQIEIDGSWYADPDNKGAMVDQLDIAILSALEIDTDFNVNVLTGSNGEIRG
AVGGHQDAGTAKMTIISAPLTRGRIATIVPAVNSVTTPGSSIDVVVTEVGVAVNPARKDLIEAFKNVPSIPLISIEELQQ
RAEKIVGKPEKIEYTDRTVALVEYRDGTLIDEIKQIKD
>SEQF1778_EEI66046.1 citrate (pro-3S)-lyase, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEERLRRTMMFVPGNNAGMVKDAGIYGADSIMFDLEDSVSMAEKDAARMLVYQALQTQDYGDSELVVRVNGIDTPFFKND
VFAMVKAGIQVVRLPKVESAQMMLDLVKVVEEAENKFGIKPGTTHVMAAIESAKGVLNAPEIAASTDRMIGLALSAEDYT
TDMKTHRYPDGAELEFARNMILHAARAAGIAAFDTVFTNMNDVEGFKRETEHIHELGFDGKSLVNPRQIDWVNKIYEPTK
KEIENALDVEAAIEEAHQKGSGVISMNGQMVDRPVVLRAQRVIRLAKASNLINEEGEYIEK
>SEQF1778_EEI66047.1 citrate lyase acyl carrier protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDIKKTALAGTLESSDIQITLSQGNNGINIDLDSSVEELYGNQIRKVITDTLTAYGIDNANVKAVDKGALDCVIKARTMA
AAQRALDTADQPDWEVF
>SEQF1778_EEI66048.1 [citrate (pro-3S)-lyase] ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQVKRITIRRILMEVREINIHLKRNLTKWQKFLRFNGIEVFSEKETSSIDKTFVWEENGEILATGSIAGNVLKYIAICSK
VQGHGETFNSLVSKLENEAAMMGRFHLFVFTKPQYSQSFQYVGFHELAKVKQGTVLESGTPDIHDYISSLPNFNDQKESK
IAGIVMNANPFTNGHRYLVETASKENDHVYVFVVSEDVSIFSFSERFKLVKAGVADLPNVIVVPGKEYMVSYATFPAYFL
KDDQNVGRFQASLDATLFKEQIAKPLNITSRYLGNEPYSKTTNIYNEELNRVLPPDVEVKIIDRKKNKDQDIISATKVRA
AIANDNIELVKKYVPDTTLEFIKNNWSELQTRIKEGSIK
>SEQF1778_EEI66049.1 malic enzyme, NAD binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEDKEILSMHAKNQGVLNIAPQFEVKNRKELGEAYTPGVAIISKLIERYPELKDKYTLSGKLVALVTDGSAVLGLGNIGP
AGGLPVVEGKALLYKDLANVNALPLTVEQVPVNEFVATLKNMQESFAGFHLEDIKAPRCFEIEEKLSKVVNIPVYHDDQE
GTAIVVLAGLINAARVVKKNLKDLKVIINGVGASGVATARLLFAAGIKNITFVDIDGPVHVDSQNYNHYQTDLVKQSADQ
TPYKNLSEAVKDRDVFIGLSDADVLTSEQVKTMAKNPIIFALANPKPEIDPQIAKDADAAVMATGSSQYPNQVNNILVFP
GLYKGLLSADLNKVDFGLEKAIASALANMISNPTAEKIVPGVFDDGVVNTVAKAVQHYASQKNND
>SEQF1778_EEI66050.1 putative sugar-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVFLYLPFIESLLISLLISYHLFKKIKIITVFFKYLKNNDILKTTLSMKGIKIMNSQHQQLLGNLAQDYYLSKMAISDI
SKKYNLSRYLIMKYLDEAFSSGIVDISIHTDYDRNAQLERELSNSFDIKNVYVIKDPSNPLDRDKIIANFAANQIQSLIK
EYKIIGLSWGETIYTILDHFSKHSSRNLVFTQFMGENMKYKSSAASMRMVQKAASKYDCPYYTIPGPLYILNDEARNDLY
SEPAFTEAFKVANKMEMIVCGLGTLQSIDSIPAWHDYKKRLFKGVSLNQIAGMAFGRPYDINGNFLIHPTNDKTLSIPLN
KILNVPIRFAIVQRKSKYQAALGALRGGLFTDMILTESIALRIIEELR
>SEQF1778_EEI66051.1 transporter, DASS family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLAKFKAKAWAWPVAVGLILWFCGPIRPDGVSMAAWHMFAIFVATIVGCITQPLPIAGTTLVGFTIMVLVGIVPMEEAL
KAFENSSSWLIAMAFLLSRGFIKTGLGRRIALVFVRSFGQHSLGLAYSIMGIDLVTSPAIPSNTARAGGVVYPIIKSLAE
TYGSDPKKGTRKKIGSFLVFTEFHSNLITSATFMTAMAPNLVVVALAKTLNINITWVGWFVAGVLPSVLCLIAVPYIIYK
MYPPEIKETPNAKTWANSELEKMGSMKLSEKLMGLIFLLTLVLWMLTSFIPAINATFVAFLAIALLLITGVLETKDVLNE
SGAWNVLIWLSILVFMASELTKLGFIKWFSNSIEGALHGVSWIWVLVVLVVVYFYAHYFFASATAHVTAMYTAFVSVAIA
AGAPAMLTAMLLAFTSAIMGSTTHYANGPASILSSSGYVTQSEWWKMNFILGIFYLLVYGIIGTFWMRLIGIW
>SEQF1778_EEI66052.1 L-lactate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLGYHHKVVLVGDGAVGSSFVFSLLQTTQEIDELVIVDLKKEKATGESLDLQDITPLTSPVNIHAGDYSDAADADVVVIT
AGVPRKPGETRLDLVSRNTKILSTIVNPIVESGFNGIFVVSSNPVDILTTVTQQLSGFPKHRVIGTGTSLDTARLNVLLS
EKLNVPVNEIDALVLGEHGDTSFGAFDEATINGKPLKEVTDLTAQDYSELEKAVKERGGKIIEGKGATFYGVAKYLAYIV
KAIIENRNIMLPISAPLMGQYGINDLYLGIPAIVNRTGIEKVVDYGLSDTEIEKLKYSAAKMKDVLDGVVIKN
>SEQF1778_EEI66053.1 flavocytochrome c [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEKFQPLSVSKLDNDYDVIVIGSGGTGLSAAIQANELGMKTVVLEKEEELGGNTNRASSGMNAAETNVQLQHGVIDNVA
DFYHETYQDGGRLNDKDMLGYFVYHTAPAIDWLADHGIKLDDITITGGMSRKRTHRPASMAPIGGFLVKSLLEVVQKENI
PVFNKVKVNKLLQDDEGKVIGVEANADGLIKTIHAKAVILATGGFGASKEYMKRFRPDLADYKTTNQPGATGDGLKLAEG
VGGELMQMDLVQVHPTVQQDNPHVYLIGEAVRGEGAILVNAEGNRFVNELNTRKIVSNAITSLPEHSAYLIFDQGIRDHA
KAIEFYDKVGLVVHGDTIEDLAKNLNMDTENLKKTVATWNEAVENHDDKEFHRTTGMDRGITKPGFFAIHIAPAIHYTMG
GIHINTKTQVLDGNGDVIKGLYAAGEVAGGLHGNNRVGGNSIAETIVFGRQAGQQVTVYARGLK
>SEQF1778_EEI66054.1 fumarate hydratase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEYRTEEDTLGPVKIPAEALWGPQTERSRNNFPTGQYMPLAIIRALLNIKKAAAQANMETKAISEEKGNLIVKAIDELL
ALSDEELRKDFPLKVYQTGSGTQTNMNTNEVVAHKAHEINPDIEILPNDDVNKGQSSNDTFPTAMNVVALEALDKLKPAV
QHLIDELKVKEEKYMKTVKVGRTHLQDAVPLTFGQELSGYIASLEHDLDYIKTLESTLDELAIGGTAVGTGLNAAEGMPE
KIAEKLSEVYGLNLTADSNKFYGLANHSGLDVVHGALKTLAADMFKLAQDIRFLASGPRAGYGELNIPANEPGSSIMPGK
VNPTQAEAVTMAALRVFGNDTVVTMASSQGNFEMNVYKPVLIDAFLESADLLTGTITGFADKMIHGMTVNEKRMEELVDN
SLMTVTALSPHIGYHDSAKIAQAADKAGSTLKEAALKSGKLTEEQYDEWMDMLKMTNVDRDK
>SEQF1778_EEI66055.1 malic enzyme, NAD binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLRKGMQILNDPFKNKGTAFTIEERKKYGLLGLLPSCVRTIEEQADEIYRLYQSKNSRIEQRHLLMEVFNTNRTLFFYLM
EKHIAEFMPVVYDPVIAEAIEQYNERYIKPQDAAYLSIEHPDLIKEELADAADGRDIRLIVVTDAEGILGIGDWGVNGVD
ISVGKLMVYTAAAGIDPSQVLPVSIDAGTNNEKLLKDPHYLGNRMKRVEGQPYFDFIDKFVDAVEGLFPKSLLHFEDFGR
GTAARILDKYQDKILTFNDDIQGTGIIALAGVLGAMNISKEKLTDQTFLTFGAGTAGMGIAKMLYDELIRQGLTPEEAKK
HFYLVDRQGLLFDDTPGLTPKQKPFTRQRSEFANADELTNLLAVVKAVHPTVMIGTSTQPGSFDEAVVKEMAAHTLRPVI
FPLSNPTKLAEAKAADLLKWTDGKALIATGIPVKDIEYNGTVYQIGQANNALIYPGVGFGALAAEAKVLNDNMLAAAAHA
LSGLVDPEKPGAAVLPPVSKLTEFSKRVAERVAESAIDQGLAGDGITDAKKEVEEKIWKPRY
>SEQF1778_EEI66056.1 LysR substrate binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLNDLKYYQALVKYKNFSQVAAKFNVSQPTITMAIQRLEKDFGTSFFVRDHVHKQLHITPTGKQFAIHVDVILNELKIA
HQEINQAESSSIRFGLPPIIGNYYFPPLTPLLMREGLLSHLETSEHGSKEILKMLKHGHLDLALLGSLNPLKEVGLKTTE
LAEYPFKIIVSKRHPLAAKKEIDFATLKNERFIVPDTEFFHEQAFKQISHLAHFRPQVIYRTADIHVIKTMVAENLGIAY
LTSLAITPEDNIHSINVTSPLKQSFRLSAVTRSTELLTAPKQKLWDLLTTKKE
>SEQF1778_EEI66057.1 peptidyl-prolyl cis-trans isomerase, cyclophilin-type [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYPQLSLDEVKGPKAVIETTMGTITAQLFPKYAPKTVENFVKLAEKNYYDDVIFHRVIPDFMIQGGDPTGTGRGGESIY
GHPFEDEFSEELFNFTGALSMANAGPNTNGSQFFIVTNEHVPENMIDQMKAVGYPQEIIDYYEKHGGTPWLDFHHTVFGQ
VLSGMDVVEKISKVKRDAMDKPEKDVIIKTIKIEKEK
>SEQF1778_EEI66058.1 zinc-binding alcohol dehydrogenase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKRENDIPKTMKAWAVTTPGPIDGKKSPIEFTEKPVPTPKRGEVLVKVLTCGVCHTDLHVTEGDLPVHHEHVTPGHEIV
GKVVGFGPETQRFKLGERIGIPWFRHACGVCKFCRSGHENLCPHSLYTGWDHDGGYAEYVTVPEGFAYRLPEKFDSLEAA
PLLCAGIIGYRAFERANVPAGGRLGLYGFGGSAHITAQIALAQGIEVHVFTRGEDAKKFALELGCASVQGSYDPAPVPLD
SSIIFAPVGDMVLPALASLVPGGTLALAGIHMTDIPMMNYQKEIFHEKTLTSVESNTRRDGEEFLTLADRLNIHPEVHEY
PLAKADEALRYVKHGDIKGACVLRVSED
>SEQF1778_EEI66059.1 hypothetical protein HMPREF0534_0635 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYQNLMMGPNSIIDWEKDRTNAEIALQLAEQTWITNKTTDEEYVVMDIFEDYSVTDFKVATHPKLNEHNRRYLYRSLSIN
DIMNATAVGEKILDDYQDYLESRGKSESIVDRDLDCAADYIGYCEALGESVLDDITLVYHYLINYEKLHNDRPTDTGFHS
KSDAFREFGKFLRAEDLFSSEDYDLFVQAISQGLKDLGSKQRMYHLQRIIRDMQRQVRNQREHAIQYVNKQYTIYVELSD
YHPKMWRRFTVSGDMRLDMLCFAILAAFNADGHHLFELHQGNTHYQLPILDSGFGQSKDITQSWVGDCNLDHEYDLIYDF
GDMWNFKIRFEEVKPKRLPAHTSPQIVSGFGNGILDDIGGVEGLTQAAKDDPVINAPLNIPKFKDQWSRQIEKIRHSYE
>SEQF1778_EEI66060.1 hypothetical protein HMPREF0534_0636 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIMNNLMSLPIIVRYPQRFNDSRSFIAAFKREFLSLLEVSPIPHAKIRMIRDAQFSKVVFTRQIQPETQQQL
>SEQF1778_EEI66061.1 hypothetical protein HMPREF0534_0637 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAALEGIHPMTKVTGFLPIIFSKYGLIKLINNAFQNKINISEIIGGVDRVIIAVENSLAQHLHINSQVIALSDLLETNV
>SEQF1778_EEI66062.1 transposase, IS605 OrfB family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTVLKGIKLRLYPNKQQQAQLCQMFGNDRFVWNQMLDMAKQRYQNNPSSQFVDQYGMDVLLKPLKQEYPFLKRSDSTSL
QVVNHNLYQAFQRLFKHLGGYPRFKSRRSAKQSYTGKSKIQIVANRYLKLPKIGYIKTSKTRQLTHCKIKRYTVSYDPSG
RYYLSLQVETTVQPLSKTSQQVGIDVGVTNLAITSDGHKYAKFDAVWLTQQAQHWQSKYSRRRHQAAVSVRQWNHNHQDV
KEELNDYQNWQRARIQKARYQRRVADQRRDYLHKLTMALVTQYDVIVIEDLKVKNLQKNHHLAAAIANASWHQFRTMLGY
KCDWYGKQLITVKPNYTSQICSHCDYHSGSKPLAIREWTCPKCGAHHDRDINAAVNILHKGLKAVG
>SEQF1778_EEI66063.1 hypothetical protein HMPREF0534_0639 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MINQNLDIFDLRKIQINKTKAELENNGKRQQKEVSSDMLGTFMLVDRDPVKIIQITEANMIPELLPLRHQRMLASRFSFF
RGTAELMEHDLKRQAQSNLPIIICGDAHVNNFGFYASPERKLLFGLNDFDEARIGNWESDLKRLLVSAELAGEENGFDRN
DLYHLLQLTTKTYRHTIKSANKMSLSQLFYFSFAYEDMGKAIESFGDISTQMQTVLNKVLKKSQRSNSEEIIQKMATINN
QGHLVFRDNPPRARHLSAVRYQQIVKGYNKYRENVRQDVRVLLANFHISDIIRYSVGVGSFGTRCYLIMLTGNDNSHIVL
QVKEAMPLRYNLLSLPVQQAIRNGGIAGQRIVTAQRVLQSSSDRFLGSTTFGGRSYYIRQFRDMKESINVNKLDFESFQF
YCQTCAYLLAMAHFQSPTAPMIRGYLKHQKILDTLLPNWALKYVDQVTADYGQFKLAIAKGKLIN
>SEQF1778_EEI66064.1 hypothetical protein HMPREF0534_0640 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNDIYEVYKMTKNRWDKFKKNFSKNFIDFLMIFAAEQDFINKHRRKSSVIKEQDRYGSDQRKKSEK
>SEQF1778_EEI66065.1 aldose 1-epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEISKVPFGTYKDDPVTKYILTNDNGVQVGILNFAGLLQSFKVPTKDGGKADMILTSENLDEFTNNGFCTNRLIGRVAGR
IADGKFSINGKDYQIEQNEGKNALHGGTNGFYSHIWHVDSTKATDDSVSITLSLTLSPEVDTYPGKMHVTATYTLTNDDF
LSLKMSATSDADTLFNPTNHTYWNMAAANVPTVDQLKLYVNSENHLAVDDGKIPTGEKIANEGTPFDFSTPTTMGDALEK
MSSTKENGFDDIWEVTPSLTKPVATLEDPESGRKMSLYSDRNGLVMYTMNSDDAAVYNHGQVHPHLGLAMEAQNLSDAPH
HPEFGDITLHPGEEKTYTIKWHVEY
>SEQF1778_EEI66066.1 hypothetical protein HMPREF0534_0589, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
FPPIEKILEAYTAIADGHVKLENDQALVTSSNEAKTYTVTFHDNTYTSNDNASYWQGYLGYPGIAVLMLQGKLPYSKELA
QQFAGVDWNKINQEYKRNYAQAADAVMTAKGIDKKKAETELHHVYNALKQLPIIVKRGSLRPPKAN
>SEQF1778_EEI66067.1 UDP-N-acetylglucosamine 2-epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQPPYKIMFLFGTRAEVLKLAPIIRLMHQNPATWQPVLVATGNSQLLNDTLAYLNFQIDFSVDSSNVTSTNEVELLSQLL
HNLNNVINAGQPDMILVAGDATTSLAASLISFYHHISLGHVEAGLRTYERYSPFPDEMHRRLTDNLADLYFAPTTSARDN
LLQEHHPAKRIYVTGNTSIDSVKHNLQEDFTHPLLQSIPADNRILLMTMRRKDNLGAPMKRVFHTMRDIVETNNNLDLIF
PVYPHPEEELLANDILGDHDRIHLITPLNHHDFLNIAARSSILLTDSGGLQEEAPALHRPLLLLRDETERQEAVSLGGVK
IVGTDPTTIQQAVFELLNDEKKYRQMELAEVPFGDGHASEKILKIVEKYLSQQ
>SEQF1778_EEI66068.1 DEAD/DEAH box helicase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEQFQKHFDEKYKQPTAIQKAVAPALKTDQSVLGIAPTGSGKTLAFTLPLLPKIMPGEGTQLLVLAPSQELAIQTTKVI
REWATLIGVSVQSLTGGANLRRQVMNLHQHPDVVVGTPGRVLHMLDNHHLKLGHLMTMVIDEADDMLQDDTLAVVEDIER
ATPLSTQLAFFSATKSPVLDELNVMFGRDIETIDVRDEDTSQGPVEHGYLSARTNAQKTATLRRLTSIKDFRALVFFNST
RTLNYAASRLRHEHVPVDTLGGRQKQVQREKAMRMFRKRQIKLLLTTDLAARGIDIPKLPAVINFDLPTSLNTYIHRVGR
TGRQGEPGLALSLGDDHDIRDLKKLLADSDYELTKLYIGDNKLTNQKPEEGQRVVSIKQQASRHLQKEQLSGETHKKMNQ
TLSGFSKPKKRRKKKNRKNKGIRLKHRRKNNEN
>SEQF1778_EEI66069.1 oxidoreductase, NAD-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKLGVIGTNIITDQMLDAAKKTGKYELTAVYSRTLEHAEKFGKPYGATEFYDDIDKFFEEGDFDVVYIASPNSLHYQQA
RKAIENDKFIIVEKPAFVNPSEYSAIESLLAAHPKARLVEAARHIHTKIYQAALKKVDEMKEHYIQGATITVMKYSSRFD
KVLNGSEPYPNIFTLKYAGGALMDLGVYAVYGAVTIYGEPESVVYFPTLTKTGVDGKGVAILNYDKFTVTLNFGKTANSH
LYSEVYGLKDTLVFDSIFDTRKVTYYDADQNAHPIEAPVEENSMTDEMNDFADLFNNPDDEEEMKKYKHWLELSKTVNSV
MYSLRQSAQLVFPSDNDQE
>SEQF1778_EEI66070.1 hypothetical protein HMPREF0534_0593 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKKGMLLFGAGLMAGLTSTLGFSRAKKSNNTISLPIFYAGTWQYYDKERDRSHKITISPELKLGIDNQIIPATVQQIKP
DKLVFLDRFGYHITIRANEQRPVSLTDEADDQVYTIQPLK
>SEQF1778_EEI66071.1 TIGR00730 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKRIAVYCGARDGNDPAFNHEAHRFGEWLVQHDIELVYGAGAFGLMGTLARTVLKNGGVVHGVITTELADRGAIYNELK
YVRIVPNMDIRKQTMMDLADGLLAFPGGFGTLEEITEAASWTTVGDNHKPVAFYNFNGFYDSLNDLFKQMNKAGFVEDPY
LNSICFSDQFDQILAFMQNYKAPAHRQYARK
>SEQF1778_EEI66072.1 lactate/malate dehydrogenase, NAD binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKIGIIGLGHVGEMLANQLVMNGKVDELVLIDDKDQLAIAIQADLNDAQTVLATHTKIIIQDYAALADADVLITAFGKS
ALMKQQPMAELETSYQQALQVGNKIFKSDFSGILINLTNPNESITAVLQQKVGLPQKQVIGIGTVVETARLYRAIAETAK
VAAANVTGFVYGQHDGHQVFAWSTVRVNGQPLTAAINGHHLDQSQLKIQANLSNWYTLDGLGYNVSAVTAWTLRIITAIF
ADEQLALPVAIYQPQYSTYISFPALIGRQGIGNLLLLKLYPLEEEEIKSAAATIKHQLDSLKNIKGE
>SEQF1778_EEI66073.1 hypothetical protein HMPREF0534_0596 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDWRDSWMGTDYDQLKAALKEPSLNAQLFSSQFGLEAKKHRILTNGRASRYPYPENLRSRQYNIYLNSGYTDDMMDFET
GPVVGAKNAVRQLKMLEQIVISHLRSDERLWPLSMAPGPTYQHDLEYLQTAFTKKWDQGTHDYLGKKYGIVQEILGDVHV
NFSLDGELINEIYHRFYADRYPNRIDFQNHLYFKLAQKFYLYQWLFTYLYGASPVSEDMPHSIPEDLELPVRSLRCSDYG
DDNFTNEQVTYTSYDQHFAELKHFMDNGTYYSMKEFFGPVRLRRHNHDMHDIDGALHKGIDYLEFRNFDLDPLSRTGISD
DTINFLELMLLNSILSPLPDNLEEQLAEAKKRNNEVALQKPKEQLPWMHEEAMQLIVELQNFIVEFNAPREYQLALKFVQ
RRVDDPSLTLSGQLADQLENGNLLSFGLKIANDRYTKNINFQHPLQAISDVYSDDVQQLVKAAIELGVQIDLQPTQVVLH
VGDHQESYNAQATFDFSKGARDVILSDFPEVQDFQEK
>SEQF1778_EEI66074.1 hypothetical protein HMPREF0534_0597 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFMTNNMIKANQIGSVNYIRTLKQSGLNAHEQLDLIINHHLQAYIDNYGFLQFSPTVYQFSPQLAPTSFFYPYFRDLVV
TAYSGKKGLKADLLGRKIHLFRSYLDRQNITFIRQYQRPSLSPEATDFQRLLSYAHDNHFKLDFKTGANYHNRYHHKFAY
PSNMKVQLVRNSYRRYANPARMIEFIVDIETGKFVSQWNIYRFDNQGRVDSDPTHYSTNQLRQIADTESFNYGIPYGEYY
VTGKYRHTHQRLDITQPTDSQLRRVAKKYWQAPIDYDDGGNYADLVRNMQDVIAWRGVPDSQRIKVYADYVNSLKEHQCK
NSGINHFFAKNKAYQQFCVPWWRRLI
>SEQF1778_EEI66075.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQWFDKQFTELTVNELFAILKLRAQVFNGEQQSSYPDPDDSDPLAHHVFATTNGEVVAYARYFIQNDVVTFGRVVVAPQA
RGIGLGGKIIEHLLSGIKVNFPNFKITIHAQAYVEDFYKKYGFESVGDHFMEAEREHVTMVHEPLNDIYDK
>SEQF1778_EEI66076.1 hypothetical protein HMPREF0534_0599 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNFSPNRRNVVNITDLNKFLTKMYGLMTLVVLLSALTAWLVMTVFAQQFTAFMVNNRWGMWLVILLPIILTFGINFNAT
RSPGLCLFLLILTAIVYGITFTFIAGAYAGTDIATAFVSSAGVFLTMAIIGTFSHRDFTRLGSYASAALIGMIIAMLVNF
FVQSPIINYLLSIVAVIIFTALTAWDAQRMKNIYTECNGQVSSNGLAVLGALQLYLDFINLFISFLDILGSSNER
>SEQF1778_EEI66077.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDFKLMPLNEKDLPIFVPAMKDSFNQAAQVQDSSLEDVLPTEDIYASLTCDNAHGFKAVVDHEIVGGAIVQIDDQTHHNH
LDFLYVDTAHQNKGIGYKIWTALEQKYPQTVLWETCTPYFDKRNIHFYINRCGFAVVEFYNQSHPDPNFEIQDSNNEMFR
FEKRITLDD
>SEQF1778_EEI66078.1 LytTr DNA-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVNCHIDPNIEEEHLDLFVREMNPQINNLLKGFTSTEPVLWCYDADQIIPIKFPDIFELTVAKTGTKISTKDHTYFYRE
RLSHFKSNLPNDFIEASVSTIFNYHYLDHLELLDNGLIDAILTNGSHIQISRRKIKNLKARLGL
>SEQF1778_EEI66079.1 hypothetical protein HMPREF0534_0602 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKYVKYTIGFSGIGVLIGLAISLVFNYLNGSTTYYPSSPNFVNQFAHPLNSVTVSVILWMLIGCVFGFGSLIFEFKNWS
LLKKTIINFCAYYAGFAPLAILCGWFPLTWINFAIFTLIFIVIYVIIWLLNWYSIKKEIRSINQQIKK
>SEQF1778_EEI66080.1 N-acetylmuramoyl-L-alanine amidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKRKKKQNLIYLSLIIIVAAIIGGSWFYSHHTREVSNSYAVSETATLSSGARVYNSLSAIQRANLPDQALVKVNRYYLT
SNDNDDTYARINYNGKNYFVRATDIELKMNNEINSYLTQSGLPHAKITKQISSIFEQRGYSTLSGNPRGVVIHDTGNENS
TISSEVSYMKQNYSSTRVFVHTFIDNQQIINIADTKYMAEGAGPYANPYFVQFEMPHEYTAASFANQLGNAAYYTAYILK
QNNLPVTKGTKDGGGTVWTHAMISSYLGGTDHEDPISYWSTSARKLFGTTYNINNFVELVQAYYNQM
>SEQF1778_EEI66081.1 6-O-methylguanine DNA methyltransferase, DNA binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIARFNYSSPLGKIGMQADEYGITEVKFIDQSKENNLNPTYPPIKDAVKWLDDYFLGNVPLTYPQFHLNGTDFQQKVWQQ
LRQIPYGTTVTYGQLAQRINSSPRAVENAVGKNPVLLFIPCHRVLGQNGKLTGYSGGLERKKKLLAIENIKL
>SEQF1778_EEI66082.1 hypothetical protein HMPREF0534_0605 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLAATAYGLGTIPTYNSVRFPAILHQTLNVPDDERFIVGISLGYSANTTINSYNSERRPVNEILHFN
>SEQF1778_EEI66083.1 hypothetical protein HMPREF0534_0606 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELQDAINQRHSIRQFTDKPVEKKMITKIVELAQRAPSWVNSQPWQVYCAMGDTLQEIKNAYRDQDIAGNQGDSDLPVMS
REDWAPQTQDNMKQWRHGIVHHFANFDEAHEKMTNASSTLYD
>SEQF1778_EEI66084.1 hypothetical protein HMPREF0534_0607 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTIFVILLIYKFIKGTFEYEKVTRFELIIIPVYSAIMMVLSLENVRSLTAAGLTIILLILGASIGFLQASKTQIKDTNKL
DSHQRPILKIKRNWPYLVGWLVSFAIGISVEVFYGAHINATEISHELFEEVLKDLSTIAFFRSHNAWFIWVLNVATSFTY
GACLMVRYPKIREAVRRKNKVTNTRSY
>SEQF1778_EEI66085.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRDCQMTNNDTRIELVTTVTPEHWDLLLSADPSKKLVQNYLQSGILFAQSKDGHPIAVMVLQELTSDKLEIRNIAVDPRL
ENHGIATRLLQDAVHFAKVHHYQQLQIGTGSTSFKQLYLYQKIGFRVTEIKRNFFVKNYGQPIHENGLLLRDMLVLTLAI
SDYYS
>SEQF1778_EEI66086.1 pyridine nucleotide-disulfide oxidoreductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNMKKYDDILIGSGPAAYKMANLLAKTDRKVLVVEGFEYGGTCPNYGCEPKIFLEGAARTVLQSQQLLGRGISQPAKLDW
EALMQTKLKRFDPWPGETRDIIKKSHDIEDGYASFVDNHTISVNGHQYQADHIIIATGQTPNILNISGKEYLHTSYDLLS
LKELPQRITIIGAGFVGLELATLVAAAGAEVTIVVHSDRVLREFTKAEDEALVNAMKQRGIKFSFNTDTQKVTQGKDGLL
VTTNHGEVQADYVLDATGRHPNIEKLALENTDIEYDRHGINVDGHLMTTVDGVYAIGDVINRKQPKLTPVAEFEGQYLFD
YLIGKTDQDIVYPTIGQAAFTFPEVARAGVNPDDVTGDSQYQVKTVALKYGSLYAGQNDHISTLTLVFKDQQLVGASEIG
DYAADDINNFLPIIGLKINGDEYRQKVMAIYPTLGDKVAGLLP
>SEQF1778_EEI66087.1 ammonium transporter [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQVNTLFIMIASILVLLMTPGLAFFYGGLVNRRHANNMLLTVFMMCGLAVILWITVGYSLSFSGNHWGIVGNLNNTLMI
HVPIDAITKTGIPIGDYAMFMMMFAIITPAIFCGSVVGHGRFNFLIMFTICWSIFVYYPLVHMVWAPHGLLARLGAVDFA
GGLVVHVNAGITALILSAWVGRRKDVHSQRNNLSWVLIGTALLWIGWYGFNAGSALAVNDTAVQAMLTTTISCSSAMVTW
MLLDRYQFNHVTLAGVCNGAITGLVAITPGAGYVTLGGSMIIGIVGAIVSQYFITKIKPQLPIDDVVDAFGCHGVSGIWG
SIATGIFASHQISHLVPNGLLFGGGLHLLLVQIFVTLLTIIFIGVMDIILIKLLSIVLPVSIDNEKLAAIQSK
>SEQF1778_EEI66088.1 hypothetical protein HMPREF0534_0611 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNHYPRAIFNGHSSMDIYRKAFYQEISQLHQPIINWSVLFI
>SEQF1778_EEI66089.1 peptidase, M23 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEDKLIFKPSHLKSKVLSTLTVCGGALFLLSGNAAADDQTNDVQQPVTPQQTTNEQPNTSTVDVQTPNTYNGVAVSPQAS
ETTQNTENYNVVPTQDNNQEVQHKEATQPQNPNNYGYLDSVSLSNNELQVSGWQATNQAADKPYHYVIAYDNTANTELGR
QQVENVSRPDVAQAYPDATNADTSGFNSTIKLNTTNEDYTNHSISVVSRYSDATNGEGNHVDYWYPAFTFDQGNHAWLDD
MHTENDQLHISGWNATNQATNKDYHYVILYDTTKGHELSRQLVDETTSQRPDVQKAYSNVNNAGKSGFNVTFDLSKLFFD
ASDQLQVISRYSNAENGEGDRVDYWFAPTSRENQGYLDSANFSNGQLVVNGWHANDASTIAPNHFLILFDQTAKKQAGVI
NATQIDRTDVANAFKNIQTANQSGFSGTFNAGTIIPGHEYSLVSRYSTSANGNGDTGHYVDYWFNDLKFDQARYSIDSFT
QNDNNGFHVTGWMASDFAINRPNAYVILLNNGKEVTRSKVTLTDRSDVAAVYPSIYNSRKSGFSTDLNVDPTTLNGELSF
VLRFTSSEDGNSNYSDQYTNKYATNAGSFDTVNVSGNQIKVAGWHASTQTAGKDYQFIIVLDQNGHELTRQAVNTKDITR
NDVQKVYPWLANSVKSGFDTTVSINDQINHKVVRLIHHYSNQANGEGSYVDYYSSPISVYSEFQNENGTTFYYDSRTGAK
KTGWVNINNNNYYFGPSTGAMFTGTHTVDGKSYDFGSNGVAVENDKWGWPFPNVGEGHFGGAQLFGVNPGGQFRRNGFHD
GLDFGSIDHPGSEVHAIHGGKVTQIGYTAGLDWYVLVDTGEYLTVYQEAFSNKNNIQVRVGQQINTGDVIGRRDTAHVHI
GVTRQHNFNIALANSFNNNGTWLNPLDLIRNGSK
>SEQF1778_EEI66090.1 bacterial sugar transferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEKVKIKQQSKSYLFWKRFFDIVLSSGALVFFSPVFLAVFIMNRFGDNKGPLFYKQERIGWHDKPFKIYKFRSMVVNAD
KILEDDPELYAKYVANNYKLEPEEDPRITRLGEWLRKTSIDEIPQFINILRGEMSIIGPRPVVKKELAEYGDRVDKFLSV
KPGAMGLWQSSGRSNIPYPERCDVELKYVDEASLAFDTKIMFKNIISIFKRDGAY
>SEQF1778_EEI66091.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPKLSIAVPCYNEEETIPLFYPAVEKVVKQMPVETEYWFINDGSSDGTLTELRKLHTQDPERVHYVSFSRNFGKEAGLYA
GLQAATGDYVVVMDADLQDPPEYLPEMYKDISTGEYDCVGMRRIDRKGEAKFKSFLSNQFYNVINKISDTKIVSGARDYR
MMTRQMVDAVLSLTEYNRFSKGIFNWVGFRTKYLPYKNVERVAGTTDWSTWKLFKYAIDGITDFSEAPLAIATLAGGLTA
FISIIGMIIVIIRKIVEPGSSAFGWASMVCIILFLGGIQLLCLGIVGRYIGRIYMQTKKRPIYIIKEKK
>SEQF1778_EEI66092.1 hypothetical protein HMPREF0534_0578 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNIKILVAVHKNYRMPDDPIYLPVFVGKEIHPTVNHTFQGDNTGDNISKKNPHYNELTALYWGWKNLDVDALGLVHYRRY
LTLGHSKDLSTILNHEQVEELLKDADVILPKKRHYYIETNESHYLHVHEHEPLEITRQVLKEKYPQYLPAFEKVMKQTSA
HYFNMMIMKKQPLDEYCTWLFDVLGEVEKKVDYSDYTPYEQRVFGFLSELLLDTWLLTNPQYKTVEVNRVFLEKQNWPLK
IAKFLKRKVTGHGEH
>SEQF1778_EEI66093.1 regulatory protein RecX [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLRRNLKMAKISKIEAQKRKGRYNIYLDGKYAFPVAESVLIQFRLMKGTELDEKQIAAIATADQQAKAYSRMLDYLSYQM
RTESDIVKKLKEIDTPEEFVEPILKKLRGQQLIDDHAYAASYVRTMINTDLKGPRVIRQYLRQKGIGENDIDDALTQFTP
EVQAELAKKLAGKLFRRYRNQPERRREQKVKQGVMTKGFSSSVYEMIKDEVVPQPDLEQENDLLAKEAAKQWHRTRRYQG
YEREQHFKQAMYHKGFDLDDVQSWLATQDFQ
>SEQF1778_EEI66094.1 hypothetical protein HMPREF0534_0580 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQMVRNFKSAKIQLTLTNSEHPKGVKHPFNNIIEDVTNEQVAQFSAAIEMLTAEKCLDTDIIVTSQVALNN
>SEQF1778_EEI66095.1 hypothetical protein HMPREF0534_0581 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRTLSLTFKGSLGKKHSLKLNYASGDLDAETVRKAMQEIAQTHLFTKEGEDIYQQPLSAKYIDTVSTVIFNDEQK
>SEQF1778_EEI66096.1 YihY family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKEPGKGKTFIALLIQHITMAQISSSAAVLAYYTLLSIFPAVMVVGNLLPMIGIDAKTILAYLSTAIPESVYDFIQPLI
YDFLRRGSGGVLTTGALIALWSTSQGIAAFQRSVNHAYGIAENQNPVMNRIVSFVWMIVVLVIIFIIIILYGFGEQVLKS
IQPIFNFRRDYISLFSSLRWPVTFGVLFIALTLLYYFVPNAKVRLRYALAGSFLASLLWMGLSRLFSFYTILFSHSVISY
KTIGAFIAMMVWLDFSGYIIMLGAALNAALQECHEGELHAKKHFWQLVERKSTNKNGG
>SEQF1778_EEI66097.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDEQSSNKKMITTFGLVTMIITAIFGFGNVSNAYLQMGYGSIIWYALAGICFFFPCGLMMAEYGSTFKDVKGGIYSWLAG
SVGERIAFVGTFVWLASWIVWMVSTASRIWITFSALLFGKDTTQQWHAFGLTSTQLIGVLGILLILGTTWCSSRGMTAIA
KVGSLGGIFTIVVNIIFVIVSVIVLVADKGILKQPIHGASTFITSPNPQFQTPIAIISFVVYAIFAYGGMESLGSVTDSM
KNPEKTFPRGLIIASIFTIGTYVLMIFMLGWSVNYQQTLTKSSVNLGNVTYVVFNQLGVTMGDTLGWSHGAALTFGLIMT
RIVAFAQTLGFLGALFILLYSPIKAFILGSNPELWPKKLTKLNKAGMPANAMWLQAIIVSIIVFLVAFGGNAAQQFYLIL
TDMANVSTCFPYIFLIGAFPFFKAKKDLDRPFVVFKNRFWTDILVCFVELILIIGIVFTFVQPLLQKDYQTAFWTLAGPI
FFAIVALVFYQISAKRHHVEG
>SEQF1778_EEI66098.1 transporter, basic amino acid/polyamine antiporter (APA) family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEKKGINTTELTLLIVGSTIGSGVFGITSDLATAAAPGPAIIAWIIVGVGVLTLVLSLTNLSQKRPDLDSGIFSYAAAA
FGPLGEFISGWAYWLSAWLGNIAFATIMMSALGTFFPSLFANGQNLFSIIVAIILTWVLTFLVNRGIESAAFINSIGTIC
KIIPLVVFVICVILGFKAKIFTADFWGNVTQNLSSKIETGSIYDQVKASIMVMMWLFVGVEGASVLSSRAKTRTDAERAS
IFGLVSLLVIYIVVSILPYGVMTRAQLAAGGQPALGAIMQHLVGTWGAALISIGLIISVLVSWLSWTMLPAESLMLMADD
ETLPTSWGKLNDKKAPTRALIITGVLQSIFLFSLLFTTYAYNFAYTLCTAAILICYLLVGIYQMMYSWQHQEWGQFVIGL
IATLFELMAMVLSGWKEIMVVSVGFIPGFFFYVQACKEFHHSITVKEKWAMGIIAVFAVISLVLVINGTISIN
>SEQF1778_EEI66099.1 dipeptidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVEIAHFGVEAWLNKWEKSATYDISQSTIASLSMHDLLNLDGNNGEEFYEMLDKQQMNYGWIEGSPEFKEEVAKLYHHVD
PENILQTNGATGANILALYALINPGDHVIAEYPSYQQLYDIPKSLGADVDYWHIHEEDNWYPRIDDLKAMVKPNTKMICL
NNANNPTGTVLDKEFLEQVVEIAKSVDAYVLVDEVYLPLDHPEKFAQIIDLYDKGISTNSLSKTYSVPGVRIGWTATNAE
VADIFRKFRDYTMICGGVFNDQLATYVLRHRDQVLARNRKLVLGNLAIYKDWIDHEDRASVIMPQAVSTSFPKLDVPVDI
HTFCENLLHDEGVLLVPGDAFDTPGHVRLGYCAPEATLKEGLKRLSKYMHQYD
>SEQF1778_EEI66100.1 methionine aminopeptidase, type I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISLKSPREIDAMEKAGAALAAMHLGLRKIIKPGISSWKIEEFARKYFKAAGAKAEQIGFEGYKYATCVSVNDEICHGFP
RKKLILKKGDLVKVDTVVSVDGAFSDSCWSYAVGEVSPEIQKLMDVTKKSLFMGIDQCVPGNRIGDIGAVIQHYTEDENG
YGDVREFVGHGIQPTMHEDPMVPHYGEHGQGIRLRNGMTITVEPMINTGTWEADTSDPSGWLAKTADGGWSCQYEHTLVI
TNDGPKILTSQDPEADADYMYDDNYAKYLDHYREIAEKVAKQFEN
>SEQF1778_EEI66101.1 putative nrdI protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKALVVYATITGNNEDVADIITDALEDLGVEVDEVEMTMADPADFEEADICVICPYTYDEGALPEEGIDFYEDLQEEQL
AGKVYGVAGSGDTFYGDDFCVAVDKFGDALAKTGATKGAENVKINLAPDEEDIQKLDTFAKQLVEKAAKLND
>SEQF1778_EEI66102.1 GtrA-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKDLWVKYKSIIAYLFWGVVTTVVNLAVFQILSPGLHWNVALATVIAWFASVLVAYFTNKVWVFGSHYTTVSDFIVEIF
RFFFYRGLTLFIDLIITYVGIKVLKFDTPLQQFIVKFIDNVIVVIANYIFSKWLIFKDNRDIADK
>SEQF1778_EEI66103.1 dTDP-glucose 4,6-dehydratase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METFKNIIVTGGAGFIGSNFVHYVVNHHPEVEHITVLDKLTYAGNPANLDGLPKDK
>SEQF1778_EEI66104.1 dTDP-4-dehydrorhamnose 3,5-epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGKLNVQTTKLQDVKIITPAVFGDHRGFFEETYSDRDFKAAGIDFNFIQDNQSLSTHAGVLRGLHFQRGKAAQTKLIRVV
TGAVLDVIVDLRKGSPTYKQWEGYILSASNHRQLLVPRGFAHGFLTLTDNVNFVYKCDNYYDAEADGGISFKTPELNIDW
PIEFDKAITSEKDAAQPTLTEFEKDNPFVYGEI
>SEQF1778_EEI66105.1 glucose-1-phosphate thymidylyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGIILAGGSGTRLYPITRGISKQLIPVYDKPMIYYPLSTLMLAGIRDILVISTPEYMPLFQDLLGDGSNLGLNFSYKVQ
EEPNGLAEAFILGEDFIGDDSVCLILGDNIYYGAGLSDLVQSAAKKTDGATVFGYHVNDPERFGVVDFDDQMHALSIEEK
PAHPKSNYAVTGLYFYDNQVVDIAKNIKPSDRGELEITDVNKEYLRQDKLDVKLMGRGYAWLDTGTHDSMLEAANFIATI
EKRQNLKVASLEEIAYRMGYINKEQLVELAQPLKKNDYGQYLLRLAQQD
>SEQF1778_EEI66106.1 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASDSNLKNNQFRVVLPVIFTFGASLVFFQGNAHADDTNVTANTAVTTTQTSDNQQSSNYQNANVALMTAQAVQTHAAEQ
TANTDPNKGAVDISAENAQNVANAPAVDTQPNVSTNQISNTQADPENGTASTTVSGAGNINTNGLSARNVQFLESIHQGA
VDGWKQFGVLPSLTGAQAIIESGWGQSALTTQGHNLFGIKGSYNGQSVTMPTYEYYGGRYVQINDAFRAYPSNYESIVDH
GRFLKENSRYSNLIGQKDYQTVTRLIRQDGYATDPQYTNTLNRVIRQYNLTAWDQEAFNDNINTGHIDNVSVQGDNLKVE
GWHATNNYDQSMHHFIILLDGNTKQELYRQEVPGTYRQDVQNVYPNAKISGWGGFSLTVPNSANFAGKAIQVVSRYTKNT
NGEPNGGDDLWFNSVNLNTNAGYLDNFNIDAATNTLNINGWHATDQSAGKDHHFIILYDATKNRELGRYEVNSAIRNDVA
KVYNVYNAGKSGFNLQVNISPALIGDNIQVISRYSNATNGEGNYVDYWFAPKTFNANQSYLDKIEISDNQVHVSGWQAAD
ASVKQQNHFVILYDATTHREIARKQVSNVSRPDVQRAYPNIANAGKSGFDVTFDFNRAAYAGHQLQVISRYSDANNGEGN
RTDAWFTPTTVPSNNQGFLDSFVVKNGEVTVTGWQATDQSYNQKNHFVILYDATTHREIARQQVTNLDRPDVQKAYPSIY
NSAKSGFKAAFKLDSSLIGHEIQVVSRYSDANNGEGNRTDFWFNAIKLPQNLY
>SEQF1778_EEI66107.1 hypothetical protein HMPREF0534_0561 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTSLDKENKRSLLVVTLSLISVIGINITIKTNDKTIFGNSLYSLLAFIAIFLVINKSSKIPRTKRKNVISLILGITISIC
LILGRNTLLFDDSQIFKLKTWLKVLMVTPLWVAIDLMLFSIKIKVNYHNPYILKLKNYFSTKKGLFTLWVLTIICWLPYL
VIFFPGIYGYDGPFQVQQFLTHKITTHHPFLHTALLGITVGKLGGDSKWWLGLFIYSCIQLLIFSFSLSYLVNYISKHTK
SFCLPIITLLTFLFVPFYPIMAITTTKNVIFSALFIILEIQLLSFYNKISRKQELLFLIVSFLAMAFLKQSLYVYIISVI
ILAFLLRNNRKKLITLSIISVAFFAVFNGPILSMLNVVNSNSDTFKEALSLPECQISRAVVRHPKVYSAEIDKVKKYLPD
YQKYEPLESISDPVKSTFNSKLVKDKPIEFLKLYWQIGKKEPQEYINAFCKLSVRLWDPDMNEDTYLYEPYWETEGLAKL
PGQKEGQRVSKIQREIQNFSNNRDYEKIPVLSLLFSAGLPFFIMLIGIASAWQDRDRKNLMLYVMPFIFWIFLLIFSPVI
LLRYVLPLISMEGLLLMPILNKMFFISYNKKYS
>SEQF1778_EEI66108.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKLAVLIPCYNEGKTIEKVVTDCKKAIANIPNSEVYVYDNNSTDNTGELAHKAGAIVRHEYMQGKGNVIRRMFREIDAE
CYIMIDGDDTYPAEEIPKMANYILTKKYDMVVGDRLSSSYFEENKRPFHGIGNKLVRGSINFFFKNDIRDIMTGYRAFSF
EFVKSYPVLSRGFEIETEMSIFATVNNLAVKNYIIEYRDRPAGSESKLNTYSDGFKVLRLIFTLYRNYKPFNFYGLLALL
LVILSLGFFIPNVWLPYEATGKVANMPTLIVCGFCIIAGIISFYSGLILDSIQRKERREFEFRLQELHFEKQREKNNYG
>SEQF1778_EEI66109.1 hypothetical protein HMPREF0534_0563 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDKIKKYKKLELWIFAVLGMGVIYPTPISNDRFGQPFLNVLINSLLVLTLFYFIEVRHLVKIRFIDYFFGLIFSILYNF
TSLFIADEKPYTIMGTYYLHGIGNILITILAILGWTITFAGALALCSFGCQKYSNYSEKAFFKFKSVFLVILISWSLVIV
FFLPGQVSWDALKQFCEFEGKRVANLEFTYIPTNHNPWFVTLIIGNIFNVGNKLLNPNFGVFLVILFQTLISAFIYTKVV
QFVGQKSGKIMGIISLVIFASPIFSSYAVTIDKSTLYYAFCAAFYLCYVKIIVGVKNKHKALHTNDYLLYLLTMLLFSQF
RNDALYISIISTLILLVFLVYKHMNITRLLFVLLAFVAIICSWKAYMQKNNIISGASSEALTIPTRQISYVYLNSPSDLT
KKDKQIINKITPLNEIKKNYDINSGDNLKNLFPVNTFLNNPSIIKDVVHGEKKIRSNLKIKNDLRNYLKVWLKMGIKHPF
TYIKVYIAANSFYLNPFVCSPNLYGSLFINFPTRVPYYVEPSWVDKYNYLFKDSVRLKAREFIGLILSFPLIAFFLNTAT
ATWLLIYLLYRSIKIKSLDLFIILVPLIGLVALSTLVPINGYSRYVIGEIAIVLIAFACMFSAERINIKK
>SEQF1778_EEI66110.1 hypothetical protein HMPREF0534_0564 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKSKKYYFMYLNAIASSFAVVVLHTVTNPAQFGIQTSRPSFYLILCIILGIIFSYGVPIFFMQSGANILNYRDRYNTKT
FFIKRFNKVVIPFITWSIIGFFFIFGKNNGSLTIKAFIKNFLLGDIVGPYWFFYNITGFYLCAPFVSLIIKYGSKKIIKY
TLLILIVTNTVIPIVNILIKTQSLFGSSFPFVGSYAQYFIAGWYLTHNDLSERRYKQIYLLGIVMLIFEIITTIYFTFYI
KQIPMLNYPGGIVKTFSDIAMIPSFCIMCAFFLFFKQRECWLETLSAKTLLAKGASLTFGIYLIHPFLVTYLLDPFNKFL
VAFPLIIRIIVDPLVIYFASGIITLYIRKIKYLKWLMP
>SEQF1778_EEI66111.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKKVTAVVVTYNRKTLLKECFKSLLAQTYKNLDILVIDNASTDGTEDFVKKIDNSRVSYVNTGENLGGAGGFQFGVKAS
TKLKPDYLWLMDDDSIPTPNALEKLMEVAENIGEFGFLASKVLWKDKSMCNMNVPKVTLNRKLQDFDGNPKKIIMGTFVS
FFVPMKVVKEVGLPIKEFFIWADDFEYSRRISRQYPAYFVPESVVIHKCKSNNGSNIVNDSPDRFKRYEFAYRNEVYVYR
REGISGWVHLGLKTILHLTKVIMKSKDNKKRRIQIIWNATKKGFSFKPTIEYLRTDDGEN
>SEQF1778_EEI66112.1 hypothetical protein HMPREF0534_0566 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASLIKLWGAIMSKDSPLFSIITIVNKEKVYEDFKRSLESQKEVNYELVKIDNTHNQFFSAREAYNDAIKKAQGDYLVFS
HPDMRFLDQYALRDFLNQVIRIRNLGIAGVSGCLFELHHHKSTLVTSIVHGDPAHHFGQLIQETTKVQTVDECLFVMTKD
FYKQHPFSDIKGWHMYAVEQCLMALLNHKMNYVIPARMWHYSTGFSENWQYIQTGREIVRRYGKQFSSINTTITTWNTKS
KINLLIVPPVKLLKHKIWRKFNLAK
>SEQF1778_EEI66113.1 glycosyltransferase, group 2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEEKSMSNENVAILMSTYNGEKYLEEQVKSIISQDYTDWHLYIRDDGSTDNTVSLIKKITRDNEKITFLNENKPKNLGV
TGSFMDLLANTKAQYYMFSDQDDYWMEDKISATLKKMQASEIGDMPICVHSNLTVVDTNLHGDSLMNSSEEHWSDFKSML
FANCVTGCTMMINQELKNLIDFDKVKSNKLYVHDWWIALVAAAFGKVVYLDRSTILYRQHQGNVIGSNKKTTLFNKNEPF
NGRVIRMVKITSDFWQAYGSKLTGQNKNYVKNYASLVRHRNPLWNLRIVLKYPPARATTTGNLVFAGIVIRDYQKLSRLG
>SEQF1778_EEI66114.1 chain length determinant protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKSKKITIGNFNQIIIRNIVIILVLTLIGALSAGLYARHKRITFFTAESSVILNIKVTQTDYKNAAMMAEKGMMHSYEE
ILNNQETMKKAGKYLPANLRKNYSDGQLASAVSINSAPDSLVLKITARTTQENDSVKIANAVAEAAQAQLPKYSPNNSNV
RILTRATQDNVSAKTTPSVKKYVVLGAALGLLVGMIFSFSITTWKSI
>SEQF1778_EEI66115.1 hypothetical protein HMPREF0534_0569 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITFSRDKLRWFNDKTISGEQLFFAAFALSLIASFVFNTTFMDYLNVNYVNLVNYLAFALLIVKIYIFDNFKWYEYIGIT
VILGLAFLSWRKTQLSNVMIMFSFIFAAKGINFNKIVQQYFNINLMLMLLTVLYSLAGIIKNLAFFRGTTFRYSLGTDYP
TDFSAHIFYLCLAYCYLNYKKMGWHQWLGILAIDYLTYLVTDTRVDALLMILMILVMLSVSRKLNTKLKKFIASSYWYLS
IILPYGYVLITCYFTFSNPAMVKLDQALSGRLALGKEGFDKYGITLLGKRVIERGWGGSDGLHMMKNNPGKYFFIDSSFV
RLLVINGLILGIIALLILVGISLRETVKHEYLLPAILFLVVSSSLIDQHMLEITYNPFMLAFLSCVPQTISGGLKNGKVK
ENNDW
>SEQF1778_EEI66116.1 hypothetical protein HMPREF0534_0570 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQYLISAIDPIKNSGGNKAKKDIDFFASQLNDTRVIHVKIYYTRLQRYLLTRLSIIKLVKTHPADRYILQFPISTPYVLR
QFIEVIQKYTNAKVDLFIHDLPALQLSMDDKERELVLFNQVDNLIVHNQAMKKWLVDNGVQTNMIELGLFDYDNEQPMQK
KQEYDPANFTICFPGNLAKSTFLTKVNLSHQLNIYGPNKLDSYPESIRYCGQYTPEELPKHLTEDFGLIWDGNSIETCSG
TFGEYLKYNNPHKTSLYLSTGIPVIIWDQAALAPLIKESGVGICISSLTELDSVLLSLTNEQYQLMKRKAEKLGQKLRKG
YYTKHALTKLNMDE
>SEQF1778_EEI66117.1 polysaccharide biosynthesis protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVIKNYLYNVVYQVLVLLVPLITVPYISRVLGPDLVGINSYTNSWMIFFMLVGQMGIALYGNREVAYHRDNVVDRSKIF
WGIETLQGITILLALIAYLAAVLLFSTTFKQFFLLQSFWIIAAGLDVSWYFMGMENFQRIVFRNMLVKLASVALIFLLVK
NQGDLGKYIALLGLSNLVGNLTLWPYLKDEIKWVPISTWHPFKHFYPALLLFIPTITTQVYLVVNRLMLGRMSTQNQLGQ
FQNTDQIIKVVLAVATASGQVMLPHIANKFSKGDVKGIRESLYNSFDFITAIAVPMSFGIMAIAKPFAPWFLGRQYDEAG
TLMMFEAPVILFIAWSNVTGTQYLMPINRTKEYTVSVTLGAVINIIANLFLIALWGAKGATLATDISEFSVTAVQLYYIK
NTISRRKLFGNLWKYILSGAIMFIVVYRLALIINMTVVNLIVEVVVGIIVYLLGIILLKAPIVNQAIKLIQKRRFEKR
>SEQF1778_EEI66118.1 UDP-galactopyranose mutase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MERTMKKYDYLVVGAGLFGATFAYEAAKRGKRVKVIEKRDHIAGNIYTKEIDGIQVHQYGAHIFHTSNKEVWDYVNRFAE
FNRYTNSPVANYKGEMYNLPFNMNTFSQMWGVRTPAEAMAKINEQRQEMAGKEPQNLEEQAISLIGRDIYEKLIKGYTEK
QWGQKATELPAFIIRRLPVRLVYDNNYFNDTYQGIPVGGYTQIVEKMLDSDLIDVETGVDFFDKKDEYLKNYPKIVFTGM
IDQFFDYQLGELQYRSLHFETEEKNVGNYQGNAVINYTDAETPYTRIIEHKHFEFGKGDKDKTVITREYPADWHRGDEPY
YPINNQRNNELYKQYAKLASEKANNVIFGGRLGQYRYYNMDQVLHAALTAVNKEFD
>SEQF1778_EEI66119.1 hypothetical protein HMPREF0534_0573 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIKRLLLSSSVLLMTTLGLAGCASSTNKSASSDSSSKEMTSKVTESRKSSAKAKDSTKSSSKKNAASSKVSDDDVAKID
SNSSSNTTSQNANSSKATSSSQSSATSTTKSSTSSQQSSSNKANQSSEIQLGLSDVAVWTDENGVTHHVDSDGMDRQTTS
GSDQITYNDWSGSLPSNAKVVQAH
>SEQF1778_EEI66120.1 hypothetical protein HMPREF0534_0574, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
QNYSDQYSQDYPTNAGNFDNIHVTASQVTLSGWHASSQTANKPYEWLIVLDNNGQELYRQEITDKGLGRNDVQNVYPYIE
GANKSGFQIVIPTQENMLHKVVKIINRLTDDPAGNGNYIDIVSGPVSILSGAQTEGRKTTTYNDNGQIVAVYNDAEVISQ
LPELPTGCEITAVTMMLRYAGYDVNKVQLANIMPRSNNGDYGFVGNPFSPSGWWIFPTGIAPVVNRFVGHHEIMTGASMQ
RIQDKLKQGHLVVAWVANVNGFVNHALALTGYDASRLFYNNPWTGRKESMTYGEFYQHWNADKQRAISY
>SEQF1778_EEI66121.1 hypothetical protein HMPREF0534_0554, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
YFPILIPLKQPQQLTPLRTNFYHLCIIYSVSLFPLLSPYKLEISLLKIPQK
>SEQF1778_EEI66122.1 dTDP-4-dehydrorhamnose reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKILITGANGQLGSELRNLLDKRGVAYDAFDSNQMDITDQAVVNEKISALKPEVIYHCAAYTAVDNAEDVAKDLNWQVN
ADGTRNVAEAAKSVGAKMVYISTDYVFDGTNEGEYEVDAPTNPRNEYGKAKLAGEKAIQETLVDYYIIRTSWVFGKYGKN
FVYTMLRLAKDHDQLTVVNDQFGRPTWTRTLAEFMTYLVDHDQPFGTYQLSNENSCSWYEFATEILKDKDVEVAPVDSSA
YPAKAYRPRHSVMSLKKAEDTGFEIVNWQTALNKFMEII
>SEQF1778_EEI66123.1 hypothetical protein HMPREF0534_0556, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
LYGSGKNVRDWIHTNDHSRAVWDILTKGKIGETYLIGADGEKNNKEVLEMILELMGQPKDAYDHVKDRPGHDLRYAIDAT
KLRTELGWEPEFTDFKTGLQHTIDWYTEHQDWWKDEKAAVEAKYAKNGQ
>SEQF1778_EEI66124.1 hypothetical protein HMPREF0534_0552 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKQKFYHWLFWPLLLLTVATLIWMCTKIQFIFQPFLTFVSVVFVPLIISGFLYYMLNPVLKLFMKIKIGRFHMNRGIAS
LLIVLLLIVILVGGIAMLIPPVVKEISTLVRNMPQTVTGIQHLINDTIEHSFLQNVDLNAYYRQFDHQLAGYAQKVLQGL
STRVGDIIGMLTNVTVVTITVPVMLFYMLKDGSKLIPSIQKWLSPHHAKEVNDLLGKMNSTLSSYISGQMIECLFVGVFT
SIGYVIIGQPLAIVLGIVAGLTNIIPYIGPYIGIAPALFVALTMAPNKIIWVIVVVIVVQQVDGNIVYPNIIGKTLQIHP
LTIIMLLLAAGHIAGIGGMILCIPFYAVIKTVCEYFFDIYRIEHPVDKTKTE
>SEQF1778_EEI66125.1 N-acetylmuramoyl-L-alanine amidase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
KDFSDQYSQNYPTNAGNFDNIHVTASQVNLSGWHASTQAGNKPYEWLIVLDNNGQELYRQEITDKGLGRNDVQNVYPYIE
GANKSGFQVTMNIPTKMQGHLVRFVHRLTDDKDGNGNFIDLSSNPVLVNLEYNLNANGINRYILNNHINHATITVNHVIP
SDTTDVYSETEDGKPNMVVVHETANPNDSIWGEINYEKAHYNNAFVHAFVDGDQIIEISPTDHEAWGAAYPANGRAVQFE
QVEVYGANNFARELVNAAYYTAYKMNEYGMVPSLAQVNGTGTLWSHHNVTQYIANGKTDHTDPDGYWANRASRYFGTSYT
MKDFFELVKYEYSHL
>SEQF1778_EEI66126.1 cell envelope-like function transcriptional attenuator common domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNNNNNESREHYRKRMEERIQRDVNERKRREREEAHNRRENRLRREEEQSSPDYQPPKKHHYRTPNWVRTLIGLLICLV
VAGGFYEYHKVHSVAKGVFGAGDGKISKKLQKGEPVSVLAMGTDVGALDRGNKGGNTDSLELFTINPKKKTITMTSIPRD
ILVRVETSDGPDYVKINAAYSINGPKQTVKQVSELLDVPIDYYAVINMGVLEKVVNSVGGVEVDNPFAFDYEGHHFKKGK
QHLNGANALKYSRMRYDDPNNDYGRQKRQQQILKSVINKFKASGSIGAANKILDAVGDGVKTNIPIDDIATLYGNYHGAM
NNVKTYHFQGQNATIEGVSFQIASPKEINRVSKLVRAQLGLKAKNIVNHETKMYKSQPHYNGYNETDFILPGGASYNDPG
SGNGSDEVIGSSRSSRRSTNETESSSTYTAGNNESYSESRAVPTTGNQTPTAPIQHHYSTPQYHTYNGYHSTYTHPTYGN
HYGYTHRYY
>SEQF1778_EEI66127.1 KxYKxGKxW signal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKEHKKLYKAGKNWLTATIAVTTVTFMGVQTAHADTSAENSTSAQVVSTNDSGVAHTPSEGNSHENDGIIATPTPASAE
ENSVQTGSSTTVNDQQTSPQVDSNIYGTVNVKDWDYENNSDIVNLTGYHGQDTRHIVVPNLNDFNDAGIEIGQTTSVGIS
STLTKNLVSQSIAFAISKTSGEYNNKVIATDNDWSSVFASSGLVNADLSNLDTSNITNMKYLFAYNKGLKTVGILSEWDT
GHVSDMASMFYETSALQSAGNIGKWNTRNVTSMNMMFTESDVSTKTIGHWNTSKVVDMGYMFHSYKGEWGDLSNWDVSNV
KMMVEMFVSSDRLGELSNPGNITKWKIKNGANLERMFSFDRSTSFYRVVASNENGIIPNQVTIKDNSGNVLAIINTPTIY
YTNKSVKSAVDEIVQAEVDQLNKSAKISYGIPKIASSEDDDYSIANAVYVVGNEQILNISYRDGMQLVSQETLKGLTGET
IKLTSRLHLPAGYQINHFFPPKENYTFKAGGDSITVDLEHIVSHFDDKTPTYQLPSGITPADFQKQVKRTITINRPHKEP
EIYVQTVNLIRQGDYDQVTKQITYSDWSTGTFKSYTAPIISGYVATEPVINSLEVNYNTENQYVVVNYIADSQTGSINYV
DQDGKVIKTDTISGNVGDTINLNISLPDGYEIDDSDTDLPTTVTVTASGIPTITINVKHEIISIDQWNIPEGYDKSQFSK
EITRTIVINAPQQKPKDIVQSVRIYRNATLDKVTKKVTFGDWRTSEFRAVNIPSVPGYKPDQNVIPLEKVDSDTKNSKVE
INYTPLEQTVTVYYFGMVMGPIKTDYISGKTGQTIEYQVKLPQGYKLASSQSAKVSYTFTGYDHQSMSIYIEPIIMHLDS
TIPANKLPDNFKLSDFSKTITRTITLEMPNGKPQEVKQEVTLTRAADYNEGTKEANYTNWTTGKFNLYKAPVIQGYIATQ
PVVNSMQIDHDTDDQFVVINYIANRQYGHINYIDEDGKVIKTDTVSGVVGTSIPVKIVIPDGYELANKDEQLPTTIKIDN
DQLQDLTIKVKKIASPSQSADNQVPQDHTTQNNQLNFNQGWLDNYGLTQTKDGQSQIKASGWHVAGQSNQDSYRYMIVYD
NTLGHEVARQKLTPVVRNDVRRAYSNVNNSNYSGFDMTIDIPTSTINHSLSLVARYSNDAVNGEGQHVDYWFGPLKMDDS
NQGYLDSIKSDGKTVTVSGWHATNQSANRPYHYIIAFDQTLGHEIARQKVESVQRPDVAKVYGKIANAINSGYSTKFNLT
SQYFNDNIQFLSRWTDDPNGNGNSVDYWFNPVNRINRANLDSVDLSSGELKVAGWHATDMSEFEPNHFLIVFDNTTGQQV
ASQKVELESSVDVAKVYSDTRTANHSRFNFNFGALNLQPGHNYSLVSRYSTDGNGNGNDGAHTDSWLNMGIFSQKAHNLD
STVLNGNTLTFQGWMADDQATIKQYPYAILLQNGKEIARQQLDLTTRPDVAKVYPRLYQSKKSGFNASFKLPTVSLDNLQ
LVLRYTDSKDGNGNPSDTWININHGMIKKI
>SEQF1778_EEI66128.1 KxYKxGKxW signal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENKKHFKLYKSGKKWIVATITTIAISTGVVFSENVLADTQQPQSTGQVQKINNPTNDQTYDHQDKGNYGYLDQANFNDD
QLQVTGWQATNQSLDEQNRFVIAYDSTTNKELGRSKIINNVTRPDVAKVHNVYNAANSGYNSNIKLNTKNMQDENDSIQV
VSRYSNTQTGERQHTDWWSQPIAIDKSNYGSLDQFQVQNGQLSVAGWHATNGSINRDHHFLILFDQTADHEISRQEVKKV
ARPDVIRVYPNIMNADNSGFKAIFNVANLDPNHQYQILSRYSNAANGEGSYVTEWFAPRRIASVNRVNEGWLDSFNISEP
GQLTVAGWHASDLSNVASNRFIIIFDRTANRQVASMKINGIARPDVAKAYPHVLNAENAGFNVTFNLNSLQPGHQYSVVS
RYSADPNGNGNDGQHIDFWSSPVTLNQTASYVDQVKMTDQGLHVQGWMASDNSLVQQNPYLIVLFNGKEITRQKLSLTGR
PDVGRVYPEMYGSAKSGFSTDIKLSTDQLNKLVNGNLQILLRFSTATDGNPYPNQGVTDQLSSNYSTNMGNANISLNGNN
INIKGWHEAIGENSRPYQYLIVVGLDGHEFYRVKLDNTNSNLNSSNTSWLNNNKSSFAATLPVSAAMNHRGIKVIHRYTD
DANGNGNYLDFWSPQIDINDGFQSLNGGTVYYDPVSGQLATGWRTINGNRYYFSDGYECQPDPDDLWVYNDQLHGQMYTG
INWVDGHCYNFGNDGIARALPQNDGWSWPFPQSGEGWHYQGQKFGYTSNIRKNGYHDGLDFGTQDHPGSAVHAVHGGRVL
DVNTVRDNNGQTMWWFTTIWDGRFLYVYQEAFSNRNKITVKPNDIIYAGQVIGYRDKDHLHLGINTSPNYGVDLKNSFVP
SWSDSSKATGHGEWIDPEWAIMNRI
>SEQF1778_EEI66129.1 KxYKxGKxW signal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQSKSHYKLFKAGKNWCTMMITLVAVAAGVSVASGTVHADTATASTQTPTVAVTNESVDKGAQPSDVKAPNLATDKQQGT
DIDFQTPVNAGYIDTVTADTDNANTIDVSGWHATNQYKTGMDHYLIALNGDNNQELYRGKVETVSRPDVQKVYPKAPISE
NGGFKASIPVDRLNNVSSVRFVSRYTNDTNGEINGGADFWYPTIQTKAGYLDNFKVNGNNIEVSGWHADDQSVNKSNHFL
ILFDKTKNKEITRQAVKTLASSDVARNGYNEIVNADHSRFSANFTITPAMLGDELTIVSRYSSDAKNGEENRSDYWFNNS
LKLGKDKNAGYLDQFRIDNKSNKVIVSGWNANDQSTILTNHYLILFDKTANHEVARQAVKTLASADVAQNGFADVNNADH
ARFTTSFDITPAMVGHQFVLVSRYTDDAKNGEGNHIDYWYNNNVNLNNNQAWLDHFTQNGTTISASGWHAADASMIDSHH
FIILWDLSKGREIARKEVTNVASPDINNVYGNILGANNARFTVDFNIDGQYAHDAMQLVSRYSNADNGEGNYSQAWLTNQ
YLNLYQNPSWMYQINYSQIQPSGPVGHNIGPGYEGIKTQLVKDRIGTGYQHNTYTTADAYRVMSVQRAHGLPATGWVDYN
TWVALGLPADQWTSIDSYVAPLGAGAGASRQDHIEAMIRQAYQYMGKPWLAGCSSSPAYGVDCSGLVMQALYAGGINPTS
CSSIYHGFPGNEWNSRNLFADPHFMNVSYNDRQRGDLVFYYQPGTHTIWHVAIYLGNNQVIESWPPRVMVQPIVNGQRNV
IAGIRRVFA
>SEQF1778_EEI66130.1 peptide chain release factor 3 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSPKELAEAVNKRRTFAIISHPDAGKTTITEQLLLFGGVVREAGTVKARKTGNFAKSDWMEIEKKRGISVTSSVMQFDFQ
GKRINILDTPGHEDFSEDTYRTLMAVDSAVMVIDSAKGIEPQTKKLFQICKMRGIPIFTFMNKFDRDAREPLDLLNEVED
VLGIETYPINWPIGSGHQFKGIYDRFNHRVALTHPADENNPYLPLDEDGNVKGDNPLAVDGEWQDAMDGMELVEVAGNEL
NREKIAKGDQTPVFFGSALTNFGVQTFLETYLQFAPAPSDHKTEDGDVVKPLDPEFSGFVFKIQANMNPRHRDRIAFVRI
CSGEFDRGMDVTLSRTKKPMRLSNVTEFMADTRENVETAVAGDIIGLYDTGNFQIGDSIYNGKKDIQFEKLPQFTPELFV
RVSAKNVMKQKSFHKGINQLVQEGAVQLYRSYSTGDYILGAVGQLQFEVFRFRMQNEYNSEVVMEPMGTKTARWIDPDQL
DEKMSSSRNILVKDIHDQPLFLFENQFAENWFKQKYPDVKLTAKL
>SEQF1778_EEI66131.1 IS66 family element, Orf2 protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
LFVMLVNWHDPDYIYLVCGKTDMRKGIDGLAMVIAENYGLELYNNSLFLFCGGRNDRFKGLFWDGEGFIMLYKRFENGHL
SWPRNSNEAKELS
>SEQF1778_EEI66132.1 response regulator receiver domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSRILIIEDEENLANFVELELKHEGYDTDVELDGRAGLEAALNQDFDVILLDLMLPELNGIEVARRVRELKDTPIIIMTA
RDSVIDRVSGLDHGADDYIVKPFAIEELLARVRALLRRISIEDGNNKEHQTTVNYKDLTIEKENRVVRRGDEVINLTKRE
YELLLILMENINVVMSRKDLLSKVWGYDSKVETNVVDVYIRYLRNKIDRPGEKSYIQTVRGTGYVIRS
>SEQF1778_EEI66133.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRKDERRFVSLKIKWAAGTALGSLIIFCIVAMALFSAFTQNLFHQERQLLNQGMTNISTQLSTVDKPLTKKNVSHLIDP
DRNRSNIISGEEYKRPVIKELSDGHLVINIYNPDGKNILSTGRYIKKPQFTTNRNIHIAAGPDHDVLVGQMPIYGQNNRQ
LIGYLQVENNLDAYMQSYHQLALVCILALCLVVIASGLLGYFLSFFLLRPLDGIHDTVKEISADPTKDVRVPTTNRKDEL
AELITMFNEMLDRMQRYIDQQSQFVSDVSHELRTPVAIIQGHLEMLQRWGKDDPKVLDDSIKATLIETRRMKNLVQEMLD
LSRAEQVEINFRNQHTIVNDVVHQVYNNFKMLYPDFTFRLDDDLKEPIMVDIYRDHLEQVLVILCDNAVKYSTDDHKEIH
IILSRGMNTVEIGIQDFGEGISPENVKRVFDRFYRVDKARSRKKGGNGLGLSIAKRLIEGYHGSITLESSVGAGSLFRII
LPIIEDPETKK
>SEQF1778_EEI66134.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAAKEQKKLITTPTLVLMIISTIYGFGNVSIAYDQMAYAGMFWYILAGVCFFFPCCLMMAEYGSAFKDAKGGIYSWLAGS
IGERLAFIGTFIWLASWVLWLVSSASRLWITLSALLFGHDTTQQWHFWIFNSNQLIGILAILFVLLVTLLSSQGINGITK
VSSFGGAFMIGMNAIFIIASLVTIIANKGVTAQPIHGTSSFIESPNPAFKTPIAIISFVVYAIFAYGGMENLGGVTDSMK
NPAKTFPRGLVIGSLLTIGSYVLMILMTGFSVNYNHVIAKSSVNLGNVTYVVFNQLGYQLGVSLGLSHATNIFLGVLFTR
MIALAGLMGMLGAMFLLVYSPIKSFIMGANPELWPKKIVTLNKHGMPAYAMWIQAIFVSCIIFLVAFGGSAATSFYQILT
DMVNVSTCAPYIFLVGAFPFFQKKDIPHDFVVFKNHFWTNVLVVFVEIIVCLGIIFTCIQPIIEHDFQTAFWTAFGPVFF
GIVAWIFYNHASKKITK
>SEQF1778_EEI66135.1 MATE efflux family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLKQASNREDGSKFCGGFNMDLPMSITKEVRHYVVRNVVATLGMSMYVIIDTLFISIAAGALGLTTLNLVLPLFNVFNG
TGLLLGVGGATIFSLNKVMHPERIKSLFSQLMIFAFTFGLILAILLNIFATPVVNFLGADDATRQMAIIYLRIISWSGPL
YMANYIAINFIRNDGNPTLTMKATLTETLSVILIDWFFIFGMGLKLEGAALAVLFSPAISLMVLSFHRKFAGRQLQWHWF
VPHLRNIWRSARLGVASALNELSTGVSIYFFNHVLLQLANNYAVAAYGVISNIAIVVLAIANGVALGVQPLASREFGKHE
YKNVSMTLKNGIIITLFLATISFIILITFKHPIIEVFNTSHSGQLLAYASVGLPIYFTSVFFSALNLLFILFLTAIGSAR
ASFSLSILRGYIILLPAIFILAKVAGINGVWAAVPFTEFVITCIGGIIIYQRLKKLNKE
>SEQF1778_EEI66136.1 peptide deformylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKPIIKDQQLLAKKATLTTKADLPLANDLIDTLNAHQAECVGMAANMIGVNKNAIIARIGPFNVLMFNPQIVAKSHPYQ
TTEGCLSLSGTRPTKRYKQITVKFRNQSWQVQTLELTDFAAEIIQHEIDHCNGIII
>SEQF1778_EEI66137.1 membrane protein insertase, YidC/Oxa1 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRKRITIAGGLFTLLLLLSGCVRTTKSGRPYGFVYDYMAKPMQHLMEWLASHMGNNYGWAIIVIVVVVRTILLPVMFSQ
MKKSTIMQEKMSKVQPLIKELTEKQKAAKTPEEQAAVSQQMMALYRDNNISLTGGIGCLPLLIQLPIFAALYAAIRYSPD
LYHATFFGIPLGKPSIILAVLSFIAYAAQSYLGLVGVPEAQKKQMKAAIWMSPFMTFFISITSSAGLGLYFFIGGLFAIL
QTLMVNAYRPRIRRQIEEESKKNPIKMPEAPVINTPSSSTKPTDAIDQLRKGDAKPSDQANRNHQRNAGKQQHHKK
>SEQF1778_EEI66138.1 acylphosphatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVNYHLTITGRVQGVGFRWNVYQLAQQAGIEGIVMNKHDGSVYCELQGPIEIVKQLISKIKAGPTPYARINKVKIIEGSL
QNYHHSFQITH
>SEQF1778_EEI66139.1 RNA methyltransferase, TrmH family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEQLTSIHNQHVKDWKKLQTKKARRQTGTYLLDGWHLVQEASKAGIELLEVVGTTEQLAAHPELEGMANATYEVTEEIMK
HITDTVTPQGIAAVVALPDSHRLPAGPLHGAWLFLDRVQDPGNVGTMVRTADAAGFTGVVVGQRSADLFGPKVVRSMQGS
QFHLQMFEGDLRKWIDDFKSINAPTYGTQLNPQAKNFRTVDPGDTFALIMGNEGQGMSDDLLSQTTDNLYIPMRGEAESL
NVAISAGILMFQLNQNLD
>SEQF1778_EEI66140.1 HD domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSKNEWRTDKEYVSIVADLLAQPAVQKLANYTQHHHSTRLQHSIAVSYDSYKIAKKMHLDYRSTARAGLLHDLFYYDWR
TTKFNLGTHAFIHPRVALRNAEKLTPLNKKEKDIILKHMFGATLAVPRYPESLIVSLVDDFEAEHEFFGPLRAKMRRKIK
KRRMRTTW
>SEQF1778_EEI66141.1 transcriptional regulator, HxlR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEQLVAEKALDEDCKLCPKFTRTFMILGKKWNGLIIEVLLKNGNMRFKDIASSIAKCSDRVLCERLKELEDEQIVIRNTY
EGSSRVDYSLTERGQELRPVMEAVHAWSDKWI
>SEQF1778_EEI66142.1 phenylalanine--tRNA ligase, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLREKLAELREEGLQDIKQSEDLKRINEIRVKMLGKKGPITSVLRGMRDLSAEERPKVGQFANKVRDELAAAIEEKRAE
LEQAAMNAKLAAQTIDVTLPGTPVAQGQPHVIQQIIDQVVDLFVSMGYEVAVGDEVEQEVYNFEKLNLPKDHPARDMQDT
FYVTPSVLMRTQTSPMQARMLEKHDFSQGPLKMISPGKVYRRDTDDATHSHQFHQIEGMVVGKNITMADLKGTLEAVAQN
LFGDKLEVRLRPSYFPFTEPSVEADITCFNCLGKGCAICKQTGWIEVLGAGMVHPNVLKMSGVDPEEYGGFAFGLGPDRF
AMLKYGVDDIRNFYQNDVRFLNQFDQKG
>SEQF1778_EEI66143.1 phenylalanine--tRNA ligase, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVSYQWLQEYLDLDVAPQDLAEKIARTSVDINDVYSLSDGLKKIVVGEVVKCENHPDSDHLHVCQVDVGEEEPIQIVCG
APNVQEGKKVIVALHGARIADNQKIKRGKIRGVESNGMLCALQEIGFSDKIAPKDYEDGIYFLPDDAKNGDPVFKYLGMD
DTIIDTDVTPNRGDMLSIYGNVNDIAAFYGLKSHFKEVAIKEEGAEKTADLLQAEIADTKIAPTYKLRVIKGVKIAESPL
WLQIRLWNSGIRPVNNVVDVTNYILLKYGQPLHSYDYDQLSGNNFGVRHANEGEKFVTLDGDEQTLKANDIVVTVDDQPV
ALAGTMGGEGTAVSDDTTTVALEAAIFDPVMVRKQARRLDLHSESSMRFERGINPATVETALNEAAEMIKELAGGTITAG
IVTGNEAPAVDTPIKLSLAKINHVLGTSLTMEQVTDIFDRLAFAYTVDDDDQLTVIAPARRWDISLAADLYEEIARIYGY
DNLPSTLPTMTRNRGGLTPRQRFIRASRHDLEGMGLTQAISYSLTTVEKAKQFQIKPLAEPMKLDFPMSSDHVATRMNIV
SGLLNDIAYNVARNVDNVALYEEGRIFLPMGDERPVEQEHLAAAVTGQMVANSWNKKDQQVDFFQLKGIVERYLKNMGIA
GKITYVPTSDRPEMHPGRTADIMVDDQLVGFIGQVHPQTAKEYKIPETYVFELNLELLLAAPKIENEYTPISKYPSITRD
IALLVDDDVENATIVEVIKQKGGAYLKDIHLFDVYAGSHLPAGKKSLAYTLTYQDDKGTLTEDQVNTAFDKVTAYLQDKV
DAEIR
>SEQF1778_EEI66144.1 NlpC/P60 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSTTKKILASSLGVAGAMAMGTVTAKADTTVTVNVGDSLNGIAQKYNVSADDIATANHLQNKELIFVGQKLTIPTKDKN
ETPANNAEKKDQASKNSQSLQDSVNKAMSYLGTPYVWGGNKPGGFDCSGLVQYCYGIPQRTTYEQQALGPHIHDNVLNAP
YGALVFYGSDDAPYHVAISLGDGRIIQAPNENETVKITDQQYFPGNYYVVMH
>SEQF1778_EEI66145.1 uridine kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIQQNKRPVVIGVTGGSGSGKTTVSNKIYDQLHGQAIQIINQDTYYNDQSDMTMDERKAVNYDHPLAFDTDFLIKQLTD
LRSNKAIEMPVYDYAQYTRSAQTVHVEPTDVIILEGILILDDERLRDLMDIKVYVDTDDDIRIIRRIQRDMVERGRSLDS
IITQYLATVKPMYHQFVEPTKRYADIIVPEGGENQVAIDLLSTKIRDILVKRGHTELQ
>SEQF1778_EEI66146.1 prokaryotic transcription elongation factor, GreA/GreB domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEEKTFPMTLEGKKKLEDELEEYRLKRRPEVIKRIKIARSYGDLSENSEYESAKDEQAMVESRIAQIENMLQYAEIIDN
EDVDKDEVSMGRTITIQELPDEEPEEYQIVGESESDPFNGKISNESPMAKGLLGHKVGEVVEVEVPNGTIKLKIVKVD
>SEQF1778_EEI66147.1 hypothetical protein HMPREF0534_0511, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNIRCEMKFMDKLINYQKPAEARLFALLLTFSGGFIDAFTYIKCGRTMAAAQTGNIIFLSAALANHNFLGVVDRLGSLI
AFIVGLAMVSILHAHLKTDYWRVVCLLPILLVGAIIGFLPDSFPDYLMVPAVSFGLAMQSAAFSKIEGLGYNSVFTSGSV
KKAAVAWSEYYFHHDRSQRSVAFSYLMIVICFTLGAIISAQLLPFFRMKTIWIATFLILVTDSSYYLTKR
>SEQF1778_EEI66148.1 DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKQLLLIDGNSIVFRAFFAMHNQMDKFTNKDGLHTAAIYGFKLMLDHVLQNFKPDTALVAFDAGKVTFRTKMYDDYKGG
RNKTPNELTEQIPYVRELIKDSGLHSYELANYEADDIIGTLAKQADDAGYKTLIVTGDRDLTQLASENTTVAVTHKGVTD
TEHYTPAHVEEKLGITPRQIIDMKALMGDSSDNYPGVTKIGEKTAIKLVKQFGSVEELYDHIDDLKKSKMKEHLIEDEEI
ARQCKTLATILRDAPLKIGLDDLQYQGPQTDDLIKFYKEMGFKSFLKKMDIDGAGEEDEAEIAPIDYTVLTKDNLDELGQ
LTGEVSFYLEMPAENYHTSPFAGFVIGNEGHWFTSRDVDLLKEAPLKDLLQSDSVKKNVFNAKAQIVGLHRLGIPLENIN
FDLLLASYLLNTNDNSNDLGQVAQEHGYDDVRTDEEVYGKGAKRAVPDDDETFFSHLATKARAIEHLRKDFFAKLDENKQ
TPLYTDIELPLTRVLAKMEIAGVHVDAQTLKDMGSKLTERLSEIESQIYQEAGEEFNINSTKQLGHILFEKLKLPVIKKT
KTGYSTAVDVLEKLADKSPIVEQILEYRQIAKLQSTYITGLLKVIHSNDQKIHTRYLQTLTQTGRLSSVDPNLQNIPVRL
PEGRLIRKAFVPSHEGWQIFSSDYSQVELRVLAHITGDKNLQEDFKNGEDIHASTARRIFHLAPDAEIDRNMRRRAKAVN
FGIVYGISDYGLAQRIHVSRAEAHEFIQNYFHEFPGVKKYINDTIAFAKENGYVETITHRRRYLPDIHAKSFSKRSFAER
TAMNTPIQGSAADIIKIAMIRMQDELEKRHLKAKMLLQIHDELVFEAPKEEIPILSELVPKVMDSAVKLDVPLKVDSKYG
DTWYDLKK
>SEQF1778_EEI66149.1 DNA-formamidopyrimidine glycosylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPELPEVETVRRGLLKIAAKRKINAIDVYYGKTITNDVEDFRQALIGQTIENVDRRGKYLLFRFTNDLTMISHLRMEGKY
YNQPIGGPIDKHTHVVFEFTDGTELCYQDTRKFGRMTLVKTGDEMNVGGLKTIGPEPTEDAFTLPYFTAELKKSRGKIKP
FLLNQRHVAGLGNIYVDEVLWMTGINPEQPANTLTASQITELRKNIIKELATAIKYKGTTVHSFTNAFGDAGAFQDRLKA
YGHAGDECPRCGTKMVKIKVAERGTTFCPHCQVLKE
>SEQF1778_EEI66150.1 dephospho-CoA kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKIVGLTGGIATGKTTVSTILRQAGIPVIDADQVARQVQTPDSVGLTRIVKVFGPKVLLPTGELNRQTLAKIVFNDKEA
LKKLNEILQPLIYDAIFAQVNTLKKQGIPLVVLDVPLLFEQHYDEDCDYVVVVYTDPQTQLKRLMARDHCSKEEAQARIV
AQMPLSDKEARADFKINNNGDQAALQKRVASLINQLKAE
>SEQF1778_EEI66151.1 transcriptional regulator NrdR domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MERLTKIADKVEKQIRSIGESEVSSQIIGKFVMNELKGVDEIAYIRFASVYRQFKDVDAFMSELETMMKAEHKK
>SEQF1778_EEI66152.1 replication initiation and membrane attachment protein, DnaB/DnaD family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTAAAFDPQAGYVVTASTAFISFNDQTFATFYQPILGPVAFSFFYALKARLLPNPTIANRTLQSDLLAQVNAGGRQVLEA
LHRLEAVGLVQTYFQHDEIGDVYVYELQPTLTPEKFLADNLLSILLLEEVGEDAFGRLTKQSRQYKLASSNTSLTNVSHN
FFEEFHINSQSITETPQAILTARKQAPVEKQPQLTAGISDDFDWSTLIHLLANQPIVSADLENNRDLILLEHQLYGIDAP
TMKTLVLRSIDLQTNHFNPKKFKQIVASTYNIVYSSTTKVAEKEAPVTNRNSELTSKDQELLATAKDYSPVEFLQVLKGQ
TGGYVTSGERHILTGLVAQEKLTQDAINILTWYVISDRGNSTLTANFVDAIANNWLQHGVINGEQAIVQLKTFNKQSQEK
KKETKTPKKNKWRKTIKEPMPAWSKKDTSELMKKASSQEIAKLRERIANRKKK
>SEQF1778_EEI66153.1 putative primosomal protein DnaI [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQSLNKTLQELMRGQNIANNIQQTMKQVYADKDVQAFLNENRDRLSKEAIKRGQSKLYEFFHEKQLIEKGVPTVAPGYSP
QLVISAGQIDVTYVPTKQLLERQRQRYIQRLVNSINMPKFIKNASYDDYYLNEDTQTDTRTKAIQAAMDFTDNYQKDNFQ
PGLYLYGKFGVGKTYLLGAIANELAKSKGVATTMVHFPSFAVEMRNSIKQNNTGEKLDAIKRAPILMLDDVGAGAMTTWV
RDDILGVILEYRMQEELPTFFSSNFSMDELQNNHLAINAQGDNEPLKAARIMERIKYLSREIEMEGKNLRDKG
>SEQF1778_EEI66154.1 translation initiation factor IF-3 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIVNNGIRAREVRLIGQDGEQLGIKSKREALQLAEEANLDLVLVAPKARPAVARIMDYGKYRFEMQKKEREARKKQKTIT
VKEIRLSPSIDTNDFNVKLKRVRKFIEKGDKVRISLRFRGRAITHKDIGRDMIERMAEETSDIATVVQRPKMEGRSIFLT
LAPAADKAKN
>SEQF1778_EEI66155.1 ribosomal protein L35 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPKMKSNRAAAKRFKRTANGGFKSGNSFTSHRFHGKTKKQRRQLRGLSMMDKTNVKRYKKLLPFK
>SEQF1778_EEI66156.1 ribosomal protein L20 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVKGGTVTRARRKRIMKLAKGYRGSKHRLFKTAKDQVMKSYTYAFRDRKVNKRKFRELWIARINAAARMNDISYSKLMH
GLKVANIDINRKMLADLAVNDADAFKALVDEAKKALN
>SEQF1778_EEI66157.1 HAD phosphatase, family IIIA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVNTIYSVSPAQLKEQGVRAVFSDLDNTLIAWNNPDGTPELREWMDSLREAHIPLIVISNNSKERVGKAVNSLDLPFVSR
SLKPLSFGIDRARKKLNLAKDEVVMVGDQLLTDVAAANQAGIRSILVRPLLNTDKWDTRINRFFERRVWKSLNKKYPDLK
WQEDLND
>SEQF1778_EEI66158.1 ribosome biogenesis GTPase YqeH [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEQEQQTEELRCIGCGSIIQTEDPNGLGYTPKSALERGKETGELYCQRCFRLRHYNEIAPVSLTDDDFLRLLNQIRDAN
ALIVYVVDVFDFNGSLIPGLHRFVGDNPVLLVGNKEDLLPRSLRRPKLTDWIRQQANIAGLRPIDTVLVSAKKNHQIDHL
LDVIEKYRHNRDVYVVGVTNVGKSTLINQIIKQRTGVKELITTSRFPGTTLDKIEIPLDDGHVLVDTPGIIHQEQMAHVL
SPKDLKIVAPQKEIKPKTYQLNDGQTLFLGGVARFDYLHGERAGMVAYFDNNLPIHRTKLSNADNFYAKHLGDLLTPPTS
DEKDGFPPLERYEFHITEKSDIVFEGLGWITVPAKTTVAAWVPKGVGALVRRAMI
>SEQF1778_EEI66159.1 RNA-binding protein, YhbY family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLRGKQKRFLRAQANHLQPLFSVGKDGLTDNWLAQLDGALDRRELIKVSILQNSDVTTDEVRELIEEKTSIQVVQVIGR
VLVLFKVSANKDARELSSRVAEI
>SEQF1778_EEI66160.1 nicotinate-nucleotide adenylyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQTQAQPETKVSGHRKRIGLYGGTFNPIHNAHLFMADQVGHALCLDRVDFLPDAKPPHVDHKDSLDPQLRLQMLKLAVAD
NPFLGIECTELERGGVSYTYDTIKYLLDKHPNVDYYFIIGGDMVDYLDKWYRINDLIRLPHFHFVGVHRQGAKNETRYPV
IWVDVPTVDFSSTDIRQRVQRGQSIKYMVPDAVSKFIEEHQLYRE
>SEQF1778_EEI66161.1 hydrolase, HD family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEELVYNKSYIPMTRSELIDRLKKALKNRRFQHVLRVEKTAIELAAQYGVDIEKASIAGLCHDYAKQRPDEDFIAEIKK
KGLNPLLLDYGNAIWHGVVGAELIKDELGIWDEDILNAVRHHTTGAPVMTKLEQVIYMADYIEPGRDFAGVKKARVITAA
NLQAGVAYQTKHTLAYLIENGKPVYPKTIDTYNAWVPQYEGEID
>SEQF1778_EEI66162.1 iojap-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDSKQLLEMVVKAADGRRAEDIVALKVDEISPMADYFVIMTGGSDRQVQAITNAIVEKAHEENVKIGSVEGKNHAQWVLV
DLGDVVVHVFREETRQFYNLEKLWADAPLVNINDWIND
>SEQF1778_EEI66163.1 methyltransferase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYQSFAQLYDQLFDPEMYQKWEKFTIKNLPANTKSILDLAGGSGRLGVMLAARGFDVTVADFSAEMLSIADQHATEAGV
SMNLLQADMRDLSALPQYDAITCYADSFCYLDDAAAVQKTFNEIADHLKDNGVFLFDVISPYQTDVIYPGYMFNYEDEDH
QRVFMWQSFKDDDVEHGVIHELAFFTRDNDGRYDRVGETHYERAYELPLLKQMLSQTGFNSVEVGSNFSTSIKEEKPTRW
FFKCYK
>SEQF1778_EEI66164.1 hypothetical protein HMPREF0534_0528 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKAVGMVVEYNPFHNGHRYHLQQAKKISGADVTVAVMSGNFTQRGEPTIVDKWSRARTAVMNGVDLVIELPVFYAVQPAH
RFAGGAMSLLNALGVDSIVFGSEHPEWNFARLVKAEEAFNQESFNKYNATYATQFNQQLKEQTGVTLIDPNDILAFAYTK
AKINQGYHFELLPIKRQGSNYHDQQIKGKIASASAIRQAISEKGDYRQAVPQVMGDILATINNIPSWTELYPLLRNQLIQ
APISTLQSTYLMAEGLEYRMKEAAQRSLDFNSFMKFTKTKRYTYAHLLRVCLYTILQITQEEVDEHSKHPYLHVLAFNKQ
GREYLHQVKKQLDLPLITKVDQEMRDQLLNLDYRAGKLYQLFTPIEQDLKHPPIIIN
>SEQF1778_EEI66165.1 putative ACR, COG1399 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKWSLAELHRYQDEPLHIQSTFDLNASLTKLFPDIILAVQPVKVDGYVTYDDGDGTISAHVTTTLTVPSSRSLTPVQLPL
DFTFSETYIDDRSHFARYEDEDEVVFLIKKGDSIDFDTALAENIVEQVPLRVLSAEEKSGKPMPNGKGWSVISEDDYKAQ
QQKDDKVDPRLAKLQNLFPDQDNKK
>SEQF1778_EEI66166.1 ribosomal protein L32 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVPARKTSKTKKRMRRGHIKLNVPGLTPCPNCGELRKSHMVCPSCGYYDGKQVVNTNN
>SEQF1778_EEI66167.1 hypothetical protein HMPREF0534_0505 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLNDAIQECWSKIGEGQVATYIPALAKVDPY
>SEQF1778_EEI66168.1 hypothetical protein HMPREF0534_0506 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNANNNSLNPWLILVTLGASGIAGFIAGKLFGNRQISADRILKLVKNDFASEGSLTGSWINDKAIPFQRFAVKTHAYEGG
VSRLEDGEEVDYEFIADAYTGSLLELKRIENN
>SEQF1778_EEI66169.1 thioredoxin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRLPQLKEDQLIETIGNGKVVLFFTADWCPDCRFIKPAMPEIEQDFSDYTFYEVDRDENIDLAAELNVFGIPSFIVYDN
GKEIGRFVNKDRKTKQQVEDFLNNLK
>SEQF1778_EEI66170.1 tRNA binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLISSYNPNELGDILVVITAPDADDQITKIADDVAQITAEKDGALLGYNFMNASKILPELTSENGQVFLDAAQVEKLNAK
LQEAGFDKLLTADEDPKFVVGYVEKLTDHPKSDHLKVTQTRIADDKTVQIVCGSPNVAEGIKVVVARPGAMMPDGKIIWP
GQLMGVDSDGMLCGFRELRIKNAPDEKGLFIIPDDWQEVGEPVDFAKADTFYPEN
>SEQF1778_EEI66171.1 UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEQNTYYFVGIKGTGMASLARILHDKGHQVLGSDIEKETFTQAPLLAAGIKILPFDPANLKPGMIVIQGNAFDDDHPEIK
RAHELGLKILSYPEAVENEVKNHTSIGIAGAHGKTSTTALLSHVLAAVEPTSYLIGDGVGKGNADARFFVFEADEYRDHF
LAYHPDYAIMTNVDFDHPDYFNDLADVRDSFETYGKQVQRAIFAWGDDPSLRNLNVDVPVYYYGTNPDDDFRAENIQRTP
EGSTYDAYFRDQKLGTFTIHLYGEHSVLNSLAVLAVAYMEHMNMDEIQQELANFSGVKRRFSETDIADITIIDDYAHHPS
EIKATIDAARQKYPDREVIAVFQPHTYSRLAAYIDGFAESLSRADKTFVTPIFGSIRENAGNVSSADLEQRIDGSEGIDM
DTMDKLLQYHNAVVVFMGAGDVEKYEEKYKELLK
>SEQF1778_EEI66172.1 hypothetical protein HMPREF0534_0510 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNFSQEPGRRVVTDAAGLNSFLTRMYGNMTLAVLVSAFSAYLTMGVFRSAVFGFFSAHPGMVWVILLLPIALSMGVSFS
ATRNPVGAFIMLMLTAIIYGVEFAIIAGVYSGASIASAFVSSAAVFVTMALYGTITKRDLSKFGAHAMAALIALMIAYLI
NMFLQSPAIAYIFSFIAVIIFTVLTAWDAQKMKQIYINYGGEVSTNGLAVLGALQLYLDFVNLFISLLQIFGMSDRN
>SEQF1778_EEI66173.1 hypothetical protein HMPREF0534_0499, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQRLKEIQEEFKRLSSEVSQLKNSIDELQAAIPGVQKFINDVERDVKKWKFKTEPRLNRIQIILDVLKIDQKEQQK
>SEQF1778_EEI66174.1 histidine triad domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNNCIFCKIINGEIPSYTVYEDDVVKAFLDISQGTPGHTLVIPKKHVPDLFAYDADLAAQVFSRIPKIARAVKASNPAI
KGMNVVNNNGEVAYQSVFHSHFHLIPRYTSDDDFKMIFKDNSGNYNDEKYKEIQQSIIDQMKED
>SEQF1778_EEI66175.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALEINKLVGGYSQIPVLKDVSFDVQPGELVGLIGLNGAGKSTTLNHVIGLLRPFSGSIKINGLTIQANPEEYKKQIAYV
PETPILYDELTLREHIDLTIMAYELDHDAAWQRATKLLKLFRLDNKLDWFPANFSKGMKQKVMICCAFMTKAKLLIIDEP
FYGLDPLAVHDLLDLIEQKKKEGVAVLMSTHVLDTAQRYCDRFVLLADGKVRAHGTLDELRAAGDHAGESLDEIYLHLAK
GDRDE
>SEQF1778_EEI66176.1 bacterial ABC transporter protein EcsB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKLFSKRRSQHFMLLLRYWRLVFNDHFVIALFFLFGALAYGYSQWLPTLGSHEWWTRLILIGWFTVIAQIGRLATLIKK
PDPVFLLPQVEGIHRYLNQATWYSLILAEIMTVVGAFIALPFALTTEKLSSAEIVTIFLVTIVNKADWMHVARKSLSLRW
GDQQWRTRLEYWVNPLLASIAMWLVNPYVGLVVAVILYLAVIVYYRDLAVNWRIAVKAEQDRMYSVYRFFNLFTDVPSVQ
GNTKRRKWADGLIRWLSKDGQPWSYLYARAFVRSTEVSGIVSRLTLLGMVIVFLLPAGWLSTLVVVLFIYLIATQLMPLY
DQYESNVFTHIYPIPASQQQADFKQLFAKVTALEALLIALASIGWQLNVGQMVINLIIAAVEVVLLSRFYFNVRVKKLMK
>SEQF1778_EEI66177.1 tRNA (guanine-N(7)-)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRVKHKKWADPLIAAHPELMIDNATQFKGKWQSRFAKEQPLHLEVGMGKGQFIIGMAKAHPEINFIGLEIQRTVAAIALK
KALEEDLPNLQLICGDGEDLQEYFEDGEVAKMYLNFSDPWPKKRHAKRRLTYKTFLATYQQILQDQGVIELKTDNMGLFE
FSLESMNNYGMIFDGVWLDLHHSEENEHNVETEYEQKFAAKGQPIYKLIANFK
>SEQF1778_EEI66178.1 Gram-positive signal peptide protein, YSIRK family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKNNAQEYVRKMEQQQQRFGLRKLSVGVASVLLGTTFMVGGTVAHADSTPTMEEATTANTDITQLVSTSVVQADKQTNE
EQNAAENTSSNSQKEQQLINKTSDESTDQLNNKKNQELVKDNEYESITNLNKNNVNTQNTPVEESKVSQSATEQNARIDL
TFVDDDDNGKIVDYSEYLPSEDNGHHYAYGKVGDKVSPKAYNK
>SEQF1778_EEI66179.1 arginine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSDKQQVAAALAQALPEMDVKEIEAKIERPKDSSNGDYAFPTFFLAKTLHKAPQMIASELVEKVDQDGFEKVVVAGPYIN
FFLDKAQVGAKILQTILADPEHYGEIDLGHQSNVTIDYSSPNIAKPMGMGHLRSTMIGEAVARILEKVNYNLIRIDYLGD
WGTQFGKLMAAYEMWGDEAEVKKDPINTLLKYYVRINNEADEHPEYTEAGRDWFAKLEHGDEEAWRLWHWFREVSLERFQ
RVYKMLDVNFDSFNGEAFSAQKMEEPIQLLRDKNLLKPSRGAEIVDLDEYNLPPLLIIKSNGTTTYITRDLATALFRKRM
YGHAKSLYVVGAEQETYFKQLRAALKEMGFNWWDQIEHISFGLMNLNGKKMSTRKGNVVSLEDVLNDSIDLARKQIAEKN
PDLENADEVAKEVGVGAVIFHDLKNYRRNAVNFKLEDVVKFEGETGPYVQYARARAESILRKGGIRDFSDVDLTNAGTEA
WELISFLGQYSEAIKRAALNYDPSVIAKYALELAKKFNQYYAHTRILDKDEAQPARLALTQAVSDVLKSALNLLDIKAPD
EM
>SEQF1778_EEI66180.1 penicillin-binding protein, 1A family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNREPQSNSDLKERIMKWLKKTWASFRVWFKHYWQLFVAMLKKFWHRYQLTRWIIVIFLGIFLITSIHLTFVAKTADVKN
LKNRLQRPTMIYDRSNQSAGSLYAQKGTYVELKDISSNVPNAVLSTEDRNFYHEHGFSVKGLGRAGVLLVKNKLLHRDYI
SGGGSTLTQQLVKNAFLTQQQTFSRKAREIFIAVEVENQYSKNEILTMYLNNAYFGHGVWGVQDAAKRYFNENASQLTVP
QAATLAGMLTSPGMYDPVEHPTATKQRRNMVLQLMVENHKLSQSAADQYKQTPLNITNGYVPNDSYKYPYFFDAVIAEAE
SRYHISEKDIMNNGYRIYTTLDQDQQRSMQQTYDDDDNFPQNSADGTMVQSASIAMNPKNGGITAVVGGRGKHVFRGFNR
STQMRRQPGSTIKPIVVYTPALEHGYFYDSTLQDKKQSYGTNNYTPKNYDDTYSGTVPMYKALYESLNAPAVWLLNKIGV
NRGYDMAKKFGLPVEKGDKNLALALGGMTRGVSPQQMARAYAVFANDGLMPSPHYITKIEDASGKVIAKNDGSKNKRIIS
GKTAKEMTSMLIGVFDHGTGETAKPSGYTLAGKTGTTNSGVKGDDSNDRDKWIVGYTPDVVVATWEGYDDTNQSHTLNDI
SERSINYLYKNEMSAILPNTAGTKFTVEDAQTRAKEKTKGSSKGWGSFLKDGGDFVNNFNQSVNNFGNKASQWWSNVRSL
F
>SEQF1778_EEI66181.1 hypothetical protein HMPREF0534_0495 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVVNIYDTANELSRQLRETQEYQGLQKAFEALKADSDTFDTFKKFQQAQADAQHKQMTGQQPTDDEIKNIQNLAKEVSGK
KVVQDLMNQERQVDSMLQQLNKTITSPIQDLYSEVMPKMPGQE
>SEQF1778_EEI66182.1 Ser/Thr phosphatase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRFIHTADLHLDSPFLGLTSMPKPLWERVHSSTFTAFQKIVDDVIDLKVDFVLISGDIYDRDQQSIAATDFFIKQCERLK
QARIPVYLLYGNHDYQIVQDTGELPANVHVFGNRVTTTTLTLANHDSVAISGFSYDQRWIQEDQVKKYPPKRNETWHIGM
LHGAVRQSQDNHYAPFTTDELIDKNYDYWALGHIHKHQILNEKPPIIYSGNPQGRHKNEAGQHGYYLVESQGNKLVPQFK
PVAEIEWTSLTVNALPTSSLVEVEQSLAQAIDDKLKNAPFQLVELTIANIEQLSPTIRHLLANGDVLEHLQDQNADNGKW
WVYDLLLHQQNSLPSMTDLDEQYWQQAAQEVFTPANIAELTKSLARDADLAAKLTTLDLKQLKQAATQLLRRED
>SEQF1778_EEI66183.1 RecF/RecN/SMC N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIKKVRIDGFGKWHDQDFDFTANPQIIYGPNEAGKTTLMAFLVSILFGFADGRGKNRFAQYIPKTTSNYGGSLLVEING
HDYVIKRQRGRNGGKVSVTDSQGRQGGEQELKQLLGPMDRSLYQALFSFGQRDLTAVDELNRDEWQQHLQQLGAVGSAQW
DQLINQYQKQADHLYKPRGRKWPLNQDLHQYANLTDKINQARGKFHCYQDLQADLKTNKAKLRQAQAELQKQQPLLQKLA
HLQQLWPVYYEWQSSHQTRPLADYLTDQQVTMAQELQVREKELRRQQQVYQQRLARIDHQSPQAPKHSPQSMPELQRLKE
QVVELQAEEALQHRQQTQANQWQQELTAIKTRYHHPLPAPLTSQEKAELTRLLNVQPLSRANTNQSNGDPSRAAMIGIIG
GFVLFIIGLLANATFITVIGAIAAFATVMYLYYQRQGSHSAPVTTDSQAITAFGQKHGLQDFPLDQWLLIQGDLQRNAEL
AAQLQTAKQDQQRYDHQLAIFNQQLPPALQNLTLAAVRNKLDDLLEQGQQARQDIQANTREKATIANNLAQLNQDYSKIH
QQKLAIYQQAGVHDDNQFTQYLANRSAAQSQALASDAYGQQLTAEDRQALAAYANRDELMTALAKTRYQLDQLNLTISHT
HEEIQKDKVEIDSLVKDGTLSNLEQERANLAAKIWHEVQEWLRYQLAIQWINKALVGASADRYPAIIRQAEQYFALLTAH
RYSRIRLTADGVKVVRRDQEVFLVEELSQGTAEQLYIALRLGFVTVMSDQANFPVIIDDGFVNFDNVRRQRMLALLEKIA
EKNQVIYFTADDRIKDLDVKILDLQALNRE
>SEQF1778_EEI66184.1 PPIC-type PPIASE domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSKKLIAIIAGAALMMPLAACGNKAVATTSGGKITESEYYSSMKQTSAGKQVLQQMILDKVLEKQYGKEVSDKQVNAQY
NTYKNEYGSDFNAYLQSQNLTEKSLKQQIRSNLLLTAAARHYSHITNKQINKQWTKYQPKVQTATILVGSKSDAEDIINQ
LNDSSNKYKTFKKLAKSKSTDSQTKNNGGKLPAFDNTDNQLDSAYKKAAFKLKTGEYTTTPVKTDDGYQVIYMIEHPAKG
KKSQHINDLKNQIVQENMNNQNFMRKVVSNVLKKGNVSIKENDVKNILDDYLNSSATTSSSSNNSSSTSSNK
>SEQF1778_EEI66185.1 hypothetical protein HMPREF0534_0479 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVFFVKAEFILKVVIPPFIIFAILVWLTAEHYISGWVMYLLWVIGFVVANIIVTKISTRWSIQRMREKRAKEEKNNDKS
N
>SEQF1778_EEI66186.1 CAAX amino terminal protease family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKVIKQSWIFRMILIALMLIAIEIPPIAVNFALRYSKTNQLIVDGFMVLFICLMLAIIWWAHRTYETYNQLGQPAGIKV
GWIIGGYLAIVLGMDVLSYLNQLIYHQTETANNAALGSMLGHNEVITIVFCFSAVVLSPIAEEFIFRGTLTNMFFKRGNI
WPKVIFSGVIFSTGHMSTNPISFLIYAYMGMVLAYVYLRTDDIRNSIAIHMINNAIAMYVLLVQVI
>SEQF1778_EEI66187.1 hypothetical protein HMPREF0534_0481 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFLSTEGFPQAHRILGIVNATSHLAMPTEAIDSFESMDQLFSDVQEKLKRRASEKGADGVVGVRFTTDVANMQVAPKFLV
LTAYGTMIQFVK
>SEQF1778_EEI66188.1 ASCH domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVLSIHPEYGMEILNDTKTEEYRTWTTKYRGDLLICNSAKKTHGAVASHALCVAKITGIEERYDGEQKYYAWVIAPFEE
GGSYWIEPLKVKGQLKLFNVDDRLIKPVPFTNPFSKAGEQWYQEKIAPLIY
>SEQF1778_EEI66189.1 dihydroneopterin aldolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAFNTYNGVFAEEKKLGQKIEIDCEMDYPIETMVKTDELEETVSYADVYETIAEFVAHHNYNLIESLANNLLHELFKTYP
MLNGIRLRIRKYSVPIAGIFDNVEIEVAGSK
>SEQF1778_EEI66190.1 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEVYLSIGSNMGNRLANLQKAIQMLNVPPKIDITAISSVYETEPVGGVKQDSFYNIAVKVATGLTAQQLLDHLHNIEQE
LHRRRLIHWGPRTIDLDIIDFGHQHIKTSTLTIPHPEMANRQFVLLPMREITNQNDPYYQQLDHLLNKTPDHNWLKKIYG
REVFSWTNKK
>SEQF1778_EEI66191.1 GTP cyclohydrolase I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDQQKIAKAVKDLLIAIGEDPEREGLAETPQRVAKMYQEVFSSLNHQPEEVANYKVFHVDDVPEMVLVQHIPFYSMCEHH
LLPFFGYANVAYVPKDKKVIGLSKIPRLLDFVTKKPGMQERVTTDLVAELQRILDPAGIAVTIAARHLCMEMRGVNKAGQ
FTYTDKFTGQFKTDSDLKQEFLNQTRNYRADL
>SEQF1778_EEI66192.1 bifunctional protein FolC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQTYEQINAGFNRQMLGGQQDRVKFLRRILTRLKNPDQRFKIIHIAGTNGKGSTGTMLEQGLQNAGYRVGYFSSPALVDD
REQIKVNDHLISKKDFAMTYQKITERLPIDLSPDDITIFEWWTLIMLQYFADQKVDWAVIECGLGGQDDATNIINAPFIS
VITHVAFDHTRILGPTITQIAQAKAGIIKNGTKQVFLAPHQEKDTLTIIKAKAHQQRVGLTQADAQSIVDGKAILKVNHK
IYKVPFNLLGTFQSENLGTVVSVFNFLFQRRLVTSWQPLLSTLATVKIAGRMQKIADHPSIILDGAHNPDAAKQLTETIS
KFPRNKVIMVLGFLADKNISQMVKIYQQMADKIIITTPDHPTRALDVSELKSALPQAIIADNPRKGLVVAKKIAEPNDLI
IVTGSFYTIKDIEASLDEK
>SEQF1778_EEI66193.1 Ham1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNNFIIATHNIHKIKEIETILNFYHQHGEGYRKKLPQQTFPPESIVSYEENAKAKALFISQQLPAAKIIADDSGLELPA
FPGRYGVQTARELAQEVPNGDLNDYLIHLVDGKSRQFIMKTTIALAINNQVVKIGHGQLKGTIAHAERGVNATGFDRIFI
PAGESQTLAEMDQPTRISYLHRARAVKNLLDQLGE
>SEQF1778_EEI66194.1 dihydropteroate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVTENLVTKDYSKLVSAILADQVNRHQQLLLTWECPDVETAGMVERFIRHFDTPVACVEKRVEFSFPLLSLKELIARVK
ERWENDQELIASLEQVYRRHQIIWRAGRFTFDLTEQPVIYGILNVTPDSFYDGGKFQSHSAIASQIAKMVAAGANVIEVG
GQTTKPGGFKEVDPEEEIARIMPAIQLLRENYPQLAIAVDTYKLPVMAAAIEAGVDIINDVQAFNSKQKLILMAKANVGM
VTMHSSRTHDYDNLTVAMQKFFEHNLGTIAAAGIDLERVILDQGIGYAKVADGYQDYAMMRNIDQLNYLHRPIMVAISRK
GFGQKLFNLAKEDRLGVTLIAETAMYLRGGRVLRVHDVEETSQLVKMIDTIENSYWFRSTNSQFPRQ
>SEQF1778_EEI66195.1 hypothetical protein HMPREF0534_0489 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKIIVAVLIIILILTTTTGLHAKIERKVTNWLELSRLFFFLLLTASIVHTFLHFKTQLLSNLVWIIFLILIYILMETAF
RLKRETFGNPYLTALLFIALIIALGIGCWWI
>SEQF1778_EEI66196.1 hypothetical protein HMPREF0534_0490 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADFEIGDIVKGKKFGPLEHEFSGVVEKVYTNSIMVSIQDFDPSDKSGVNELNGRAVIRQKEAKMVKAVPREEEKDDEET
VEDAKSSKKS
>SEQF1778_EEI66197.1 L-lactate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDTYRHKVVLIGDGAVGSSFAFSLLQSTNEVDELVLVDRTKSKAVGDAADLADITPLTNPVKIYAGTYEDAADADVVVI
TAGIPRKPGETRLDLVNKNTTILKSIIKPIVKSGFTGVFVISSNPVDILTTIAQRISGFPKERVIGTGTSLDSMRLRVLL
SKKLHLSVNVIDALMLGEHGDTSFAAFNEITIGGKALNIITALSNTDKSEIEKAVHEAGSQIIANKGGTFYGIAKCLSYI
TRAIIENRNLVLPISAPLDGQYGINDLYLGTPAIINSQGIGQVVEYPLTSDEVKKMQQSAEAMHQVLAKIEI
>SEQF1778_EEI66198.1 phosphomethylpyrimidine kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNPTIQAVTIAGHDSDGSAGMPADLHAFFADGVYGHGILTAAVSGNSYGITSSQVMPQEFIAEQFKVLSEDFDIKAAKT
GMLANDDVINVVADNYSPEHFGPLVVDPVIITKHGAMLLEQSAYELFRERIIPLATVITPNFYEAQKLTGIEMSTDEERV
KAAHYLQDLGAKNVVIKGAHNDDSQTTVDDFVLLEDGDSFWLKKPFVKTDRLNGTGDSFSAIIAAELAKGNNVKIAVTKA
KDAVYAAIANPLTVGHKFGPINHWDAQKELH
>SEQF1778_EEI66199.1 exodeoxyribonuclease, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFISWSVNGLKSAINHGFVEDFKRQDADFFCLQCTRLDKGEEPIQIPDY
>SEQF1778_EEI66200.1 pyridine nucleotide-disulfide oxidoreductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTSKYETESKGYTMTTVMQEAARCLLCHDAPCSQACPAHTNPAKFIRSVLFRNVKGAAETIRENNALGSICARVCPTERY
CEKACTRAKIDGPIDIGGIQRYVTDMERKMNMKILKAGKPNGMSIAIIGSGPSGLQAATTLREKGYAVDIYEKAAKAGGY
LTYGIPEYRLPEEIVDYEVQRIVDLGAHIIYNTTVGKDISMDDLKARYNAVIVAIGTSEAKMLPMFEHNICTESAISFLA
RAKESKGNLEDLPQNVLVIGGGDVAMDVVTTLKKLNVPYVTDVVYEQFDEFKASKKELAGAQEAGVTIVDGYVPKEVHQN
RATFTHRKIKSELTITADKIILAVGQKANAEGLDIDLQHNEIPFREPRFRTKDPKVFATGDIVAGDKTVVVAVQKGKEVA
EEIDRLLGGQEND
>SEQF1778_EEI66201.1 4Fe-4S binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKKDLSVDFLGVHFENPFCLSSSPVGNCYEMCKNAYDAGWGGIVYKTLSPTHFKIDEVSPRFDELAKEDMHFVAFKNME
QLSEHPLEQDLADMRRLKEEYPNKVLIASIMGETLEDWTNLAKLVTEAGADMIELNFSCPQMTSHTMGSDVGTNPELCKK
NCEAVKRGTSLPVLAKMTPNITTMVPVVKACLEGGADGFSAINTVKSIVDVDLKKKVGLPNIDGKSSVSGLSGKAVKPIA
LRFLQQLRSAAGLEQLPISGIGGIETWEDAAEFILLGATTLQVTTAIMEYGYRIIDDLTNGLMHYMEEQHVDHLQDLVGL
ANKNIIPTNQLDRNYKVYPKIDWDKCIGCGRCFISCQDGAHQALTWDDEKRQPVFDKSKCVGCQLCALVCPVGAIKLGLV
EIKPGHKGNPAEIDVGSQRLHRYHPVKANQEN
>SEQF1778_EEI66202.1 oxidoreductase, aldo/keto reductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKVTINDVSMPAIGIGTWNMGNSLVNRSTEIKAIQTAIDVGAQAIDTAEMYGDGRSEALVAEAIKPYSREKLFLIDKVL
PSNASKTKLEHSLDQSLAAVGTDYFDLYLLHWRGGIPLAETVNELERVKKAGKIKAWGVSNFDVSDLEELWRLKNGTDCV
ANEDLYNLDSRGIEFDLLPLMKQHQLPLIAYSPLAQGDSLSGKLTENPLLKEIAANHHMTVSQIMLAWVLRIGNVLAIPK
SSSPKHAEENVAAGNIELSDDELLALQKEFPSPNKKVPLAVI
>SEQF1778_EEI66203.1 Hsp20/alpha crystallin family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANELQNRNNLFDSLMNMRNWMNDDFFSNLTPVADHMKTDVTEDDKNYTVKIDMPGFDKKDIHINYANDILTVTGHRDTF
DDDGDKDGNVLHSERRYGQMSRQYRLPDVNKKDIKAQYKNGVLTITLPKKDETDDDENHIDIE
>SEQF1778_EEI66204.1 ImpB/MucB/SamB family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAIDLKSFYASVECTECGLDPLNANLVVADESRTSKTICLAVSPALKKFGVSGRPRLYEVEQRVAYLNNRRAKEMSHQRL
SPVVSIYRDELLKSPELKIGYRIARPRMNFYLEKSAAIYEIYLRYLPPEKIHVYSIDEVMMDITDYLNKYHVSARSLAKE
IIQTIKAETQITATAGIGTNLFLAKVAMDIVAKRIPGDEDGVRIAQMNEHTFRRYLWAHQPLTDFWRIGPGYARRLKKLG
LHTMGDIARCSLGKLSDPMNEEVLYREFGKNAEIIIDHAWGYESATIKDIKNYHSSDHGVYSGQVLPRPYNFTETRLVIQ
EMVNSLALQLTKQNLVTDQVALRVAYDVSNISEDYQGPLVTDFYGRQAPKPMHGKANLSLPTSSGTELMEAFMKLCDSGL
DRRLTARKITVIANHLLSPRLARLANYNEQLDLFTDSTKKHKNRSKVQEKDQKLQRLVLDLQNEYGKNAIIRAADLKKGA
TLLERNNQIGGHQA
>SEQF1778_EEI66205.1 hypothetical protein HMPREF0534_0459 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENEDLLKIEKSLFSDTSKYRDIINTPRHVSQAHTPMTTEDRAAQFSPFAALTGYHQLLAKVGEKYGHKTYPTAEMRHRI
RVQLAMIERGRSHPLIKVEFFNGKTGFYEEYTGKLKRIDYHAHHLIFDDGTRLIIQNIRKIKRDQFC
>SEQF1778_EEI66206.1 hypothetical protein HMPREF0534_0460 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFEETKKGFDWFSLIVGILFIIAGIASFTRPDKTLHFLAIVAGIAFIFRGIYELWFRQRIGRILGESSGWLIFSAILDII
LGIIFLFQPSFGVLFIAIIFAIWFILDSITELISAKFFKEFYRGYYWFIVILAILSLVLGVILLFSPLLSAITVVWLVST
FLIVFGIMKLIQAF
>SEQF1778_EEI66207.1 hypothetical protein HMPREF0534_0461 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITNEQRAHDIALTLLQSRAKDLKPIEAYHEYVNSLLPILKEIDKDFPNGIKEHL
>SEQF1778_EEI66208.1 VanZ-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTYCIPFFVEGEITLYALVHWIPFFIYFFAGSVLVTHNHLWEKFPNFSQHITIATFFIYLTAIDWLCLTPSIFNFSSAN
KLLFYFHGVPFNIIPLQGLSQEFFLNIVMTLPLGVYLYLINHQMPFSRAILYGFFFSLFIECNQFVCDLLFHIGRVADVD
DLISNTIGTTIGFAVMIILDQTIFHQVIKQFMLVGGKSDKLNN
>SEQF1778_EEI66209.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEKQEFTRKLKSRHIQLMALGGTIGTGLFLGSGKAIHAAGPAILLAYLITGIICFGIMRALGELLLSDLHYHSFMDAIR
DYLGNRVSFVMGWAYWVCWLALAMAEVTAIGLYFQLWFPQVPQWLPGLITLLILLGLNLMTVSTFGELEFWFALIKILAI
VILIAVGVILVLLHFHSVSGYLATPANLVNDGGFFATGTKGFMLSFQMVVFAFVGIEMVGVTAAEAENPKVVIPKAINGI
PIRIMLFYIGALAVIMCIYPWSKLSPSNSPFVLVFRDIGLPGAASIVNFVVITAAASACNSSLYTTGRMLAELTSTAHRP
VIRKISRLSKRSVPATAVIISAVVIGIAAILNLVMPEGVFTFVSSIATTSFLFVWAAIILAHLKYIRQHPQSRTFKMPGA
PFTDYVILVFLFIVLIVLCMEKQTLIALILTLAWFAILAVASLTQKKA
>SEQF1778_EEI66210.1 transcriptional regulator, Fur family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIDYNYFKKGDDIMAEAEFDRALDHLRENKVRLTPQRKTILNYLINHHTHPSVEMIYDDLKDTVDNISMATVYNTLKLF
VDYNLVIELKNGDGSTHFDYFGHPHYHVVCDNCGKISDVFDEHFTAITKELTVMTHEKTGYLVTGNNIEVHGICPECQRK
LHLNR
>SEQF1778_EEI66211.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDQSIARNGKSYSRFWFIFTLLVGTFTMSISQSSLSTAYPTLMNAFGISASTVQWLTTGFMLVMCVSMPISPWMLNNMSF
KTMFIGALGLFDIGSLMIVLTPASWGINGFWFMMIGRAMEAFAVGVLFPSYQTVLLEITPKEERGSTMGIAGLVMGSALA
CGPIVSGIVLKFFSWKSLFILFMLVISIIILMAASGLIQDVMERHETNLDWLSVILLVGLIGIMYVVDQTGKKNPAWEIN
AGIFIVSLIAVIWFCIRQLHLKHPLLELRVLKTFNYDLAILLTSISYIALIVTTIIFPLYYQGVLKVSPFVSGMALVPGA
VFLSILNPLSGKLADKIGFKPTMLVGMFMIIIGWVAGLIVLNHLSLLGMILCAMVIEGGNAFVMMPAVTLGANALPDELV
PHGTAVITTVRQVLGSAGVTISTLILTVATTNALQRGSSAQVASLHGYHLVFIGMIVTELIGLVLAFMLKNTNKEKSTK
>SEQF1778_EEI66212.1 DNA-3-methyladenine glycosylase I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLKRPQWANATPEMQDYYDHYWGFPVHDDQQLFAMLSLELFQAGLTWQTIWRRREAFNQAFDNFNIEKVASFTDEDINR
LCEDETIIRNRLKILAVINNAQVILKLRKTGKTFDNYVWRFVDDQPQDLGLTTDIELAPKTPASEEIAKQMRKDGFKFVG
PTIIYSFMTAVGMVNARLK
>SEQF1778_EEI66213.1 methionine adenosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAERHLFTSESVSEGHPDKIADQISDAILDELLKKDPDSRVAVETSVTTGLVLVFGEVSTKAYVNIQQIVRDTIRKIGYT
DGKYGFDADNCAVITAIDEQSPDIAQGVDDSLETREGEADPLDKIGAGDQGLMFGYATDETPEYMPLTLVLSHKLMRKIA
QLRKDGVISYLRPDAKAEVTVEYDENDKPLRVDTVVLSTQHDPEVSLDQIKKDIKEQVIEAVIPAKYLDDQTKYFINPTG
RFVIGGPQGDAGLTGRKIIVDTYGGAAHHGGGAFSGKDATKVDRSASYAARYIAKNIVAAGYAKKAEIQVAYAIGVAEPV
SIMINTYGTGTRSEEELIAAVRKVFDLRPAGIIEMLDLKRPIYKQTAAYGHFGRTDVDLPWEHLDKVDELKEILG
>SEQF1778_EEI66214.1 leucine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAYNHKTIEKKWQKFWKKNETFKADLNKDQKKYYALDMFPYPSGQGLHVGHPEGYTATDVMSRMKRMQGFNVLHPMGWDA
FGLPAEQYALKTGHNPKDFTNKNIDHFRDQIQSLGFSYDWDREVNTTDPKFYKWTQWIFEQLYKKGLAYESEIMVNWAPD
FMGGTVVANEEVEDGKTKRGGYPVYRKPMRQWVLKITAYADRLIDDLDLVDWPESVKEMQRNWIGRSEGASVFFPVVGDE
DTKIEVFTTRADTLFGASYVVLAPEQELVDQLTTPEHKAEVEKYKEEASRRSDLERTDLNKDKTGVFTGSYVINPVNGEK
LPIWISDYVLASYGTGAVMAVPSGDQRDYDFATKFDLPIKPVIEGTDVSEGAFDGDGKHINSGFLDGLNIADAKQKMIDW
LEEHDAGHKKVNYRLRDWIFSRQRYWGEPIPVIHWDDGTTSLVPEDELPLELPKTDNIEPSGTGESPLANVEDWVNVYDE
NGRHGLRETNTMPQWAGSSWYWLRYTDPHNDKEFASKEALDYWSPVDLYVGGAEHAVLHLLYARFWHKVLYDLGLVPTKE
PFMKLVNQGMILGSNHEKMSKSKGNVVNPDDIVDQYGADTLRLYEMFMGPLEESVPWDEKGLHGANKWVQRVWRLLMDDN
NHLRDRVSTFNDGKLTKVYNQTVKKVTEDYERMHFNTAISQLMVFVNEAYKVDDLPVEYMKGFVKMIAPIMPHMAEELWS
QFGESDTITYQSWPTYDPKALVEDEVEMIVQVNGKVRAKIKMAKDTDRDEAQQLALANEHVKKFTDGKDIKKVIVVPNKI
VNIVAK
>SEQF1778_EEI66215.1 toxin-antitoxin system, antitoxin component, HicB family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEIVSYPAIFTPKDNEIQVDFPDLPEAFTQGKTMDEAMDFAKLGLAITLNDKLGHFEEAPSVSSLEVLKQQHPDQIIKMV
TVDLEQY
>SEQF1778_EEI66216.1 polysaccharide biosynthesis protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEENKANDLSSTAVKKDSRTKMITGSAWMTAGSITSRILGALYIIPWVTWLGAYSNEANALYAQGYNIYNMFLVIATAGI
PSAISKMVAHYNGINQYGVSRRLYHSGMYVAMAMGVICTTVMMFGARLMDNGDPNMIPVIRSLAWAILIIPGMSITRGFL
QGYNWMAPSAISQFVEQLFRVIYMLAATYFIMKIQNGNWVSAVSQSTFAAFIGAIGAVIVLGIAWMRHQREMNDLVAQGE
VNTEVSTQTLIFKIIYQSIPFIIIESGVTIFQLIDQYTFKRMMPLVGHFTKYQMDVTYALFAFNANKLYMIVISLASALA
ATVIPLLATARAQNDQEDMRKQIQNVLLLFYFVMIPAALGLSAVAQQIYTVFYRYDAAGVVVLQFAAYISIMLGLYTVAA
AMMQGISENKKMMMFLAIGIVIKFILQFPCIWIFEGLGPLVSTGISMFVINYLILHSFNMEFHLRFDKMALPTNQILAYS
LVMFAGAKIVMLIIGHFVSPYGRYTAFFSLIPGVIVGAGIYLYLCLKSRLADQLLGPRVARLRIILHIK
>SEQF1778_EEI66217.1 YjeF domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKLTDQILKDVITPRPENSFKGTFGKVTLIGGNRNFGGAIIMASTAAVCAGAGLVTTATDEINASALHAQLPEAMFADF
TDDALVADLTKAATSVVVGPGLGNDETSLRILKNVFAHTTEKQNVIIDGSAITLMAMEKLEQPQGNIIYTPHEMEWQRLS
GIKIGDQTEDKNKEAQEKLSATVVLKKHHTEIYTDDQVYQLPIGTPAQAVGGMGDTLAGMVGGFTAEFNEKADKAVLAAV
YAHSAIAEKIAESQYIVLPHQISRALPAFMKKMEGMNEDHHIGFLN
>SEQF1778_EEI66218.1 putative dipeptidase PepV [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKAAEAQKENYLNDLVALMKIPSVRDDSAATDEYPLGPRPAQALKAFLEMAEQDGFKVKNIDNLVGYAEWGEGDETLAIL
AHLDVMPAGKGWDTDPFDPVIKDGNLYGRGASDDKGPGMAAYYALKYLKDQGVKFNKKVRFIVGTDEESNWTGMHRYFEV
EPAPTLGFSPDAEFPVINGEKGQVSLLLDVPAGNGDASIQLVSFESGLRFNMVPREAVALIRTDNPQEVTNDFGHFIEEN
PVEGNIESTDKGLKITVIGKAAHGMEPEKGINAATYLAKFLNRYDFGGGAKSFIEFLADYLHLDTRMDGFNGAYTDPVMG
ELTMNAGILNFDADKGGHIDMNFRFPKGITPDKLEDTVKAIADKLQIKVTQGPSQAPHYVDPDDPIVKTLMQAYIDQTGD
TDAKPEVVGGGTYGRLMKRGVAFGALMPHTPNTMHQANEYQPVNDLITSMAIYMEAINNLVTD
>SEQF1778_EEI66219.1 universal stress family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEVSRMSYQNILVGVDGSKQADMAFEKAVDTAKTNDAKLYLLSIINGERYPSTGPGGYGFVSHSIYDSAIETMQKKLADY
KKKAEAAGIKDVKTDVKVGNAKVELAERYPKENDIDLIIIGATGLNVVGRLLVGSTAAYTIREAPCDVTVVKTNLKNQKL
DIKETTYPEM
>SEQF1778_EEI66220.1 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKECFIVLNRRVITSALIVLTSLSGQPVKADVIQQAQFDANEDVKRAKPIDEEALVNHDEEYIDAYLTEYENAAQAKASE
QNNALTGTEEAPEHETIQSSTENSAEQRQLLEEDKKDEQVYQPQQPSAVQAQFINRIAPAAQQIGQEHDLYPSIIIAQAA
LESDWGCSTLGKAPNNNLFGVKGYFARQTVAQPTTEYDKQGHKFQVISNFRQYASEYEALRDYAQTLEDPLYQGVHRQNT
KNYREATRALRGRYATDPEYDRKLNQLIDTYQLTKYDDQFNTSNERANPVPMTDRKEESEAMPIVAKHPVQARKNDVNIP
QYVPLLGGVGTAGMIEMFRRLLKKRKEHD
>SEQF1778_EEI66221.1 deoxynucleoside kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVIITAGMIGVGKTTLTGKIAEHLHTKAFFEPVGENPVLPLYYKNPKQYGFLLQIYFLNKRFSMIKQALTDDNNVLDRSI
YEDALFTRENNAEGNITDTELEVYLKLLDNMMSDLQQLPKRAPDLMVYSETDFETILYRIKKRGRDYEQIDTNPELKDYY
YKMWSAYKQWYKDYDASPKMKIDLERYDLEDPKNVDAVLAMIDERLKSLR
>SEQF1778_EEI66222.1 hypothetical protein HMPREF0534_0476 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKESESENRVQLTMAKQQGTLIEVHNLPNDGYFNVGFVVALDPVFCLMISIDWDGKINGLIAIRIKSILYTERHSDYLM
TVSEKTKVAHDHNYFDIWQVQKFIDNHPEITQGNLLSNLLNDSYENRLPVVIGTEKYKGSDDFTGIITDLTPIKVTIHYY
NDHDLSSLWEYDILRAKIDYLRVRGTQMATGKQIFNDIFNEM
>SEQF1778_EEI66223.1 transcriptional regulator, LacI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKKITIRDLAKEAGVSVTTVSQILNNKGDRFSTATQERVLALRDKYKYVPDFNARNLILKSAKTIGVLVPNIANPFFGT
FVEGVQSIAREAEFIPLVFSANRDPKLEKYYLSQMIERSISGLVIASATMTTETIKEVISFNEIPYILFDQNHTQEGDRV
QTNDYLGGQIAAKHLIELGHKHIAVLTSDNPTENLNHRMNGFKNIIQENNLSLDPIHDVIRAPLTKDGGYKAAKDVLATG
ASAVFAANDEMAIGLLRGLHELDVKVPEDISVIGYDNIYWDDYVYPRLTTVQQPIFDLGAGATKMLIEQISHSSAEARVQ
NFPVKLIKRDSTSSYRPK
>SEQF1778_EEI66224.1 ribokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNHVTIVGSLNVDTTMKVKRMPLPGETIAALSKTNAAGGKGANQAVAAARSGAETAFVGQVGDDAGGKMMINDLKNNNV
DTTGIHVDDQAGTGSAAILLDESGQNSILVYGGANQQLSVKGVEDARDQIAATDFVIAQFETPQEATLRAFQIAKENGVK
TILNPAPAHEINPDLLKLTDLIIPNETESAALTGIIVTDETSMLMSAAKFAQMGVRNLIITVGAKGAFYCTQDGYNFIPA
FKVNAVDTTAAGDTFIGALSSQLKPDMSNIEKAIVYAQRASSLAVQKLGALPSIPTYDEVVAASKNN
>SEQF1778_EEI66225.1 putative exodeoxyribonuclease III [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNSIFDKEGRLITLEYPNFYLIDVYVPVSGEKLQHLDYRLDWDRAFLDYVTNLQSSKPVIIGGDMSVAYQPIDLAEPTE
DHHKAGFTKQERADFGKLLNAGLTDTFRYLHPNLHGAYTWWNYRYDARERNVGWRLNYFLVSDVWKERIEEAKILSDVKG
SSHCPIELVANVEV
>SEQF1778_EEI66226.1 hypothetical protein HMPREF0534_0450 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKESKIIDTKSLYVNPDRGVATLNYSQNYFTDIPSLINSDEVKEIVRLYLASRNPDNDDDAFDNATVNKFVDILKKVLF
EDDSAFDEYDPKDILESVEELYSYYRSLLRVSVINLSDNKIIGNEFRTIDTQFNNLVRKAYRILEEKLQGFENRTYRQVN
AATNATILVQQQDWKIPAGYEELKDIDFINTVMLRPPMMMHTKSNKREGVFSEVKDNPIERFRGERGKWYCYPAKIGESL
AFIYFNVDYLVNGIALSNLFEIASPDEIKGQKPDMILLFGLKETEGMVSHYYRDEKNDLWVGEVPYTDKTTYFGYMKKMC
LTLHNLHQIYNGRLPIHGSMLKIKFTNGKEKNVVFFGDSGAGKSESIEALQELADDKIVSMETIFDDMGSFTLTDGEPGV
YAQGTETGAFVRLDDLSSAVAFNNMDRGVYLNPEQKNARVIIPADTYENVIKHHHIDMWLYANNYSDEVGIHRFDTEEEA
EKVFIAGQRKALGTTDEVGMSKTFFANPFGPVQEPELTKPIIDKVFTKLFDQDVYVGEIFTHLGNDKSKDALKESAQELL
DVLMNN
>SEQF1778_EEI66227.1 LysM domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLSKKVAKITAAITGAVALGTVATATTANADSIYTVQAGDTLSGISYKLGHDLTFVDTLANNNNIADKNLIYVGQQLVI
KDDGEVAPATQEEVATLPAANVAPQATPAENQAQQNQQVQSNQEAPVAQQQVQTPQTQNVQQSSAQASTGYNSNVAGNDD
AAKAWIAARESGGSYSARNGQYIGKYQLSASYLNGDYSEANQERVADQYVASRYGSWSAAQSFWQSHGWY
>SEQF1778_EEI66228.1 anaerobic ribonucleoside-triphosphate reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVQIIDKKDLQSLTSVQVVKRDGTVTPFYSYKINLVLNALNADEQTSQSVYVTLLDALLNQTTVTTKKIADLFVQGLVN
ANHEELAKVYRDYRQHDEEAFAEATNPQNKLEQLFDRNSRIVHENANKDSHVFNTQRDLEAGVVSRALGLRMLPGIVAKA
HLRGDIHWHDLDYSPVTPETNCCLIDFDEMFKHGFKIGNAWVSSPRSIQTATAQMSQIIANVASLQYGGCSANRIDQLLE
PYAKLNYEKHMKDAEEWIVPEKREEFAREKTKKDIYDAMQALEYEINTLYSSQGQTPFTTINFGLGTSWIAREIQKAILK
IRIKGLGKEHRTAIFPKLTFTIKRGLNLDPEDPNYDIKQLALECSTKRMYPDLLMYDKIKELTGSFKTPMGCRSFLQGWT
DPETGKEVNSGRMNLGVVTVNLPRIALEAHGNKQLFWEIFQEKMNICKIALDYRIKRTKEAKPENAPLLYMYGAFGKRLK
KTDSVDEVFKNSRATVSLGYIGLYEVCTTFYGSNWEHNKEAHDFAIAITKAMHDLCAEWEKEEGYHFSLYSTPAESLTDT
FCQDDLKKFGRVEDVTDKEYYTNSFHYDVRKHPTPFEKLSFEEAFPKYAAGGFIHYCEYPNLRQNPKALEAVWDWAYDHV
GYLGTNTSIDQCFKCGFKGEFEATARGFKCPQCGNHDPATCDVVKRTCGYLGNPQQRPMVHGRHEEIIHRVKHMNAGMIK
NAAEFEQQRQMDNKAHAHITGDQI
>SEQF1778_EEI66229.1 anaerobic ribonucleoside-triphosphate reductase activating protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAETRLPRNPKSQEWLAKDHSLQYIADYKPFNFVDGEGVRCSLYVSGCLFNCPGCYNKAAQNFHYGQPYTQDLEDQIIED
LSQSYVQGLTLLGGEPFLNTQVCLKLVKRVRKEFGHEKDIWSWSGYTWEELMKESSDKLELLHYLDILVDGRFLLAKKDL
TLQFRGSSNQRIIDVPQSLQTGKVVIWDKLVH
>SEQF1778_EEI66230.1 hypothetical protein HMPREF0534_0448 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMAKIWKKEPAWLEKKRQLAVILQSRFPTLPGQEEWIDHWQKRTTGVSRGWLSLQEDSLTAMPLEQAVNEYSTLLQENLM
EKAIFWQDNQLAAMHLANIDCGQFIYLRPQITQERPIVFSPHLNSANTHNIIVISAGANAVIEEQMVNDTLLPSYEGTEI
LVGANAHVTYRQANRSTSKNIYRTIHAYQAHGSTLQFEVASQVQTKATVDLYSFLDGQNTQWTPTIALSGTQQLTAMVDG
FGKETSATLTQYRDSEMVTGAPFKVKAGEPLPISEDIHPLKELASSERWLKQIMTAE
>SEQF1778_EEI66231.1 LysM domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRMGFFFMKLTKNIAKITAAVAGAVALGTFATATTANADSVYTVQSGDTLSSISYKLGHDLTYVDSLASTNQIANKNLI
YVGQKLVIKDDGEVTQATAQQAATLPEASQAPASASVESQQPSQAPVVASQAPVATSQVQSSAAPVSAPAQSQAPVQSVA
PQHSTVSAAAQQSYSAPVQAQATSSNYSSNVSGNDAAAKAWIAARESGGSYSARNGQYVGKYQLSASYLNGDYSEANQER
VADQYVANRYGSWSAAQSFWQSHGWY
>SEQF1778_EEI66232.1 hypothetical protein HMPREF0534_0443 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKVRQISTNSNDFKNIKRVYNTVFPQNELLPLSLLKMRAKAGKAEFCSIYNEEGKWVGFFYTVYNKRIAYIFFLAIDPH
YHGQGLGSATLTAIKERYAGKQITLSAERPDPQAPNNEQRLRRHRFYAKNVFGKTGLYTVEKDNEKFDLLSIQSSVNPQF
YQQLMDSYLTNHRRHYLPYKIVKE
>SEQF1778_EEI66233.1 hypothetical protein HMPREF0534_0444 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFAPAIGPTLTGLILAKLSWQWIFWLFIPFLFIALIFAITSLENVGEITKPHIDMLSIIESAVGCSGLVIGASLASEDGW
TSPTVLSALIIGIIVLIFYTHRQLHLEEPILNLHIFKYAAFTIGSSIVMLDFGIILSTMYLLPLFYQRGLLVSVALTGLV
MLPGGIINAATSAVAGRLYDSIGAKRPVLIGFVLALFGALMLVFTTSHSALLYVICAHIILMIGCPLAMSPAQTSALSTL
SGLESSDGSTIMNTMQQVIGALATALATGCLAWGSSSISGSEAIRFTNGFHYGIYFAIILIVVALLLSFKIKDQKN
>SEQF1778_EEI66234.1 lincomycin resistance protein LmrB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENALQARKQSAHPGLMMVGMLLGAFVGMFSETSLNIALLKLMTAFQVSTSTIQWLVTGYMLIIGIILPLSSIITKWFTT
RQVILFALIDFMVGACISALAHNFTILLIGRMIQGVGTGLILPLMFAVVM
>SEQF1778_EEI66235.1 hypothetical protein HMPREF0534_0440, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTGYSTVNNGSQATDSNATNKPTIVLPTNGKESGAATQGQYINVVPKDSVAAQAGIQAPAAPETTSVT
>SEQF1778_EEI66236.1 hypothetical protein HMPREF0534_0441 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKDGYTVLELVKAAKVSRQAYYKWLKRELTTKDIQDQEILNLIKEIEKTNKQSIGYGKMTRLIKRAGLGYLVNKKRVIR
IMKEHGIKADYRQAKRKRDKERQTYQAENILNRQFKQEAANQVWVTDTTELAYNIHNYKVRLHVVLDLYGQFPISWLITP
TETSEGAIQVFKKAQKQEGVLAPLIHTDRRAAYTSKAFNQYLTSNNSQHSYSAPGIPADNAVIEH
>SEQF1778_EEI66237.1 hypothetical protein HMPREF0534_0442 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKWIKQFLLAGLAGLIRPKHNQKYSLKTKIAAVKDYQLNGLASREVLIKYKIRHIFQLKQWIIQYNSDKLTVTYATRKR
VKKMGRKVSFDEKKQIVQWTINHQNNYKEAASKYDISYQRVYSWVRKYLHDHNWEVLKDNRGRNKEKEPTNELERLRKRV
RELEAEKRESEVQIAFAKKLVEIRNREVHRPDDIKRFKK
>SEQF1778_EEI66238.1 hypothetical protein HMPREF0534_0437 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNRELVYWVDLTGPAALDEIVRLTIMDTNDNVLFNHTFNTKLVDWWYSELNGIKPEETYNEQPFSNYKNEIQSIFNKAS
KLITFNSSTFFLEKKGIDLSKKRIDDLADPFRVAGDASDTIDNLCTYYGYDLPTNIYNRTGVEYTKAINYCWHVMESNRK
AQENK
>SEQF1778_EEI66239.1 hypothetical protein HMPREF0534_0438 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKKNKDYTTSVSLTNVTRNKLIALANIRGTTQKQLLSKLVDKEVAHLNPTDKNNFMNILNAIEIKDNFKK
>SEQF1778_EEI66240.1 hypothetical protein HMPREF0534_0439, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIMDKTTAKKHGNIGVDIDVQNEIKALVMVSGHKFIRGYMRDLIDEQVKHLSAGEYEDYRTFLRRIEEQEK
>SEQF1778_EEI66241.1 site-specific recombinase, phage integrase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLKRRKDSKNRVLRSGETERKSGGYQYRWESGDRKRHYVYAKTLDQLRKREKQIEKDNVDGIRLVSMKMTLNDVYDIWEG
LKKGLKSNTFNNYKYMYNHFVRNDLGQYKIRTLKVTDIRRFYNKLVDVRGLKVSSLDTIQLIIHQVLDLAVQDDLVRKNV
SDNGLRELKRMRGIDSIPRKSLTIEQQNLFLNYLQNTDKYKHWYPTFAVMLGTGLRVGELTGLRWEDIDFKNNLIKVNHT
LVFYERSKSSKTGFGINTPKTKAGFRTIPMIKTVREALQKQQTYLQKEQIRSVDNIDGFRDFIFLNRFGHVQNQGPLNKA
LKRIIRDCNFAELDKNPSINNDCLLPNFSCHVLRHTFTTRLVESGMNVKVIQNVLGHSDIQTTLNIYADVTRDMKNQQFN
QLEDFISKDA
>SEQF1778_EEI66242.1 DNA binding domain, excisionase family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQKKDVPIWHKSNLTLEEAAKYFNVGTNKLRKLTNNEDCNFVLWVGNKRLIKRELMDEYLKKQYSI
>SEQF1778_EEI66243.1 hypothetical protein HMPREF0534_0430 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METKDLIGNTFVKKATNSKGTTWKPALRQRWIGKFKGLKEYNRSHMKDNYLIVEVGGYFDGPVFNPDPFIVVGGKRIYLN
YENSIPGLCRIVLVDIQALELSKKYAFNARYQEFDSERDKYNVAKFKSFDEMKKLAKKQYSMNNELPTYDIKMTWEQDKT
SETYGTRHYSVVTNVGLSEQMDEELLKA
>SEQF1778_EEI66244.1 hypothetical protein HMPREF0534_0431 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFSNPNFEWQQSIKMKKNTFSAHFEQANQLSEAMALPITVMHSDHQVGVFYSTQSYNKLLKQIKEMKQEILILKKINRG
>SEQF1778_EEI66245.1 hypothetical protein HMPREF0534_0432 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKDPSGLLIGHYTPTSAILAEVTHLSNSFDHKFKDDVNSKDSSIKLMAKQIIDTVTVQSALGHSQKEILNFTNNGIYAA
KKGIYTDVVQIDTHSQLPTFMYYLGLMDKKHEQLFLRKKEIENMPDYKSDPKLIEEREAIKLELNIYCSTNDTGKGRYVN
RLAAMYSGMNFIFDSMHYWGLSNVLNCVNDGYILQIKDDGDFNKQYQDFKQQWQSEFPLLTFSKKHWKYAIINGTQDYIL
INNSNDYKCRSSQLSTKAFYHQATGKSLDKLKQSEIDNDAFKYAQEKEKVAMMVLYNNLFNNQEPDLYGSNEKLEDLNET
KEILIKAGVVNASFLPEKQHYYSFTPDLENSDQDNDYINQLTKRVLDGQIFMSTELLRNRINLLKQLIKVKEVNPDDYAN
TNHVVMVNSFVPSIVDEIEKNQSIKNWVKYEVEKIEKSDEDKLYQYNLLALTAQIYANEHEENPNSILELVNKLRTTNYL
KKLDMGEIIANDPRTLIVDGQLMVKDDKNIYTAKSSVVNHLLKEHFNRQQKQHFTSEKNNVLALLEDKKYKDSLEQGFKS
DYQSILLDKNGNIKIDSPFKHKISHHVNVNYNPSIVNDPAYEQLNSFLSHLAPNQTKQLKAMLGLIPLQGTDIMKEIRTF
FILKGVSGAGKSTLAQLLKGIFDDENQSESNIISSAQNVNKALLDEHYVDLNDTKKGKIMLWFDDFQSNSKTNIITANAG
TVINGAITGVTQTGAAKYEKEHAVKLPSLIVIATNSMPQITQEGTAARMFVIDSPSILRDRSIKAKGKTISISDFVNNSK
VKEALFYLIMQEASKILKMNEKQRANLFDRNHSAATNLSRLSDSFLTFLEKNEITAPYDFIGMQTIKLFEVYKQQSNSYN
VSYRSFTNQLEMLGLVLKRKNFGGKTYQKVICANSTQLTSAKMKIMRDDFEVYPDCVEKWDSFKQEFIGRLKTWHHGFSE
LKEKYDKNKDTIMFKPFDFSERG
>SEQF1778_EEI66246.1 hypothetical protein HMPREF0534_0433 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFNEYNNPANPDQPRGFIYKQWKDYKKKIGRYCLIPNEIIQYLPLLNGPELNLYMFYAINADNTFGNSFYSIETIAQEL
NVSAKTINNWNNKLIDLGLITRVQPIEHKSAEAQLLPLTSFIARPSSSNLERTRNQLEKANYKITDDLHLVIFHKNNKLT
PLKFTIYYRDGPSTVKDNQIKRGNSKLSNRNTDSKNEGPKWLIAALQEPNYELSETDKNIINKGNIPWKNHESGQVAWID
HKNYFTLLIKNYVENENDDAKLLDTLCSFATKNDILKFRKNYRHCKIRV
>SEQF1778_EEI66247.1 hypothetical protein HMPREF0534_0434 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLSKLKKKYINKDSKDYLTFSGRVFFKYNLCPGFVLCSLFFLFAAMVDHVARKGDLELVVFFAVLAIIAWLIGARARNYS
FTNMLQNDIQEDNIEKLIIELKREREKRINSVIICIKWLLWIISFLIVDSFADDIRQLFSLHTLTSYVAIIELLFLLMFL
LFVFQKWVYKLTLIFKGIIKYVTIFIKYLVNNGMFVSGYVDLTVIERGLYQKKCIS
>SEQF1778_EEI66248.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEYGYARVSTKGQSLDDQISQLKEVGISSSNIYSEKFTGTTIKRPVFDELTSKVKNGDTITVTKLDRLARNTREALNIL
DPLMSQGVKFNVLNIGMLENSTIGRLVKTILLAVAEMERDMIVDRTQEGKRYARLHKKDYHEGRPKRMITPHYQAAYDYL
LNHTYKDTAKAFNISVSTLQRVKKQVEKNAS
>SEQF1778_EEI66249.1 hypothetical protein HMPREF0534_0436, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKYGYVSGWLKDNISKQDDFEHQAKILLNMGIPYDHCFADVFRNKNKERYQLFKFLTKVAKEGDILIVPSLTCLYSNIR
ELCCLMYIVEDTGIIIQSSDMDLSDDSDSSNWILASQLAHLDYLHYLRQKHASKAVKKTKYETILNVGGRHKRVITPIYR
QAYSYLQTHTYHETQKKFHLSKSTL
>SEQF1778_EEI66250.1 hypothetical protein HMPREF0534_0427 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGELEKLKQDCIVKQKRGLHIIIASIVVWGGILAVELLNVPVLTKNLSVFVCTALLLPISYFISRLINVDFQNKTNPLTK
LGMLFSMNQLLYLLIAMWIYPTIPNKMLMVLAIIFGAHLLPYSWLYNSRAYFISSIVISILALLVGTNFKPFILASVMLT
IVVAFCITLILENHQLD
>SEQF1778_EEI66251.1 transposase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSHNDSILNILGIKDKNIKIISVEEAEHNNDSVKEYITLITATLSYPINRCRNCGFPTVNKDGFRKTHVRLASLNGRRYE
LELRKQRYKCKSCHTTFGAITNLTKENQTLSSDLKNQIMLLARKGLSGQLIAEMCHCSPSSVRRTILERMEPHYRVAKLP
KHLCFDEFRSIKSVMSFICCDAETHQIVTKLQDRLSPTIVDYFESRYSK
>SEQF1778_EEI66252.1 ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHSSKIKNMIITIVAVLGIVVGWQMVEPQQVSAAEPTYTFATNNTFEPFEIQDSKGGYSGKNPGIEIEMLKKIAKHEHFK
YELKSMSFNGDLQALEAGQVDAVIAGMSVTDERKEKYDFSTPYYTSGVVMAVAKDSNIKSMSQLKGKTVSAKSGTSAALF
LKNNQKKYGYKIRYFDSSNTMWNDVKTGNTAATFDDGPVLEYGIKEGVPLKVVTKKPIDAQPVAVGYQKGKNLELQKKMN
DGIKWLKDTGQMDQIIDKYTKSDKTTKDSATDRTILGLIRANYPALLRGLWMTIELTVVGIIFAMIFGVILGVLGIAQNK
FANAVSSTLIYIFRGIPMIVLAFFIYMGIPNVIGHKVPLFLAGILTLTFNEGAYIGAIVKGGFESVNIGQWEAARSLGLP
YSKALIKVIAPQGFKLMIPSLVNQFIITLKDTSILSAIGVMELTQTGTVIISQNMEGFKMWLIIGTMYIIIITLLTWLSN
YVQKRMA
>SEQF1778_EEI66253.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKNYKVQVKNLHKSYGSNEVLKGISLDVKPNEVVCMIGPSGSGKSTFLRCINKLEEPNSGHIYIDGYDIADPQVNINKV
RENIGMVFQHFNLFPNMNVLENITLAPIQLGKMTKEEAEKDAMHYLDLVGLADKAGADPTKLSGGQKQRVAIARALAMKP
DVMLFDEPTSALDPEMVGDVLEVMKRLAQEGMTMIVVTHEMGFAKQVADRVVFFHNGDIREQGTPEEIFDNPQHPDTKNF
LDKVLNI
>SEQF1778_EEI66254.1 hypothetical protein HMPREF0534_0392 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPFNWIQLSANARFSVNQLLEVTHYYNDYSNFVKFKLLKVSR
>SEQF1778_EEI66255.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDEKQQQKLERSLKSRHVTMIAIGGAIGTGLFLGSGTAIHQAGPSIILSYLIVGIFCFFMMRALGELILADTSKHSFIDS
VKEYLGDRMEFVAGWMYWACWLTLAMADLTATGIYLKYWFPNLPQWVGPLIIVILLMLVNMVNVGLFGELESWFSMIKVI
AILALIAVGAVLLVMHGHVEGRPVTLSNLVNQGGFFSTGPMGFLMSFQMVVFAFVGIEMVGLTAGETKNPDKDIPKAINT
LPVRIGLFYIGSMIAMMSIYPWFHIKTTSSPFVQVFAAIGVPGAAAILNFVVLTAAMSATNSAIFSTSRSLYSLARSGNA
PKRFGELSAKAVPNHALTFSSLILFITVILNYIMPAGIFDVIAGISTITFIFTWIIILVAHIKFRQQNPKGVANFRMPGY
PITSWLTIIFFLAVLVILLFIDSTRIPLILSIVIFALLAYGYGFLKKKN
>SEQF1778_EEI66256.1 nucleoside transporter, NupC family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYLIINIIGLIVFLGIGWLFSKNRKEINWKTVGIMVVLNLLLAWFLVSSAAGRAGVKAAADGFAWIVNVSAKGTVFALGD
WYTPKNLNFICSALMPILMIVPLFDILNYIGVLPWIIKWIGRGLSFITGEPKFESFFAVEMMFLGNTEVLAISGMQLRAM
NKERNLTIAMMSMSCVTASILGAYIEMMPGQYILTAVPINIINSLIAVSMLNPVKVPAEDDTIEKVGAEVDSDKREPFFS
FLGDSILGAGKLILIIIANVVAFVALAALIDAILALFWKDLSLESILGVIMFPFSWLLGLPVHQAWMLSQDMGMKLITNE
FVVMGKVTGEINSYAPHLRAVLTVFVTSFANFGTLGMIIGAFKGLVDKENNDYIASNIGYLMLSGILVSLLSAAFVGLFV
W
>SEQF1778_EEI66257.1 Inosine-uridine preferring nucleoside hydrolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTKIIMDTDPGIDDAAALTMAINDPSLDLKLVTTVAGNVTADKTTANALKIIHFFGKDIPVAAGAKQPLIKPFEDAARI
HGESGMPGYDFGDDYGKPLDKTAVEALHDAIMAEDEVILVPTGSYTNIALLFSEYPEVKSHIKQIVAMGGSFSGGNMTSA
AEFNVFTDPDAAKIMYNAGVPIVTVGLDVTLKALLTADTIEKLGSLNKTGEMLHGLITHYNDGNDQGRPMHDVNTIFYLL
HPEAFTTKDMWVDIQTDGPAIGATVGDIRAAYHDGKTNAKVCLDIDAEYFNKWFLEEVSKMK
>SEQF1778_EEI66258.1 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNIMIAGAGVLGSQIAYQTALSGFNVSVYNHHIDTAERRIKALKSDYERDLHLTDKEFQQGLDNIKVITDDIATAVKDA
DLMIEALPESLELKEQFYEEVSGLAPEKTIFASNSSTFIPSQLAPYTDRPEKFLNMHFANQIWKFNVVEIMGTSQTSPEV
IEEATKFAREIKMVPVILNKEQHGYILNSLLIPLLASGLSLWAKGVADPAMIDKDWMISTGAPMGPFGILDMVGLRTAAQ
IERNAYAQTKDESHKEIADKMEQMIQEGHEGKESGQGFYNYPNPAFMDPDFLKH
>SEQF1778_EEI66259.1 16S rRNA methyltransferase GidB [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNPEQFQQALADHGITLSAEQMQQFADYYQLLVETNEHVNLTRITEKDEVYLKHFYDSITGAFAEPRLESEELTLCDIGA
GAGFPSLPLKIAFPQLKVTIVDSLNKRIAFLEALVAKLGLTDVTLIHDRAETFSAKNSPYREKFDIVTARAVARLSVLSE
LCLPAAKISGEFIAYKASAAPEELQQGGAAIKQLGGKVQKTVTLTLLETDEERNIIVIDKIKATPNKYPRRPGLPSKKPI
Q
>SEQF1778_EEI66260.1 ParB-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAFSLFGIGKNNSDNTKNKVVEVKIDQIIPNRYQPRKVFDQDGIRELAQTIDEHGLLQPIVLREYEPAKYEIIAGERRYR
AMKLLKWEKAPAIIEKMSDQETASLALIENLQRSQLSPVEEAQAYRQLMDLNHLTQSQLAKGMGKSQSFVANKLRLLRLI
TPVQTAILDHRITERHGRALLDLDEKQQRDMLMRIVNERLTVRQTEDEVARLLGRPLPSEIAELKAAAKRKELASIEDHA
EETADVEEVPVEKPAEKRRSPKRKTAKKARSKKTQQANDARLALNTIKKSIKLATNEGFEIKMHEKENGDTYQLTIEIPK
KQ
>SEQF1778_EEI66261.1 sporulation initiation inhibitor protein Soj [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGSVIALANQKGGVGKTTTSVNLGACLAETGQRVLLIDLDPQGNATSGLGVEKQNIKQSIYDVLINEVPLEDVIQKTSHE
GVDIAPTTIALSGAEVELTNLMARETRLKDSFGEIRQKYDFILIDCPPSLGLLTINAFTACDSILIPVQSEYYALEGLSQ
LLNTIKLVRKHFNPQLKIEGVLLTMFDRRTNLGQQVNSEVKKFFGDQVYDTIIPRNVRLSEAPSHGLAIIDYDKNSTGAH
VYQQLAKEVLANHGKE
>SEQF1778_EEI66262.1 ParB-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKNKKGGLGRGIEALFAENEVTELTDETVQDIKLSLIHPNPYQPRRTFDKEALAELASSIEKSGVFQPIILRQTDPKIN
RYELIAGERRFRASKIAKQKTIPAIVRKMSDDQMMEIAVLENLQREDLTPLEEAQAYQMLMDKLSLTQAQVASRLGKSRP
YIANYLRLLGLPKMIKEFLNTGKLSMGQARTILGLKDKTKLVPLAQRAVEQNLTVRQLEEIVTQTNGTAKKKEERRTQRK
PIYIREAESQLQSKFGTKVAVAQSRKKGAGKIEIPYTSNEDFTRILELLNITLD
>SEQF1778_EEI66263.1 hypothetical protein HMPREF0534_0401 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTAYDKGDIVMMKKAHPCGTNRWKITRVGADIKIECQGCGHIVMMTRQKFDKGLKKVIEKADQDD
>SEQF1778_EEI66264.1 GTP-binding protein YchF [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSLTAGIVGLPNVGKSTLFNAITKAGAEMANYPFATIDPNVGMVEVPDSRLDRIQELIPAKKIVPTTFEFTDIAGIVKGA
SKGEGLGNKFLENIRQTDAIVHVVRAFDDNDITSVSGKVDPIEDIDTINLELVMADLDAVNKRLAKVQRAAKGRDKDALA
ELEVLNKIKPVLEDGKGVRSIDFSDDEQKIVKGLFLLTSKPVLYVANIAEEDMADPDSNKYMDAIKEHVKDDGEVIGVAA
AAEEQIAEMDEADKADFLEMEGVTEPGLNRLIRAAYKLLGLETFFTAGGPETRAWTYKKGTKAPQAAGIIHSDFERGFIR
AEVMSFEDLDELGSESAVKEAGKLRLEGKDYVMQDGDIVEFRFNV
>SEQF1778_EEI66265.1 hypothetical protein HMPREF0534_0403 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEEQPRNAQAGQRQKQLEKERRQANGNAFSNYDLTRKNEDFMYQLNKQLDRLGVPSDKKDSMLKETIDKLLAGQKKGQT
ARALFGTPTEYAKELKNPKPTPAEASKQSIKLLAIDNMLIFLSIFTFMFGLMFWLSPAAMQTKNAGSSGITAILIVAITG
GLIFGYVATQVQPQIDKNGKRVSKKPLWQRILLIVAGLAAWLIIYMLVSMLPNVINPRLNPWVYIGIGVITFIGDMYFRS
KFHVTGSLYGNRAPRR
>SEQF1778_EEI66266.1 deoxyribose-phosphate aldolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFNGLLRYIRKLMKTHSKLRGDHIIMKLTQAQLAKYMDHTMLKPEATPEMIDKTVEEARKYNTASVCINPYWVKRVHEGL
EGTDINTCTVIGFPLGATSTESKVFETKQAIEDGADEIDMVINIGELKAGNDDAVVADIKAVADATHEKGKLLKVIIENA
LLTDEEKARASKLTVKGDADFVKTSTGFSTSGAKVDDVKIMREAVGPDFKIKAAGGIHSLQEAYDMIEAGANRLGVSASV
QILKEAAKQ
>SEQF1778_EEI66267.1 phosphopentomutase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSYKRVFVIVMDSVGTGAAHDAAKFDDVGSDTLGHVGEYYKGALKLPNLGKLGISNLRDTPIEGVLVADPAIGDYGKMEE
ISAGKDSMDGHWEMMGLPVMKPLSTFPNGFPQEIVDKLEKFSGRKVIVNKPYSGTEVIHDYGERQMETGELILYTSGDSV
MQIAAHEDVIPVEELYKICEYARTLVNGPEYTVGRIIARPYVGPDKDHFTRTANRHDFSLKPIGETDMDRLRAAGYDVIG
VGKINDIFSGEGIDKGYHNESNMDGMDHVDEVMKQDFTGFCFTNLVDFDAMYGHRRNPKGFGQALMDFDKRLGKVLDEMK
PDDLLMVTADHGNDPGFKGTDHTRENVPLLVYSPSMNKPNQSLGLRKTFSDLGATILENFNVEPVKGTSFYKEISND
>SEQF1778_EEI66268.1 pyrimidine-nucleoside phosphorylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRMVDIIDTKRNGGVLSDEQLQFFVDGVVNGTIPDYQISALLMAIYFQDMTKEEQTSLTMKMMESGERLDLSRIPGIKVD
KHSTGGVGDKVSLPLAAMVAATGIPVPMISGRGLGHTGGTLDKLEAIPGFRVELSEDEFINQVAKEKLAIVGATGEVAPA
DKKIYGLRDVTDTVDSIPLIASSIMSKKIASGTDALVIDVKTGTGAFMKTLDQSRLLAKALVEIGKQAGLKCMAVISDMN
QPLGNKIGNALEIEESIDVLKGKGPKDLTELVLALGSYMVVMGEKVQNTTEARKMLEQTIQEGSALERFAAMIEAQGGDP
AVVDNYQLMPQAKYKIPFKADRDGVLTKLSADEVGTASMLLGGGRQKADDTLDYSVGIELHHKLGDHVKDGEPILTIYSN
RQEIPDVEQLLKESIKISDDGKVPTLIHEIIE
>SEQF1778_EEI66269.1 purine nucleoside phosphorylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTHINAKMGDYADTVLLPGDPLRAKYIAENFLENVKQVNSVRNAFGYTGEYKGHRISVQGSGMGIPSMSIYINELVREF
GVKTIIRVGSCGGIAPDVHVRDVLLAQGSSTDSAVTVNTFGSGFHYAPLADFKLLDTAYHVAGKLGIETKVGDIFAADRF
YNDELDMEKLRDYGILGTEMESAGLYLLAAKLHFRALSVLTVSDLIFGDEKATAEERERTFNDMINISLETAIAGK
>SEQF1778_EEI66270.1 deoxyribonucleoside regulator [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNDKNKIELALKVATLYYRDGWNQSDIATELNISRATVSRLLQFGRDRGLVTIKIHNPVAPLHQLEVDLLAKYPSLHKII
IVPGTDDPLEEVGAAGAKYIEQVVEDKDIIGLGWGKTVYQVGLHLKPKDVTGITVVQMKGSMANTNTRNYAFETVNIFAN
AFNTVPQYLPLPVIFDHAKTRELVANDTHIKHILKLGEQSNIAVFTVGTVRDSALLFKLGYFTKQEQLTLQHEAVGDVFS
RFIDSKGQIVNEDINQRTIGIALPELRKKKHSILVAANVAKVPAVHGVLTAGYANTLVIDQESANSLVNFLN
>SEQF1778_EEI66271.1 putative inosine-5'-monophosphate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNWDTKFAKKGLTFDDVLLIPAESHVLPNEVDLSTQLADNLKLHIPLISAGMDTVTEGPMAIAMALQGGLGVVHKNMSI
QAQAGEVANVKSVVVPAGATKAAVDDNNRLLVAAAVGVTSDTFERAEALLKAGADAIVIDTAHGHSAGVLRKIAEIREHF
PDATLIAGNVATGEATRALFDAGVDVVKVGIGPGSICTTRVVAGVGVPQITAIYDAASVAREYNKPIIADGGIKYSGDVV
KALAAGGNAVMLGSMLSGTTEAPGEVFEDNGKKYKAYRGMGSVGAMAQAHGSSDRYFQGGVNEANKLVPEGIEARVEYKG
DVSDIVFQIDGGLRSGMGYVGAGDIPTLIEKAQFVQITNAGLIESHPHDVQITRSAPNYK
>SEQF1778_EEI66272.1 response regulator receiver domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQKGVPLMKILVVDDDKEIVQLLEIYIRNEGYEPISAYDGKEALTKLNTNPDIGLIILDLMMPEIDGMDVIKRVRKDSD
IPILVLSAKTADMDKIQGLITGADDYVTKPFNPLEVMARVKSLLRRSQGEVTNDQPDILNVGPLLINKDSHEVKTIKGDV
IQLTALEFGILYLLASHPNRVFSADDIFERVWQQESVVSAKTVMVHVSHLRDKIEEATNGEKVIQTVWGVGYKVEDH
>SEQF1778_EEI66273.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLTGREKSSLILEGVVTVILLLLLNMAIIVIIQDAIQSNPGVTNGIFMIKQSLKIGPLQAQIWSYQRILIAFLVIIDVW
VVWWRLRRRYHLYQMDHIIAELHYIAQGHLDHRIPFRLKGNQQHVITSVNALVDSAVRSMDDERKIEKSKDELITNVSHD
LRTPLTSIIGYLGLIEDKQYRSEEDILKYTHTAYEKAKQMKTLVDDLFEYTKVQQHGAPVNIMKIDLNQLIEQLTASFEL
EAQHRGIEITSSVIPNPLMIEADPEKLGRVFNNLVSNAFKYGNGASYIRIDARQENDMVVVKVANDGTPIPEKALDHLFE
RFYRAEASRSRATGGTGLGLAIVKSIVDLHHGSVKVTSNEDETAFIVTLPLKQEVKETNQK
>SEQF1778_EEI66274.1 hypothetical protein HMPREF0534_0412 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNDENYAVNYMKFATDKKWDPDDALLVEYYSLAAWSISNMVGGLIGGAISIDLEVVDFALTALFLYMIVMQVQNHLTLVI
GILAAVLGVYFQALTKSTLGIIIATLIASFVGFLIENTVRHHSKHPNSNWFLTKMFRPKITKTTIEDKQAQQKEVKEVEK
LETKIEDVVEHHDEKHEEKKHDDQHPDEG
>SEQF1778_EEI66275.1 Branched-chain amino acid transport protein (AzlD) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEQLLSNKIVYHIIVIILAALAAFIPRYLPVLFFSTRKIPEWFNEWMKYVPVSLFATLVVKGIFLTGSYHFTLFGYPERI
IAALIVIVIAYFTRSMSISVIAGLVAVWLLSLAL
>SEQF1778_EEI66276.1 LysR substrate binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTLDFKQTIAFVNLANTLDYQYAAKKSGITVDELVRTIKALEEELNIKLIRPEGGVVELTEIGAKVLPLIIEIAQKHAK
LLSVVTDYRKKEAEEAIKVTVVPGFANYQAAPVVKKLAQQHKMNIVEDIDPMAQLQQGESELAFISYAGKLPDDFEVLSV
GTDDLVAYIPARNPLSKQKELTLTDLKAEKFLTLNHQNPFAVFVQQVCAAAGFELYSVFEGEKGRTLVNMVALGMGITLL
MEQSISENLDSKVVKVPIVSKVTQNLAFVRRKNVEHTAEQEELWQALKESFEK
>SEQF1778_EEI66277.1 aspartate carbamoyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISKERIQPNLVTVADMDAADAIDLIHEAQAYKAGKQAVLTAPAYAVNLFFENSTRTKTSFQMAQMKLGMNVLEFEAGTS
SVKKGESLYDTVKTMESIGVNVAVIRHPENEYYNQLINHSDLKIGIVNGGDGSGQHPSQCLLDMMTINEEFGDFKGLKVL
IIGDLSHSRVAHSNAMMLNRLGAEVYFAGPEKWYDPTLEQYGTFGDFDELLPQMDVVNLLRVQNERLTTADGQAFDANQY
HQAYGLTLERAAKMKQGAIIMHPAPVNRGVEIDSSLVEAPNSRIFQQMTNGVYTRMAILSRVLRYQGLM
>SEQF1778_EEI66278.1 amidohydrolase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKAVLLTNGRRIYNDELVKTEVLIVDGKIKAIGEHIQAPSDAEKVDLDNGLITPGLIDVHVHLREPGYTNKETIATGSK
AAAHGGFTTIAAMANLNPTCDTPEKFKEQVDRNEKAGLVKILQYSPVTVGRAGKQAVNVAEQYAAGARLFSDDGAGIQDA
GVVYQAMQQLAKVNAPLCDHAQDNQLAQNGVINDGATIAKKLALPGMPAISETAQIARNLVIAQATGVHYHVCHVSTKES
IDLIRHAKQQGINVTCEVTPHHLLLADADIKEDDAEFKMNPPLRQRLDQQACLIGLLDGTIDCIATDHAPHTDAEKQQGF
LKSPNGIVGSETAFALLYTHFVKTGIFTLAQLIDWMAVKPQAIFNLDNAGLLKVGDPADIAVFDIDHQDVIQPDQFFSKG
HNTPFVGEQVYGMTKRTYVDGKLVYLEGEG
>SEQF1778_EEI66279.1 dihydroorotate dehydrogenase B, catalytic subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQETQRLAVELPGLSLKNPIIAASGTCGYGQEAAKKYNLNHLGSLVLKSTTLHPRQGNPRPRVCETSAGWLNANGLQNVG
ITAATNEKIPWLRKNYPQLPIIASAAGFSEDEYVKVVSEFANTAGVKAIELNVSCPNVKHGGMAMGTDPEVLQRLVKQVV
KAALGIPIYVKLTPNVTNIVPLAQAAEEGGANGLTMINTLTGLSIDLKTRRPALANVTGGLSGPAIKPLALRMIHQVRQV
SSLPIIGVGGIESAEDVLEFMMAGANAVQIGAASFHDPLACPKIAADLPIVMDRYGIKKLTDLWEVRF
>SEQF1778_EEI66280.1 orotidine 5'-phosphate decarboxylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGKILKRFVPMVAIDVATKQEAIDLFDKLMVKPQPIVKIGMELYYGLGQVIVKEAKKRGFKVFLDLKLYDIPNTVHRAM
AAIGRLGIDFTTIHAAGGSEMLIAGLAGLEEGAKEAGVEPAKLLAITQLTSIDEKILHEQQHVDLSLIESVQSYARLAEK
VGLAGVVCSAHEIKAIREVTRDDFLCVTPGIRPTHAIKDDQKRVVTPAQARIDGSNAIVVGRPITQSFDPVAAYQEVQKA
FLNEEEEK
>SEQF1778_EEI66281.1 orotate phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTYSQRVAKALLDIHAVTLSPDQPFTWASGLKSPIYTDNRLTISYPEVRQAIFNGMVEQIKLHFSEADVIAGTATAGIPH
AAWVAQNMELPMIYVRTKPKDHGQGKQIEGVLKEGQKVVVIDDLISTGGSVLNAVRAVNNAGGKVIGVVSVFTYDLPAAE
QNFMANGLKYYSVTDYMTLIKVAKENDQISADHLKSLQEWRKDPLSWSKEQAS
>SEQF1778_EEI66282.1 hypothetical protein HMPREF0534_0420 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGCLIMDGAIFSFNNIFVNTNKLSFTAWQRFAMYEFGMGLPGKLASQFDNLTPSQGLSLVLAHFNANPAPSEKTSMIAE
WQKFLNEEADSLSEKDQLPGIKRLLLNLYDHYVKIAVLDANGDVQNVLKQIGLDNYVDSIVKTNDKESPYLTAVNQLNLI
GANCIGVGTTAHDIENIHHINAIAIGVGDATTLANADYQVVQAGDLRYPMLQKIWEDKQ
>SEQF1778_EEI66283.1 3,4-dihydroxy-2-butanone-4-phosphate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQSQFSTVEEALNQLVNGGYIILADNEDRENEGDLVALGENVNADTIYEMLNEANGLMCVPVSEDIAKHLAFKPMVEHST
DPHQTPFMVTTDGTLEATGVTTGVSAFDRAATIRQIAKPTAQASDFNHPGHIQPLYAQPHGLRDRIGHTEAAIDLAYLAG
KAPVAVIIEVLKRDGTMARRDSLSVLANRVHVPFITINQIIEYLDVKGIDYAADLAKVNA
>SEQF1778_EEI66284.1 Cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFLLIVLKHFYFKGVIMNIIIAERRMRFMLEKTFYKSLLKHSFNIPVKIVFWDGSSVIYGDGTPEVTITFNEKIPMRDIT
KNASIALGEAYMDKKIEIQGSIQELIESAYESAHSFIRSSKFRKFLPKQGHSEKESENDVQSHYDVGNDFYKLWLDDTLT
YSCAYFTDGNHDDLTKAQVDKVHHILKKLDPKPGKTLLDIGCGWGTLMLTAAKEYGLKVTGVTLSEEQYRFVKERIEKEG
LQDVAEVKLVDYRELGDQKWDYITSVGMFEHVGKENLGFYFKDIQGCLADDGVALIHGITRQQGGAYNGWINKYIFPGGY
VPGLEEMIGHIEENHMQIADIEMLRRHYQRTLEIWDMNFNEHRAQILDMMGERFTRMWDLYLQACAASFESGNIDVIQYL
ITKGPSGKNLPMTRDYMTK
>SEQF1778_EEI66285.1 hypothetical protein HMPREF0534_0423 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTNAWKHFIENVKLRRFTVLLLIIVVLWLMRSMMNLILFTFILTYLVVSWVRLVQRWLPRMSTSLIVIVTYVLLIVLLYL
GVTRYLPVLSRQVVKMVNSVVHFYSTHQATMIYRYVSHYISTATIMSQVRHGITIAVSTLTSIGAITVSFVMSLILSFFY
TLELKQMNEFSHSFLDSDFGWFFQDIDYFGKKFVNTFGVVLEAQFFIAICNTVITTIGLLFMRMPQIFALSLIVFIFSLV
PVAGVIISTIPLAMVGYSVGGIRDVVYIIIMIIIIHTLEAYVLNPKFMSSRTDLPIFYTFIVLLIGEHLFGTWGLIVGVP
IFTFLLDVLGVKPIRGAKRIKKEV
>SEQF1778_EEI66286.1 hypothetical protein HMPREF0534_0424 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METVKAGRKSFLPFFVIRTIYVNSLDKVNKNRTYFAKLLKKS
>SEQF1778_EEI66287.1 formate--tetrahydrofolate ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTDIEIADQATLEPITEIAEKLGLSEDEIEQYGKYKAKIDLNVKPLPDKKHKLILVTSINPTPAGEGKSTVLIGLGDALN
QLNYQTTIAMREPSMGPVFGIKGGATGGGYSQVVPMEDINLNFTGDLHALTSANNTLAALIDNYIMRDNAMNLDPRRIIW
KRVEDVNDRALRNVVTGLGGPMAGVPRETGFDITAASELMAILCLSTSLHDLKERISRIVVGYTYDKEPVTVGQLNFQDA
ITIILKDALKPNLVQTLDHTPTIVHGGPFANIAHGCNSVLATQTALNLSDYTVTEAGFGADLGGEKFLDIKQRVLGKHPD
AIVIVATVRALEYNGGAKLADLNDENLDALKKGMANLNRHIKNMQLYGLPIVVAINHFVSDTDKEIQMIKDDCAKQNVEA
ILTDAWAKGGKGTHDLANKVVELADSPSEFTHIYDVQVDDLQTKLEKIAKQIYGAKEVSFSRKAQNQLKRFAKYGWNDLP
VCIAKTQYSFTDDQKQLGAPTDFTFHIRELVPKIGAGFVVALAGNMMTMPGLPKEPAAVNMTIDDNGKITGLF
>SEQF1778_EEI66288.1 hypothetical protein HMPREF0534_0388, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYQNYTIGQTEFVLNYNYGLPQNHVARLISDFVDSIPQDVLLEDSRAATGRPSSHPAIMLKILLFAY
>SEQF1778_EEI66289.1 serine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDIKKIRQEPDFYKEKLATRGVKSEEIDEVIALDKKRRELLQQTETMKAQRNEASKKIGEAKRNGESADAAIKETRELG
DKIKELDAELEVNDAELHDKMAHLPNVPHDGVPVSLTEDGAVELRRVGKVRDFDFEPKHHWDIGENLGILDFDRAGKVSG
ARFVYYLGLGAQLERAVYNFMLDEHMKEGYTEVLPPYIVNADSMYGTGQFPKFKEGVYQVNGEDMTLIPTAEVPLTNYYR
GEVIPTEELPVYVTALTPSFRSEAGAAGRDTRGLIRMHQFNKVEMVKYTKPENSWDELEKMTANAENILKKLNLPYHVIT
LTTGDMSFTASETHDLELWMPAQNKYREVSSCSNCLDFQARRMHTQYRDENGKLQYVHTLNGSGLAVGRTVAAILENYQN
ADGSVTIPEVLVPYMHGVTKITKENAVPFRNKVNK
>SEQF1778_EEI66290.1 carbamoyl-phosphate synthase, large subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPKRTDIHKILVIGSGPIIIGQAAEFDYSGTQACLALREEGYETILVNSNPATIMTDKEIADHVYIEPLTVDSLSRIIRQ
EYPDAILPTLGGQIGLNLAVSLSKTGLLDELGIELLGTKLDSIDEAEDREKFKELMNELGEPVPASQTVNTVDEAVEFAH
QCGYPVIVRPAFTMGGTGGGICHNDAEMRTVAKNGLELSPVTQCLIEKSIAGYKEIEFEVMRDSADNVMVVCCMENFDPV
GIHTGDSIVFAPNQTLSDREYQMLRDCALKLIRALKIEGGCNVQLALDPQSFQYNVIEVNPRVSRSSALASKATGYPIAK
MAAKIAVGLTLDEIKNPVTKTTFAEFEPALDYVVCKIPRWPFDKFTQADRHLGSQMKATGEVMAIGRTVEEALHKAVRSL
EIDEKDLFSAEAHHAPTDMLEKKLRYPQDDRLFYLAEAFRRGYSLKQTHDLTKISPYFLDIVKHLVELEDDLSTKPFDAE
TLIISKKYGFSDATIARLWHTSSQEVRKFRKQNEILPVYKMIDTCAAEFASSTPYFYSAYDHENESQRTKKPSILVLGSG
PIRIGQGVEFDYATVHSVKAIQRAGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEQPVGVIVQFGGQTAI
NLAEGLAKNGVNILGTTVDDLDAAEDREVFDKVITDLNLKQPIGLTATTHSAVIKAAEKIGYPVLVRPSYVLGGKAMETV
YNQEELQQYLQQNASITADHPILIDAYLEGRECEVDAICDGKDVLIPGIMEHIEHAGVHSGDSMAVYPPQHFDDDIKQQI
VTATEKLAVALKCIGIMNIQFIVHNREVYILEVNPRASRTVPFLSKITGIEMAQVATRVILGQSLADQGFTNGLYPEPQT
IHVKAPVFSFNKLANVDSYLSPEMKSTGEVMGTDTTYEKALHKAFSGAHVQVPNNGKILFTIENGDEEDILPLAKRFAQI
GYQIFTTPQTASHFKDNGIHVHQKISNIDELNRLLKAGQIDLVINTMRHDYEQDSLGFQIRQSTIAQNVPLMTSLDTVNA
LLHVKEDQCLEAITIK
>SEQF1778_EEI66291.1 carbamoyl-phosphate synthase, small subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLVYVISGRVLQERMKLMKRYLILEDGTVYTGEGFGATKATLGEVVFTTGMVGYQEAITDQSFANQILVFTNPLIGNYG
INSEDNETLYPQIKGVICHHVARVPSNWRMTDSLPNFLAKHHIPGLQGIDTRELVRKLRQYGTLRGIMTDNVTDIKDKLE
QLKQTSPTQNIISKVSTKESYANPGTKRTVVVLDFGMKNSILRELNKRNCNAIVLPYNASISEIMVFNPDGILLSNGPGD
PLEMTTIAETVAELEKHVPIFGICMGHQIFALANGAKTYKMKFGHRGFNHPVRNLKTGKIAFTSQNHGFAVDPSSIDDTD
LQITHLEVNDGTVEGLQHSKYPAFSVQFHPDAAPGPHDAEQLFDKFMALIDSNKEVLTYA
>SEQF1778_EEI66292.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSQDESVVLNQDQETSTSGLPILPKSTIWMINFGFLGVQIAFTLQGSQMSRIFQTIGANPNNLGWFFLLPPLAGLIVQPI
IGYYSDRTWAPKLGGRRLPYLLIGMVIAVIVMILLPNSGSFGFGYGSLAALWFGAITVAFLDLSSNMAMQPFKMMVGDMV
NDDQKSYAYGIQSLICNTGAVLAAIFPFLLTWWGISNTAKKGVVPQSVVISFYVGAVILVITCLFTIFRVHEYDPATYAR
YHGISEEDNKKGGNWFTLLKHAPRVFWNVALVQFFCWFSFQYLSTYAVGAIAKNVWLTTDASSAAYQAAGNWYGVMTAVQ
SIAAVVWSYVLAKVPNNHHKAGYAFSLLLGAVGYTSIFFIHSQNALIFSFVLIGIAWASMNTYPLTMVTNALSGKHMGTY
LGLFNGSICVPQMVASLLSFGLFPLLGSSQVNMMLVTGISALLGAISVLFIKETYQA
>SEQF1778_EEI66293.1 transcriptional regulator, LacI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKPTIKDIAQRAHVSTATVSRVLSKKAKSYRPETAAKIEAIAKELGYKKNLAAAELAANSSMLIAVILNNTQTNFSNDII
AAIQAETDKAGYQMFILYAGNHNARLLNQAISVALERHVAGILLVATSLDEQAARTLQESNTPCRLVSVYDETDPRYIGF
KFTSSNNEEIGYSAANYLIERGHSRIGLAGIDHSSTGKQRLHGYQRAMTEHGLIPHMGWVEYGDYSFGPQQNMLKTLTNK
NLDAIITASDMMAVGMIREAHLLGLDIPKDLSFISIDGTFLCDITIPTITSVTQDFYQMGLIAVRSLLNDDDSQFIPIHI
TPRNSVRLLGKKH
>SEQF1778_EEI66294.1 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTQTKQHEQDVDVWVGKRFPLTIRRLGVNGHGIGYYKHKVCFVPGALPNEVVVAEVTRVLPRYLEAKIHRIRKKSRDRVT
PRDEYADIAGGFELENLAYQQQLKFKRQVIIDSLEKFQPYGYRNYDVRPTIAAPEEYGYRNKAQFQIRMVNGKVAAGLYQ
PNSHTLVDMETCAVQMPRTMETVRAVTKMIEDLQIPVYDEKNNSGIIKTLAVRESWSTGEVQLTFITNSAKLPHKRELLE
RIEKELPAVVSVMQNVNPGDTPLIWGDKMIHLAGKDSILESLMGLDFKLSARSFLQLNPEQTEVLYEEASKALELDKDDT
LIDAYAGIGTIGLSLASRVKSVCGMEIIPEAVADANENAKLNNITNAKYEVGKAEEVLPRWQEEGLNFDALVVDPPRTGL
DDQLIKQILKVKPRKFAYVSCGMASLARNLRRLTSVYHVDYIQPIDMMPQTARCEAVVKLSLRNGNKE
>SEQF1778_EEI66295.1 hypothetical protein HMPREF0534_0383 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEMKNRVINFRNDNLAKLIVNYYGNSQLSVHITNNMFFERVKYSRITM
>SEQF1778_EEI66296.1 flavin reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLEFIARHFSDDDIDVIDIRQVPMFNENYKGKIPEAVADIDRRVSSADAVIIASPEYNHSVTSALKCVIEWLSYEVHPL
ENKPVMIIGASTHDQGSSRSQVQLRDILISPCVNAYIFQNEEFFMSDAANIIDKDGDITNETTIHFLEKCMREFKHYAKA
INRMVAEKKEAKK
>SEQF1778_EEI66297.1 flavin reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKILALVGTNANFSYNRILLKYMKKHFRQMADIEIAEISQLPPFSVDAPLSEQTEVWKLKQKVKAADGVIFSTPEYDHGI
PAALKSTVEWLSYKTDVLKRKPVMVVGVSYGRQASARSQVQMRQILVSPDCDANLLPGNEVLIGNASHSFSKDGRLINAE
ARDNLENCFTHFVEYIQIFENANKEGLDMSVKQPTISEAYINFPTGRLTLKEVQQIFSTIPFEIDLIDSTDHFAWFSDKP
NREHVRNVASLGETVQECHPPLAVPAVMKIINSFRNGEKDVVTRPLWMNGHRSLIQYYALRDVNGHYLGTIEFTGSVEYI
LNLFENGAWSTDGNTGASKHENANDNSEEADSVDASTGASESSDDDNTDSVSEVVATPAPAANDDTDADATTGVSDAGSV
DANDDEADATTGASEN
>SEQF1778_EEI66298.1 ApbE family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNELMAQRHVMTHHALGTRINLTIFGNKYFSLLKKSMDLIDHYEDQLTVNRNESEVMSVNHGAGKTPKMVSPTTFDLIE
LAVKYSRENFGFNALIGPLVKLWKIGFAGAHVPSDAEIKERLKLIDPYKVLLNREARTVYLEEPGMELDLGGIAKGYIAD
RIRDLWIEAGVPAGIIDLGGNLLFVGKSPRRDDGQWIIGVQDPQLHRGENLATVLEPACSAVTSGIYERFLIKNGRRYHH
LLDPRTGYPLETDLSSVTVFTDQSVMGEIEAKRLFFNGEPITGWEVRPGNRGAIFIHNDESMVNVGLNKN
>SEQF1778_EEI66299.1 hypothetical protein HMPREF0534_0387 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQVNPTWNYYKAKVKATLSSDEGKAIYRRRKFDVEPVFGHMKRDFGIRRTHLRGQRAVENDIGLALMALNLTKFGQSISR
LATNFINNLKSGL
>SEQF1778_EEI66300.1 hypothetical protein HMPREF0534_0372 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQNPFGNNNNDNQNPFNLNNLPLPPNYAKIVNDQGDIRIAKVGFSWTTLWFGPLPALFRADYYNFILMIVLTLDYALVAL
FFGLNALFQFPWPSVFFGFFYNMMYFRHLFTKGYRPADQRSRELLTRARYWKGN
>SEQF1778_EEI66301.1 glycosyltransferase, group 1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLFFLNDNIQRNKSGIEHAQIKRLHLVEKYHQPAKIVTRQYSNELHLVTAEAGIDDRNFINLFDYFQEACEVPQKNIRIK
DIPVNPHWERKADGINYNYYQNGKRILYIRRRSDTDRRVINIQYFDHYGKLLKVSWFDSRGFISVEQLYDWDGKMATENY
YRPDGTLAIQLAHQHDKRGREIKTYHLFNYHGRDYQFSGFDQLTRFFLDELVTDKQICGEGPVGFVVDRVYELGWAVLHM
KHRVFRVLQLHNDHVNNPDDMLHSTLNYNYDWGLKHLQDWDGVIALTPQQQEDLQDRFGKFGVKIYRIPGPIVPAAVIDK
HHVPFKKRTKKQVVMVARLSPEKQQDHLLKAWPQVLAAVPDAKLDFWGYANDDFDKTLNKIVKEEAINSSVTFHGYTDNV
NSVYEDAQLLILPSRAEGLPLSLVEAQSHGLPIIANDIKYGPSDVVIDQQDGLLTKNGDIDGLAQAIIRLLRDQEQLAQM
SENAYADSERYSEPNVMKLWNELVADMKEKGEE
>SEQF1778_EEI66302.1 glycosyltransferase, group 1 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYFFVNQYLLSSNSSVEHAELKRLALFKKHGGEAKLVTRDFDLVLHDTIKKFGLTNDQIVNMYDFFANTTDYQGEKLHTE
DLHLPIDCQVGTGNNYREVKDGDRLVCEVYFAAGTIGQVNHVDYFDLAGNMTLRQQYDIRGFKAADEFFGEDGQEYYARY
YRPNGETYLERYFVKSVENTPINSLNVLRNYQGQDRFFDSLEDLFIFFLDELNKANGEDNVFIADRPAVAIKPVQSMMTK
AKKFLWLPMNQVNDGQNLINGPLNPMLQGPVTTDADKWDGVIVMTAKQAEILQQQIHNAVPIYVINGTPVLANYARINEA
DRTPGQLIYVGRLAEDKQTSQLINMFAQIHQQVPESKLTFYGYGTGEDMDNYKKQVKSLGLDGSIEFAGYQISLDEAYDQ
AQLFVDASRIDAQPLAMGEALNHGVPVVSYDYLYGPREMVISGKNGEIIPLNNQGQFIQTVVKLLQDRDELQSLSTGAYD
NLDELAEEKTWKQWQQLSAI
>SEQF1778_EEI66303.1 hypothetical protein HMPREF0534_0375 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNYQAMNFYYGLLNLRAGFFKADLCEILMAIAQSVPDKNQQSATAYHTVEENLSQDHKQLNRDQVAFGSFYEDGHILHN
VKINTQSDFFLDPTREDTVKWHVSFTVAKDVRPADQFTVQLSPNLMVAPNGHPEKPIPDFSDQNGTVIAMGAYDQDKHEL
VYTFTNYVTEHRQIIGELEGELAVDPLTTPENEFGLECFISVDDYRKDFTIDIDYPDLANDMFLGISSRMMHFDKDQQLF
EDIIYVNPAQKDLNHAYIVFNTSDLVEELSNAIVKPSTMRIEIYRNSRGLKLPQSYGVNFQRLRDITNRFPVVEGDHLVE
TPYTMSFADNKMRLNFGADHTNDSYIIRVIGQYNGELDGTVRLRARLFGMDQQNVYMSNSTAATATGTSMIARGHAISKE
KLAEETADTTENLKQDEYFVNVEEPLESTAVEEVREEADIPSASDSQEQFPSSQGEEDETPIEEKQAEAPAVSGAVGGDE
LSISFDVTPQTAPAEVIEEAESSDDKEEFTTSEESAVSESAVEIKVSEEETSAAPLPMPGRRPPRRHSRFQNTIRSNHSL
RHLRRF
>SEQF1778_EEI66304.1 alpha amylase, catalytic domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENNHWWNKSVVYQIYPKSFQDTNHDGVGDLRGIIDRLDYIKELGVDVIWLNPIYKSPQVDNGYDISNYEAINPTLGNMD
DFQELIDCVHERGMKLVMDLVVNHTSDQHDWFKESRKGKDNPYRDYYIWRDGKEGEEPNNWGSYFSGAAWKYDDESGQYY
LHLFAPEQPDLNWENPKVRHSVYDMMNWWAAKGVDGFRMDVINLISKPDGFI
>SEQF1778_EEI66305.1 hypothetical protein HMPREF0534_0377 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDLFSNICMQPSRMIVGDMVNNKQKNFAWSWQQVFSNGGGILATILPFIFTMFGMSNTAKRGVVPNTVIWSYLCAAAVLL
FTGLWTVFNVKEYDPETYAKYHHIDPEEQNKSVSLWKLIKTAPRAFWEINLVQLFSWFAIMYVWTYTTGTCARNIWHTSD
VTSAGYQAAGNWYGILTAVYSIAGIVWGLIYAHAKAGSRKKWYTFGMIVGGLGLVWMTFVTTKTTSIIAMIMFGIGNFSI
NTIPFTLLTSSLNGKNEGAYLGLFNVGICVPQIVASLCSFFLFPLVGHNQPMMLLLGGISLLIGALAVQAIHEGVTVKEV
>SEQF1778_EEI66306.1 hypothetical protein HMPREF0534_0357, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
PGDVRINAIVVIAASLTFILEKPLLTIILLLLLVPIELAPVIIVVAFLVGRIIKLFPASE
>SEQF1778_EEI66307.1 glutamate-cysteine ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFSRIGQLIFDNEAVAKTSDFTMGLEIEMQRVDEDGNLSLEPYPSAIGDEKTNPWITNDFLETMAEMVTPSAQHALDAMH
YLYVINNTLRSALAPGELLWPLSMPPRLPKDKTKLRLAKMGPKKEAYLKEWAKRHGYSQGTPCGAHINLSIDQHIIELVL
NAFPERFNSKREVRNYLYTILAQGFVRYRWLLTYLYGASPIVEENYFEPGKELPHPIRSVRQSQYGFGTKFTGDFTNLDR
YIARIEEGVKAGILTSDYEFHGPVRFKGNTDLKKLPEHGIEYLELRMLDLDPSSSVGVRTGTLRFIRLLASYLIMQPPLK
ENEVEEMLVTADKMNEVVAEENPQATCRYQAKARAVLKSLERYANQIQLGPEYSEVLEDLEDRVENPLTTPSAKLLNYVK
NGSLTEYALRRAKRYQQAAQETIHPFKGFEDGRIYTADELRKELTL
>SEQF1778_EEI66308.1 peptidase C26 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRRGYMHPRIAIPADTLTEATNIINERNAAFAPRPLIEAIIKSGGLPVILPSVAASLAPSYLDLFDGIIFAGGSDVDPTF
FNEEPHQKLGPTYLKRDQFEISLATAAFNAGKPMMGICRGMQVLNVALGGTLYQDLSENPHQTLKHSQDAPGNFPSHHVN
TDKASRLFNLVGPRPYVNSRHHQSLNQIAEPLHVTAWADDQVPEAVETINSDQILAVQWHPENMFKHYDYSRAIFADLIT
RAKKAAK
>SEQF1778_EEI66309.1 oxidoreductase, aldo/keto reductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLELTNINSTFNLNNEVKIPCVGYGTFRTPADVAEQAVKEAIETGYRHIDTAAVYGNEEAVGKGIKDSGIKREDLFVTSK
LWNTNRGYEQTKKAFQETLDRLQMDYLDLYLIHWPANEKQFGDDAAKINAETWRAMEDLYNEGKIRAIGVSNFMPHHIAE
LMKTAKVAPAVDQIEVHPGWPHTEEIKYLQAHNILVEAWAPLGGQGAKVLTNPTMIQIADKYQKTPAQVCLRWILQQGIL
PLPKSVHKERMISNQNIFDFELTDEDMRKINLLPNLGGQCADPDEVDF
>SEQF1778_EEI66310.1 glycerophosphodiester phosphodiesterase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNAYRAFRQYSCQFRKNWLEYLILFGGLDILNQFLVIPFFRWITTFVLQAGEIPFISYQNIVIILTHHPLVVVILLIEL
ICLMVIIYGEFMLLLKGFCGIGLPEFSWRRMFRQTKETLSLLNFGSLILLLGYFLLIIPFADIIFRTPLLAKIQVPQFIV
DYLTRNAWLIGGLTLFYLLMTMIGIRLILTMPLMAYQHLRLRAAMSQSWQMTSKLRWLKFLIQIVLMTIIVGSITVVFYL
MIYILQVVLDLLPGKLSLITAIFNLSILQLGGEVLAVWAGTIILLVVVNPLTSISELATTPEHPSRGLLTSFMLVFLVIG
LATLANNTFYMMGTGIKRPITISHRGVTEKNGVQNTIPAMEKTSKLKPDYIEMDLHETKDHQFVVMHDENLKDLTGVNKT
PHELTLKQLTRLTARENGYHAKVASFDQYLAAAEKYHQKLLIEIKTTPHDSKQMLQNFNRRYGKRILQDHDQVHSLDYSA
VTKLKNINPRLTVLYIQPYNLGNPQGVADGFSMEYSTLNQDFITQAQWQHKPVYAWTVNDTDLMKQTMYNHANGIITDNL
GELNAAIKDFTGKQSYANRILNYIIVVPTSGGIEP
>SEQF1778_EEI66311.1 hypothetical protein HMPREF0534_0362 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MESTFRLRRSIIAAMLLALTLVLGRFFLIPIPWTHGNVNLCDAGVFIAAMLLGPGAGTIVGGFGGMFLDLISGFPQDALF
SFAAHGLEGFISGWIYKKYGNTTWGKWTAILVGTIVMIAIYFICNTVMYHVITGFLSLGSNFIQGMIGGIVALIVIRQLK
KHHVG
>SEQF1778_EEI66312.1 pyridine nucleotide-disulfide oxidoreductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVIIVGCTHAGTITATQILQNHPETEVTIYERNDNVSFLSCGIAVYLSGDVGDPDAMFYSSPEQLAAMGATVHMQHNVT
DIDPKTKTVTVTDLVTGETKTDHYDKLVDTTGSWPVIPPIEGVDGPHVYLCKNYHHAKELFNVAKDAQRIVVIGGGYIGV
ELVEAYTRQNKDVTLIDGSPRMLHKYFDREYTDRIQQEFVDHGAHFAFDQRVTGFENHKNGVTVKTDKGNYEADIAILCV
GFRPNTDLLKGKVKMHDNGAIITNEYMQSSDPDIYAAGDSTAVHYNPTGKDAYIPLATNAIRQGTIVGTNLFGNTMHDMG
TQSSSGLNLYGTTMVSSGLTLENAKEAGFDAAAVTVEDNYRPEFMPTTTPVLMTLVWDKKTRQILGGQFMSKHDVSQSAN
IISLCIQDKHTIDYLAFVDMLFQPHFDRPFNYVNILGQAAVKKQAELEK
>SEQF1778_EEI66313.1 GMP reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTFDYDDIQLVPNKCVIKSRKDADTSVKFGPHTFKIPVVPANMESVIDEDLAIWLAQNDYYYVMHRFNPETRAAFVKMM
HEKGLFASISVGIKDDEYNFIDQLKSEQLNPEYITIDVAHGHSDFVIKMIQYIKEKLPDTFVTAGNVATPEAVRDLENAG
ADATKVGVGPGKACITKLKTGFGTGGWQLSAIRWCAKAARKPIIADGGIRHNGDIAKSVRFGASMVMIGSMLAGHLESPG
HVINIDGKQYKQYWGSASEVQKGAYRNVEGKQMLVPYRGSIKDTLTEMQEDLQSSISYSGGRDLEAIRKVDYMIVKDSIM
NGDF
>SEQF1778_EEI66314.1 adenylosuccinate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSSVVIVGSQWGDEGKGKMTDYLSQEADVVVRSQGGNNAGHTIAFDGKKFALRLVPSGIFAKDKLAVIGNGVVINPPALL
KELHYLQDNGIDISGLRISSRSHITFPYHILLDKCQEEAKGDHKVGTTKNGIGPTYMDKVSRVGIRMCDLLEKDTFKEKL
ERNLAEKNELFTKLYHVDPINFDDIFESYYEYGQELKQYVTDTAQIVNDALDQDKKVLFEGAQGVMLDVDQGTYPYVTAS
NPIAGGVCTGVGVGPNKIETVVGICKAYSTRVGAGPFPTELTDEIGDQIRETGHEYGTVTGRPRRVGWFDSVAMRHARRV
SGISCLSLNLLDVLTGLKTVKICTSYKLDGKQIDYYPASLKELERCEPVYEELPGWDEDITGAKKFEDLPINAQNYLKRV
SELSESPLATVSVGADRIQTIIVKDPWELAHK
>SEQF1778_EEI66315.1 hypothetical protein HMPREF0534_0366 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMTQPTLTVEKHYLNWPLNRPLNQADIMHELGVHASDENGQDLTSKVMMNLTQVDVNKVGEYPVMLNVMDNNGQSAQASI
TLNIQPMRTQNAPKETATSPKSRRGWLWVIIVIVVILCAWWAISSHNRQAANQAATDSQQSSQISNNSSSISDLTKDNQR
LASQVAELKGATQQYQKDHDQQALESRLDKIQSQIQDLQNQVQSNSVKQDLNQVNETVNEVRENPDNGTKIVNNLKNKGD
FQEIWGNISQEVQKWLDEFAN
>SEQF1778_EEI66316.1 phosphoribosyl transferase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAHEILDGSSMQRALTRITYEIIEQNKGVDNLVFVGIKTRGVYLAKRLAKRLNQLENVEIPVAALDVSLYRDDRHVPDYT
QEPTVKTDQLDIDITNKHVILVDDVLFTGRTVRAALDALMDMGRPNRISLAVLVDRGHRELPIRPDFVGKNIPTAMNETV
HVAVEEYDGHEDVTIEHN
>SEQF1778_EEI66317.1 hypothetical protein HMPREF0534_0368 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYSVSKYDILFTKQMFDQRFHMRNIILNPTKRQVHKINKRIEEVYRPRQKQALIVFTTNISNNPIYKISLDTFPALGTG
ISMTMVSEIPVDDISKEQYILLLYALYSHWKKLPLVFRGFTPKQVRWFQKKFGTRVFNEHSTVDWWRKLR
>SEQF1778_EEI66318.1 hypothetical protein HMPREF0534_0369 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRYDWISEFSINRAGHLMPNWFAVFGMVFGFVILPLILFWLTRRERAENDERVK
>SEQF1778_EEI66319.1 hypothetical protein HMPREF0534_0370 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDIRKINMLNGIKEGFITVLDTKKLSECTTNDIVNSAEISKKLSTTITKINKIFSMKLKMIYWEV
>SEQF1778_EEI66320.1 hypothetical protein HMPREF0534_0371 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGLKEALVIDREELKDVKHLPSADEIKELAEVAFNHTLAFCNENKHALSNLLSSNGDMQFYQMIIEVANNEFDARVPYL
FGDINIKEANVKSSLPFSFIKTLYINTIVNLLMLWGAAPDSLSINEIKSIAGLIQTKSPVELIQIYKSYLN
>SEQF1778_EEI66321.1 OsmC-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKYKVTATKTTTGMQVSAGTRGFEITFDEPESTNTGMNPVEILLASFGACQAITAQALAKKRNFDLRAFWVTIEGDLGR
EDVADGKNVRKFTEIRYQPHLRSSESDEDIKKFLADVAAKCPVENTLTYGTKFVQDGFVKVD
>SEQF1778_EEI66322.1 4-phosphoerythronate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKILMTSVRDDEQTAINEYAKEHNIEIITTPKLIDDAVELTADVDGLVIQQRSKVPADIYEKLHTNGLKQIATRTAGFD
MVDIKKANENDLVVTNVPAYSPRSVAEFALMQIFRLLRKTYRFDHQVAENDFRWFSDEQSTEIHTATIGIIGVGRIGGTL
AKLLHALGATVLGYDTNPRTDLDGIVQFVSKEELLKQADVVSLHVDLNPTSKDLLTANDFEMMKPTAGLVNASRGPVVNT
ADLVAALKKGTIAAAALDTFEGEETVAATNRREQGLDDQPLVKELHEMDNVILTPHIAFFTNLAVKNMVDISLDDVMAIL
NGEKSSHEITL
>SEQF1778_EEI66323.1 aminotransferase, class I/II [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPATKKEILNRLNNNFTKLTPGGIREFDYQVSSIPDIIKLTLGEPDFNVPAAMKQAAIDSINANDSHYAPGSGTLALRQA
IAHFMQDRYQLEYDPENEIAVTVGATEGIFASLSTIINPGDEIIIPTPTFPFYMAVTKILGGIPIEVDTSSDDFILTPAR
LQSVLEEHPNAKGLVLNYPSNPTGVTYTQDQIKALADTVKSTNLIVIADEIYSELVYGATHTSIANYIPEQTLILNGASK
SHAMTGYRIGFIAGPQELMKSVSAIHAMLVTAASNPAMAAAVAAFGTNEGKTATQEMKDAYEQRRDFVVNNLQKLGFKLI
NPQGAFYVFAKIPEQYGNDDLKFATDLANEGKVAVIPGSFFGAGGQGYVRISYATSMENLTRALDNIAAFINKED
>SEQF1778_EEI66324.1 hypothetical protein HMPREF0534_0340 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRIDIKHYLEVNHLTIYQVSKRSGYGYTTLHKSFNKPQSSSTSLNLRDLDALARAQDKSMWKVLKELEEHYLE
>SEQF1778_EEI66325.1 ATPase family associated with various cellular activities (AAA) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAQNPMNPFDNDMNDIFNQLMGGMNGFNSDNRRYLINGREVTPEEFAEYRRTGQLPGSANPQQGGQPGPQPNAGKDSILH
KLGRNLTQEAREHELDPVIGRNKEIQETAEILSRRTKNNPVLVGDAGVGKTAVVEGLAQAIVSGDVPAAIKDKEIISIDI
SGLEAGTQYRGSFEENMQKLVDEVKKAGNIILFFDEIHQIIGAGSTGDSSGSKGMSDIIKPALSRGELTVIGATTQDEYR
NTIMKDAALARRFNAVTVNAPSKADTVAILKGIRDLYERHHNVKLPDDVLQAAVDYSVQYMPQRALPDKAIDLIDMTAAH
LAAKHPARDAKAIEKDIEAEEKKQKAAAKKEDYKAAQDAKEKIADLKKQLSENSESEKVTATPEDVAKAVEQITGIPVSK
IGASDVERLKDMDKRLEGKVIGQDKAVEAVARAIRRNRAGFDEGDSPIGSFLFVGPTGVGKTELAKQLALDMFGSKDDII
RLDMSEYSDRTAVSKMIGATAGYVGYEDNGNTLTEKVRRHPYSIILLDEIEKANPQVITLLLQVLDDGRLTDGQGNTIDF
KNTVIIATSNAGYSNDAPVKMGRNEDEEDLIKKLTAYFRPEFLNRFNAIVEFHSLTKEDLKQIVDLMLAEVNRTLAKKGM
HVKVTDAAKQYLIDEGYDEAMGARPLRRVIEREIRDKVTDYYLDHLDAKNLVAEMKDGQLVIVDAKDASKDDSKEYTSPS
EKKDEEKNDKKEEDKKSDEDKKDEK
>SEQF1778_EEI66326.1 hypothetical protein HMPREF0534_0342 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRNSNTNNWRSTALVAGAILTAGVVTTTSTTDVHADNSQNNAQVSNDQVTYDQVRATADQQLAQLQSANDSKEAQQATAN
EQSNAADLAQTNAQIDQLKASHAALEQEQAGAIAQAQASTAASIEAQTSAANAEYQQQINTQQQNEATQRAANDQQYAQA
VNQAAENQQAVADINAQYQKALSDAANTQTSQAQAAANNYNSAVAKENDTYQGKLSAQQATNAENIKNAEASLASATANA
NKPYEVATTNDVAVTGRVAKPQTDVKVPAYVTKYGIHLEVRGYNGAIPVSDYTYPEFANTYYGEYPDSAVITNKAAESTP
HDISEMPLDFQPGLLSYDAKNDHSEKVSADGLTADQVQVLRALALSWENGFRNNVFQNYREFYNVVNKNDGFVNVAPVDL
VSTDFTDNIANQVVANRTKYNIDNNSHTVISSGMPAEATYTSVINDATKNLKKNLTSEFNGKTVYTDVNENLTTMQAGTP
TLLNYAINLYNSMQGMYYGELVNPTHIGGHAVNLLCAGVRTVGIGFQKLTDEMTAKNGSGVSDRKNPSYAVTFDHVGFNI
DYDANLTKEVQNRNVWGTSTVDAQLNTIKTAQYHVNKVPGTKTVTPTATDVQKATASEQQKLADVKAQAQQSLDALASAH
QASLNKLAQQYNDAKAQVKANYDVAVTKAASVRDAALKATGVVNLQAYKAQLDSAYQNLVKADQVAAQKLAADRDAKIAN
IKKVENVKLDAKINELVPSVDPQIKQLQDQHQAVIAHGDAVLAELKAENKAAYNKLAEQFNVQLAAIQRRENAKRANEVR
LANNTVVLPSAVKVANDGNIDTVAFPTASNPLQAETTGRVQTVSAPSIVKTATQTPIAVAPVVTTVNHAAENTVKSNESS
APVVTQTTAVAATTNNGTQTSVASTADNKATKADNSEKSVVKAGTVAKKQTPAKKSESSQKVDQSSMSIVALAATALLGT
LGITYSSKKRHN
>SEQF1778_EEI66327.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSYNRNIINQGRIIMAEIYLRRAQLQDLTAIMKIIDDAKELLKKNGSPQWQNGYPDQETFTQDIVMQTNWILINDNKVVA
TATLQLTPEPTYRNITQGQWQQPDEPYATIHRVAISSNYRGQGLSKLLFSNLLTVGQMQGIKNFRVDTHRSNKAMQHIAE
NFNFKKRGIIKVNDQNNPERLAYELNLGSHHKLTRINNNFMQPLIDKL
>SEQF1778_EEI66328.1 phospholipase D domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALTWTIIWWCLLLVILVNEIAAIYTVFREKRDIAATWAWLLVLTLIPGFGFILYAFFGRKLPHKQLARIKSQTQLKLKQ
ALERQKQQFINMPKPKDQIVQIYRRTIMLFQSIDDSFLTRHNAVNIFTNGNALFKKMFDDIAAAKKSIHIEFYTIYNDQI
GNELRTLLEQKAAEGVKVRVLYDSWGSMGVWPSFYDHLREVGGYAAPFLMSRSNFFDFRINYRDHRKIVVIDGEIGYVGG
FNVGDQYLGRVPKFGPWRDTHLRIVGGGVYGLQRRFIGDWNASMKKDEDKIVHYHPYFQPIRVHGDVALQTVSSGPEAPL
EKIKMGYLRLINAAQDHIWIQTPYLIPDDSILDALKVAAHSGIDVRIMIPSMPDHAFVYRATQYYARELANHGVTIYYYQ
KGFLHAKTMMIDGRMASVGSANLDFRSFKLNFEINAFIYNQNTVDDLERIFVNDIRNCRVITPAMFAEQPRWLKFKQTVS
RLLSPIL
>SEQF1778_EEI66329.1 putative ATP-dependent nuclease subunit B [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGTLGFVLGTAAMDHQQVLIDQLVDQIKNASADESFYYLVPNHIKFETEINVLAGLRDRQGFSGSDRFASSRIQVLSFSR
LAWYLLRDTPAFQKQHLSKIGMAMLTSQVVQEQASELRLYASEVKQPGFIQKMTAQLEELKNANITADDLTDIISRVKSA
NDPAANQAWLAKMHDVEIIYHAYEDRLRDRYIGNSELYRQLVSYLQKSPEAAKMHFFIDRFAQFTANEQQVVDALITNAA
STTISLTLDRGYPDQNHPNPQELPPKNNLFYSSAMQFHRLWKFGQMHQKEVKVLQNVAFATTPRVGAELQQVDSYFKRYA
SEPIGPSEREDLSCPPNIQFMTTTNRMTELNNVATKIRQLVASGKYRYRDFLILSRHLDGYQTMIEPVFAAHNIPVFNDH
ERLMDNHPLVTLLTTLLELPQRGYRTADIIQLLKTWLLVPRTGTGDLMGLSDFQAAVFATENWCLKQAIEGKSAWTTNDP
EKIKQLWQAPGTNLTDPKYAQSRLKKLNDQLALVKDFVANHLLPVFDQFKQAQSGQELATALYQFLAAMGVTDRLYAWQQ
YQSTRDLDLARQPQQVWTTFCQILQEYVEILGQQELRDGTSEVLADFSELLQAGFAAAQYSQIPATLDQVVVSETGIVQS
ENRKVVFMIGSTDDVMPEMQESDSLLTDQDKDVLSAYLDEDFQYLPGTAIDQLIDEPFIHYTGFMNAKEQLIFSAPQTDS
DDKELSISPYMHDMARYFGQPVCEYPLATSKAGQENAIDFVSAPLATINRLVEVSRQIRDEQGVGIDRQPVMPVGWQTVA
ESLVKLAKQWQQSADTKVQAEGISLGQRLSLVAAGFHYQNKIDSLGNKLAQALYLRTAPDDERGRVLYASISQLQDFYIN
QYEYFLKYGLRLQKRDELTLSNDRIGTFFHKAMETFVTTIRENNSSFADLAHKDNQMQRDQLIDHALVTAQKNQPTLLRL
INSSAQAQFQYQQLTAIVKTMLITLCRQAEYTGSQPVKTEVQFGRIGNQQPGNLGSLDYPLKDNHHIYLRGRIDRIDNLK
QGNDNFLTVVDYKSSNHLFDLTSAYYGLSLQLLTYLNGLQANLAELETNNSRLAGALYLRLNNPTIKAAELKKSSLDDLK
LKEHQYKGILLNDPQLLRELDKSLDKQAFLYPLKEYKNGKIKANKEALLVTPQQLDWLQNMNKELVINAGNQILSGDLKL
NPYRLLTGSNRRTGLDYSDFLDVFQFDNMLDQQNYRDLNPNLAKEAFDNAVQDDDEEDKK
>SEQF1778_EEI66330.1 ATP-dependent nuclease subunit A [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAGFKPTPAQSKAINDRGENILVSASAGSGKTAVLVNRTIELIKEGQSIDRMLLVTFTDAAAKNMRDKIRAALQKIVQDS
ANPKDLRDRMSNQINRLVAADISTIHAFCLKLIKRYYYLINLDPQFRLLTDETERLLLQEDVWHEVSEELYKNAEEKVPG
RASFSELVLNFSSDRDDQGLNDLILRLYEIANAQPDPEKWLQKLPDNYDLGSGSLLESNFYQQQLKPLVIEKLNQFIQDY
RELVTRASDNGLDQAAEVIKSDEELMHQLLSSLGGITVSDVCQMMAQQKFGSFRGRPAADDPRIDVFKDIQKQRNQLKKQ
WEQTVSIYLGKQEAQEPIAKEELLTELTTFRDQFTALLSKATESQLDAKTVDSLQKDQQMMQEFLDLLQPPTWNTIRDLF
ANAKFARMGGKPKDDELAEEVYKSLGSTRTGIKKQFDQLVDRFFNYREDQFRLISTNAQELLRELSAVTINFRRRYQQTK
LNRHVLEFSDLEHYAYAILTPPDDQPNWQTLVKDLQNHYQEIMIDEYQDTNRLQESILMKLTSPERKNLFMVGDVKQSIY
RFREADPTLFLGKYQNYRQGNDGEAIVLGENFRSMTNVTSFTNILFEQLMDREVGEIDYDEDAHLKYAATYYEENQDNKV
HPTEVLLYDANALDPEKEDVEHEDDKLAGEFRMIGMRIKQMVENQELIFHPEDGQMHPIQYGDIVLLERTKAINNSLMEE
FNKLNIPLTVHDVESYFQATEVRVMMSLLKIIDNPQQDIPLAAVLRSPIVGLTNQELAFIRLQNRSVDYYAALQSFMGNY
QRKALHHQSLLTSEQVSALYEKADHFLGLLRVFRQTAQQQTLVDLIWQIYDQTGYLDYVGAMPGGHQRQANLHALYQRAH
SYEQSSFKGLYQFIRFIEKMQEHDKDLGVAPTQLTANTVNVMTIHGSKGLQFPVVFLIDATHGFNKGAVRENTVVDAVAG
VGIRYMDDQRVIYDTPQRQAVIEEIQRGERAEDLRVLYVALTRAEQRLIITGSFNEEMRTQSLVGSWQRWQKAYQSKNLL
IGPQPRITANSFMDWVGLALARYPEFNAQQLSRGNVTLEKSTLADTKVTGLAADPHFIAKTYTALDVSDGLAKIGQNASA
NVTEKNNTVATDASEQKIDQILRYRYPHLVATKTTAYQSVTDVKRVFEDPDTRDMARWDYDQQQRVKTQGIYLNNNFDVP
AFIQQTTHEPVATEIGTATHLVFQKLPLDEGPINVEFVDQEIQKLVGKKLINPVVAARINRKGIVDFYQTEVGQKILKHP
ADYHREVPFSMIMNGHELFKGVNVSDDERILIHGIIDGYLKNDEGIVLVDYKTDHLNKDYRDFDLARIKDRYRGQLELYK
EALNLMEGIPVVQMGLYLLELGEFVLFTKEGD
>SEQF1778_EEI66331.1 transcriptional regulator, LacI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATIKDIAQKAGVSVSTASRALNHNPRISEKTRQQIATIAKEMGYQPNYNAQNLTRGESNMVGIIFPVTSDTAPANPFHI
DLLRGISMALKPIHYEMVVAIAPTTADLLQSVKSMVEQSKVHNFLVLYTVKDDPITNYLRQNNLNFVVIGHPDKAQDRFV
DNDNVAAGQAATDYLMDHQEASHPVFLQSASNWVFEQDRHQGYEQSMQNHHLPALSWRYSPTGTAVKDFIKQHPQIDSIV
CVDDLLLVRLIRQLQEFNLPTICFNNSRLMGMLINQEEKVDLQPRKLGQQAVELLFNPEEQFRIVDFKINS
>SEQF1778_EEI66332.1 acetyl-CoA C-acetyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEKVYIVAAQRTPIGKFNGQLASKSAVELGAIAIKAAVEKAKLSGNDIDQVLMGNVIQAGTGQNPARQASMAAGLGEQVP
AITINDVCASGMSSVNLAASLIRAGQANVIVAGGMESMSQAPYVLPKARNGYRFGNGTLLDAMQSDALNDVYGGYPMGIT
AENINDKYQITRRQQDEFALLSHQRAVKAQKAGYFDSEIVPVEVKQKRTTVTVKVDEAPRPDTSLVALAKLKPAFKSDGS
VTAGNASGINDGGAALVLASESAVNQLGLTPLAEWQGSTVVGLDPALMGLGPYYAINKLLKNQQMAADDVDTYEINEAFA
TQALVCQDLLHLDPSAVNPWGGAIALGHPVGCSGARIIVTMINEMHWDNHELGIASLCVGGGMGEAVLLKKI
>SEQF1778_EEI66333.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSQEKSTGAGLPTLSKSTIWMINFGFLGVQTAFTLQSSQMSRIFQTIGADPNNLGWFFILPPLAGLIVQPIIGYYSDRTW
APKLGGRRLPYLLLGMIVAVIVMILLPNSGSFGFGYGSLAALWFGAITVALLDLSSNVAMQPFKMMVGDMVNDDQKSYAY
GIQSFLSNTGAVLAAVFPFILTAWFGVRNTAKRGVVPDSVIIAFYVGAALLVVTSLFTVFRVHEYDPATYAKYHGISEDD
NKEGGNWFTLLKHAPKAFWTVTLVQFFCWFAFQYLWTYSAGAIAKNVWNTVDATSAGYQAAGNWYGVLAAVQSIAAVIWS
YVLAKVPNKYHKLGYGGSLLLGALGFISVFFVHDQWTLIVSYTLVGIAWAAMNTYPLTIVTNALTGKHMGTYLGLFNGSI
CLPQIVASLLSFALFPLFGHSQVHMFILAGIVMALGALSVATIKETYAE
>SEQF1778_EEI66334.1 glycosyl hydrolase family 65 central catalytic domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGIEISMKRTFDIAPWHVATHKWDPQDKRLQESMTSLANENLGMRGFFEEGYSGDHMEGIYLGGVWFPDKTRVGWWKNG
YPKYFGKMINAVNFMKLIIKVNGEQLDLAKQTPKDFKLDLDMKRGVLERCFTVEIGGTEMYFNFERFVSVTQKELVGQRL
HIKNRGDSDAKVEITSMIDADVYNEDANYDEQFWNVLGKSADGEHAELTSMTKKNDFGTPQFIVGMKTTSKTNLDHVDDG
TDEKHAYNTFAGTVAAGKEVNFEKRSIVMTSRDYDSQADIEKNLDVLGDQLDNQSFDDLLDPHIKEWADRWVKSDVEIEG
DEGAQQGIRFNLFQLFSTYYGQDYRLNISPKGFTGEKYGGATYWDTEAYCIPVYLGVANPEVARNLLMYRYKQLDGAFVN
AKEQGLDGALFPMVTFNGIECHNEWEITFEEIHRNGDIAFAIYLYTKYTGDKSYVLNEGAEVLTEISRFWADRVHYSQNK
NKYMLHAVTGPDEYDNNVNNDWYTNLLCRWTLQYTLDILDQVDEKVAKKLNVSEDEKRKWKGIVDNMYLPYDKEKDIFPE
NDGFMDKDLTPVSEIPSDQLPLNQHWSWDKILRSPYVKQGDVIQGLWDFIDDFTKEEKKNNFDFYEQFTVHESSLSASVY
SIIAADIGYEDKAVELYERSARLDLDNYNNDTSDGLHITSMTGSWLDIVQGFAGMRVRDGQLHYAPFLPKKWDSYQFRQM
FRGRILKVKVDKHGTKIDLVSGDPITIDLDGKKLELK
>SEQF1778_EEI66335.1 beta-phosphoglucomutase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFEDLKGFAFDLDGVIADTARFHGQAWHQLADKVGTEWTPELADALKGVSRMDSLELILKAGGHENDYTQEEKEALATE
KNDNYIKLVETLTPADILPGMKDFLDELKANGYHIVLASASKNAPKVLKYLQLTDYFEGIVNPANLSHGKPDPEIYQEAA
KLMDLPADQVAGLEDAQAGIESINRAGELSIGFGADLQDADVKFDKTGDVSLAAIKAQMN
>SEQF1778_EEI66336.1 hypothetical protein HMPREF0534_0352 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRKIVIITTIILISCLWVVVAINFNRPSFQPVQDETQSSQQPRPKFTDQQIGVLAGLAISPDWLKQNIAANQLVYGIVK
PSDTVPAGVNDYSYLVAADDQDGTAIFFKVEGQTVIIKYTSQRNAKLKTKDLTLAQLRKEFYQTRSQKKQVDNYVAGLRT
E
>SEQF1778_EEI66337.1 RelA/SpoT domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIYGPYEQILSNILSLTTDRIKELNQQTVQDKQPKLYEHLIARVKTSESMAEKCQRKGYPVSTESALRKCRDAVGIRIV
CNFIDDIDRCLCQLRQADWCEVIKEKDYITNAKPNGYRSYHVIIDEKVPYQDIEGNNPGHFYVEIQLRTIAMDSWASLEH
EMKYKHNIKNPERIGRELKRCADQLASCDVQMQTIRQLINSSEEGE
>SEQF1778_EEI66338.1 response regulator receiver domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRILVAEDEQQLSHVLSSAMTASGYQVDIANNGQEAVEQAKENAYDVIILDIMMPVKSGLEALKEIRATGNRTYIMMLTA
MGEEDDKVTGLDAGADDYLTKPFSLKELLARLRSRQRRDDSYQVDVLEFGDLTLNGNDQSLESHNSISLTNRENRLLQYF
ILNANKELSANELINHVWDENETADQEDLWINICYLRQKLQAIQSQVTISGEKTGPFMIAC
>SEQF1778_EEI66339.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLGGQGMIQRFRYKFIAISTAALLFVILTIVGSICTLTYYQSHQEIERVLTILVNNDGQIPRKGIRTTDNSQPQFSREGL
HQYRYFAVLVDNKNQVTEVQDDHIATVTPQDARAMTDRLVRRKVHSGQLLYRGVNYAYKIRNKNGEKVIVFLDESLLMAR
TRSLMHTGLILGIIVLVLYTIVLTLYSRRAIRPIIEAEQRQKEFITNASHELKTPLTVISANNEMQEIINGENEWTTSTK
QQVTRLTKLINNLVSLARMQEQPTLTMLPVNVSQIAGDVASSFKSVISTEQKQFNVQIDEGLVANADENTLRELLNILLD
NANKYCDPQGEIDFTVSSSNHSKNIVITIANSYKDGKSLDAKKFFNRFYRVDESHTQGKKAGFGIGLSMAQYIVKQFKGK
ITAKYTNGKLAFIVTLKEVGK
>SEQF1778_EEI66340.1 hypothetical protein HMPREF0534_0356, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFWRLKIGIYAVVWSLIIGMLTAAYLNLVNWVIDLVWHQYLDPAVSSKWYPFLVCIPLGFLIGFLNERWGNYPLTIEQV
LTQVRLKGQLNYHNWWKSFILGLLALGAGGNIGPEASTTVLTSSMINWLGDRMRWATSMRQKVSLWYGKMQTQDLARAPR
FSQLFKNKYQRVFVISGLVGIGIVGAAIVFKLFPEEGVFGMHHRIINWEWINLLTSIPTIIIGIAFGWLFVHLENWAALI
INAKISKIWQGGIFGLILAISSLITSDILFSGEFRIVPFTHEAFNHSIIFL
>SEQF1778_EEI66341.1 phosphatidylglycerophosphatase A [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVGKMNNPRFKYPDTKAYEFVVHRLEERGVNLEELAKIVYETQKSFEPDLTIKECQKFLIDTMHKRELLNSTMVALELDR
LTEEGKVDEPLASIIKNDAGVFGVDETLALQIANIYGTIGTTNFGYFDRVKSGIIAKFDHDKVHVNTFVDDILAAIVAAV
CGKIAHQYA
>SEQF1778_EEI66342.1 ABC transporter substrate binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEIGMKRIMGYIIIGIVVIGGYFGLLRLHQQTTKPVVGILTMMHHPALDQIQKGLVAGLAEEGYRNGKNIKIEYQNANGD
QGNLNTMANKLVNDHAKVIVGITTPACQALANATKDIPIVMGGIGDPVGAGLVKNEKHPEGNVTGVHDVNPSEQQIALVK
KFIPNIKTLGVIYTSSDTSSESQYRTMVKAAHKLHVNLKTYTIANANELNQTSQTMLSKVDAVIVPSDNTIAGSMGVLVK
NADAVNKPVFPSADTMVKDGGVASISLSQYGQGKAAGKITARILKGEKPGQMAVNNYHHGEPVLNLKQARKLGIKVPADF
QREAEQHGTVFK
>SEQF1778_EEI66343.1 rRNA large subunit m3Psi methyltransferase RlmH [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNFVDKLWKVVDILNIKIIGVGKLKEKYFKAGIAEYAKRLGRYCKFEIVEVPDEKAPESLSQAEMDEVMAKEGERILDK
IKDREYVYALAIKGKERSSEEFAKEINKLTTYGHSDITFVIGGSLGLSPAVLKRADAQISFGRFTLPHQLMRLVLSEQIY
RAFTIINGLPYHK
>SEQF1778_EEI66344.1 hypothetical protein HMPREF0534_0334 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAGICILVMQGKASAMIVNEARLTLPNEKRIEYDEFERYQFRAKQLRTWWQVKRPKYKIDWSFYHKKRGYWD
>SEQF1778_EEI66345.1 flavin reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIMKKVGIIVGSVRPNRRSMQVANWLKVQLKKSTKVQFDIIDLKEVNLPMMDEPKIPYLGLYVHEKTRKWSELVQSYDGF
VLVFPQYNWGYPAVLKNAIDYLGKEWQGKPVSLVTFGGHGGSQAQIAMKLVVTGLKMAALPVDLQVNLLPDDSTSTADRK
LNTYNTQAALLKTAFENELS
>SEQF1778_EEI66346.1 alcohol dehydrogenase, iron-dependent [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIMESYSNAMRRVFLMNRQFDFLMPSVNFFGPGVIAKIGDRAKMLNMHKPLIVTTEGLSKIDNGPVKQTVASLEKAGVDY
AVFTGAEPNPKIRNVQAGKKMYQDENCDSIITVGGGSAHDCGKGIGIVLTNGDDISKLAGIETLKNPLPPLMAVNTTAGT
GSELTRHAVITNEKTHLKFVVVSWRNIPLVSFNDPMLMLDIPKDITAATGCDAFVQAIEPYVSVDHNPITDSQCKEAIQL
IQTALPEVVANGHNIEARTKMVEAEMLAGMAFNNANLGYVHAMAHQLGGQYDAPHGVCCALLLTTVEEYNLIACPERFAE
LAKVMGFDTTGLTLYEAAQKSIDGMREMCRLVGIPSSIKEIGAKPEDFEMMAKNALKDGNAFSNPRKGTVEDIVKLYQKA
YDGIY
>SEQF1778_EEI66347.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDYQIRLATINDLPAIVDIFNQAIPLQVNDESAPIEVADRREWFMQFDNTHPIWVATMDDQVIAWCALEYFYPHPAYDHS
AQIAIYIHEDYRQQHLGRDLLTYAQKQIEDHLDIRTVIAYIYIENQASYHLFTSCGYKEWGKLPQISEINGQMRSLYMMG
RYFNE
>SEQF1778_EEI66348.1 signal peptidase I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKAFREAMSWIIPILIGLIIALVIKQFFFQIVRVDGPSMQPNLQNNERVFCLKTAKIHHGSVVVFDANGIDPQVSVKTDY
VKRVIGLPGDTVSSKNGNIYVNGKKINQDYISKSQRTTGTGNWTLRSISVQNSWLKNNGATKVPKGEYFVLGDHRSVSND
GRYWGFVPKSKIDGVVKIPSWTGTKTTRENVNKEWQHFYDK
>SEQF1778_EEI66349.1 hypothetical protein HMPREF0534_0296 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEQPFVPLILGSDFNAYGMARSMYEKYGIKSQLYARQPLAPTRYSKIVELHYNEQLQSPEVFTKVLIEAADEFAKQGKK
TVLISCGDDYTELVAKNRKELSQHMFCPYADYDEVATLTDKEKFYNVCEKYGLPYPKTDILKPDLDYKNYKSPFEFPIAL
KAADAVQWHKGNFEGYEKAYIIKTPERLAEVLEIIYEHSPYNGDLVLQEFIPGDDSNMRTINCYVDKDHKVKMMCLGHPL
LEDCNPANVGNYVAIMPAYDQQIYDNIKNFLESIEFTGFVNFDLKYDRRDGQFKVFDLNPRQGRSSFFVSLNGYQLATFP
VEDYVFDSLKDQETIYGNKDESNYKLWLGVSKKTFLQYAKNNEIKKQAEKLIKEGRYGTTFHYNKDMNFMRWLMEQRINH
NYQKNFEKYFVEKK
>SEQF1778_EEI66350.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELHITPALALLCEHHLLDHVSNLTDFTATSVSYDSRKVKSGTLFFCKGNFLPKYLASAKEKGAIAYVAEKEYPEGEGLP
AIIVNDEQKAMSLLGAAFYDYPQNDLFIIAITGTKGKTTTAYFADHILAQSTANHIALFSTLDRILGNKPEDEFKSDLTT
PESLDLFHDMRAAVNNGMTHLVMEVSSQAYKKNRIYGLKYDVGIFLNISPDHIGRNEHPTFADYLHCKEQLLVNSAKCLI
NAETEKFTDVYYTAKATTQPEDIFLFARRGANIELPDNAQIDFEYRNDLEDLHESEFELTALTEKAKQLNLDGRYKTSVP
GDYNEGNAVAAIIASGLAGASANDAVETLNHVHIRGRMEMINSNTHGTIYVDYAHNYASLKRLLAFLKRQTNAGKVTVVL
GATGDKGISRRPGFGKALTEEQPDEVILTTDDPGFEDPMTIAREIDSYIDHDKVKHIQFEMDRETAIKKAIDGSGNDDIV
VLAGKGEDPYQKINGEDVPYLTDVKIARDYINDLER
>SEQF1778_EEI66351.1 asparagine synthase (glutamine-hydrolyzing) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIREFKRKKRKFIMCGIVAFVDNEKPQIKDQLIQKMKDRIIHRGPDAEGQYVDDDVALGFRRLSFIDVKSGNQPIFNEDS
SKAIEFNGEIYNFEELREELISKGHTFKTHADTEVILHGYEEWGKDVVNKLRGMFGFVIWDFKTKEMFGARDHFGIKPLY
YAKMNGTFFVGSEIKAFLDHPNFKKELNKEALKPYMTFQYPVTQETFFKGVYRLPEGHYFTYKDGQFEMTQYWDENFEPE
DETFDEAVNKIDEVVKNSVKAHTFADKGIKVGSFLSAGVDSSLVTALMRPDNTFSIGFDSTYDETKQARELAAKMGLKNT
DEKLTNEEAFHAFPMIQYYLDEPDSNPSVVPLYFLNKLAKDNGYKALLSGEGADELFAGYIDYGFNTKVKFIRWVTDQLK
KMPRERRYKFAKWLDGKHFHGQEHMYRNLAPARDTFIGQAYIFSPEEAADYLQPEFDCGPSIADILNPLFDKMEDKDIDE
VAKKQYVDLHRFMPGDICLKADKMSMANSVEIRVPLLDKEVMKVAETTPTKYLFNYKDTKWAFRMAANRHLPEEWATRPK
MGFPTPVRAWLREKKYYQEVRELFEQDFVKEFFDQEKLLKLADDNFEGKVDGRRKIWTIYTFLTWYKLYFIDNFKPDESG
IDRAQKAATTEV
>SEQF1778_EEI66352.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSSEALQTSDAVQYEAGSYDVIVVGAGHAGSEAALAATRMGNKTLLVTINLEMVAFMPCNPSVGGPAKGIVVREIDALG
GEMGHNIDKTYVQMRMLNTGKGPAVRALRAQADKHAYHRAMKQTIEEEPNLTLRQATVDQLIVEDGVCKGVITNTGARYH
AKTVVLTVGTAARGKIIIGELQYESGPNNSKSAVKLSENLEELGFDLERFKTGTPPRVNGKTIDYSVTEEQPGDEEPHHF
SFDTPDSAYIPISEQLSCWLTYTNEGTHAIIRENLSRAPMFSGVIKGVGPRYCPSIEDKIVRFADKPRHQVFLEPEGRDT
DEYYLDGISTSMPEEIQQKIVHSIKGLENAEMMRPGYAIEYDVVAPYQLHPTLETKIIKNLYTAGQTNGSSGYEEAAGQG
LIAGINAGLRAQGKEPFVLKRSDAYIGVMIDDLVTKGTKEPYRLLTSRAEYRLILRHDNADFRLMEMGHNVGLVSDERLA
KMEEKKRQVAAEIKRLEEIKLKPSDDKVNEFIEAHGDNRLKDGIAAADLLKRPYFDYQTLAEFIPAPEQELDRHVIEQVE
IQLKYAGYIKKEEVKVERMKRMEAKRIPDDIDYGDIDGLATEGRQKLEKIRPETLAQASRISGVNPADIAILSVYVRQGT
FSKKDRK
>SEQF1778_EEI66353.1 tRNA modification GTPase TrmE [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHGLALFLLERSKVAMANSENDTIAAISTPVGEGGISIIRISGDDAVKVAQRIYKGKDLAKVATHTINYGHIVDPDTDQE
VDEVMVSVMRAPHTYTREDVIEINCHGGLLATNRILQLVLSFGARMAEPGEFTKRAFLNGRLDLSQSEAVMDLIRAKTDK
SMKVALNQLDGDLSRLIRNLRQDILDVLAQVEVNIDYPEYDAVEEMTTKLLKEKAEDIQQRIQGLLKTAKQGKVLRDGLA
TAIIGQPNVGKSSLLNSLLHEDKAIVTNVAGTTRDVIEEYVNVNGVPLKLIDTAGIRDTNDQVEKIGVERSRKALGAADL
VLLLIDSSNELTDEDRQLLEATKDKQRIIILNKTDLPRKVDLEELKSLAGKSAVIETSIVNHEGMDQLGEQIGHMFFNKG
IESNQNNVMVTNARHIGLLHQANDALSDVLKGINDGMPVDLVQIDMTRCWELLGEITGDSYQDELLDQLFSQFCLGK
>SEQF1778_EEI66354.1 R3H domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVFTGTTIEEAKEKARTQLKPTVNQTIEFAVLQQPQHGFLGIGRRQAQVDAVIKDKEIAMLSLEEKDEQPAKEPEQKPA
SLNSAEDELDPAEIKRRQQANLKKVQVTSKELVEYLRTVFKELGIAVEPRIINLEAHDLKVNLQTEENGRVIGKHGCRIN
AMEQLSNIFMDYHGAAKVNVELDTSNYRERRQEAVHNLAQKAAMEVVASGKAVFMDPMPARERKQIHHELENNHHVKTYS
HGREPYRSIVIAPKD
>SEQF1778_EEI66355.1 membrane protein insertase, YidC/Oxa1 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKKTKKFLSLGAIMSLALFLAACSNKPITSHSTGIWDHYIIYNCSQFIIWLSKHFGGYGMGIIIFTIIIRIILLPLMFY
QTKTMMKTQELAPQLKAIQKKYSSRDRESMQKMQMETQKLYKEAGVNPWASMLPLLVQLPVMWALYQAIWRTSALRNGTF
LWLQLGHPDPYYIMPILAALFTFISSWLSMASMPEKNSMTTTMTWFMPIMVFFMALGFSSAITLYWVVTNAFQVVQTLII
QNPFKIRREREEKQRAEKAKRRKIEKAKRRAYQSRRK
>SEQF1778_EEI66356.1 ribonuclease P protein component [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKSYRVKKESEFQRVFETHNSVANHKFVVYQMEKPGQKHFRVGISVGKKIGNAVHRNWVKRRIRQTLLEVKPQLRSDVD
FLVIARPAADGLSMAETKKNLVHVLKRAHLLDEKSED
>SEQF1778_EEI66357.1 ribosomal protein L34 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRTFQPKKRHRARVHGFRKRMSTSNGRKVLARRRQKGRKVLSA
>SEQF1778_EEI66358.1 chromosomal replication initiator protein DnaA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTELDSLWEAIQNSFRQDTTPVTFDTLIAPAKAISLSQNQLEIEVPTPVHRDFWRKNLNTQLKEFAQHELGRNIEPHYIL
EGEFTYTNKKTEDDPTPSFEMDTPLNPHYNFGTFVVGEGNKMAHAAAFAVAESPGSLYNPLFIYGGVGLGKTHLMEAIGN
HMLQVNPNSRVKYVTSEDFTNDYINAIRNNTTEQLREEYRNLDLLLIDDIQFLANKEGTQLEFFNTFNALHDRKKQIVMT
SDRIPNEIPELQDRLVSRFRWGLTVEITPPDLETRIAILRSKVEEDHIDIGNDTLNYIAGQIDTNIRELEGALTKVQAFA
NLSGERITPSLASQALKGLHRVAKNEISIAKIQKQVADFYNITQGDILGKKRVKQIVMPRQIAMYLSRELTDSSLPKIGN
EFGGKDHTTVLHAIDKIEAELKKDTDLQNDITKLKAKLRS
>SEQF1778_EEI66359.1 DNA polymerase III, beta subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFTINRSAFISQLNNILRAISSKTTIPILTGLKMVVNKDNIVLTGSNSDITIESVINANDAENDLTIEATGAIVLPARF
FSDIVKKLPDKKVTIEVTSGFQADITSGSAKFQINGQDAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPI
LAGVHMTLKDGVLTAVATDSHRLAQRKVVLENIDNSIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFIFGNTHF
YSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSLKPSESLVRISGDSPDIGTVEEKVVTS
ALDGNDLEISFNPNYMKDALRSFGQATIKISFTSPLRPFTLVPTEDQENFVHLITPVRTF
>SEQF1778_EEI66360.1 S4 domain protein YaaA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEEKSVLIDSPFITLGQLLKEEGIIPTGGAAKWFLKENTVLVNDEPDDRRGRKLYPEDKIQIPDHQLLVIKGK
>SEQF1778_EEI66361.1 DNA replication and repair protein RecF [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILTELHLHHFRNYQDLTVHFNPGVNVLIGHNAQGKTNMLEAIYVLSLTKSHRTSNDHELINWQEKSALISGTVEKSIGK
IPLELQFSSKGKKAKVNHLEQARLSQYVGQLNAILFAPEDLSLVKGSPALRRHFMDREFSQMSSKYLYNAGQYRTLLRQK
NKYLKQLKYKQQTDRVLLGVLSDQLAAFGAEVIIARQYFLKHLEGWAADLHQEISLNKESLQLEYVNQLKVNDETTAEEA
YQALFKLYQDNEQREIEQGTTIYGPHRDDIRFLVNDKNVQAFGSQGQQRTTALSVKLAEIDLMKEQTGEYPLLLLDDVLS
ELDTIRQTHLLTAIQNKVQTFLTTTSLSDVARQLINEPTIFEIEHGTLNKEEVK
>SEQF1778_EEI66362.1 DNA gyrase, B subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSNEQQKETKMELASEYDASQIQVLKGLDAVRKRPGMYIGSTSAQGLHHLVWEIVDNGIDEALAGFCDEINVVVNPDNSI
TVKDNGRGIPVDTQKETGKSALETVFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTELDVKVARQGKRYYMDFDHGH
VKSAMKVIEEGLPETEHGTTVHFKPDPEIFRETTTYNIKTLTDRLRELAFLNKGLKITIEDLREIDHERKEFHYEGGIRH
YVEYLNEDQNVLFDPPIYVEGKENDITVEVSLQYTDSYRSNLLTFTNNIHTYEGGTHETGFKMALTRVINDYGHKAGILK
SNETLSGDDVREGLTAVVSIKHPDPQFEGQTKTKLGNSDARTATDHVFAATFNRFLLEHPDEARQIIEKGQLASKARVAA
KRAREVTRKKSGLEISNLPGKLADNTSKDPEISELFIVEGDSAGGSAKQGRSRLTQAILPIRGKILNVEKATLDRVLAND
EIRSLFTALGTGFGDDFDITKANYHKLIIMTDADVDGAHIRTLLLTLFYRFMKPMITHGYVYIAQPPLYQVRQGKFVKYI
DSDEELEQVVSSLQPSPKPVIQRYKGLGEMDAEQLWETTMDPENRHLLRVKLDDAEQADKIFPMLMGTKVGPRRDFIEQN
AKFVENLDL
>SEQF1778_EEI66363.1 DNA gyrase, A subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEQDMPNRITDVNLTSQMKNSFLDYAMSVIVSRALPDVRDGLKPVQRRILYGMNELGVTPDKPYKKSARIVGDVMGKFH
PHGDSSIYEGLVRMAQDFSYRYMLVDGHGNFGSVDGDGAAAMRYTEAKMSKIAVEMLRDINKNTVDFHDNYDGTEKEPDV
LPARFPNLLVNGASGIAVGMATNIPTHNLGEVINGLHMLMNNPDITTEGLMKAIPGPDFPTGGVVMGKSGIRKAYETGRG
TIIVRAKVDIEEQKNGKQRIIVHEIPYMVNKAKLIERIAELARNKDIDGITDVNDETDRDGMRIVIDVRRDASAEVILNN
LYKMTLMQTTFNFNMLAIVNGAPKILSLKQILQYYLEHQESVVRRRTEFELKKAQNRAHIVAGLRIALDHIDEIINIIRN
SQTSEVAKNELMNNYGLSDRQAQAILDMRLVRLTGLEREKIEDEYQKLMAAIADYKDILAHRERINQIIYDELMEIQKRF
GDERRTELQVGDITNIEDEDLIEEEDIIVALTHNGYIKRLPVDEFKSQHRGGRGVKGMGVHKDDFIEQLISSSTHDMLLF
FTNSGKVYSMKGYEVPEYGRAAQGIPIINLLGINNKEKISAVINVSHETNDDDKYLFFTTKLGTVKRTAVTEFKNIRSNG
LKALNLHENDELIDVEVISEDQPMIIGTHNGYALSFKSSVVRSMGRSAAGVRGIRLRDEDYVIGAAPLNSDSKVLVISEN
GFGKQTPASEYPIKGRGGLGVKTVNVTVKNGPLVGLTTVNGDEDIMLVTDQGVIIRFGIESVSQTGRSAVGVHLIKMDNG
ARVATIAKVDKEVDEETEEVTNNSSQEEN
>SEQF1778_EEI66364.1 ribosomal protein S6 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METRKYEITYIIRPDIEESAKSELVDRFDKILADNGATIADSKDWSTRRFAYPIAKYTEGTYHVVNLTTDSDQALNEFDR
LAKFSDDILRHMIVKLDA
>SEQF1778_EEI66365.1 single-strand binding family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNRAVLTGRLTRDPELRYTTSGTAVVSFTLAVDRQFRNQNGDRDADFINCVIWRKSAENFSNFTHKGSLVGIEGRIQTR
NYENQQGNRVYVTEVVVDNFALLEPRQNGGMNQSGVQQPFNNNQQSFGTQAPQYGSQPQPGNNAPQSNPSPSMDNGFDPN
QNAGNQFPGSSDDGGQSIDLADDELPF
>SEQF1778_EEI66366.1 ribosomal protein S18 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAQQRRGGRRRRKVDFIAANHIEYIDYKDTDLLRRFISERGKILPRRVTGTSAKNQRKLTIAIKRARIMGLLPFVAED
>SEQF1778_EEI66367.1 deoxyribose-phosphate aldolase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLNKYIDHTLLSPEATEAQVEKVIKQAIDNHFHTVMINPYWVAKTHKALEETDVVTATVIGFPLGATTTATKVFETEQA
IKDGVDEVDMVMNIGEMKGKNYAKVADDIKTVVKVAHNANKVAKVIIETALLTDDEITKVSKIVADAGADFVKTSTGFST
RGAAVHDAELMSAATKLPLK
>SEQF1778_EEI66368.1 putative sugar-binding domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDSKQQIKQAVQVSKLYYLDGVTQAEIGKKLNLSRPTISRLLQFAREKNIVKISINDPLSNIEDLQHQLKEKYQLKDVII
STPESNETAEILSSLGKATARYLDKKVKDNDVIGVSWGRTLVSVARQLIPNDRKNVQVIYLKGTVANSTHNNYVVEVTKC
FNKCYHTQAQILPLPLIFENKQIKEMVIKDKFINEILDTGKRTSVALFTVETTEQDATLFELGYFNDQQIKTLQEKAAGD
LVSRFIDERGKIVDDQLNDRTVAIALDDLKQARESVLIAGGMNKLKAIKAALAGKYANVLVTDSLVAQHLL
>SEQF1778_EEI66369.1 DHHA1 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKIFSRENWEFYFEHPAVRWNVCYIVLLTIIGLILGFMDNWIVGLIVLVIAVIGGAISIRRLRKLLVDAHEYLNELTYK
VQRGQQEALLEMPMGMIMLNKRHEVEWINPYMARYFNLEIVVGKPIADVDVKLAELIKDHADDKQTQVVTWRDHQFEFLV
QHHGQVVYLLDITKYEQISAQYKDEQIFIGNIYLDNYDELIQGMSDSDVSNLHNYVTSQISDWAVANHLLMKIIDDDNYL
IIGHQASLKELEKQKFKILDVIRENTSKQNSPVTLSVGIAYGENDLIKLADTAQNNLDLALGRGGDQVVVRAQDQEARFY
GGKTNPMEKRTRVRARMISQALQELMAQSDQLFVMGHTNPDMDSIGACLGIRRIAEMNGKECWIVIDDEHPHSDIQRLMH
EIDNYQTIKDHIISPVEALEKATNNSLLVMVDHAKRGITIAPELYDKMQNRLVIIDHHRRGEDFPENPLLVYIEPYASST
CELITEMFEYQPREGKGLNKLEATAMLTGIQVDTKSFTKSAGTRTFDAASYLRSAGADGLMIQSFMKENPETFMMRNHLI
SRAEINDKIALCTGEEGQVYDPVTAAQAADMLLQMSGIEASFVIFERADNKIGISARSMGNVNVQVIMEKMGGGGHLANA
ATQISDKDITHVKQELVDILTKPDKEQDDTEE
>SEQF1778_EEI66370.1 ribosomal protein L9 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVIFTQDVRGRGQRGQIKEVPDGYAQNYLIKRGLAKQATKAAMSQLKGQQRAEEKHAAEELADAKRMKKILEDDNTVVE
LSGKAGTDGRMFGSISTKQIATALQKQFDLKIDKRKIELAAPIKALGYVNVPIKLHPEVEAQIRVHIAEK
>SEQF1778_EEI66371.1 replicative DNA helicase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNAPVQEEPRDIEAEKAVLGAAFLSKNALADAMEYLEPQDFYRKAHQIIFEKMVQLNDADQPIDPLTMKNVLDQDNQTE
NIGGVAYIAELATAVPTAANVVYYSKIVHDKAISRRLINTATKIINDSYAGNDKIEDQLDRAEQEIMSVSENSRQTGFKS
ISDVLQESINHVSELSSQDSEITGLSTGYAQLDEMTTGLHKDELVIIAARPAVGKTAFVLNIAQNVATRTDNTVAIFSLE
MGAESLANRMLCAEGNINANHLRTGQLTQDEWQSLFIATGALSNASIYIDDTPGIKVAEIRARCRRLAKEKGNLGLIVID
YLQLIEGSNPDNRQQEVSEISRQLKKLAKELEVPVIALSQLSRGVEQRQDKRPVLSDIRESGSIEQDADIVSFLYRDDYY
EHDEDSEDNNNPGNNQDDDGSNASEVEVIIEKNRSGPRGTVKLLFAKSYNKFTSISYIPEDNN
>SEQF1778_EEI66372.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNRQGVELKWLLFGMFLGSIGNSFVWPLTTIYIHDQLHESLTVSGIVLLFYSGANVVGSYISGMLFDRANPRKLMIGGTL
LATIVMAIMIFFNGWPIYGILLTVIGFFNGWIITMVNSFATRSGRDGRYVFNMLYFANNLGMVIGTTIVGPLYQYADGNV
SPMFLITTILYTMFSLVVIFFFKDSQQTVVKTEDMEAEEENKTVNIKMPQANLWINWIFFIALVVIWTMYEQWASNLSVF
MTDQGISMTKYSLLWTLNGILIVVFQLGITWLNRWVNRPYAQVFIGMFTIGFSFVLLLYAHSYSWFVAAMVVLTIGEATA
LPTMPAIVNSLSPVAVKGKYQGILNAFSSLGKAIGPLFGGLMIEATSYHILFIICAISIFVMEIIVVFVIKIKRAKAVEY
>SEQF1778_EEI66373.1 hypothetical protein HMPREF0534_0320 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFYNNFDNVHGEDRYGMVGKTGDPFREECKLGISCYQCHEQPLVIAERNWMDTNNDDSQRYQIVVVCEHCGAVDEFIVND
GREHQIGKLKHSKYQPTEKNIINNGAVN
>SEQF1778_EEI66374.1 polyphosphate:nucleotide phosphotransferase, PPK2 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLMKTKKYCYTGKDFDIKTAPTKVKDSADDLKKIKKKIKKNVKSIKNAQKMMYARRHYGVLVVFQAMDAAGKDSMISHIF
AGVNPVGFKVANFKQPTGRELRHDYLWRINRELPMRGDIGVFNRSYYEDVLVSRVHPALILQSNIPGIESVHDVNNKFFD
SRYEDIRQYESYLTRNGYLIVKFFLHVSKEEQKKRFLARIDTPEKNWKFSAADIRERQYWDDYQKVYEKVINATATKENP
WYVIPADDKWYSRLIVSNILTKKINSLPLAYPEVSPEQEMSLRQARKELIAEDK
>SEQF1778_EEI66375.1 Fic family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKDISVTLPQVAINQFLNSLLLSEIFYTNDIEGVKTSRVEISTVIQENNHPINGDDHISKKRLGSTIKMYQRTQLGKKV
EINVLQDYRKIYDSLLKGELNEDRLPNGKIFRDKLPNSEVLSIGDGIKTVHRPPTTETAIKVALTALIEYMNNDDTPSIY
KALVTHFFFENTHPFLDGNGRMGRYLLSSYIANKFDRFTGFSVATAIHNNVQQYYKVFKDADSAENRADLTFFIQKLLMI
LVSQQEKVIKILSQSREKLDKANEIISQWVNEHHHQLAATSDSLYCNVLYLLAQSKLFTNQLDLGIKDNDIIETLKKSNR
HYPMTKTKAAIEELEALGAIEIVSKRPKQHVITIL
>SEQF1778_EEI66376.1 transcriptional regulator, MarR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLKKDKFEQMNCLLRNYMINMKHFYTELAPELDITPQQAHTLFYIEKHAGLIQRELGDHFHLRNASVTSMVKNLERDGY
IIRKADQESARIKRIFLTKKGEEKTNEVKEIFDKAYLQIISRLDERDIDAIVKGMTNINSNLKK
>SEQF1778_EEI66377.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGANLFVPQLAQKLINNFKSISLTLAILTVVIFIAGLITSALSGLLLGIFGENVVSKLRKQLWQKLLKMPVKYFDDVKTG
EISSRLVNDTSQVKDLLASTLPNAMTSLLQFVGALVIMLAMDWRMTLLMFVAVPLVILVMLPVMNQSRKIGRVRQDELAK
FASDSTDVLGEVRLVKSSNGEEHELAKGNRRIDNLYHVGRKEALINSVTQPITNMLMMIMFLGILGYGAIRVMNGAMTMG
ALVSFLMYLFQIISPIVVISQLFNNMAKTSGATERIQQILTEPEEFAADKAEKDIASAPLKFENVDFAYEEGKPVLRDVS
FETKPNAVVAFAGPSGGGKSTIFSLIERFYQPTGGEILIGEENIENVDLAKWREQIGLVSQDAAVMPGTIRDNLTYGLRR
EASDEELWDALRMAYADGFVSEMEDQLETEIGERGIKLSGGQRQRIAIARAFLRDPKILMLDEATASLDAESEAMVQKAL
GDLMQGRTTLVIAHRLSTIVDADKIYFIENGTVSGAGTHQELLKTTPLYAQYVKDQFK
>SEQF1778_EEI66378.1 response regulator receiver domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEGIIDMAKKILVVDDEKPISDIIKFNLEKEGYEVVVAYDGEAALEQVEAENPDLIILDLMLPKIDGLEVAKRVRAKHTM
PIIMVTAKDSELDKVLGLELGADDYVTKPFSNRELVARVKANLRRQATLKAPAEEENNTDIQIGDLTIHPEAYTVTKRGE
NINLTHREFELLHYLAQHIGQVINREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHPQWLITRRGVGYYLANPDQ
N
>SEQF1778_EEI66379.1 PAS domain S-box protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTLECVGAVFVRQLEHQNLNTFKQTIELPSYVDNSLAEQLSRSNTKKANKQINQILSEVNNNNISEIRVVDSKSIVRGT
SNADNRSAIGQKTTDQAIKATLLNNRSHTENLYDNSNHTRYYVNVIPLVDNSNNNVVGAVYLRASLESVYANINNITLVY
LSAAMITIVLSLILAIIISQEITRPIEEMRKQTLRIARGDYSGQVKVLGNDELGQLAGAVNNLSVRVEEAQESSDSERRR
LDSILSHMSDGVLATDRRGNVTIVNNMALQLLGVENEDDLIGKSIIDVLDIRHDYTVRQLVNGEQREMIIDMSNSGNNLI
LNAYFSPIQRESGFVSGLVCVLHDVTSQQKEERERKQFVSNVSHELRTPLTSVRSYVEALSDGAWQDKEIAPKFLKVVQD
ETDRMIRMINDLLSLSRMDAGTTKLNLEYVNINELFNYILDRFDMIIKKEEDPKKKKYTIERYFTKKDLWVEIDTDKFTQ
VIDNIMNNAIKYSPDGGVITTRLLETHNHVILSISDQGLGIPRKDLGRIFDRFFRVDKARSRKQGGTGLGLAISKEVINM
LGGQIWVDSVEGKGSTFYISLPYVPYEEEDWDDEEAEK
>SEQF1778_EEI66380.1 YycH protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMKKLKSNWQAIALTVVVLLSLFISWIVWTNPFPFEGARHENFNNNQSQQYTPQSRGDVYLPTKAVETNEKGTQNQLYSP
KANLILSVKKELEDWKLGRTNVVKQNNSDVYLSYLRRRNSLMLTYPDEVPSSVFNETFSQSIDTDRVNQINHIVIPLNGQ
HEIYLLGDHHYSVYRVRVEQGKFNHIRQLLKSMDRIPVDHKTINGVAVMMYPRSFELPALGYQITAQNIDTLSASLMSTN
QHTTITANRNGNETTYTDGTNRRLIFNHQDGTLKYENYLSKDDRESTSQIFPHFYNKLTTIGIPLDNLRYDEVSEHGRRL
NYRAYVNSFPIFNSDGYGEVTLESTSSGNERFWLSLYSLRVPLPIDHQMVKLPSSADVINQLHATNRMRDIKDLRVGYIW
KTDKDSHVVKLVPTYFIKYRGHWVEYTELEK
>SEQF1778_EEI66381.1 YycH protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFKRIQWIFILAFLLFDIFVGSSLILETRFTVSNGQQNRQSTVLKEMRNDSISYGELSNKQQTGYYIAGKKSSDSGVLE
QEAGKLRNQNFRLSSGTLTSEFDKPIKTTKNNEIRRVDRLLKNKKMVSLGNHYRYNKELSDKNTLVYTQMLEGKPLFSND
GQIRFRINSDYEITGYTQTYLQDVEILRQRSNTISQRRAITWLYKHNQIPNNSRIRWSVLSYSKLLNTTTDDKAVYVPTW
TVEIKTKNSGAIQQLQVNAFNSTVMKETPDSVNTNSLNDK
>SEQF1778_EEI66382.1 metallo-beta-lactamase domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTETDPLRYSILASGSTGNVTYLETRNHRILIDAGLSGKRIENLMKKIDRSLKDVDAIFVTHEHSDHTHGVGVLARRYGM
DVYANEGTWQAMANKVGKIPLAQKHIIAPNTVKDLGDMDIESFAVSHDAAQPQFYQVHHNNKTFCIITDTGYVSDRVEGT
IRNADAYVMECNHDTEMLRMGPYSWPLKQRILGDEGHLSNEEGADALMSVVGRRTKEIFLGHRSQHNNMRSLAHLTVASL
MEQHDFGVDHDFKLQDAEPEEPSKLMTL
>SEQF1778_EEI66383.1 trypsin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNRIKQAFKDRLWLGVIIVGLFAGLIGGGIALGINNLVQHHEEVTSTRVPAGSNRSGGTKVNKNKADLSGEASQAYKSVQ
GAVVSVINKQKVQQSSGTLGIFGYGSSNRSNSDYSSDNKLETASEGSGVIYKKSGNSAYVVTNNHVVKGSNALQVILSNG
KKVNADLVGTDSATDLAVLKINATNVKTVASFGNSNSIVPGQDVLAIGSPMGSEYANTVTKGIISAKDRTLKAGTDGTLT
SVIQTDAAINSGNSGGPLINMAGQVIGINSMKLASDTQGSSVEGIGFAIPSNEVVTIINQLIKNGKITRPSLGISMVDLS
NVTSDQQQSVLKLPTSVSKGVVIMDVNSGSVADTAGLKKYDVITKLGDTQVTDAGSLKAALYKYKVGQNAKVTYYRDGQQ
HTATLHLTKSADTTSTDDSQQDNN
>SEQF1778_EEI66384.1 hypothetical protein HMPREF0534_0285 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKENSQQLQQDIKHDRQMIEASFDSNKLFTSKEMKEQFGKFGWGKHED
>SEQF1778_EEI66385.1 hypothetical protein HMPREF0534_0286 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFLDKKGRAKMTALTESMFVIFDQPEFSFKKIKENHSPEEVADLKEKFKAVWQVWKKVNQTVASQLPTGEFAKVHVESW
TNGWNLRDHYWASYRLASLADYNSCIGVMLDKKQLQVYLMFQHYKSEQRQGTPDEYNQLLDKIPEWANDIDATRWYLWDK
DEMEFSDHMSLTKYVNSRDAQQQFNSDARKTSFLLGKFAFRGKDQVNNMEEYISSVIRQLTPLYEELKWKYNRDVK
>SEQF1778_EEI66386.1 branched-chain amino acid transport protein AzlD [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTLTEQIISILIAAVVTMATRFIPFLIFDQSKELSPYLEELGKFLPAAIMGVLVIYCYRNISFAEPSKALLEIVAGLVTL
FIHLWKRNMPLSILVGTGFYMVMLNLF
>SEQF1778_EEI66387.1 branched-chain amino acid transport protein AzlC domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFGMCDESFSLNATLKVPDSLDRSYVYFYITAFNYFSWVAGAGLGGLLGRVINLNLAGLDFVMTALFIVLFTEQLKNAR
TQRDALIGLAFAIICLLFCNKNVFLLVTLVTLVALFSLNYLITRRKNDIN
>SEQF1778_EEI66388.1 transposase-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANKLNSLAHTKWLCKYHIVFIPKYRRKVIFNQYRRDLRDYIRLLCKYKGVEIIEGHMMPDHVHLLVSIPPKLSVSQFMG
YLKGKSALMMFDRHANLKYKYGNRHFWAEGYYVSTVGLNESTIKKYIRDQEKHDIAMDKLTSVEYSDPFKGK
>SEQF1778_EEI66389.1 branched-chain amino acid transport protein AzlC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRKEVRYAFQKTSPVMLGFLFLGAGYGIYMHKLGFNFLYPLLMAATIFAGSVEFVIGNLLVQSFQPLTVLVLTALVNSRH
IFYGITMLKKYSNTGKLKPILI
>SEQF1778_EEI66390.1 transcriptional regulator, GntR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPINDFSHYQLTWYPDKNKLTRPIYKSLLDQLKSAIERGILTPGTKLPPQRELADYLDINFTTVTRTYKLSAQLGLTYGI
HGKGTFVNSNGIDPLTANSPLTRTIDLGFVASFEQTNHLLDNILSNTVKQGASQLLTYDSPTGRPIDKEAFQHYLDWLGV
RLTPTQHILITAGGENSLTLLLMTLFSSGDKIAVDEFTYANLIATAQLNNLHLVAIKNDQGGMNIEALKHACQNNNLAGL
YLMPEYSNPTGTVLSMARRKEIATIAQEYGLKIIEDDYLSFLSKLNPEQPPKIMELLPDQTCYVCSMSKVLASGLRVGYL
VFPAQLAQQIKNGFFNTTVKTSTLNTAIASTAIKEHVVQQIIQNKVNLAKQANILFEQYFPTAPTNQLTDYAFFRRLPLK
SIQNTAKIEQALANINIRCFGSDRFQINASSNDHFLRVSLSANKSLDELETGLKRLREFLQKANLKSDVKNFS
>SEQF1778_EEI66391.1 hypothetical protein HMPREF0534_0292 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNSQAMLGLSSDAPCTPWAEPDSPFYSIYAAVTRKAADFVILNDDIFTVAHSKLKNIHVNETWMAGKRVM
>SEQF1778_EEI66392.1 hypothetical protein HMPREF0534_0293, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
VFNEIDPQVGLQPSGDEKLRVAGIKVFMDGSISGETAYNTDPYPSGKMGVSLTSVEKLKRAVKMARDNKLQLAVHAMGDK
AIQTVIDVTKEMAPWLTTMPSVRIKHASLMTDQMFAEIANSKMNYALVTQPIFFLRKMNPIVIIFHQPSLN
>SEQF1778_EEI66393.1 beta-lactamase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKVNLYIFLTLCSFAIFLLTTPSKVKAEVVDKQTQHQLQDYMKDHHINGVMLVNGKDGKTIAIENNETTNKDQIVKADR
LFPTASLQKIVTGTAVYQLKQKKQLDWDTSLSKYYPQIDGSKDITIRELMNHTSGLINNDHPFEPLKGQKAQIAYMLKHL
KYDHTHTWDYQDVDYEILAAIISKQTHQSYNTYIRKNFAKPLHLHQIKDFSEVSKKEIPQPMDPTVDWHRVTVTTSSDFG
AGNLFISPNDYWKFVYNEVLKDPKIINEYYQQAQHQEVAYFGGVYFDGDVIRANGSIPGYNSCFVADYKTKRMIMLFSNN
IDYLKLKAASDDILHNYME
>SEQF1778_EEI66394.1 hypothetical protein HMPREF0534_0280 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLKCFSNKNQIFILLCKMGDKICIIQIDIFSKKDAWKEYL
>SEQF1778_EEI66395.1 hypoxanthine phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNDVEKVLYTQNQVNQRLDELANTLTEKYQDEFPVLVSVMTGAMIFTSEMMKRLNFKLNVDYVDVSSYEESSESTGKVK
LIQDLSHDIKGRPVIIMEDIIDTGHTLKYLAGLFADRGAKSIEICSLLDKPDRREVNVEADYVGFKVPNEFIVGYGLDFN
GLYRNLPFVGVLKRSVYE
>SEQF1778_EEI66396.1 Mg2+ transporter-C family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAGIRTHALIAVGAAMVMIISKYGFFDLMKITHSNWNVDPSRIAAQVVSGISFLGAGTIINRHDEIIDGLTMAARIWVIG
AIGLAYGSGLYSIGIIGTCCVLLAEVIGKYLDQFALRQGKGFSCFIQLEGNTDDLHALINQLNKKYFEVPLKYSIYDYGD
GKISCQLYGELRSGFKSENVFTDLTELGNIKKVELE
>SEQF1778_EEI66397.1 hypothetical protein HMPREF0534_0283 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSPGKNPSLINVPMMKYLAVRGHGDPNQENSEYKKAIE
>SEQF1778_EEI66398.1 hypothetical protein HMPREF0534_0284, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKKGTYQIPDYFDFVVPPLEGLWWQDGITGIDYAHKEKFNFIAMIRLPDFVTQDVFDWAIQKASERKQLDLHNVEFLSM
QEGLYVQALHIGSYDDEPATIEKIHKFIEEQGLQVDINDDRYHHEIYLSDPRRTKVENLKTVLRIPVKNN
>SEQF1778_EEI66399.1 transcriptional regulator, LysR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDNYLLEELVTFASEKTLAKTAEKLSVTQPTVTRGMQKLEDELGIQLFDRQPNRIVLTDTGKLAAEKATEVLAVNRNFV
QQLQNYAARQSVIKIASIAPGPLILLRVKSASFSTQISIDKKFITHDQITTSLLNNENSIIISDQEIQTDQIESRYLGTE
NLYVNLDKFMYLANSQQVSFKDLAGLSFVVLNDIGLWKEIIKKYIPNAKFLYQEEWAALTEITKYSSFPYFSTNITTVNP
QQRTSNDDRVRLPITDEVATMTFYANYLKKQRKSLMPLLNEISQNWPNLS
>SEQF1778_EEI66400.1 L-asparaginase, type I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVTKMTKKLLLLSTGGTIASVVSDEGLAPGESGEELIKMLGRLEYDITVRDILELDSSNIQPEEWKIIAETIYDHRNEYD
GIVVSHGTDTMAYTASMLTFMLQHINIPVVLTGSQVPMNVILSDAPDNLRLAFAAAANCEPGVYIAFNRKVMRGCRSVKV
RTTAFDAFESVNVPPVGEVTSDGFSIRDHQHPQPGKSQLNTKIDTHVSLVKLFPGFDPALLHAMAKNGCHGIVIEAYGLG
GMTSIRRNMVAAVGELIRNGIPIITSSQCLYERSDLTKYEVGRLALLEGAISARDMTSESAITKLMWGLGQGMDVKEIAD
FFNTDVAGEVTLD
>SEQF1778_EEI66401.1 hypothetical protein HMPREF0534_0269 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRSNKLTKIIITSTLALSLLAVPVSQATVLAAETTSESTSSSSTTQTHTLNKSYVVYGAGAAEKNELNNVLAVDDNFTTL
TATASDYQKYINPNGSTTNAAMVSSVAIVPTDPGSGIKVNVKKFNGEDNITKVTAQQYAMVAQMAGVTDVTITVSANRAV
SGESALTGVYKAIAADGVSLNEQNTQSANQMLTATNGAIEANKDDSKYPGKLMAAVGDTTKEINQQKKQGTTPTQNQIQV
IFNQKLEERNIYNETKNHEQPIINALVQFNNAPISSSKDYSSHVTDTINNVKNSSGDMMNKAKKFLNSQDGQAVKQQAQS
WWTRFVNWIRSWF
>SEQF1778_EEI66402.1 L-2-hydroxyisocaproate dehydrogenase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTRKVAVVGMGHVGATVAHYLVAGGFVDDLALFDTNEAKVQADALDLRDAMANLPYHTNLTVNDESQLRDCDVVVSALGK
SKLVDTPDHDRFAEFKFTRTQVPLVAKMLVDNGFHGKLVDVTNPCDVITSMYQKLTGLPKEHVMGTGTLLDSARMRARVG
EALKVDSRSVVGFNLGEHGNSQFTAWSTVRVLGKPVTELAKERGLKLSELEERARQGGYLVYQGKKYTNYGVATAAVRLT
NALLNDARTEMPVSNYREEYGTYLSYPAVVGRDGVVEQLHLDLTPEEESKLATSATYIKERLKKEEERAN
>SEQF1778_EEI66403.1 Hydratase/decarboxylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTNKNVTLNEEQEAFAQKLFQAYQSKKPLVMDEWAEVVSDDNTAYALQDRFVELKGLPTGGYKVSLTSKKTQDMFDSDS
PLYGQQVDAHFLPSPAVLSLKEQTMAPLVEVELGFRAKTDLHASDSMEDLLHKTTVCGTLEVPDSRFADWFPDLNKFSVM
SDCAVGGYVVYGQERPTDEVFKTVDDAANVNVTLYHDGKEVDSGASSEVLGNPLKSLQWLVRKLEEQGKTFRAGQLVSSG
TFLLPPHLTAGKWEAKFDNGFGTVSVDVTD
>SEQF1778_EEI66404.1 hypothetical protein HMPREF0534_0272 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKYYQLLLGLSAIFVGLLGISSRVRAVTHYVQSATPTIFVHGWGSSSHAEEKMANAARDAGITNTIVRANVDKKGKVTF
KRPIPANAVNPIVEVNLEDNKLSAYRDNYTQGYHRDGEYVKNVVLALEKQHHYKQINLVGHSMGNLEIINYINDNVNDKS
FPQVAHLVAIAGHYNGLVGQSETQNAKINPKTGELEKMDSAYRELLGLRQTFPKNTAVLNIYGDVGDGSHSDEDVPVNSA
KSLKYLVSDRANHIAKLKFMERMPSTVSFTITVK
>SEQF1778_EEI66405.1 bacterial transferase hexapeptide repeat protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNRLLKATSAFSSVAGHVINTRRTKMLKKHPLALYITWIVALAVIPLPLIILTNSQLTTDYEDLFAYDVGILAYVWWLVI
IFLSTRPRWLEKYIGIPSMYFLHASLGVAALIAANAHKFLSPGADHLVETTGDIAWYLAIVGIIYAIVFMSGWLVDRFKL
LLHVLNDVTGQKIDDSVEIRLPIRSDYGANLKIGKQVFINSGAMFTDLGRIELEDKVLVGPNVTIISVNHPLDPEKRHGI
ELKAVLIKENAWLGANATILPGVTVGENAVVAAGAVVSKDVPANTVIAGVPAKVIKKSEENNMSFGYITPLSANVER
>SEQF1778_EEI66406.1 peptidase propeptide and YPEB domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEKIEKRQDQQPKPDKKKARKFPKMTKKVLITACVCGGLALGAGGIAGVAAMDGYHAQIEVAVKHEKLANKSDIKIDQQ
AAIDQFNKKYPDKHLNEVELESDKGKYVYKVKGFDNTNEYKVKVNAKDGKLISNKSEKLDQNEKEYALDPGKAISRDEAI
AEKAAKKGNSIE
>SEQF1778_EEI66407.1 ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTTRAVTASRQLTRLFLMLFAIILVVINLLFVVTATNLIYRYADDQAEEVIETIEKDWPENQNRETFLNAYVARQDDDA
IEITDGERRYTSPKARKIFKRIDHRKLALKNLQLTRHGVYYLRQEKVHHHRTVKVAINVDDLIKLTGWLLIVTLLINLVI
SIVALPIIRRLAHRWTQPLTNLSAEIDAITPQSDRLQTLTVPKQPLEVHKVAQSFNQLLGRQYQVMQREKEFIANASHEL
KTPLAGILGHVNLIRRHGDKHPELIAKSLRYIDQEAQRMSQLINELLILEGHQTKKLTEINLSQVVLAEVKSLQGAYHQK
IITDLDPELSYRITTGDFQSLVHNLLENAAKYSPPDSTINVQLTADDHQIILSVADQGQGIARENREKVFERFYREDESH
SNKVAGSGIGLAIVKMIIEKYHGKITIRDNEPSGTIFTVYLPK
>SEQF1778_EEI66408.1 response regulator receiver domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLVEDEESLASFLITELELEGYEVIWAKDGREVLAIFKEKEITLILLDWMLPVYDGLTVLRRIHQSSNVSIIMITARSQT
SDISMALDQGLDDYITKPFEIEELLARIRVALRRLGQEKVDKLDYHFGPFEINLLKHQFMVDGKQVHLTPKEFPLMATLI
KEPGVVQTRDDLLNEIWGYDFDGQTNTVDVYIRALRNKLGKYRDSIRTVRGIGYVLGDEQ
>SEQF1778_EEI66409.1 hypothetical protein HMPREF0534_0277 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKPYIIVHMMTSVDEISILIGAGVYGRTGQPSFFDNRTESSRPIALQLKDVESYEDGAVWLRYLVK
>SEQF1778_EEI66410.1 hypothetical protein HMPREF0534_0278 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKINIAYKIIAIPSKKKHCFFKQLISHNIAQSKEDVEAIMFLLYAQYTQIMKNINTSIIFHLFFFKKLIKIIKTPHDSR
NNFSLRL
>SEQF1778_EEI66411.1 hypothetical protein HMPREF0534_0262 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQQYLPYIDYLKFNIHSFNKSANHWIDVTLAQWQRRSAIFNIEMIVGKIEDANHIALVNQLNIPFRQGYAYGHPENLKN
K
>SEQF1778_EEI66412.1 class I glutamine amidotransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRINVLQHTPNEGPGTIQEWSQDRGHEMYVYHPYQFGNLPTADETDMLIILGGPMSPNDDLTWIKQERVLIQRLLDAHKP
IFGACYGAQQIAKTLGYAVKKAPHKEVGWAPVYLKSDLISDIPQKLTALHWHEEMFEVPAQADLLFSSDLVKNQGFVMNG
NVIGLQFHFEPTADNVREITVNDDQYPLDHNDLHQNGKEIIQHGVPAENKRVMYRLLDFIANS
>SEQF1778_EEI66413.1 HesB-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEVQLIITDAASKWFQQKFNLASGNGVKFYGKTIQPHNVKHGPKQGYKPESTLDEATIVIKKDGINYHINFADAWFFSG
LVVTVDYQQEAEEPVFIFRREDNGGADVDAATGASRKYEEYWE
>SEQF1778_EEI66414.1 NmrA family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYAVTAATGNLGQAAVKELNKLAGAENVIVIARNTDKAAKLFPNNEVRQGDYEDKSSMINTFNGIDHVLFISSQPGGKV
DRATAHANVVDALKENNIKFVAYTSFPDAQNSTAALATDHRLTENAIKEAGIDHSFLRNNWYLENEIGFLQSGAASCDAL
YWANNKAGWALERDYAEGAAKVITSEDPREVYEFAGKTRTYDELGKALQEATGNDFTIKQISHDDYVKSLEKAGLDTPTA
ELFASFQDPINSGNLNKESNDLEKVLGHPVTPLVDAIKEVLAR
>SEQF1778_EEI66415.1 organophosphate reductase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
TNVPTVKLNNGVEMPTLGFGVFQVPDLSQAEQAVTDALEVGYRLIDTAAAYQNEEAVGKAIKNSSVNREDVFVTSKLWVS
DFNYKRAKAGIDASLQKLGLDYMDLYLLHQPYGDTMGAWRALQEAQKEGKIRAIGVSNFYADQLKDLELTMPVKPAVNQI
EVNPWYQQDQEVKFAQSEDIRVEAWAPFAEGRHDIFTNETIAETAAKYGKSNGQVILRWLLQRGITVIPKSVHKNRMEEN
IDVFDFELSDDDMKKMASLNKNESQFFDHRDPVTIEQIFGSSLKMVQDDEK
>SEQF1778_EEI66416.1 hypothetical protein HMPREF0534_0247 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAREVLILGATGKIAGHAIDALLANGNDELLLFTRHPQNMNVVDENRETVIKGDVLNIGDLEPAIERADVVYANLRNPEI
TQQAKNIVSLMEKYAVKPLVWISSIGIYDEVPGKFGEWNNEMLGGGQKDSYLGTYRSAADVIENSTLDYTIIRPAWLTDK
DEVDYETTAKGEPFKGTEVSRKSIGNFVAKIIDDPAPYARKNFGVNKPNTDGDKPAWY
>SEQF1778_EEI66417.1 transcriptional regulator, HxlR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFISLEKGEKMVEKDCPIENTLKLINGKWKSVIIYQISEYEPCRFSELQKLIPDCSKRMLALQLKDLEGANIIQKRVYS
TVPPKTEYSLTEVGKSLVPIIRSINQWGKKYTKK
>SEQF1778_EEI66418.1 hypothetical protein HMPREF0534_0249 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSQFNSLAANRRSIYALGDNLSQTPEEIFDLVKQTIKNSPTAFNSQTVRAVVLFGKSSDKVWEIVEDALRKIAKSPDAF
EQTKSKIDSFKAGYGTILYFTDTTIVHQLENDYPSYAANFANWAEQGLGGAQQAVWTALAEQGIGASLQHYNPLIDDAIH
QVFNLPADWQLRAEMPFGSIEAPAGEKAQLDDEEMFKLIK
>SEQF1778_EEI66419.1 transcriptional regulator, HxlR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MERQPKMYNTGADYALAIIGGKWKSVILYLLAGHPRRTSELVKQLGTSYKVLSDQLREMIDAGLVIRKSFNTIPPHVEYR
LTPEGENLYAALRYLNYWGENRAKQTGDIKIMCTDEMKQVGDDGLCVITKKHLNHWHQEIVKSKDKDISI
>SEQF1778_EEI66420.1 hypothetical protein HMPREF0534_0251 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKLEKLTGVCSLLLNLMPFLLYISLTKEQSDIFVGALPFAIFYAFRHTILLFCRDLEYDYQRLAWIGLYSGIIGYFLGM
FGGFQPIFWDLSGAGAGIASRLFPTAISQRRRLIKRGLLPQQDHLKPLFQVIIVLIVFGIIVWIKKPVISFALMLIITFG
AMGSIWKTPHAIRPLPVRLHWANYLLALVLLGAMLLLRLGRSLGFGKPLEWGTALLLIFLITMILTLLVNHRRLLHYPNH
LRQRIMLYGACGQYWTLYSTVFIGILYGTKMYSWTIVAYLFAFVFGGLLVKQTHHLFHFKDCQINLVMLTIGILLTFWLP
TYFIGVFIIRSFAGAERKTAIDDYEKATHNYSISSIVNYYYASIAGIISQLVMWGSLFIFAGTTGIDRIFGAFSVGKTSI
QSFPIIMNTHLILAGYMIIFIMALAFRLKNTKKQELR
>SEQF1778_EEI66421.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGNKTQSLYLFPGELMAKEKSIFTKDVVLVMAASFFFMFSNMYCNPLINGYAQDLGASSAFAGIIVGMMSIVSMFLRPIA
GNLTDRFSKYSLAFWGGILCFIGVAGYVLTPNSTFLLICRLVNGLGFVLCTVCMTTWLSYLVPFNHVGEAMSFYGLMNAL
AMACAPAVSINLYRIIGYRAAMVISALSALLVVVTIQFVSNRAQPAAHSVKQSGFHIKIIQRDAIPVALLTALFAIPYFA
TQADIVEYAEQRHLSIAVGAYFLIYAVVLLLSRLFLRTQFDTVRFEPWLILSTVATIFYLIMLSIMKSNIEMALAAAGMA
FGYGIIYSVCQSTAMMLAPDNERGLASSTFFLGLDIGMTLGPIIGGIIDSTLPVKYFYPVMLFIVPLVIIIFLVNRKKLN
SAIDQH
>SEQF1778_EEI66422.1 aminopeptidase E [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTEEHDLTSKMVEKLKKEFHSRKDAEIIARAIQKNGIKAASEDPTASERLHRAFSYEIKTGKPTNQRHSGRCWSFAALNT
LRHKFATKYKFKDFELSQNYLFFWDRIERANMFFQKIIATADKPLHDRTVDFYLSFALNDGGQWANAASIIEKYGVVPEY
VMPDTHNTKDTSDVAEVFDSLMRKDAIELRAMVQTNASATELQEAQERMMGDVYKIAAYSFGEPPAKFDLEYRDDDKKFH
QVLGLTPLKFYHEYFDTNLSDYVVVTNAPDHEMDRSYLMPAQDSVVDGLPIKFVNVPFAELQEGAIKQLQAGETVWVGND
VLQQMDRKRGLMDAKLYHREELLDVDFVMDKKHRLETKQAVVSHAMTLTGFDMVNDQPTRWKIENSWGKDNGDNGYFVMT
QDWFEEYTYEAVINKKYLSDRVKKVAASEPVTLPAWDSLQ
>SEQF1778_EEI66423.1 hypothetical protein HMPREF0534_0254 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKVFVVGGSGRVATDLIKDLVATGNEVTAGARHLEKVIKLNHVTAVELNLHDSVEKIAELMKGMDAIYFVAGSRGKDLL
QTDAMGAVKTMQAAEKDGIKRYIMLSSLYALQPEMWSKVSSLASIMDYNIAKFFADNYLISNTNLDYTILQPANLTEEPS
TGKIQIGEGSATSNPIPDVAQTLADILQHDNTIGHVIMMRSGDTPIEEALDQI
>SEQF1778_EEI66424.1 peptidase family M1 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKLERFYNTFQPDHYDVFIDINRAKKTINGKTTITGNATDPQIAINQKNLQVTGVQADGQELDFNIDNDAEAVRITLPQ
TGKVTFTVTYNTKLTDSMMGIYPSYYEVDGEKKQIIGTQFETTFARQAFPCVDEPEAKATFSLAIKFDEHSGETIIANMP
EDHVENGIHYFEPTVRMSTYLVAFAFGELQSKITETKGGVKVGVFATKAHQPKELDFALDIAKRAIEFYEDFYQTPYPLP
HSWQLALPDFSAGAMENWGLVTYREAYLLLDPDNTSLEMKQLVATVITHELAHQWFGDLVTMKWWDDLWLNESFANMMEY
VAVDVLQPDWHIWELFQTSEAPMALQRDATDGVQSVHVDVNNPAEIDALFDGAIVYAKGSRMLVMVRALLGDKALREGLK
NYFAAHKYSNATGADLWKALGDASGLNIGKIMNSWLEQPGYPVVTAKINDDGDLVLSQKQFFIGDGKDVDRQWQIPLNSN
YDEAPQIMAEQELNLGNYQALRDKNGQPFRLNLGNNSHFIVKYDDTLLNDILDHADELDPITQRQLLQDLRLLAQGQQIS
YASLIPLLKQFKDGPSAIVNAELYQIANGLKMFAKPDSPAEQELQQFFDLLSKDQVKRLGWLPKDDESNDDQLTRPYILS
TSLFARNNDSITQAHQIFTENQDKLESLSADIRGLVLKNEVQNFGSAELFDKLIKAYQQTADASFKQDLRMAIPNTTDPA
LIAKVVSYFEDADVIKPQDLRAWYRGLLANKAGQQAAWNWLRDEWQWLNDTVGGDMEFATFITVTAGVFHTPERLNEFKD
FFEPKLNTPGLTREIKMDISVIESKVNLINKEQTAVNDAIAQQ
>SEQF1778_EEI66425.1 transcriptional regulator, Rrf2 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYSYKLSDAVHLLSYLHVYQNGDLSSKAIADSIESNPSVVRQLMSDLRTAGLIVTRKGAAEPRLAKKPREINLFDIYQA
INMDHDLLHVDPKTNLKCIVGGNIQASLEKYYDQIQAAAFNEMKQISLADVIDDILQRQSTKLDLLKQQI
>SEQF1778_EEI66426.1 hypothetical protein HMPREF0534_0257 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNGNVNVFPNKIFKREWIDMSTLSFAGPRFTTKNLTLAAMLVALQVILNKLSIGDPAVLKFSFGFIATALIGYCLGSWIS
G
>SEQF1778_EEI66427.1 hypothetical protein HMPREF0534_0258 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MALLFIRLPKELIIWPIETLLVLVILRQLSRLNLIAKKSEK
>SEQF1778_EEI66428.1 aspartate--ammonia ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDLTIPKDYDPRLSIRETETAIRYIRETFQDEFGKELNLQRMSAPMFVEKSTGLNDNLNGVEQPVSFEMKDMPSETVEVV
HSLAKWKRLALKRYGFGMHEGLYTNMNAIRKEEDLDNFHSIYVDQWDWEKIISKDERTEETLKDTVRDIFKVIKHMEHEV
WYKFPQAVYHLPDEIHFVTTQELEDRWPDLTPLEREDKIAKELGAVFVMKIGDKLQRSGKPHDGRAPDYDDWSLNGDIIF
WYEPLQRRIEISSMGIRVSPESMKYQLEQADATDREKLPFHKMLLNGELPYTIGGGIGQSRLCMLLLGKAHIGEVQASIW
PEDMIKKCEENHIQIL
>SEQF1778_EEI66429.1 asparagine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRTTFKFYNLRESIKVETITISEAPKHVGETVKIGVWLTDKRSSGKIAFLQLRDGTGFFQGIIRKNDVSEEKFDSAKHD
LHQETSFWVTGEIAEDKRSKFGYEIHIKDFDIVGESEDYPIGNKEHGIDFLLDNRHLWLRSRKPWALMRIRSRVKLATME
FFEKHGFTQFDAPELTGSAPEGTTELFETDYFDRSAFLSQSGQLYAEAGAMALGRVYTMGPTFRAEKSKTRRHLMEFWMI
EPEMAWMHQDESLKIQEQYIAYLVQDLIDHCARELEMVGRSVESLKPFTELPYPRITYKKAIEMLQKSGFDVEYGADFGS
PEETYLADQFQKPVFILNYPKEIKAFYMPEDPEDSRQVICADLLAPEGYGEIIGGSERSYDYEYITNKLEENGLSKEDYG
WYDDLRKYGSIPHSGFGMGLERFLAWITLQDHIRENIPFPRMLNRLNP
>SEQF1778_EEI66430.1 hypothetical protein HMPREF0534_0261, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
NPHIKIAPLEKAVKCPHTTAEWPFSASHNCVWRPALSHFGFDIKWAIE
>SEQF1778_EEI66431.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNVEVKTLSEMTAQEWCRLAEERIKVFVVEQECPYQEIDEQDYQAHHLMLKDDQRDLVGYTRIMAKDSSHATFGRVLVLK
QFRGHEYGRQLVQATIDETKRLFPNKTIQIQAQAYLKEFYASFGFKPISDVYLEDNIPHLDMILD
>SEQF1778_EEI66432.1 hypothetical protein HMPREF0534_0236 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNKDNNQNNNKRRPTRVELYDTPKPGKEKKKRSFFNRQPKQTTPNHKHKTASPNKKKNPYGISRRMFKVILGCLLVILI
ATIVIFLVKQQDPVNVDSNDTTVSTSTSSRKKHKKSSSSSHKHRSSSNDSDDNDTQDTYSISTPSRSDNTPQSSHPTNQQ
PTTNSSSTPQQNQPSQEEHHDQGNSQQQSTSQPASSNSGSQPNQSSQSTSSQSNPQPVQPHSQNNQH
>SEQF1778_EEI66433.1 threonine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLIDVPDTFNIESIRDVFIYIKGEISMAQVAVMSPDGSVKKIDRDSQESLEALRKLSALMLKAALKQEFKGIRLGEAVAD
EDGFHVDSDKDNQQVSADELPALEDVIKGMAKNDVKVEFVEVPVEEALAEVKDDRFSTELINENAKDGKVAMYQLGDVKA
VADDDILLYGNVVKNLRLLSVAGAYWKGMSSNPMLQRIYGTVFYKKDALEEDLKKRQEAKERDHRVIGNQLDLFFVDPKV
GAGLPYWLPKGATIRRTIERYIIDREVADGYQHVYTPVLMNLDAYKTSGHWEHYRDDMFPPMDMGDGEMLELRPMNCPSH
IQVYKHHIRSYRDLPLRIAELGMMHRYEKSGALSGLQRVREMTLNDGHTFVTLDQIRSEFAKILKLIMSVYEDFDITDYS
FRLSLRDPKNVKKYYANDEMWEKSQSMLKSAMDDLNLDYYEAEGEAAFYGPKLDIQTKTALGNDETMSTIQLDFMLPERF
GLSYVGQDGKEHQPVMIHRGVVGTMERFMAYLTEIYKGAFPTWLAPEQVHIIPVNEEAHGEYADNLAKKMKAANIRVNVD
HRNEKMGYKIREAQTQKVPYTLVVGDDEKNNNGVSVRKYGEKEQNEMSQEAFMNEILEDIASYSREK
>SEQF1778_EEI66434.1 hypothetical protein HMPREF0534_0238 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNDLFKAMGKATEEHHASGLSFEAKTDAPAGIGQGILNVRK
>SEQF1778_EEI66435.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFTRQQWQRIFYDWANSGYGILVVTAVLPVYFKAVTDHASVSAANSTALWGYANSFGTLVISLLAPLLGALADYPYAKK
RWLNLFTWLGIILTIGLALVPTKYWQLLLIVYIGSIIGYSGGNLFYDSFLTDVADNRQMDRVSSTGYGMGYLGGVVVFII
FLVAELSKGFSGLLSSYGVARFSFILATVWWIIFAWPLLKNGHQRYSVSSVANPFVDSLRRLRRTMHHINQYKQLTWFLV
AYFFYIDGVDTIFTMATVIGKDLGIQTTMLMVVLLVVQLIAVPFSILYGWLANRFSTRRIIMLGIIVYFFICLYTLWLET
LTDFWILAILVGTSQGGLQALSRSYFGRLVPKNASSEFFGFYNILGKLGPFIVGVVTQWTGKSTVGAASLSVLFALGLVM
FIFALAIKDK
>SEQF1778_EEI66436.1 hypothetical protein HMPREF0534_0240 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITQRRSNGGADPKCTFLVEAKPGYYFTDEVNRPAIVEKVDPESIGTHDRYHGVHGYGPTQANYFTTAIFAGLQIKSGAT
VEHARLVDEGPTFAKLLGLHYPTSTAGQAIDAIFKD
>SEQF1778_EEI66437.1 type I phosphodiesterase / nucleotide pyrophosphatase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQPRRQSPDWFWYRKDIQLMPLYDVAKEKGLTTAAFLWPVTAGSKIDYNLAEIFPNRIWTNQVLVSLKASSPLFLYEMNK
KYGKLRHGIKQPWLDDFVTACAVDTIKNKKPDLTLIHLVDMDSMRHRYGVRSPQAKEALHRLDKRVAKIIQATKDTGTYA
QTDFVILGDHYQINVDKMIHLNMLFAQQGLLHPLGKKSTYRNNWQVTAKTCDGETYIYTRGAVDRGKIKQMIAGVEGIER
IYDNAAAIKRGGRS
>SEQF1778_EEI66438.1 hypothetical protein HMPREF0534_0242 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIVISLDSLGFRDLNELRQLTPTLADLIEKGTWVKKVEGIFPTLTYPSHPIPYFDYYWSVSGRTWNY
>SEQF1778_EEI66439.1 amino acid permease [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGIIIMQNQLPKGKEHEKTLGLFDLSILGIGAIIGTGILVLTGIVAAEDSGPAIVFSFLIAALASGLIGLCYSELTTSL
PNSGSAFYYAWVSIGKFMAFLAGWTLIGVYVTTTATVANGWTGYVQSFLEVLGVNLPHKLLVTPAAGGYVNLPAVLMILF
MTIILTRGTSESKLVNNFLVGVKIFIIVLFIVVSAQHINLANWHPFLPYGYKGIFTGASAVFFSFLGFDALATSAEDAKD
VDKNIPRAIILCLVISTALYILVSLVMTGVLSYKDLNVSEAMSYVLLAKGHKYVAEIVSLGAVLGIMAVVFAFIYAGSNI
MKSMSRSAFLPQGLAKVNGKTQSPNRAIWLVGLLSAVLAGEFDLHYLALIANIGSLVVFALISLIVIILRYRYPELKRPF
KVPFGNVIPVLSVLICIVLLVSISLNAWLTYLLWLVVGLGVYFFYSLRHANEFNFQDESDIPGN
>SEQF1778_EEI66440.1 2-dehydropantoate 2-reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQLDDMLKRCEHFLKDQYTMTAMNGMGHVKKLLKYFPKEKVVAGTALVATILTKPGEVEFVGERGMGTTNWANYTEKPDE
KTQALMAELKKANFNPSLKDDFMGTLMAKVVFNSVVNTLCTMFEITMGEYAAFDKADELSRQLIDEAYDVCERAGVQLVN
TRAEELESVNYVSKVGCPHHYPSMYQDMSHNRPVEVDYINGYFVKLGRQYNYEAKTHNFVTNLVHLAETTRQNRSAK
>SEQF1778_EEI66441.1 putative 2-dehydropantoate 2-reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFTVVGAGAMGLRFGVLLQEAGNEVDFVEGWLPHYNKM
>SEQF1778_EEI66442.1 hypothetical protein HMPREF0534_0213 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKSHIGIGVVIVIVILAIIGGAVWRQQKHSKYMQSTTPTLFFHGGGSSYHAEEHMVNAAKKAGVTSTVLRADVANNGKV
TLHGSMHKGAINPIVEVNYDNNRQLDFNKHGEYATNVVKALQKRYRITKINMVGHSLGNISIIYYMLQNGKNQNMPQLQK
QVDIAGHFAGLNFKQVPAAIQQPVGMKLNKDGKPNEMNATYRQMTEIWQTYPKGQVAVLNIIGDVGNHSDGTVDNASSLS
LKYLVAARAKSYCVLKITGKDAQHSKLHNNAQVDKALINFLWGK
>SEQF1778_EEI66443.1 serine-type D-Ala-D-Ala carboxypeptidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKLTVFILSLFMMLMVGSQSVLANNRIDASAAIMADASTGQIIYKQNVDKALPVASITKLLTILVIEDEIQQKQLSWDT
QVKITPEIAAISNDAAYSSIGLKSGQSYSVRTLINAALVKSADGATVALATATGDGTDEFNLKMMQKAKKIGMTKTNIVN
SVGLDNGDMKSFKLADLPNNAANTMSARDVAILSQYFVKHYPELLQITAQKEVKFQIAKDQVKTEKNLNKMLPGEQYAVK
GVTIDGLKTGTSDSAGACFASTGKYQGHRIITVILHSKGSNKDNRFKATQDLYKILKTEDHLQKIKVPSSVTTRKVANGV
EKTMKLTPQHVTIWSPYDTKTNYTIGTQYKKKKLEAPIWKGERVGNLRITSDQLETLNGEPLTYSLYSANDVRRGNFWQR
LLH
>SEQF1778_EEI66444.1 hypothetical protein HMPREF0534_0215 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKELKSLLFISTGLFLIFVLIFNLYTYNAASFIPQASKTSQILSQNRLRAPNIHRSSENWAYPKIGNAPIELIAIKQAK
RILVINSNKRQVIYIIHAQINLPAQKNSFRLLHARGQQIYHINGSQQAIAKNWLGITNGNYIETPVTDMNNHQVSRNLRK
APKIENTIQVSIPDAKWLQTLPENTPLIVKEDY
>SEQF1778_EEI66445.1 hypothetical protein HMPREF0534_0216 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISRLKHGRFFNHLLGSNLILLIIISFYNLLTYFIPLIKISIIQIILFFLIIDLLLIIFKILALYN
>SEQF1778_EEI66446.1 ErfK/YbiS/YcfS/YnhG [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLRVKHWIYGIFCLLVAIIAIGPELRATSNAHPQKAVVELQVKEKPTQEKKIDNSESHMRTPIDWHKSSETVPYPDLNK
VKDFWIKVDLKNNRTYLYDGSKVIYTMYSTGGIYKKDPKTGKLKSVTPTGTFYAQQERGDSFFNQSLKEGANYYVSWKNH
GEYLFHSVPTKADGKYNEQEAAKLGKTQGSHGCIRLSVPDAQWMEKNLPVGTKIEIVG
>SEQF1778_EEI66447.1 hypothetical protein HMPREF0534_0218 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLARKISFDHLWLMVYDQILDMNEKNDVIVESSRLLRKICINDSNNKEKDSS
>SEQF1778_EEI66448.1 hypothetical protein HMPREF0534_0219 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHSYIKYWIAGIGALLIIMIAGMTVHQKNHFNKNVTINNIAVGGLTAKQAFDKVKGTSGATKVYVDNKLVYQTKSMKANF
SNNDEQKFNQALKKQFTFFPSYKATNLSIKPDNFDQDSFNIAKNKLTNEVHQLNTSRKAPVDAYAVYQNEKVSVVPAVKG
NKYDLQNAVNQLNNQAGSTKINITLHKEQPIAANSKTVKNEEKQLNKLKGKKVTYLVQNEKYNLTTNQIITRATYQNGKY
HFDTTALNKQVKKINEKHATLDKPFKFRTHSGAEITTTANGSYGWKISEKKAGNSLTKAIIDGRQEVDGEHDIEGKGYNT
AGLGYNVTSNNGIGDTYAEVSLADQRAYFYKDGKCVLETDIVSGTNNEGNKTPKGVWYIMYQQSPSVLRGQNDDGSSYAS
KVNYWSPFTLTGCGFHDASWRHNWSKTAYLSDGSHGCINMQPSVAGQAFHDLKQNEPVIIY
>SEQF1778_EEI66449.1 YjeF-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTDKIVTSEEMRHYDSYTINTIGIPSLVLMERAALAVRDEILHAFPIALKDVVVVAGSGNNGGDGIAIARLLHLAGVHVT
ILNIGNPKHASAEHQTQEKIAQYYQIPETSDLAVLNKATLIVDAMFGIGIDRAVKGAYADAINAINNTDVVVVAVDMPSG
INTDTGEVMGTAVRATTTVTFAYNKVGLTKNAGKDYAGNIVVANDMGTYAVD
>SEQF1778_EEI66450.1 hypothetical protein HMPREF0534_0221 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELTTKLFIDVKNFEKYQSMLKYQVHIEEERHGDYCLPGFPDRHNFHRLLRILRKHDDGLTSKQLIYDFDYRPSDLEDAT
KALVTNNLSTTTPINEEDYKIQLNTEGIEVADNLLKRRDKITEAAYHTLSENE
>SEQF1778_EEI66451.1 histidine--tRNA ligase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDYQKPKGTADILPGTTSIWEKVEQNAREVFNQFGYRGIRTPMFEDYHVFSRNVGDTSDIVEKEMYDFHDKGDRHIALRP
EGTAGVVRAYVENKLYGPEYPKPYKVYYMGPMFRYERPQSGRQREFHQIGVEALNNESPQIDVEVISMAMALFKKFGVPN
VKLVINTLGDKKVREDYREALINYLKPHYDELSKDSQERLYKNPLRVLDSKDEGDKKIVAEAPSILDYLDEESQAYFDEV
QALLNKLGIDFEIDTNMVRGLDYYNHTIFEIMSDSPVFGGGYTTVCAGGRYNGLISQLGGPEEGGIGFGMGVERLMLLLQ
EENPAFAPQDQLDVFFASADQQGDEMAFEVLSKIRQQGIVADKDYSGVKVGKQIKEAFRRNAKYFAVFGAREVEEGTFQL
KNAATKDATTIKISDFVANPAEYLK
>SEQF1778_EEI66452.1 transporter, major facilitator family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEQQTVKLKWVALASLLNNTGAAFLWPLTTMYLHNYLGQTLTTAGFVMLIMSIAMMIGNYLGGWLFDHWKQYQTAILGVS
LSTLAIFLLIFIHDWPWYAVLITINSFGDGINATIVNSYGTLVSDHSSRYVFNYIYMAFNIGVVIGTLLVGVLLPISVVV
VFAVATIFYALLMLVVVLTFNVAVDAIKNNSEIQEHYHVSRQLHSRWIVLVWFILINYITVHLSYSLWESVMAVHMTNMG
IPFYAYSMLWTLNGVLIIIGQPLVNKLSPYVRLSTQIIVGIFIFALSFLLLIFARTLTAFVIDFVILTIGEMTSFAGLPA
WIAQLTNVDEAGHYQGLLNIMMSVGRAIGPLYGGFVIEKGSYQFLFISVFCLMTGTLIIICLYLWYLHRVQRRLNLDK
>SEQF1778_EEI66453.1 hypothetical protein HMPREF0534_0224 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSWNWLGWLSWICAIAFFCYVIHYIRVKQLMLIAKTKKVFKLNLLIRYVILLVVSLCWLGEMSYLTFFRPVDINNHQQTQ
TSITYRPLQMGNKSDDFYYVLATRSKSGKHPIVSYTYWAGNDKYTTNSRYGSVADGSRIVTLDASALPWDKKQLEKEDAK
TGHAFAAVMDVKYKNTAINGLGLKANHSAVTYTLLRVPSSDMVSER
>SEQF1778_EEI66454.1 hypothetical protein HMPREF0534_0225 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNLSELAQELINFERENDLNDNEVAFGSHLSVERIHEIKSSNTPVTSEEVELLQRFMQSK
>SEQF1778_EEI66455.1 transcriptional regulator, LacI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVAKLKDVAQLAGVSVTTVSRVINNYGSLSQKTIDKVHAAMRELNYQPNALARAMQGKPSKFVGLIFPNLINPFFAELAN
ELEHELFKKGYKTIIASSAQNPEIEHEYLNMLMANQVDGIISGSHNLGIEEYHQLTAPIVSFDRYLADNIPIVAADSYHG
GELAAKYLVEHDVKHLAVIVDEDTSVSPTINRIQGALDFLNKQKRDFEPLAIQDLDLEATFPGNYDGVLASNDVQALTIS
NLYYQAGKQINKDFFITGYDGSRLIRKVAPYLPTVIQPIPLLAQELIETLMKRIETPHEEIETKLVPVEFYQPK
>SEQF1778_EEI66456.1 KxYKxGKxW signal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNRQSINDPSTHFKMYKSGKKWIFAGLTAVTLLTASGAVAHADDASVSSAEPAAAATANTQNNTNSTADSSAATQSTSNS
ASTGNSATSNASQTVASQTAADSALAQSAEAKQAAPAAPKAASAVAASQENSTTDLSALHFSNNASQQAFIQSVAPGAIQ
GWNEYKVLPSITVAQAIVESGWGRSALSTQAHNLFGIKGSYNGNSVVMRTREVYGGRSVYVNANFRAYANNSESVTDHGR
FLNVNSRYRNLLGDTNYASVANKLRQDGYATDPSYASTLIRFVQTYNLNQLDAVALSGKVVTNKQTESAQTPETNVTVSN
TGYYTVKGGDTLSRIARQFNTTVNKLATLNDIRNVNRIYVGQRLLVRQPAEQQQQQTTPKRTETNTTTNSNTYTVKSGDT
LSGIAGKFNTTYTQLAQLNHISNPNVIHVGQVLTLHQTTAQNTTNHQESQQNKQVTTSANGTYTVKSGDTLSQIAARFNT
TTSALASTNHISNPNLIEVGQQLRINNSASAQKTTSRHSNTNNGNYVVQSGDSLSKIAAYHGLNWRSIAAKNNIQSPYTI
FVGQHLSL
>SEQF1778_EEI66457.1 transcriptional regulator, ArsR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTFIVVDRWTTDIPNVNKISQLFKLLGNPKRLQLLYLLIQHSMSVSEISMKLNWEQSGVSHQLQLLRKYNLVQQRREGKT
VIYHLEDPQVMTLIADVLSHAEKIIQ
>SEQF1778_EEI66458.1 hypothetical protein HMPREF0534_0229 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTIYVHNNNQSQNITCSDGSQGVLQVSKLNNAMRYSFKFYSHAHLGFWLDKHQFYDGKSLIVKGVLEDERLEIKFIN
>SEQF1778_EEI66459.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAFLELKNIYKSYYLDKEEFPVLKGIDLQFDRGEFVSILGESGGGKSTLMNIIGGLDRNFEGEVLVNGKILDHKKEKQLD
SYRRATVGYIYQSYNLISHLTVLDNVLVALDMTTLTKEDRRKRALELLDKVGLSEQVKKHPNHLSGGQKQRVAIARALAS
DPQIIIADEPTGALDAQNTKEVLALLDEIARDGKLVIAVTHSQEVADNGTRIVHLADGKIDGDERLRPAYPIPEDPTEIT
PRVLPAMASYRTAFKHLTYNFWRNSLIMLGTAIGIFAVLLFSGLGNGINGYIQNQINSLANPQAITVFKNTTGKKMTQEQ
IQSSLGQTMAANPQSMTISDHNIDRLRKLDNVSSVQPGIMVSAFQLDYNGKKQSGTSLSTWSKAITSDSIKQGHKPKNGE
IVLTKQQAIQLSSAKNYKQMVGKTIRLSFTWIDANNNPVPVSGNFKVAGITEGASAGTSITYSTMRALLQKANASTAANF
ATVNVTNLDSVQGVANKIDNLRGSNNKRILGAITVGSILKTINTYVSLASTVLASIAGISLLVSALMIIVTMYMSVSERT
KEIGILRALGERKKDIRRLFTSESVFIGLFSAILALLIVAVVTVIINHALYGLIKYNIVQITVGNVIFAIVIAIVISFIA
ALLPARRAANLNPIDALAAD
>SEQF1778_EEI66460.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKLKLVDVNKYYGEGISRVHVLKDVSFFAKAGELNLILGPSGSGKSTFLTIAGGLQTPTSGKVLIDGIDIEKLSSKKRD
ELRLQKIGFILQSYNLLPYLNVADQFKLVDRIKKNGNVSSEAFDELLEKLAIKKLLKQYPSELSGGQNQRVAIARALYTN
PEIILADEPTAALDSNLVKTVGQLFQDLAKKEGKAVIAVTHDLRLREYADNVYELADGKLTLSKNSPDQ
>SEQF1778_EEI66461.1 efflux ABC transporter, permease protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFLALKEMKHEKLHYGLIVAMIVLISYLMFFLMGMMLGLQNENDAAIKEWGTETVFLNKNSNDNLGQSIITRDQLSGKDQ
NNVALVGQAPVVLKEKGASKESAQFIGLDPDQFISREKIKITSGRQAKGNNEIVVDKSLSKKGYHLGDRVTINSQNEKYK
IVGFVNDAKFSVAPVIYGSLPVWQELRELNSSAVASGLFSDNKLSKNTYPDLQHYTVNEYINKLPGYSAQNNTFTFMIGF
LMVISLIVIAVFLYILTMQKISHYAVMRAQGIPARHLIIATVTQSIFLMVCGVIGGILLTLITSVAIPMSVPVIMNWPLI
SLMAVGLIVLGMIGSLLPVRMIIKIDPVQALN
>SEQF1778_EEI66462.1 transcriptional regulator, TetR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPSTTFENLNLQKKELITNALLTEFSQHSLASAQVARIVKQAGIARGAFYKYFTDLTEAYQYLYQVAILEIHIPITRANH
ILAASDYVNQIKAFVDEINGSKYRDFMRLHFQTNEGLLRDNTQPQIKIHSAQEWSVMVLSHETIKDCLLQPDKQNEAIER
LSKALTALLQ
>SEQF1778_EEI66463.1 putative chlorophyll synthesis pathway protein BchC [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKALVLTGKKQLEIEDIKEPEIKPDEVLIHTAYAGICGTDKALYAGLPGSASAVPPIVLGHENSGVVTKVGSEVTNVKPG
DRVTVDPNIYCGQCKYCRTQRPELCEHLDAVGVTRNGGFEEYFTAPAKVVYPIPDDVSLKAAAVVEPISCAMHGVDLLET
HPYQKALVLGDGFEGQLFAQILKARGIHEVTLAGRSDEKLENNRKHFGVKTINTTKEEIPADAYDIVVEAVGLPATQEQA
LAAAARGAQVLMFGVGNPDDKFSVNTYDVFQKQLTIQGAFINPYTFEDSIALLSSGVVDPLPLFSHELDLDGVEDFVSGK
LGKVSKAVVKVGGEEA
>SEQF1778_EEI66464.1 metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MISNLINKTQTKGGFGVDDTKNQHRKHKLIEYANGKSLEEINGTVEVPRGKGFWRTLFAYSGPGALVAVGYMDPGNWSTS
ITGGQSFQYTLMTTILISSLIAMLLQYMAAKLGIVSQMDLAQATRARTGKALGIILWIMTELAIMATDIAEVIGAAIALN
LLFHIPLIPSVFITVLDVLVLLLLTKIGFRKIEAIVACLILVILFVFAYQVALSNPNWGGVFMGLLPSAKAIAQHPEISG
ITPLTGSLGIIGATVMPHNLYLHSAISQTRKIDHNDLDSIRQTVRFTTWDSNIQLSLAFIVNALLLIMGVAVFKTGAVQD
SSFFGLYDALNNTSMLSNPILIAVAKSGVLSTLFAVALLASGQNSTITGTLTGQVIMEGFIHMRMPLWARRLVTRIISVI
PVIACVAMTSGENTIQQHTALNLLMENSQVFLAFALPFSMLPLLMMTNSEVEMGEFKNSGWVKACGWISVIALTFLNLYN
LPATYEGFGIWAKGTSDVLAYITIIVILALLIWTCVELYKGDKRFAAEGKGFGQREAQMKDSAVED
>SEQF1778_EEI66465.1 transposase, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
FNALRDMIKKAQKPIIYFEATGIYSRVIEHFCETNGLRFCRLNPLELHLKSESLRRVKTDQKDAHRIALTVQENAFRLTV
PWKKDYLQLHELSRFYNQLNADWNYRLNHLHTALEQVFPELKQLFVNRTSKLALNIVELFPHPALVRPYSRVKLKNILMA
STDKRISKMKAYKYADRLIDLAQKSYPAVSGDAIQVDEVRYYARQLIALTRKREEVIKRMESIAQRLPEYILYCSFPGIG
KQTAAQLMGELGDISRFDNANQLNAFVGIDIRRYQSGTYLGQDHINKRGNPIARKLLYFTVGNMIRQQHANSNHIVDYYY
>SEQF1778_EEI66466.1 hypothetical protein HMPREF0534_0211, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
SPSDTMKSPNHIEKKVTSMDNDTRTLLNLTDPHLNFPHHWLKYKVIKNVRVAQISCTLSYTPRACPNCGVINRGQILKYG
FYQAKHKYDQFRNQPL
>SEQF1778_EEI66467.1 hypothetical protein HMPREF0534_0142, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
TLIWYGLTWSLELYQQTNARLWRQGQRQPVVIHHIITEGTIDENILAALKRKDKTQLALINAVKANLKGSVVA
>SEQF1778_EEI66468.1 hypothetical protein HMPREF0534_0143 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIMWNYLDKRRATVAALKDYDGMKFIIDSYQDELKLAKEQMVGVSSPRYGFSPSGSKKDNPTEHRLLHGIDQTTKLNER
YQQAQLYFKWFEPAWQELSDDERFVLDVCYRTPNQSMNEGLTIMMDKYFIAKTTAYNRKNKSLDHLTLLLYGSHH
>SEQF1778_EEI66469.1 HNH endonuclease domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPYSPKKPCRYPGCPRLTHNTYCDAHAKQVSSHYNRYQRPKRSRPRYHRGWPKIRQRYLLHHPFCEMCLSQGRYTKATEV
HHVLPLEHGGTNEFKNLMALCKPCHSRITAQMDDRWHKAPRQYHY
>SEQF1778_EEI66470.1 hypothetical protein HMPREF0534_0145 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKDGTNRGGARVGAGRKPKSLHDKLADGQEANVIDLPEPANLEGHVMPPVKKYLKAEQKSGLEFDAADIFKETWQWLVE
RGCERLVNSQLIEQYAVSVSRWIQCEECISKFGFLARHPTTGNAIASPYVAMSRDYMKQSSQLWFQIFQVVKENNAVAYQ
GTTPQDDVMERLLRTRKGKY
>SEQF1778_EEI66471.1 DNA (cytosine-5-)-methyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQIIKQKINKLIPADYNPRKDLKPGDPEFEKLKRSIHEFGYVDPIIWNKQTGHVIGGHQRLKILQDEGLTEVDCVVVDFD
EAKEKALNVALNKISGAWDQAKLGLLISDLEASAFDVSLTGFDESEIADLLETDSNTKDDNFDVDAELKQPTFSQAGDIW
HLGRHTLFCGDATKAESYQKLLGKTQVNLVLTDPPYNVDYQSKAGKIKNDHQASDKFYQFLLDAFQNMNQAMADDASIYV
FHADTEGLNFRRAFQDAGFYLSGCCIWKKQSLVLGRSPYQWQHEPVLYGWKKTGKHEWYTGRKESTIWEFDKPKKSKEHP
TMKPIPLLAYPIMNSTMTNCTVLDPFGGSGSTLIACEQTKRTCFMMELDEKYCDVIIKRYIEQVGSVQDVSVERYGKTIP
YSEVVKRDK
>SEQF1778_EEI66472.1 hypothetical protein HMPREF0534_0147 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIINFGVTGKNRKQLVTAIANFTNCKAEYQYTPTYAYKIGPYTVTQNGELVYQEENIQPLLIDLAKQGFNPKDDKINLKL
SYNRQNFDESSLDHLRQLIWAKGNLIKKALAIDSLPLEVTDEKVSLDWFKEIDPKESEAYQLFLNHLVDYAKKRTRVITQ
PREYENPRYAFRCFLLQLGFIGPEYKEARKILLSKLHGSCAFRKEATNHA
>SEQF1778_EEI66473.1 hypothetical protein HMPREF0534_0148 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRRIEDELAKRDRIRKQVLTIRDTGEVNMFDVPNVERLAYYYNCHDLIEYIHEDRAGYLNLIMTGKFN
>SEQF1778_EEI66474.1 putative phage terminase, large subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKDSTYDKDAADFAVSFIECLCHTKGTWAGKPFELIDWQEQIIRDLFGILKPNGYRQFNTAYVEIPKKQGKSELAAAVA
LLLCCADGEERAEVYGCAADRQQAAIVFDVAADMVRMNPALKKRCKILASQKRLIYEPTNSFYQVLSADAYSKHGFNVSG
VIFDELHTQPNRKLYDVMTKGSGDARTQPLYFLITTAGTDEHSICYQVHQKALDIMEGRKHDPRFYPVIYGADREEDWSD
PEVWKKANPSLGVTVAMEKVKDAYNSAKENPAEENTFRQLRLNQWVKQDVRWMPMDKWDACAFPVDPNQLRGRPCYGGLD
LSSTTDITAFVLVFPPLDDSEGFTLLPYFWIPEDNVDLRVRRDHVPYDIWKQQGFLQTTEGNVVHYGYIEHFIEELGKKY
NIREIAFDRWGAVEMVQNLEGMGFTVVPFGQGFKDMTPPTKELMRLTLEKKIAHGGQPVLRWMMDNIYIRTDPAGNIKPD
KAKSTEKIDGVVATIMGLDRAIRNEGGDGDSVYDNRGLLLI
>SEQF1778_EEI66475.1 hypothetical protein HMPREF0534_0150 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNHEQGKAPIDISLLTKEQFDNEIQKGFSDFENGRTFTAEQVQAQLLKHENDN
>SEQF1778_EEI66476.1 hypothetical protein HMPREF0534_0151 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIIREVIFMDKIPTAEDWVELLKNYPVEDIEIDENGHYDPEKHPEFHDWMVNG
>SEQF1778_EEI66477.1 phage portal protein, HK97 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSIFNKLFHTNKASPKNTLSSTMSFLFGSTTAGQNVTERTAMQNTAVYACVRVLAESLATLPLHLYQLTDDGGKQRVNDH
SLSFLLHDAPNPEMTSFIFRETMMTHLLLWGNAYAQIIRNGQGQITGLYPLMPDRMDVNRARNGELYYTYTRNYDDYQAK
DESKQVVLLSDEVLHIAGLGFDGLIGYSPIAMAKNAIGLSLAAEQYGSTFFKNDATPGGILEHPSVVKDPERLRKSWQSQ
FSGPSGHSIAVLEEGMTFHQLSIPPDQAQFLDTRKFQLDEIARIFRIPPHMIGDLERSTFSNIEQQSLEFVKYTLNPWCV
RWEQAMNQQLLSKEEQGRYFIKFNVDGLMRGDYESRMNGYAIGRQNGWLSANDIRELEDLNRIPTEDGGDEYLVNGNMLP
VKDAGQFYQTKTTGSDQA
>SEQF1778_EEI66478.1 endopeptidase Clp [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRFWNWSSENNTPTLTINGTIAPDSWIDDEVSPQVFQDELNQSCGPIDVWLNSPGGDCVAASQIYTMLMSYPNDVNVKI
AGIAASAASVIAMAGTKVSMAPTALMMIHNPLTIAAGNRSDMAKAIQQLDETKESIINAYEIKTGLPRGKIAALMDEQTW
MNPNKAIELGFADEVLNAESVSDSYTYSEHQSTLQILNKLQSKNHYPIESLQRRLFLLPH
>SEQF1778_EEI66479.1 phage major capsid protein, HK97 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKLTELQTKRAKIWQQAKDFLDEKHQESDVLSAEDNATYEKMEADVVSLGKEIDRLTKQMEIDNQLKLPTSQPLTTNPA
TDKQGLVTNYSQDFWNLMRGQAPVTNALKEGTDPDGGYLVPDEFEKQLIQKLHEANILRSISHVIKTNSGEHKIPLVATE
GTAAWMEEEAAYTESNTQFSQVSLGAHKLGTLIKVSEELLNDSAFNLMGYLSEEFGRRLGDAEEKAFLTGTGSGQPTGIL
NDTTGATLGSTAKSATDINFDDLIDLFYSLRAPYRKNAVFIMSDDTVKAVRKLKDKNDQYIWQPSVQAGQPDRILNCPVL
TSQYMPTLAASNKPVLFGDFNYYWIADRQGRTFKRLNELYAVTGQVGFLGSQRVDAKVILPEAIKYLSMAAK
>SEQF1778_EEI66480.1 phage DNA packaging protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEIVSLDEAKTYLRIDGTSEDQLITRLINSATTIVENILRQPLSSFDQVPEDIHTAVLYCLAYLYEYRETADFDAMVKFL
RAILTPYRKEAF
>SEQF1778_EEI66481.1 putative phage head-tail adaptor [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQKQNNRTSKIADIGELNQRIQLMKIETYGRNPNTYQPLERNVVFANVWAKVSALHGQEYYTAVSVKLEKQLSFIVRYRP
DIDEKTNIWFDGRGYNIGFIDNVKYRNEYLEIKANYSKGVRPPNED
>SEQF1778_EEI66482.1 toxin secretion/phage lysis holin [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKISISAFPINSWFGIVGAFLGWFLGGLDDLLYVLLIFMAVDYLTGVLCAISERKLSSEIGFKGIMRKVLILVLVGIAHA
LDVYLLKNGSAIRTATIFFYVSNEGISLLENASRLGLPVPEKLKEVLKQLHGKNDDHNDQ
>SEQF1778_EEI66483.1 hypothetical protein HMPREF0534_0158 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDKPKMEFKITTQEIIDDLHYHQAQAIAEDFLARGLINQSQFEEIEKLNRQSFPPLLAELMV
>SEQF1778_EEI66484.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASVTKLTKPQSKVQATLQVAAYCRVSTNSDEQEDSLANQQDHFKSYIQQQPNWLLHKIYYDNGISGTKAQNRPGLQALL
KDCQNGQVDLVLTKSISRFSRNTTDCLRIIRQLKQLDIPVIFEKENINTDSMDSELILSVLGSLAQDESQSIAHNVRLGY
QQRASNGVFHYSLPPYGYQKDANRDLIIDPIERKVVLRIFNWTIEGKSPGQIAQTLNEQAISTKRNGKWHDSTIRGILQN
TVYLGTTEFQKTFTDDEYHRHPNQGEQGKIIIEEHHPAIIDQATFTQVQKIIMLKRKFYPQAKAKPQRHTFSRKIYCGNC
QKLFKRQSRSGKVCWGCQTHIKSAKDCPVKSIREDALHLAFCTMVNKLIFSQKFLLEPLVEQLQADQNQEQAAKLSQVET
ELKEAKDKQDNLQQLRKQELIEKDFFTKQDAELEQEIANLQSEIERLKQLLGDQNSKLPLTHELLKLCQRSNYLTAFNAE
LFEQIIESITVDQDHNLTFHLKCGLNLTEGSKHHVKA
>SEQF1778_EEI66485.1 recombinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKLKYGYQWQAGQIVINPDQADVIKQIFAGFLAGQTRNHLARQFNLTHTSVLRILTSNKYVGGDGYPQIITTTNFKQVQ
KQLKKQIVRKPKKQPTPPTKFYRGIINRYSDDAFKQAEHIYQLIYSEVEVYGES
>SEQF1778_EEI66486.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKVRIIPAQVKQGNRNRQIEESEAKLKVAAYCRVSTLYEDQASSYETQVAHYKEFITKNPKWELAGIYADDGISGTDTK
KRNQFNQMIDDAKQGKIDLIVTKSISRFARNTIDCLQYIRELKELHVAVFFEKENINTMDAKGEVLITIMASLAQQESES
ISRNIKIGLQYRYQRGQVIVNTARFLGYDKDDDGNLVINPEQAKVVKRIFYECLTGKSAIEIARELTKEGIKNGIGRTQW
HSSGIIKILRNEKYIGDALLQKTYTVDFLTKKRVKNDGQVPQYYVENNHPAIISRAVFYQVQKLLDMRREGFTTEGGHHH
GYTNAYCFSSIVYCGRCKDIYTRCVWYRPRIGEVEKVNVWRCYSRLHWNHKGKRCMGRTITEADLEEASLKAMNELIQQH
QLADKQIAANILKVTKGTTGPSLDELDQQLEDQQLLLLNMSTHNKNVEQLTEQVQALRKQREQLIQQEIDHDIKRSNLKN
IQSFFQTYQGGLTKFDEKLVRLLIEKITIFKSKIDFTFKDGEVITVKM
>SEQF1778_EEI66487.1 hypothetical protein HMPREF0534_0162 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKNDVKLQTKVNNDLRTEREQQYRRIIKRHRAAWLVLFIATIAPTDYSLAHQLIWLHYIFVALFAATTISMGYWYHRLN
QLLHPKN
>SEQF1778_EEI66488.1 hypothetical protein HMPREF0534_0163 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYGTGNVDLIGFGLSGDQFPQTTCKIGLISGRPIPAISVDMFPQIELINFHKESDSFLQLDDIITYQLITKGAE
>SEQF1778_EEI66489.1 23S rRNA (uracil-5-)-methyltransferase RumA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVCFVIIGEVCNVEINGGITLKLNIPVHKNEEYPAKVVDLSYEGNGVVKIDDFPVFVPNALPGEEITVKITKVTSHFAW
GRVMDWQTKSPDRVDVKDKKYIQTGIAPLGHLKYDAQLKFKQHQIQELLAKAHLDEIEVLPTMGMEKPYHYRNKAQVPVK
MVHGQLETGFYKRGSHNVVPIEDFYIQDPEIDKAIVVVRDLLRQYHITPYDEQTGKGVIRTVMVRRGYYSHEMMVVLVTN
TKRLPMEKQIVDGIVAGVPEVKSIVQNINDKRTNRLLGDKNKTLWGADEIHDQLLGIDFAISPLSFYQVNPQQTERLYQT
AIDNAGLDGNQTVIDAYCGIGTISLAVAKHAKQVYGVEIVPAAIEDAKHNAKRNSIKNAKFVVGKAEEQFAKWQAAGLKP
DVVIVDPPRKGLAESLIEATGKMGPKKVIYVSCNPATLVRDIKRFADQGYHVTKPIQPVDQFPQTTHVESVTVLERKK
>SEQF1778_EEI66490.1 lipid kinase, YegS/Rv2252/BmrU family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTVRKRARIIYNPTSGRETLRSDLVDILAIYEKAGYETSAFATTPAPNSAKNEATRAAEDGFDLIVAAGGDGTLNEVVNG
IAGLEHRPTLAIIPAGTTNDYARALRIPRDDPIAAAKLILKKNKKFKIDIGRAGENYFMNIAAGGTMTELTYEVPSQMKS
LFGYAAYFAKGAELMPRIKPVDMLIKYDNQEYRGGASMFMIALTNSVGGFEQIVPDASLDDGKFTMIIVKKSSVIDMLSL
MAKALQGKHLDDPRIIYAKATDIEVIPLNKDDRLMVNLDGEYGGDAPMKFHNLKQHLEVIANLDEIPEDAITTSADFKRV
EEDFMNGIDDYKDRKKK
>SEQF1778_EEI66491.1 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNFQTTIGLEVHVELKTNSKIYSPSPVEYGDQPNANTNVIDWGYPGVLPSLNKGVVRDGIMAGLALHAQIAHHMHFDRKN
YFYPDNPKAYQITQSDTPIAHDGWIEIEINGKKKKIGIKEMHIEEDAGKNTHTSKYSYVDLNRQGTPLIEIVSKPDIASP
EEAVAYLEALRQRIQFTGISDVKMEEGSMRVDTNISIRPIGSDKFGTKTEMKNINSFNYVRKALAFEEKRHQKVLMAGGH
IGQETRRYDEATGETILMRTKEGSDDYRYFPEPDLPPVNVSDEWISEIESEMPEMPGERREHYVKDLGLTDYDAMVLTQT
KEMSDFFEEAVKNGGDPKRVANYLMNDVNSYLNDKQVDLQDTKLTPANLAGMVKLIEDGTISSKMAKKVFKGILDGEEPN
AYAKEHGLVQLSDPAQLQPIVDEVLDNNEQSIEDFKNGKDRAVGYLMGQIMKQTRGKANPQVVTQLLMKSLKAK
>SEQF1778_EEI66492.1 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDFYQTSLSQLHDDLVNKKISATELTKETFDHIKGNEDQVKAFISLNEDQALKRAAEIDAKGISADQLTAGVPLAVKDNI
LTKGLTTTAASKMLENFNPVYDATVVEKLNAADYINVGKTNLDEFAMGSSTENSAFFTTHNPWDLTRVPGGSSGGSAAAV
AAGDVLGALGTDTGGSIRMPASFNGVVGMKPTYGRVSRWGIIAFGSSFDQVGWLTQNVKDNALLTALISGNDERDMTSSL
KEVPDWAAQLNENTNVKGLRIAVPKEYFDGLDEDVQEVIKAALDHLESLGAIVDEVSLPHTKYGVPAYYILASSEASSNL
QRYDGIRYGFRAADVKNLEDVYVRSRSEGFGEEVKRRIMLGTFSLSAGFYDAYFNKAAKVRRLIAQDFEDVFKDHDVIVG
ATGASTAFKIGAEIDDPQTMYMNDVLTVPVNMAGLPAMSIPAGFSAKNGMPVGLQIIGKAFDEQTVYNTGYVFEQTTDFH
KKTPKLGGQN
>SEQF1778_EEI66493.1 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASKITEQQVEHVAELAKLEFPKDELGKFTTQLGNIIDMFEDLEAVDTDGVEPMTSATDRVNVMREDKAIKSSKDEQEAL
LNNAPETDGGYIKVPSILDESEDGE
>SEQF1778_EEI66494.1 CamS sex pheromone family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKRKAKKIAVSAAVLMCTVLLASCGFGGKSSSKNYSTTGSSNGTYQGVIKNGRYRTSKARGINVSQNDNQYNLKSFESGL
TQVSKRVFSTKSYIFQEGQYLSSGTIENWLGRKTKSNPEGLNPAQGKKSNPNPVYIQQIEEQDYMQESGNSMKLRGITIG
IGINSEYNYQTKTGGPTLTKKISDSEVRRQGEIAAQKVLQRVRKKSGVGNVPIVIALYKQAPDDSLVGGTFFAYSKNSGN
TISSWRKLNYKNVVLPKASASTTNSSDQTDDDSFSNFKSQIQSFFLNLSGVTAQAQYENGTLSGMHITVTTQFYSQSEIT
SFTQYITRAAKKYLPNGIPIDIKIQSDSEIQAVVYRNAGSDNFQSHIFDSY
>SEQF1778_EEI66495.1 DNA ligase (NAD+) [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSQKQTPVKELTLQEAQDEIKPLRAKLTEWGKEYYEQDNPTVEDHVYDRAYQRLVQLEEQFPQLLSADSPTQRVGGATES
QLTKVRHEIPMLSMGDVFSIEELMDFNQRQQENRDVEVEPEYNLELKIDGLSLSLVYENGKLVQGSTRGNGTIGEDVTAN
VRTIKSVPAELPEPLSIEVRGECYMPKAAFAKLNAKREAEGLPVFANPRNAAAGSLRQLDPKVTAQRELDTFIYYVPEYQ
KLGVKTQAEALDRMRELGFNVNLNNRVVHNREEIEKYIEEYTAQRDKLTYGIDGIVEKVNDLDTEVALGNTVKVPRWEIA
YKFPPEEQATIVRDIVWTVGRTGNVTPTAVMDPVQLAGTTVSRASLHNPDYLREKDIRIGDTVYLHKAGDIIPEISKVDL
TKRPADSVEYEIPTKCPVCSSELVHLDGEVALRCINPMCPAQIKEGLAHFASRNAMNIDGLGPRIIEQLWDKELIHDVAG
LYRLNHDQLLTLDKFGEKSTANLLTSIDNSRNNSVERLLFGLGIRHVGAKAARIIMEHFGDLDSLMKANDDEISAISGIG
PTIGESIVTYFANQQVVKLIDELREVGVNFAYLGSRSNANPDSEWNGRRVVLTGKLTEMTRGEAKLWLENHGAKVTGSVS
KKTDIVIAGADAGSKLTKAQDLGIDVWNEQQFSQAMKEEQ
>SEQF1778_EEI66496.1 ATP-dependent DNA helicase PcrA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNGQALLEGMNDKQSEAVLTTEGPLLVMAGAGSGKTRVLTHRVAYLIEENGVLPWNILAITFTNKAAREMKERVGKLLG
ESANEIWVSTFHALCVRILRRDIEKIGYNRAFTIADTSEQRTLMKRICAELNIDTKKFDPRSILSAISNAKNALLTPDDY
SKEANSMFENMVARAYKLYQQELETNQALDFDDLIMKTIELLESDQETLEFYQDKFHYIHVDEYQDTNDAQYRLVNLLAQ
KYQNLCVVGDADQSIYGWRGANMNNILNFEHDYPQAKTVMLEQNYRSTQTILNAANEVIANNLYRKKKNLWTENGQGDKI
SYYRAQNEHDEAQFIVSKIKEEQEKHGYHFNDFAILYRTNAQSRMVEETFLKSSIPYTMVGGHKFYDRREIRDILAYLTL
IVNPADSMSFERVVNTPKRGIGLTSVEHLRNFANENGWTLLKAAQNVDTASEITARTRNKIDEFGQLMANLTKQAEYLTL
TDLTEQILELSGYNKMLSDDRSLEAQARRENLDEFKSVTQEYDEQHKDDDDPNLQKIINFLADLALVSDQDDVDEQAPAV
TLMTLHAAKGLEFPVVFLVGMEEGIFPLSRALMEDDELEEERRLAYVGITRAKKKLYLTNAFSRLLYGRIQRNQPSRFVE
EIDSELLQFENSPSGNSIKDSKLPFDRAAATATTYRDQQKRTYRSAGKRVKPITNTGTGADKVGWKTGDKVEHKKWGQGT
VVKVNGSGNDMELDIAFPSQGVKRLLASFAPITKVQK
>SEQF1778_EEI66497.1 ATP-grasp domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGRDAIYPGSTLGIIGINRNGAALIATAKKAGFNVGVYVNRSQPLVTKMADFTIVGAMNDRTKLTQFGEACDAIIYQTPN
VDSRVMHFLSQYAVIPQGINALEIVQDRLMERAFLDQVNINIAPYMTVVSLDDVYQSIDSIGYPALLKPIQRGIGENSML
IERQSDITRAADFIDTGTYLLESWIEHTNEYTMTAATDGKDTEIFPLAQLHYNDKRQLISVATPANIHDDMLKEMQRIVK
SVAASLEYRGVFSVNFYVTSTGTLYVKNIEPGLTSIANIYDVTANVDQYEEQLRSTVGMPLHVITPLQIGLLMVVRNYQS
RAIQRQWLLKNNWQFRFFNDVGDDDQAILGFVWVTGGDNLAALKNQVDDTEVWNE
>SEQF1778_EEI66498.1 xanthine phosphoribosyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKELEEKIKEYGTVLPGNVLKVDAFLNHQVDPQLMLHIGQEFAKLFANEGITKIWTVESSGIAPAVMTGLEMNLPVIFAR
KHKSLTLNQNMYTADVYSYTKKTTNRISISKKYVDANDKILMIDDFLANGQAVEGLLEIADQAGVQVAGAGIVIEKSFQP
GAGELKERGIRVESLARIQSLSDNKVEFVKD
>SEQF1778_EEI66499.1 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQLITSRKEEAKLVAKRKRRNKNRHTGRNWIISILAVIVIFLGVYVGHHFYRIWNQQRIEQEAREKDRRAKQLFIQQVA
PEAQAMQNTYHVYASITIAQAILESQWGTSQLASQYHNLFGIKGTGANSRVMTTKEYINGKWIVTKGRFRVYDSWSDSIK
DHTRLMLNGTDTNQQNYDRVVHATNYQEAARGLQEAGYATDPDYAQKLISVIKAYKLYNYDK
>SEQF1778_EEI66500.1 acetoin reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MITNIKEELLMTKKVALVTGASQGIGKAIVERLVKDGFAVALVALNEAKLQQVVDELTNNGGEALPLVADVANREEVFAA
VEKTVEHFGDLNVIVNNAGLGPTTPIDSITPEQFEKVYGVNVAGVLWGIQAAHKAFKELGHGGKIINATSQAGVVGNPNL
ALYSGTKFAIRGITQVVAQDLATEDITVNAFAPGIVKTPMMYDIAHQVGQNAGKSDEWGMETFAKNIAMKRLSEPEDVAN
VVSFLAGPDSNYVTGQTIIVDGGMQFH
>SEQF1778_EEI66501.1 ribosomal protein S9 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELAQQVQYSGTGRRKDATARVRLVPGSGKITMNGKAIEDYIPFANLRAIVNQPFAVTKTEGQYDVLANVNGGGFSGQAG
AVRHGIARALLAVDPDFRDALKKAGLLTRDPRMKERRKPGLKKARKAAQFSKR
>SEQF1778_EEI66502.1 ribosomal protein L13 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRTTYIAKPGEVERKWYVVDAKNVPMGRLASAVASILRGKNKPTFTPHVDTGDYVIVINAAQVKLTGKKASQKMYYRHSN
YPGGLKQRTAGDFLAKEPEKLLETAIKGMLPHNSLGHKQGLKLHVYAGEDHKHAAQNPEVLDITNLI
>SEQF1778_EEI66503.1 tRNA pseudouridine synthase A [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYRYKITFAYDGTNFSGFQIQPNKRTVEQTLKNAVNKIAKHPNPAIPVIGSGRTDAGVHALNQVAHFDIPYHLSNESMRK
ALNSILPLDILIKKAELVDNDFHARYSAHRKTYRYRVDQGEFVNPFKRNYTSHFKYPLNLEKMRKAANDLVGTHDFTSFV
ASGSQAKSNVRTIESITIKRDELRNEVVFDFTGNGFLYNQVRIMVAFLLEIGSNQRPVDDVSRVLEAKDRTLARMTAPAS
GLYLVNVDYGTNDEKD
>SEQF1778_EEI66504.1 cobalt transport protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNSKIVFGSYVPVKSILHRLDPRIKLIMCIIYVILIFFVNNFLAAIWLLLALLAAIKLSNVGLRQYWQGIKPLFLIILIT
VAFQILFSSGGKTYWHWGIMAITRDGLINSLIIFYRFIVIITASTVLTATTQTFQIADALAWLMKPLQVIKVPVNQITLM
LSIALRFVPTIMDETNKIMKAQRARGINFNAGNLLTRIKHLVPILIPLFVNSFKRAEELATAMEARGYDPNAPRTHYRQL
VWHKNDAWAGLALLIVTVGLVCIRIFF
>SEQF1778_EEI66505.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKAAITVKKLHYTYPNSTNEALHNVSLTIKEQEFVAIIGQTGSGKSTLVSLIDGLIKPSSGELNVAGLEINATTKTEYL
SKIHHQVGFVFQFPEQQLFAETVAEDIAFGPHNLGWPAKKIEKAVDEALKMVDLPLELKSHSPFALSGGQMRRVAIAGVL
AMDPQILILDEPTAGLDTQATNDLLKLIKDLNEKGTTIIMVTHQMEQVAYYANHVIAMSNGQVVADTTPQQLFRDAQRLK
KLSLTLPVSVEVAQFLSKDGITLKNTEPLTLDVLADEIAEAMRRKRK
>SEQF1778_EEI66506.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTGIKIRKLVFTYPDSKYPVLKNINLDFEPVSWTAIIGHNGSGKSTLARLIDGLLSPTAGSIEVDGIQVNESSLGKIHQH
IGFVFQNPENQFVGATVADDVAFGLENRQVDRNKMEEKIDKALKMVGMSDYKNTAPINLSGGQKQRVALAGILALMPKII
ILDEATSMLDPLARQEILALLQKLKKEYNLSIISITHDLKEIELADKIVVLNDSQVVKQGAPSEILKDKELLLEIGVGIP
ASQRLQKLLVERGIDVPNRYLNLEELKNWLKQQLQ
>SEQF1778_EEI66507.1 ribosomal protein L17 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSYRKLGRTSSQRKALLRDLTTDLIVNGRITTTEARAKEVRKTADKMITLAKHGDLASRRKAAAFVRNVVADVKEDGDDI
RVQSALQNLFEELAPKYADRNGGYTRILKTMPRRGDGAPMVILELVD
>SEQF1778_EEI66508.1 DNA-directed RNA polymerase, alpha subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEFEKPNIHKVEETDNYGKFVVEPLERGYGTTLGNSLRRVLIASLPGAAITSMQIDGVLHEFSTVEGVTEDVTQIILNL
KKVSLKLDSEDQKNLELDVKGPAEVTASDIQGDNEVTILNPDLHIATVADGAELHIKLTADKGRGYLSANDNKARMDDLA
IGVLPIDSIYTPIERVNYTVENARVGQRNDYDKLTLDVWTDGSLTPTEAVSLGAKILTEHLAMFVDLTETAQNAQVMVEK
EETHKEKMLEMTIEELDLSVRSYNCLKRAGINTVKELTDRTVSDMMKVRNLGQKSLEEIKLKLNDLGVSFRQDD
>SEQF1778_EEI66509.1 30S ribosomal protein S11 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATKKGTRKRRAKKNVETGVAHIHSTFNNTLIMITDVQGNAVAWSSAGVLGFKGSRKSTPFAAQMASEAAAKQAMEHGMK
TVEVEVKGPGSGREAAIRALQATGLEVTAIRDVTPVPHNGSRPPKRRRV
>SEQF1778_EEI66510.1 30S ribosomal protein S13 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MARIAGVDLPRDKRIVVGLTYIFGIGDSTAKKILENAGVSEDIRVRDLTPDQEEKIRAQVDQIQVEGDLRREVSMNIKRL
QEIGSYRGMRHRRGLPVRGQHTKNNARTRKGKAVAIANKKK
>SEQF1778_EEI66511.1 ribosomal protein L36 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKVRPSVKKMCEHCKIVKRNGRVMVICSANPKHKQRQGK
>SEQF1778_EEI66512.1 translation initiation factor IF-1 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKADVIEVEGKVTETLPNAMFKVELENGAEILAHVSGKIRMHYIKILPGDRVKVEMSPYDLTKGRITFRFK
>SEQF1778_EEI66513.1 adenylate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSMNLVLMGLPGAGKGTQAQKIVEDFPIPHISTGDIFRAAIKNETPMGIEAKKYIDKGELVPDEVTNGIVKERLAQDDTK
DGFMLDGFPRNLNQAAALDKMLAESNRHLDAVINIHVEPDVLVERLSGRFICRNCGTTYHKLYNAPKVEGTCDVCGHHEF
YQRDDDKPETVKNRLDVNIKLNTPLVDYYQKKGVLHEINGEQDIDKVYEDIKKVLTNLN
>SEQF1778_EEI66514.1 preprotein translocase, SecY subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFTAVKNTFKVKDIRKKIFFTLFVLIVYRIGAAITVPGVNAAALQEISSTGLASILNTFSGGGLENYSLFAMGVSPYITA
QIVVQLLQMDIVPRFVEWSKQGEVGRRKLNQATRWLTIVLGFIQSIGITAGFNALSTIRLVNHPGVQTYLTIGLILTAGT
MFATWMGDMITERGLGNGVSMLIFAGIVAQMPGGIRQLWDDQIAGESGSALWMGIGFVTLVIVAILIIVAFVTWVQQAER
RLPIQYTRRTTTSPSSSYLPLKINVSGVIPVIFAGSFISTPQTILMAFQQNHGGDSWYQIMTTIFNMQSGPGIALYVFLI
VVFTFFYAFVQVNPEKLAENLQKQGSYISGVRPGKGTQDYISSLLMRLSTVGSLFLGLISLIPLIASNVWNLSQSIGLGG
TSLLIIVQIALDVVRQLNGLTMKREYIGFIREPKGGND
>SEQF1778_EEI66515.1 ribosomal protein L15 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLNELKPAAGSRSKRLRKGRGLSSGHGFTSGRGTKGQKAHGKTRLGFEGGQMPLYRQIPKRGFTNINRKEYAIVNLASL
NKFDDGTEVTPQLLMESGLVKNLKNDIKILGSGKLEKKLTVKANKFSASAVSAIEAAGGKTEVM
>SEQF1778_EEI66516.1 ribosomal protein L30 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAQVKVTLIHSVAHRQPTQRRTVKALGLGKINSSVILPDNAATRGQIFKIAHLVSVEEVK
>SEQF1778_EEI66517.1 ribosomal protein S5 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MASSEFIDPAKLDLDDQVVAINRITKVVKGGRRMRFAALVIVGDRKGHVGFGTGKAQEVPEAIRKAQAAAEKNLITVPIV
GTTIPHEVIGVYGGGKIMLKPAVEGSGVAAGGAVRNVMDLAGVADVTSKRLGSNTPVNVVRATFEGLKQLKNAEEVAKLR
GVSVDHLAE
>SEQF1778_EEI66518.1 ribosomal protein L18 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTVVISKPDKNKIRQRRHLRVRGKISGTAERPRLSVYRSNKNIYAQLIDDVKGVTLASASTNDSEVSGKTKTEQASGVGA
LIAKRANEKNITEVVFDRGGYLYHGRVQALAEAARENGLKF
>SEQF1778_EEI66519.1 ribosomal protein L6 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSRIGYKEIDLPSGVEISQDGNVVTVKGPKGTLSREISPLIKMTIDGNVVKFDRDADTNKLKMLHGTTRANVNNMVEGVV
NGYKKVLKLVGVGYRAQLKGNKLILTVGYSNPVEMDKPQDVEINVPDNTTIELSSINKEHLGNFAAEVRAVRSPEPYKGK
GIRYENEHIIRKEGKTGK
>SEQF1778_EEI66520.1 ribosomal protein S8 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSMSDPIADFLTRIRNANMAQHESVEAPASKMKKDIAEILKNEGFIRDVEYVDDNKQGIIRVFLKYGNDGQRVISGLKRI
SKPGLRTYVKSDAVPKVLNGLGIAIISTSEGVVTDKVARAKKIGGEVIAYVW
>SEQF1778_EEI66521.1 ribosomal protein S14p/S29e [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKKSMIAKCNRPAKFSSREYTRCARCGRPHSVYRKFHLCRICLRELAHKGQIPGLKKASW
>SEQF1778_EEI66522.1 ribosomal protein L5 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MENRLKAKYENEIRPALIEKFNYSSVMQAPKIDKIVLNMGVGDATTNSKNLDEAVEELGLISGQKPLITKAKKSIAGFRL
REGMSIGAKVTLRGERMYDFLDKLVNVALPRVRDFHGVSNKAFDGRGNYTLGIHEQLIFPEIDYDKVNRVRGLDVVIVTT
AQTDEESRELLAQLGMPFAK
>SEQF1778_EEI66523.1 ribosomal protein L24 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFIKTGDKVRVIAGKDKGKEGTIKKVLASQNRVIVEGVNIVKKHQKPSNSNPNGGVIDTEAAINASNVMLIDPSTNEPTR
VGYKFVDGKKVRVAKKSGKTLD
>SEQF1778_EEI66524.1 ribosomal protein L14 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIQQESRLKVADNSGAREILVIKILGGSRVKTGNIGDIIVATVKQATPGGVVKKGDVVKAVVVRTKHGIHRKDGSYIKFD
ENAAVLINNDKSPKGTRIFGPIARELRGDDFMKIVSLAPEVL
>SEQF1778_EEI66525.1 30S ribosomal protein S17 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEERNARKVYQGHVVSDKMDKTITVVIDTYKSAPIYGKRVKYSKKYYAHDENNEAKTGDTVQIMETRPLSAKKRFRLVK
IVEKAATL
>SEQF1778_EEI66526.1 ribosomal protein L29 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKSKDYVQELNGLTTDKLLDREKELKEQLFNLRFQLATGQLENTASLKQVRKDIARVKTVLRQQELNK
>SEQF1778_EEI66527.1 ribosomal protein L16 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLVPKRVKHRKVQRGHMRGEAKGGKTVTFGEFGLQALDSHWISNRQIEAARIAMTRYMKRGGKVWIKIFPQLSYTSKGVG
VRMGNGKGAPEGWVAPVKRGKVMFEVGGVSEEVAREALRLAGHKLPVRTKIVQREEVGGQSNEK
>SEQF1778_EEI66528.1 ribosomal protein S3 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGQKINPNGFRVGVIRDWTAKWYADKDFADYLNEDLRIRKYIEKRLADASVSTVEIERAANRVNVSIHTAKPGMVIGKGG
SEVEALRKELNKLTGKRVHINIVEIKKPDLDAHLVGESIARQLEARIAFRRAMRGAMQRAMRAGAKGIKTQVAGRLNGAD
MSRIESYSDGTVPLHTLRADIDYSWDEANTTYGVLGVKTWIYRGEVLPTKKNSNNDEQGGK
>SEQF1778_EEI66529.1 ribosomal protein L22 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAENITSAKATAKMVRVSARKVRLVLDAIRGKSVAEAFAILKFTPRGAASDVEKVLKSAVANAENNFDLDRASLVVSEAF
ANEGPTLKRFRPRAKGSASPINKRTSHITVVVTER
>SEQF1778_EEI66530.1 ribosomal protein S19 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGRSLKKGPFADASLLKKVKEQEGSEKKTVIKTWSRRSTIFPSFIGYTFAVYDGRKHVPVYVQEDMVGHKLGEFVPTRTF
HGHASDDKKTGK
>SEQF1778_EEI66531.1 ribosomal protein L2 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGIRKYKATTNGRRNMNGYDFAEITKTTPEKSLLAPLKHTAGRNSYGHITVRHRGGGTKRQYRIIDFKRIKDDVPATVKA
IEYDPNRTANIALLVYADGTKSYIIAPKGLKVGMTVQSGPDADIKVGNALPLKNIPVGTVIHNIELKPGKGGQLARSAGA
SAQLLGKEEKYVLVRLSSGEVRMVLATCRATIGTVGNDEHALIIKGKAGRTRYAGQRPHVRGSVMNPNDHPHGGGEGKQP
VGLPSPLSPWGKKTVGKKTRSHKARSNKFIVRGRKRGPHTR
>SEQF1778_EEI66532.1 ribosomal protein L23 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEARDIILRPVVTEASMAGMDNKRYTFDVDLRATKTQVKNAVEEIFDVKVVKINIMNVKGKLKRQGRYEGYTKRRRKAIV
TLSADSNEIKLFNDNNEN
>SEQF1778_EEI66533.1 50S ribosomal protein L4 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTSVNLYKQDGSQNGTVELNDAVFGVEPNENVVFDAILRQRASLRQGTHAVKNRSAVSGGGKKPWRQKGTGRARQGSIRS
PQFRGGGIVFGPTPRSYKYSLPRKVRQLAIKSALSQKVLDNSFVVVDALNFDAPKTKEFADVMGNLNVAEKTLVVVTDDD
KNAALSARNLANATVVTPAGVNILNVVDNQKIVITKSALSQVEEVLA
>SEQF1778_EEI66534.1 50S ribosomal protein L3 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKGILGKKVGMTQVFTDNGELVPVTVIDVTPNVVMQIKTVENDGYSAVQLGFDDKREVLSNKPEQGHAAKANTTPKRFI
GEIRDAELGDIKVGDEVKADVFAEGETVDVTGTTKGHGYQGNIHKDNQSRGPMAHGSRYHRRPGSLGAIINRVFKGMKLP
GRMGGKTVTMQHLQVVKVDLDNNVLLIKGNVPGANKSYVTIKNSVKANTKKSLSKQHNK
>SEQF1778_EEI66535.1 ribosomal protein S10 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKQKIRIRLKAYEHRILDQSADKIVETAKRTGAQISGPIPLPTERTIYTVIRSPHISKKSREQFEMRTHKRLIDIVDPT
PKTVDSLMKLDLPSGVDIEIKL
>SEQF1778_EEI66536.1 integrase core domain protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
AYKTIYNWIDQGVLDIGVADLPDHGIRRRRAKETRGTFSHGRSIEDRPAEVIDRHTSGHFEADTVLSGKRKGQAIATFVE
RKSRLIIVKRLQGRDSTSMTKAILELANQLEDNLKILTVDHGKEFANYKLIEEQARIPLYFAHAYSPHERGSNENRNRVL
RRFIPKGQPIE
>SEQF1778_EEI66537.1 hypothetical protein HMPREF0534_0125, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFSAVFWVLAFWFIVNLVWTIARLNNRMMSRTFAWINVVAVVIGFWTFYAASNGGGGIAPWFRLMNWTNIVLAIFQFYNG
YRPHQYS
>SEQF1778_EEI66538.1 hypothetical protein HMPREF0534_0126 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQLHDKEAFNMSEQEKSAAQQRIDNAVYGTPKIKPDEQRKYLGTFRERVCLTISVQELQEQDWTKALTAELDRGIGNLV
FINGNLPHDEIHPYIQTAAKDNAQFTLKTDPEYKTDPGSLAVVVAAKTAVYQSPVDVKKRYPNLVNSNSSMTEKNNDQHQ
SFFHHLFHRKDRG
>SEQF1778_EEI66539.1 recombination factor protein RarA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQQPLAYRMRPRTLDEVVGQQHLVGPGKIISRMVKAKMLSSMILYGPPGTGKTSIASAIAGSTKYAFRKLNAATDTKKDL
QIVAEEAKMSGTVILLLDEIHRLDKVKQDFLLPHLENGRIILIGATTENPYISINPAIRSRTQIFPVYSLSTDEMKTAIQ
RALVDKERGLGNLPLVLEENAEDQLVAATNGDLRSALNGLELAAKSTDPSEDGKIHLTLPIIEESVQKKALSADKDGDAH
YDVISAFQKSIRGSDTDAALHYLARLIEAGDLPIIARRLMITAYEDIGLANMPAVQRAVTAVQTAERVGFPEARIPLADA
VIELCLSPKSNSGINAIDEALAQVRQGGFGDVPAHLKDAHYKGAAKLGHGLDYDYPHDYPQDWVAQQYLPDRIKDAQYYQ
PKNNGRFEASLGRQYWQLRKAQQHTLRGKYHPSK
>SEQF1778_EEI66540.1 hypothetical protein HMPREF0534_0128 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLLPLLMTLFGLIALFEGVFLLTHIHKPFLIFDPTKSKYLAPQLKNWGIVMTVVGILSIISGWTNNTGFLVIMVIIGCVS
ETLMSFAITADFRINHRK
>SEQF1778_EEI66541.1 universal stress family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAQEYKHILVPVDGSKEAELAFKKAVAVAKRNGADTELRLLHVVDTRAFQNISSFDTSMVEQVTETAKKTLDKYIDYAKE
HGVENASYSIEYGAPKTIIARDMPKEMGADLIMIGATGLNAVERILIGSVTEFVTRTAICDVLVVRTDLDNKPIENPKKR
RF
>SEQF1778_EEI66542.1 transcriptional regulator, GntR family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKYETVKQTLRNEIIDGKYKINEKLPTESALMKRFNVSRYTIRRAVGDLENEHYIYRIQGGGMFVQDWQRDWTKSEKNKI
IGVISTHMADYIFPPIISGIDSVVTEQGYSMIVGNTLNDHKRERQTILNMLDLQIAGLIIEPTESAMPNPNLDLYRQVQK
YKIPTILFHSTYPGFDFPSLLTKDREAEENLVKYLFSLGHTNILGVFQIDDQQGVDRMTGMIKAYQDNNIPTTKSNVIMY
QSSEDYEDIIKKVDMMLNSNNDITAIACYNDRLATRVISHLQKHGKQVPTDISVIGFDNYEMAQIISPSLTTANHPKRQL
GEDAGKMILKMIAGEEVTSKVYTPTIIKGQSTTSLITKENINE
>SEQF1778_EEI66543.1 oxidoreductase, aldo/keto reductase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNKIKQLLLADGQSMPQEGFGLYKITDQSTITSAIKYAYDAGYRLFDTAQLYKNEAEVGNALQELGLPREDLFITTKVS
EPNQGFKQTIASVKDSLQKLRLDYVNLLLIHWPIERAFFDTWAALEELKKEGLTHSIGVSNYQMIHLQYLATQAHEMPVI
NQIERHPRLNQQPLLQYDKEHDIVTQAWSPLGRGTILDNLTLNKIAANHHKSAAQVVLRWHLQSGVAFIPKSVHEARIKQ
NINIYDFTLSDEEMTAINNLNNFTRVGKEPALVYEYNLKY
>SEQF1778_EEI66544.1 bacterial transferase hexapeptide repeat protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQIYTVNHLLNPRLRRNGAYGQSKDVTIGDNAWIGGGAIICPGVTLGNNVIVGAGSVVTKSFGDNVVIAGNPARIIKENP
YVE
>SEQF1778_EEI66545.1 hypothetical protein HMPREF0534_0133 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLAEEAFNVYDPELVKERQYARQLVERFNALGEMNPTASNTVIRQLFGHVGEKCEVHPQFKCDYGYNIYVDDDFFANYDC
VMLDASPIRIGKHCLLGP
>SEQF1778_EEI66546.1 L-arabinose isomerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDIKNYEFWFVTGSQFLYGEEQLKSVAADAEDIVNKLNESGKLPYKVVFKGVMTTAEGITKFMKEANYNDNVAGVMTWMH
TFSPAKNWIRGTKLLQKPLLHLATQYLNKIPYDTIDFDYMNLNQSAHGDREYAYINARLQKHNKIVYGFWGDEEVQEEIA
DWQNVAVAYNESFNIKIVRFGDTMRNVAVTEGDKVEAQMFLGWTVDYWPVSDLVEYVNGISKEEIDAAYKDLASRYEMVQ
GDNTKEHYEHSVRYQLREYLGLKKFMDEKGYTGFTTNFEDLHGLEELPGLAAQLLMRDGYGFGAEGDWKSAGMDRLLKIA
ADNVATAFMEDYTLDLRPGHQAILGSHMLEVDPTIASDKPRVEVHPLDIGGKDDPARLVFTGREGKAVDVTLSYFNDGYR
VIGYSVDCHKPEAETPHLPVAKQLWTPTVGLKEGAERWMHAGGGHHTILSFSLKPQQIKDLFGMLDVKVDFIE
>SEQF1778_EEI66547.1 L-ribulose-5-phosphate 4-epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLEDLKKEVYKANMRLPKLGLVSFTWGNVSGIDREKGLFVIKPSGVPYEEMKPEDMVVVNLDGEVVEGDLNPSSDTPTHT
YLYNHFPKIGGVVHTHSPWAVAFAAARMDVPAMNTTHADTFYTDVPAADALTKEEIEEDYEGNTGKVIVRSFKERGLDYE
ATPAALVMQHGPFTWGPTPDKAVYNAKVLEVVAEEDYHAMQLTHQDLHLPQYLLDKHYYRKHGANAYYGQNNAHSKDHAA
HA
>SEQF1778_EEI66548.1 carbohydrate kinase, FGGY family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNLRETATQVKNGQASLGIELGSTRIKAVLINPDFETISSGSYTWENQLKDGIWTYPLDQVWEGIQAAYAKIKADVQSKY
HVSLDEISSIGVSAMMHGYLPFDKNNQLLVPFRTWRNNITEESADKLTDLFDFNIPQRWSIAHLYQAILNKEPHVKDIDF
ITTLAGYVHWKLSGEKVLGIGDASGVFPIDDQTLTYRQDFIDKFNSLPEVEQYPWQLKNILPAVLVAGCDAGHLTADGAK
LLDPSGTLQAGSLMAPPEGDAGTGMVGTNSVRKRTGNISVGTSAFSMNVLDAPLKKLHRDIDIVTTPTGDPVAMVHINNC
SSDINAWVGLFRDFANTIGAKIDTNTLYETLFDSTVHSDPDAGGLINYSYLSGENITKIQEGRPLFVRTPNSKMNLANFF
LTQLYAAFAPLKIGMDILLNEEHVQTDVMVAQGGLFGTPVIGQQVLANALNIPITIMNTASEGGPWGMAVLAKYAETYGK
ESLADYLDEKVFKNPESMTLTPEPAGVKGYESFITRYQAGLPVEALAGDDIKEREEKGSK
>SEQF1778_EEI66549.1 MFS transporter, SP family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNVMAKAEKKISSAFIYFFGSFGGILFGYDIGVMTGALPFLQADWHLENAASLVGWITSAVMFGAIFGGALAGQLSDKFG
RRKMILMSAIVFMVFSVLSGVSPDMGEASAYYLIIVRMLLGLAVGAASALVPAYMSEMAPAKARGRLSGLNQTMIVSGML
LSYVVDFLLKDLPGEWAWRLMLGLAAVPALILFLGVLRLPESPRFLLRKGDEAQARKVLSYIRKNPAEIDQELASIKETA
KEERQANQKTSWSTLFSGKYRYLVIAGVGVAAFQQFQGANAIFYYIPLIVQKATGQAASSNLMWPIVQGVILVVGSLVYM
WIADKFNRRTLLMVGGAVMGLSFILPAVINWMIPNMNPMTIVVFLCIYVAFYSFTWAPLTWVLVGEIFPLAIRGRASGLA
SSFNWIGSWLVGLIFPIMTASMPQEAVFAIFGIICILGVIFVKTCVPETRGHTLEEIEEQGTNHGRVKASNPEN
>SEQF1778_EEI66550.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRLRGDVLKQIRRKRGLSQTALAEGICTQATISLMEKQNRLPKMDILTAICERLNISSDRIVENEVSGINETFNQIVDNL
ISRNFEDASALLKKVHVKNLESDFDKQRYYYLVGMVQVESNQIDEAIFNFELVLTQFATTSANIYLAMTTAGMALAYLKR
GDKERAARLTNRSVKLIDNKKLIGSLYQWASIDCQIAELYLQLEDPDNAIEVANKGIELCREHDSLFLLDELYLCIGRSY
ILKNDKEEAKKALKIAESLSIARNGSVAEDTILLELKNLEI
>SEQF1778_EEI66551.1 hypothetical protein HMPREF0534_0139 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYFWSIIKDLGKAKVIFVADGGIIPLAMVQFIEYIFYIQQL
>SEQF1778_EEI66552.1 D-ala D-ala ligase N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKKLHIALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPEDQVVAEAYQKMDMSS
PLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSNIAASAMSFDKDLTKKIISQAGIRNTPYVVVTPEN
RADYSWSRIEEKLGNLTFVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKL
GAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVDSNNVPYLGEPNTLPGF
TNISLYPQMWEVSGISYSDLIDRLIQLGLQEFERNSKIKYDFRKLGTERVGQKKYNED
>SEQF1778_EEI66553.1 hypothetical protein HMPREF0534_0119, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKAFGGDNYFVSNYDEMKNVFARAVDSERPNIINVQIAPSMGKESGLIGNLNPKLNL
>SEQF1778_EEI66554.1 thiamine pyrophosphate enzyme, central domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNGLTALAQATKNCFPLIMISGSSERHIIDLSQGDYEGLDQYNAAKPFCKKAYRVDRAEDMGLAVARAIRTAVSGRPGGV
YLDIPADTIVQEDTADQSNFGVYKLVDPAPKQVPNDEAISRAVDLIKNAKKPFIILGKGAAYDQTEKQVQQLVAETNIPF
LPMSMAKRLIPDDSPHSAAAARSLSLRNADVVIVIGARLNWMLSYGDAPQFNPHAKFVQLDIDATQFDFSQPISVPLQGD
LKSILGKLVPALLATGYQAPAAWLEQIAQDTEKNDKKFAQRIANGKVAQKFGYYGAIAPIAEYFQQHPDTYLVSEGANTL
DIGRDMIGMQLPRHRLDTGTWGVMGVGLGYAIAAVVETGKHVVALDGDSAFGFDGMEIETIC
>SEQF1778_EEI66555.1 putative oxalyl-CoA decarboxylase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIEGSQIMVGDSLNKTGANLLIKALQENNINRMYGIVGIPVTDLARLAELRGMKYYGFRREDSAVNVAAATGYLT
>SEQF1778_EEI66556.1 hypothetical protein HMPREF0534_0122 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRYVKIIISPARTMQVDTDSLLYKDLPEFLQQTKDILGWMRSLSYDELHKVWGNCSSRLAMKNYQWLQQMDLQRKLTPAI
IAFTGLQYQYMAPSVFSDDGLKYVQDNLRILSGFYGILRPFDGIIPYRLGMGDMAPVNGYNNLYDFWGEQLYHELYKNND
LVISLASVEYEKAITPYLQTQDRFIKCIFGEEIDGKIKQKATLAKMARGNMVRYLAENQIQTIEGVKQFYIGGYHFREDL
STDEKLVFELVK
>SEQF1778_EEI66557.1 hypothetical protein HMPREF0534_0123 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEQEKVPVQGQVAERTISLTASWAYFALSIVINSMGNVLTLVTSSHVHPQFLGSAYWTAAENNLGIAVLGNNSMTLFWAF
MVLGMLTSILNAILMHKWDWRRIGGNFIFMLPFSIFIQWFSDIFNRIMPDATTLPMIILYVFINFLGVAFIGTAISIYQR
VNLVLHPADDLFQIIRFRYCHGNATIAMWLSYIPPTIMAIIAAFMQGSIYNFGLGTLFALAFQGAITGWSDRHIFPKLKH
QALDIGN
>SEQF1778_EEI66558.1 glyoxalase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAFNKSLAGYFDDVQHIGIPTDDMAKTIAFWEKLGFKKLGEFDTDDQGNEVVFMQYGHLTLEIWTGDGAVHETGAINHIS
LNTSDADAAFKAAKAEGFNLKDDEVQHLDFWDKGIKFFNIEGPNSETIEFCEIVK
>SEQF1778_EEI66559.1 hypothetical protein HMPREF0534_0116, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
AVVKGYVSFNGACPFLYIVTEQMKFIVPVFKNKTSDFKKQVFTARLTIKINGNEVELEFGYRQRGFYYAL
>SEQF1778_EEI66560.1 PAP2 family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHKKAQIGFGLFCWILFGVLLFNVLTKSPFVRLIDAGGFDLTAPVSKFKTTILTELTFMGDPVTVGIITIGLMLLLWRRG
RATDSVWYGMLQFIGYCLVILIKYSVTRLRPSFRLIDVSGYSFPSGHTFSTAIFTFTILALLLPYCKVKWQRVILGIVGA
LWIIIIMYSRVYLRAHFTSDVIGAFLLASGWWLLANSQRAIFFHWLQKPVNKV
>SEQF1778_EEI66561.1 glycosyl hydrolase, family 31 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNNQLCGYAIVDQKITINYQNSAIVLSVITPEIIRVFQDHGEKGASYAIEGNKTIKTNFTVLDHGDHLELTTAALIVKIY
DNEKMNVYDKEGHPLVIDYQGKRTPIDRGLDKAHAKLVAAEGHDIAGGSDQDKTYFEVIKSLATDEQIYGLGDKTGYLNK
RGYEYDNWNTDNPAPQVESFTRLYKSIPFMLGLKNGHPYGLFFDNPYRSHLDLGKENANYYFYSAVAGNLDYYIIGGPHL
SDIVTNYTYLTGRVPLPQKWVLGYQQSRWGYSVSPEKVQEIATKLRENDLPCDVIHFDIDYMDGYRVFTWNKEKFTDPQA
FVSKLRDQGFRVMPIIDPGVKQDKKYKIYKEGIKKGYFVKNPDGTVYVNKVWPGDAVFPDFGREEVQQWWADNCKYLVDT
GTAGIWDDMNEPASFEGEIPDNIVFSDGKSPSTHKKLHNVYGHNMAKATYNGLKKYSHKRPYVITRAAYAGTQKYSTVWT
GDNQSLWPHLQMMIPQLCNLGMSGFAFAGTDIGGFGADATAEMLTRWIEAALFSPLYRNHASMGTREQEPWVFGEPTLSI
YRKYLKLRYRFIPFLYDLCYKETKNGLGIMRPLVLNYDQDPTVRTMNDEYMVGDELLVAPVVQEGQNTRAVYLPAGEWID
FWNGVEYAGKRSILVEAPIDKLPLFVKKNTIIPWGPEVSHISDEPNETMTFRLYGQHASYTHYQDNGLDFAYQSGEYNFY
QIKASQNRVTIDMAHNGYDKNYRKIFVELNDQKLTFEFNPQTQTYVQQ
>SEQF1778_EEI66562.1 hypothetical protein HMPREF0534_0113, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
GINDNKNDSKFYKELFQDYLVSGKDAYFGICNSIEELFDYLNDMKNYDPASQNRVVAGYCRKWVSKKSEQSDWVENSNHW
NWNSRLEDWINAPDSENEIGSIHAVQGIDLNYVGVIIGKDLTINEKGELVADSENYYDNYGKFKKNDPHPLQFDRFVKNI
YYVLLTRGIDGIRVYFEDKKVEKAFKKFMGING
>SEQF1778_EEI66563.1 hypothetical protein HMPREF0534_0114 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLDILDYTKQELISDADFWQFAGEHLEKPTEFKGVSFVSSIKFIEEQLLPRYDKVTLILGLSDNGKESIGKRMRQLNDRT
EFVNYGYEHPDSEFTKRILDGSLRLLFTKQELIHTKMYLMTSDDRYLSFAGSMNLTEAAIHHNLEQLDSDYGMQTDPLYQ
CHVQMFNDNLRHATTYLDAKKMAGFIKAKNKEQLQINVYTDTVNMVKNKDTGDQDAVVIPAEEVKEYKDQYSSDEELKKL
SASEKLSVAQTVKLFGNAGYKKRNLENIGKELYSLTQVVKHVSRNDDNSGKITREEDLYPKPVLFYNNGQLFEAPRVGDN
VKSELITSNLTGDRLREQLQLFSDIAHEYDNYKEVGEGWQACDFMCFLFEAPWLWKIRNMYELSPSSKSREDVPLGVALI
GQGRTGKSTLGKRLAAKLTGSGNFLDGGVFDAKNYALGKSNINMTITTVLSDYMYSDGPVNPMMIDDISPDLTTRPYFDR
FIKEITNNRSLTQPLPSFIFTMNRREGDSKSQFSLKPEIMRRLWYLSFESTFAGDEDEREAKLNDLLERANDQLYRYCQV
ELAKFFNDVSPETEQKIERDYLYPIKYVLKQAMDQFGMFELVKDYFDDNYDYSLFVGRNDWTMLINQAEVGADLTFIQQD
GQLKAQINKQLFNKVSDSTARNNGSMMMERYFQYLPRKYRISYQYTSTGFIVDVANFDRWLNSDTLQQKYNSSEVARDAQ
KVNTDAKMTELLTRLTEAQEKQAHRHGIFSWLKKK
>SEQF1778_EEI66564.1 hypothetical protein HMPREF0534_0115 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKNKTENKTTQPKKHSKKKFTILALLAGAIALPIYLVKKA
>SEQF1778_EEI66565.1 type III restriction enzyme, res subunit, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKKYVFKEFKINRVSERPEPLKNDEIGLKDQKRLEKGDTIYIYFGKSHSYVGQTKQFLKRYKQHYMAQSKFDLRNYKCV
VMSFGQLINQLSLDDIENQLITYIAADGKHNEVLSDNSTLGNSIIPYPQQDQVKSDFITPFWHELYTHNYVHTPDIETVR
QSVLFKYSPFHELSEIQAQIIQEIVNDTRNNFVINGMAGTGKTVMLTNLAAVLSKKNPNKKVAVIVKANWKKTAKRIFKT
YGKSNIAVYTAVKFIQAEEDYDFVIIDESHRLRRYYSKSQNTLNTIFRLPPKVAEERGVNYDVGANELEKIVKRSKQIVL
MYDPSQQIRPGDITMEQFNNITHKFKHFYLPTEYRINIPEKSGKYRRAYTGENYIKGI
>SEQF1778_EEI66566.1 gluconate transporter, permease protein, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPLLIVLIGVIILIFMIVKLKMNTFVGLVITSFVVGLLLGLPLTKIPQ
>SEQF1778_EEI66567.1 putative gluconokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNYFIGVDVGTTSTKAVLYDQNATVLDQFSQGYSLYRDASGMAEQNPTAIVEAVEKVIHDAAQKADLTNGKLLAVSFSSA
NQSVIMLDKNFNPLSRVITWADTRAHDVANELKNSPAGQQIYAKTGTPIHPMSPLTKIMWLNKTQADKVAQTAYFGDIKS
YLFYQFFNTFKVDVSIASCTGMMNVNTCDWDDQALELANVDRSQLPEIVNGITQAIGLTAAAQAKMGIPADTPFVYGAFD
GALSNLGVGAIKQNTVAITIGTSAGVRVVTDHPVIDPQQRLFCYAVDKGLWVIGGPLNNGGDVYQWAVEHLVDASAVKNE
NIDPYTLANRVIEGVPAGAHGLLFHPFLGGERAPLWDANARGSFFGLSHIHTRADMLRSVMEGICMNIATVFQAVRDLVG
NPASVTATGGFARAEVWRQMLADVLNCPVNIPNSFESGCLGAITMAMKSLGMIENYEIIKTLVGDISSYQPNQDAVNVYQ
NYLPLFKQVEGLLTPAYSTIAKLQQQSTTH
>SEQF1778_EEI66568.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIRKATMADLDVVVDILRDGRNQLAERGVDQWQGDYPNVTHVKEDIENGYAYLVKADDGQTVGTLAIVEAPDHFYDKLN
GEWLINTENYVVIHRVAIHSRHAGKGYASKLFLSLIEYLETERPEIKSIRLSTNENNMAMQRIATKSGFKKVGTLHGAFR
PSELSYVYELLTKVRVA
>SEQF1778_EEI66569.1 hypothetical protein HMPREF0534_0107 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYTAILICVITLIETWVVYELYNAREYAKKINEK
>SEQF1778_EEI66570.1 hypothetical protein HMPREF0534_0108 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKDKGLLFMMNILLIILTAIFIIESIFEVRYFCQIRTIFNQSNRIEPTKRVQRIVTIETQWSWIS
>SEQF1778_EEI66571.1 hypothetical protein HMPREF0534_0109 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKGSIIMEINADALKNFQDSKFNFVDADGNDVDFDNLDESVKYTLRDGETVVEDDMHAKDVVDTINNEYGKTMNV
>SEQF1778_EEI66572.1 hypothetical protein HMPREF0534_0110 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQNTSEINKTDKQVYLITLLRKSTNMPQYIDHMIYETAEGGQEFMARLVEAFSRAGYREKKLSDDKYNLDNGLDKITLRG
SYQPIYKG
>SEQF1778_EEI66573.1 hypothetical protein HMPREF0534_0111, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
FIFYLLLNHNKATPDTCKARKNAIIKANLSKENYMIEAYKYYWENSFKYRATSTRADFWWPVLVNFIIFVILYFLLAIAG
FASVTSIMNGYNRGVGFLIFLLFVIAVFAIAIIIPGIAICVRRVRDTGLTGWTVLVFWLLSLIFTSNDSAVMETISSVIN
IIFLVILCLPTGYVSKHGWWSANYGNDITVPSLRNDD
>SEQF1778_EEI66574.1 hypothetical protein HMPREF0534_0065 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIKAIMIMTPKLRKDLNAAFLGCKRINPIKRTRKRQIAKAKHMMAWHDHTSYEWSQWWHSKARKPKRWKNDERRKESIR
>SEQF1778_EEI66575.1 hypothetical protein HMPREF0534_0066 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEEKKALGEYLYESLENDAYLKKLETILTEQFGRKQADQPYWISNKQLHDLLRFADLLSKSFNKAGSLEQKLRAMAIMD
KLKFLYPEHKAVEFFKRSVEAQYNGKPFITELELAKFNRESEHEGEE
>SEQF1778_EEI66576.1 hypothetical protein HMPREF0534_0067 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLTTQARLAMRNNQSVRLVGDLYHIIDIKRVNGTSRMIATIKKIGLAEWKYKPIEVDIECLERA
>SEQF1778_EEI66577.1 hypothetical protein HMPREF0534_0068 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIKDLLKYIPLVCFTAIIITEILCGFDKHMIGYAVFGLFVLLMFGAV
>SEQF1778_EEI66578.1 phage transcriptional regulator, ArpU family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLFPEFNEKKTIKNVRNFFNNDKKYQRICRNAWMDGIKAQVNDVTGIHGSRKGNGSEKMMIYYAECARAKRAVEKAINA
CSVESQDILNWHYVKQLTVVETKLHINHHLGHSTFNDADEVACLEFAEACDRISMQMNCNLEILPLFLNFDGDDEKAGTN
QEQNGNKTGTK
>SEQF1778_EEI66579.1 putative toxin-antitoxin system, antitoxin component, Xre family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYDVFKVVNWLRVRNNADMRQNPNIEELSQMKVMKLLYYIQAASLSISGKRMFDNDIVAWKYGPVVEAVHRKYSGCRGIV
NSNYPITPQDLEDYKELQADEQASSILNSIYDVYGYSSAYDLMRQTHSEKPWQQTPHNRVIKDKYIKDFYSGVFISDEN
>SEQF1778_EEI66580.1 hypothetical protein HMPREF0534_0071 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKINNSYSGPKFSKTVKIKHHIDRFAFNFSFLTKDSKYNLDSRSKTINKKVRLKLLDRITQLSQDDRVVILNRDKREGLE
KMPENKVRLSIHPDFKKSKRYDECDDDFWVFRLGDLGRAIGKINENIFYIMSIDASFDQYNHGS
>SEQF1778_EEI66581.1 hypothetical protein HMPREF0534_0072 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFQTKRFGLVASRQEYQMLCRAERHMNKIHNKKPTNQRLSAFKVHKNK
>SEQF1778_EEI66582.1 hypothetical protein HMPREF0534_0073 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAELSEARRKANKKWNEKNKDKQRVYLYRSHAKKFVREIANEDDLKELRKMINERLSNA
>SEQF1778_EEI66583.1 hypothetical protein HMPREF0534_0074 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MHRKSFKNVKDHSLIIDDGWFNAMYKDKIDDHLGMEAEISFLKQPDSIDILLTNLYYPNMRQGTREQDDQQTVFKLSKEN
AIKLRDYLNKVL
>SEQF1778_EEI66584.1 hypothetical protein HMPREF0534_0075 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVSEAQQRAKKKWDDKNKDKNRIYRYRSYARKFIRDLATDDDLKELDKLIHKRLND
>SEQF1778_EEI66585.1 hypothetical protein HMPREF0534_0076 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVKIFVAVKALDSQEARASLGSAYFLTSIKISNKINKVKFNEFMGITSSQFTWEVIPIFCCLADPKEFYGDAYVFKAK
>SEQF1778_EEI66586.1 HNH endonuclease domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSILKPTKLTFINGKPTLVSYDKIVRKDNDKAYNFHRNVEENDYVKFYHSTEWKHKRQEILERDYGLCQRCGMDAELVDH
IIPSKDDWIDRLNNDNLQSLCRGCHKIKTKREWMKHHKGLERYMNINIVCGLPASGKTTYVKQHMTEHDLIYDYDELMQA
LTGLPLHQTNYDVHDYVSLFFDQMLRKLKAEQTFNNVWIIKTLPDKRIDTLLSNYHRINHIVIMTDPNVCEERLRERKER
ISFQKILNGFKTADFTGYRVVKNG
>SEQF1778_EEI66587.1 phage terminase, small subunit, P27 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVEQEAKYKAEFMAADGLPELQKTPPAHLDKVAKAEYRRIIGSIGKLPLRNLDRSELELYCTWYSIYKDASVQLNKEQSK
KRKNIAKINNAIKTIDKATRAIKGLASDLGLNVNSRLQMNMPQTDKEEHQSLRDKFRIS
>SEQF1778_EEI66588.1 putative phage terminase, large subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMNYAKDYAEKVVAGKIIAGKKVILAAKRYLNDLKKADNDDFEYFYDNERANKVIQFMEILPDPKTMRAYPLADFQRFII
ANMYGWWKKDKPSERRFRKGMLSMARKNGKSILISGIALYEFLMGNSPEFSRQIFCTANDKKQANIVFNMIKKRLNALRS
SDGDTKRGTKVNRDLISNLDDYSYVRSLSKETGTVDGFEPHVGIMDEYAASKTTEMMELLESGQALLHNSLIMIISTAGF
DLNVPMHTIEYPYATKVLKGEITDDTYFAYIAEQDNVSEVDDKSTWIKSNPILSVPALQDQVYGYLAKRWKEAKQKGTKN
SVLVKNFNMWRQAEEDSYMDIDTWNAAQIDPIDIDNQRVWFGIDVGKSSDLYAISWLIPQEGYWYADSYAFVGTKYGLEA
KIKADRLDYVRLQGMGQCEITKLESGVIDVERVYEWLDGFVREHNLDVQAICYDPAQYGTLLTQIEKGHPEWQQISVRQG
TLTLSMPTKQFRDDVLDKRVRHSGNEILTGAMANAILKSDNNGVRIDKNRYSNKIDAADALLDAYAICFRENIDDYLTDE
DVFNDDFGF
>SEQF1778_EEI66589.1 hypothetical protein HMPREF0534_0080 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMTSDSKKVVQSESRYDKYILCADWHEMNKRWSTDISLFTSFYGAVTVNQSDHLICTDIEVRHYICPDIVDGIKKVNELE
VDASSIQLLSVEELMSLINTFKMRICITRHPKLFSNKCGD
>SEQF1778_EEI66590.1 hypothetical protein HMPREF0534_0081 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKFWKLNEPIILFLLACICLAVTGFLFSTKIGLLIISIELFVMAFISYERG
>SEQF1778_EEI66591.1 phage portal protein, HK97 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLFHTEKRDWAQDYIDQGILPGVSNMPSYSGIGALRNSDVLTAVSHVASNVARFPIVILDDDKNAVKNIKSVDYLLNKHP
NDMLSAYHWRFLMTVNAILTGDGFSRIIRDPHTKAPLEIQYFPPSQTYIDDSDVTNIKYEFTPINQKGGGQTIVVPAEDV
IHFMFFTYDGIHGRSPLLSLADEIGLQDDGIKTLRRFFKSGLKGGLLKAKGKLSPEARLKTRKAFEYAQANSNAGSPIVT
DDTFDYSPIEIDTNVLQLINSNNYSTAQIAKALHIPAYKLAVNSPNQSIKQLNEDFITSDLPYYFKPIASNLEMTMLTDR
QRHNCHIEFDTRKETGMSMDDVQKGVTNNVITPNEGRVRMGLVKSDNPDLDRFQSTLNTVFLDKKEEYQKQSTAKGGGID
DKRLGNSTVNDANSDENGN
>SEQF1778_EEI66592.1 phage prohead protease, HK97 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMPIQMRTATDEDDEPVIEGYAAKYNKPSEVLGGFTRFIEQIAPGAFDDADMSNVVATINHDPNQVLGRSGVNMTLSSDS
IGLKFTVKPTDTSFARDLIANIKAGVINQCSFAFTVANTDEAQDWEESDQDGVDYERTIRQIDRLFDVSVVTTPAYPDTE
VQVGQRSINMVKQMQSQENRDATDQKRKKMLRELERQELLKTLEGGN
>SEQF1778_EEI66593.1 phage major capsid protein, HK97 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFREKIKELLAQKEGKRALINEKTNEMRQLLSNEDATDEDLTRAKSLRSEIDAAEKEVRSIEDDLKLYRKAAKGNPAPDP
HKRSQNNEDENEEKRNFNAYLHQEHRDGTTGITSSDVVATIPESILYNPENEVKSVTDLSQLVTQFQATTASGKYPVLKR
ATERMNSVEELQKNPELAKPEFEEVDWKVSTYRGAIPLSQESIDDSAIDLTSLVATNANEQKINTTNFAIAAVLKAFTAK
SVAGESVDDIKHILNVDLDPAYNKMIIASQSFYQYLDTLKDKNGQYLLHEAITDGSPRTLLGVPVTVVEDELLGAAGEAH
AFIGDLARAVLYANRKDIQVRWVDNDIYGQYLQAVTRFDVKAADKNAGYFVTPSAASK
>SEQF1778_EEI66594.1 phage DNA packaging protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METDHTFSSDKQFFANLKNYCKIDQDFDDEILKIIVDAAALMIARAIKWESKPADYSDEPRFKIALMKQVKENFYERGIT
ADSYRPVLSSGIDGLINQISSEVNTDETTEHDGTDNILLSPNGDQSGNSSTDQGSES
>SEQF1778_EEI66595.1 hypothetical protein HMPREF0534_0086 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MWAEVPKLSVREFVQNSSNVGFRKESPTFLIAFKTRKEIQSNWLINWRGKWYEITGMDPDYAKQDLTKITAQEVVQNGSD
R
>SEQF1778_EEI66596.1 phage protein, HK97 gp10 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAVTGETELIANLTKLEKTEEKKARKATRDGAKVFQEKLKEVTPVAKSGDHSNMTPLAEHTKHGNLKTNDGDYSMDVGYD
KEKGWIAHFPNAGTSKQHPQHFIEKARAQSKKEILAKYIEDLKV
>SEQF1778_EEI66597.1 hypothetical protein HMPREF0534_0088 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKTPEMQVADYLTNDERLVAMMDELRQDKLSYVPIFTSTPDDPFIKASSAPWIRITPIPGDDAIYSDDARFFEYPRVQVD
FWIREENDDRLMNIQERIYETLHSHGFERYYKNSYPDPDLDNCIMVTANFEGFEERNDI
>SEQF1778_EEI66598.1 phage major tail protein, phi13 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGTPNAKVAKFGASNFEYGVLDENEKIKDTRKMSGLSEVKLELTNELKTLAADDGPYLVLSGGITEAKETINLYDIDSIM
KKDLYGIDIQNGTEVYTKNLVPNYVATMFRTKLSNGKHCWVGLTKGMFSLPGISIKTQDGAPDPEADEIEGNFVPRGDAD
TGTILLIGREDNEEFDFAKFHAMVFGEEAPVTDPTNTKDTKPETVVDKG
>SEQF1778_EEI66599.1 hypothetical protein HMPREF0534_0090 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPLKLKVQLEGKDSDYERKRPPMLENLLDALKIQRLETEMFGGDKGPTDEQNAKRMDLYAEFASRFWGQGLTKDDILKGV
SAVDGFNQMVTAVNLTLGYNAEEDNKTKKSAKK
>SEQF1778_EEI66600.1 hypothetical protein HMPREF0534_0091 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIDDSIKSLSDFIKNQISQGYTWNEISKLTLADLKLMDYVFEEKQTTIDKAFPFLF
>SEQF1778_EEI66601.1 phage tail tape measure protein, TP901 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTQSLGHLAATVSLDINPFKAANGVLKAQIKSTANALRAQEAALKASGGSINNMRAAYATMSQQMRNYNAQLQNAKKAMD
DTTRSKQSRAKAATQYNKTSAQIEQLRGRMQALNRDIELQSNKWTQLANRTQHFGNVATNVGSKISGVGRGMSTYLTAPI
AAGLTYSAKKLIDFQDQMTKVKNVIRTSGESAAETNAAYKTMTADARKYSDEYGVSQQKIAAGYQDLVKRGYTSKAAIGV
MRNELKASVATGDDFNDVIKVASQAMESFGLATDKAGRPIKNAAVMQRRSTKTLNELAYAADATSTDFQSLGVGMSYVGS
TAHQAGFSLSETASAMGILSNNGLEADKAGTGLRKVINSLITPTANGQKALASINLSTKDFLTKSGKLKSMSSIFKTLND
HMKGLSGHQKNDIFHALFGTTGQQAGAILTENANRLRELNKEVQNSAKRDYIGDLSQKNLQSPKAQLAIFKESLTNAGMD
MAKYVLPAVIPLVQNISKLAHGFGNLSPAVQKAIVATTLFTAGAGPLFLILGKLTSGAGKTVLAFGKLAAGLGRAQTAMK
LGASGLDVIGSAFSKSTFRAAKFGTTMTGAGGRAVQAANGVGAATVALQGTGVAAGEAGAATAAAGVSLGTVAAVAGVAT
LAIAGGITVWELWGKKAAESSQRTDRWGSDVGAAADKALGKFKNTSTGIQAALTDMDTATKTSTKSMADSFDREFSQMES
DARKHLEGVKKAEKDMSPEVAAAVDREAQHEKDTMNKILSNADQARTRANTILQTSNKNIASLSDTQRVMLQNNQQQIVD
DELKMWSLTGNQRKKAMAALNNDVANMSHRQRNTALADLRTQSDNMRNEYAKQENSLKRQLKAGTINQNEYAAGMRANKK
TLQDYVDKASAEYIRLARANGQSTSRIKEDMQAEGLSYSAGMKQLDKLAKNAEKNSKSIAVSLDGLKGKTKDAAKMWNDL
VFDPKTGKVRTNAQEEVNKAVNSKDQWNQIKLLKKEGKLSTNAQQMVAAALIENGKWDSMSWKEQKAWLKDGFSETIVQA
LEKSGEWNNLDLKTKEAIVKAKGKQEMADILLESGAWNSLSLKQQEAVITNKATKPIYEALQSSGQWNNLTLKQQEAIID
AKGTPQLVDALVQANQWNNLTFKQQQALVTTKGTADVMDALNKIGRWNQLSPKQQEAIVNAKGSGQLGELISKYNLWKGM
PASVVKQIVAEDRASGNLKAANDAILAWQRANPGAPKNALAVDNASGPMRNAAGGVNVFANSNPGSPKNAQGYDNASGSM
YGARNSVNAFAGSNPGPAKIAKANDRASAPVKTALDAVHNFMSIPNLIEKTVSVVFHKSKHAKGTNYHEGGLMEVNDQPG
PVFRELVQFPGETPFIPYGRNVVFPAPRGTKVVKASETAKMFKHLPQYANGTDDAVSVLNNFKPNLQSSQVVTNNYNGGQ
TDNGVPKELLNRMDQLIGRFGTLLGLNAAQLSAIKAGAFNKDQLYGTMGKDQIFFDNQSL
>SEQF1778_EEI66602.1 hypothetical protein HMPREF0534_0093 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MVGIAVNVLYIKLDDQKEVASTDITDHLTFLGLSEGPSLSNNYRDDTLEDGQVWNYSRYVQTTVTAKFLLQFIDRRDFKM
AKHEIYRVLAQKGIYRLRTGVEPDIVRYCRAGSFEIKSDPEEVNYCTFEVPFENPSGMRFSKLHSDEMKDEDFLDLNMNM
DENTPSYHFKGQNKFTVYNDSDITIDPVQQHHDFKITMKHNGGKFTIKNETTNTSWTYNKNVAGTDTLVLQGRKLEKNNN
FDSANTDYGYITLAPGPNQFTVTGADDLDITFSFPFIYLG
>SEQF1778_EEI66603.1 peptidase, M23 family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MWPTFKPSWEKNSTYQVTFSVFNYGDPLYDELDVESSFFLDGQEYIVKNCVENFDTNTKDITAWHVYNEINRIYKRSDLT
LNKPTDDNQNQDVSYSVEDILKAWIDGNNLGFSYEVHGNFDKQSTSKFDSGSGKDMLSKILELWPNAIVFPNNKNIRVYS
EDEFYKDNGRIIDFPHDAKSVKTTRDSQSIINEIRCVGGKHEVQHTVYTGTGGANASGPTEPVNGDWTPVIQYAASFYGI
KPTDQQLNVLRAQIHLESGGREDAQQPGADPDGDGSGPALGLLQFKQRTFNYYCREPYTNVKHGFDALIAFFNIPNALGQ
INGVTGWSPHGAPITKDKLIITPPNPWGWPFPNVGEGHFSLGQTFGTHPQDGVGRTNGFHDGLDFGSVDHPGSEVHAVHG
GKVQDIGYIAGLENYVTVVSNDYLICYQEAFSSRSNIKVSVGQDIKTGDVIGIRDTSHVHIGITKQKNLMVALRSAWSDD
GTWLDPLQIIRDGIGGKDNNDAVGNDTTTESQEEYYFQPFIVKDQKSIDEWGEHPGPDLVDERFQDAEAMRKYALTTLKP
DPDLNLEVTLNGNEFVPEANEIVRVIAGKKYSGSYKTVGFTLAPAKGQDNTISLNNTKTTILDYQNQRTKRLEEALDEQR
QRMEGLAGSLDQQSKSLTQVVNDKKETDKSMEAVDQNIYWMQNGQHNLVTTMTGGTASSEKYNDSPVIEVEQGALRSNEF
NLNGVSSISSRLIAKLNATDNSISATTYVEFLKSDGSSAGKSNIVYIVNNGAWQSAGTVNIKIPAGTTKGRLVFDVSGSG
KAYVSRAQVNLGYRVTDWGSLK
>SEQF1778_EEI66604.1 hypothetical protein HMPREF0534_0095 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKGDDFLKELHTNDLSMNSGKLFREQMVENFKAIEQEDHNDDQALSDEVIDRKKGDGNLQGQIDDLQERCQKLEDDKATR
DELKNVQEAWKKKIEHVALGTDYETVEQAVMQILKEKGMI
>SEQF1778_EEI66605.1 Ser/Thr phosphatase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSQTLTYVIGQDRRPHVDNVQDFKVNFDGSNTNWVQARQYERSMRQVFVNIKNEDGTPLDLTGCNVWFEGLLPKNSAGDF
RIIDDKGYVALDPTAGRFRFDMPGHAFTVAGSYRQAFFRILKDGNSITTLEFDLDVLADKVIDGLVPRTYISPVEELINE
IETKYQDSTDKLTKMTSDFVDQFTQSMNTLKALGVTVQNGLDALEAKIKQDNLFTQAEADAFKQALQEAVQKQLDEFQSQ
FNGPAFKEAQQASLDTNMMYGESLPAYFQNSFNHVTQGIPTGNNIVNIATIADAHWQEEGATIFSGYTAKSLEHYQWCAL
STLYNHADALIALGDNINGDEPTGRLNMTLMHVRAMLQTKYVRTAMFMIRGNHDNGAGHQNTEGKSADEVLDDNAVKNGF
GTKFNYYGEVRDGDSFYFYKDFPEKKVRIIGLDSNDIPLEKKDSNGHYAYDTNTAGFRSQQLNWFANKALMLPDNTWQVV
VFFHIPFPNAFGQWAEDDSFKNYHHAIEILDAFKNGTTVSVNDTSNSDFSITGLQADYRSQGQGTLIAVVNGHLHKDDQD
TSILNGTPIIEVTTSASFVSSVVNDSKQRNTNDEDAWDIISINTKERKIHCYRFGRGSDRDFTY
>SEQF1778_EEI66606.1 hypothetical protein HMPREF0534_0097 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDETKPTIESLAQKVNYLQGRINTLWMNPNAFPVMNADPSAGNPFGWQRGFVNSHTVRAAERIPAFLNDGIDVFTLKPGF
YQIRNLRAVKNVPAEAAGQGLLEVAATYPEENDQLGHLTLWDLPTHKTFHAWKSVYTNKQYVWDRIDKKQNFGGAMASSG
SYYSLIRTLNTTLLYCYFDLNINVPKHGYINIDTGFPGTLRPSVPVYFAGSGEGDNVWGSVAIVLKQNGAIQIINTSDYD
VSRVYGTGTYSYDEDQNTSLK
>SEQF1778_EEI66607.1 hypothetical protein HMPREF0534_0098 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNNGNSIQASEIPDNNPPLNQPSNNKTMYYCYDKNGNYTGFIYSDSQPTDSTTKAPVKPYRDESGKSIEGITVGMANPR
WNGTDWVERTVVSREQQLAQLALQQAQFQASQQKLNSQLALQLAQLTAKEAK
>SEQF1778_EEI66608.1 XkdX family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MFSLVQQSYQAGWYTLDNVKTFVLAKMISQDEYKQITGQDYDQQQLA
>SEQF1778_EEI66609.1 hypothetical protein HMPREF0534_0100 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNNLRHNWLWLLTAVETYGLGVYFILTNSTGNFTPPPNSVLDMLDDPPFIFLLGVVGTITLVYSLWNIQHFHYKTIMTA
SLTFVWLLFLCGFVIHDQLRGNLLSIPSMYSFFVLFRIVLTVILKG
>SEQF1778_EEI66610.1 putative phage holin, LL-H family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKALNDIINWIINSGFLALLIYIAVAFGKPWVDSKIKHAKTAQEKEAWTLLQQVSMTVVNSLVGKDMTGQAKFVEAVTQV
QAYLANKGLNVDMKQVQSAVQSAYELSALTPTVDPNKSNDDKQQAKKADPVLEAIKTAPNRANKLTLDKNDVTGEVKG
>SEQF1778_EEI66611.1 glycosyl hydrolase family 25 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTMYTVDVYSGSPDSVIRDPHAQGVIVKATQGTGYVNPKCNHQWDLAGQLGKKRALYHYAGGGNPINEAQFFISNIKNYV
GQGLLILDWESYQNASWGNTNWARQFVNEVHHLTGVWPLIYVQESAIWQVANCANDCGLWVAKYASMNWNSWTVPNMNVS
SGAFKFITGWQYTGGDIDRSIFYLDAASWDKLANPAGATTPKIEAPKPNPTPTPVNPAPSTSNWVDALGDHWFEENGTFI
SNCALHLRWGATINSSVIAVVPAGTVIKYDAYSRHGGYVWLRQPREHGQYGYIACRDANTNEAFGTFK
>SEQF1778_EEI66612.1 hypothetical protein HMPREF0534_0103 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKNLKRQFVKVPSRKINKIVNQTVDINPKSMMDELLENPKLVKTLQKLSLV
>SEQF1778_EEI66613.1 resolvase, N-terminal domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQQLIKDADTGLYDAVLVYKLDRLSRSQKDTLYLIEDIFQKNNIHFISLSENFDTSTAFGKAMIGILSVFAQLEREQIKE
RMSMGRVGRAKSGKIMEFNNPAFGYEIDGDNYKVDPLRAEIVKRIYKMYLSGTSINKIKETLNSEGHIGNKKNWSDTRIR
YILSNPTYLGKIRYDGKTYDGKFSPIIDEETFNKTQNELKERQTATYKRFNMKLRPFQSKYMLSGLLRCGYCGATLFVNS
YVYNGKRKLRYNCPSTYKSKQKTRTYKIMDPNCPFKLVYAKDLEPAVINEIKNLALNPQSIQKPVKKTPDIDVEAIQKEL
TKVRKQQQRLIDLYVISDDVNIDNISKKSADLKLQEETLKKQLAPLEEPDNDDKIVAFNEILAQIKDIDSLDYDKQKFIV
KKLIKKIDVWNDNKIKIHWNI
>SEQF1778_EEI66614.1 hypothetical protein HMPREF0534_0041 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
METRELLNNYYDWLKKKYVIKRHATSDEIITPFLDNINDNISVYVDHLSDKQILLNDDGYTLNNLEMMGINLTDTRKRLL
ENICKQFNIKIIENSVLAINGTEQDFPVMKYNLTSAILRINDLLFTKKANVENMFYDDVLNYLQDNDFGGLPTTMLGHSG
LTYDFKYAIPQKGENPLKLINMQNNISSSQMMKEAFTFNDIKQNSSFNYKDPQYIVIFNDNEKKVSERSQQIADAYGLDL
IPWNNKKLVESLKVS
>SEQF1778_EEI66615.1 hypothetical protein HMPREF0534_0042 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNKDYNYLHNLPKSTDKNHLFCAPFGKQTSFKGTGTLDPNENFRVVQNRKGHRRNNNLTYILFYKQNNIMIRIDINGQR
HEGIETPHVHIFDETHNNGLEAIPLSKLPNYDTTDDVVQSLCEFLKYNNFNTKGLMISPSTA
>SEQF1778_EEI66616.1 hypothetical protein HMPREF0534_0043 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKIGLICTTLLAGVSLAACSNQQSKSTKTSNDSSLKAENSSLKKQLSKKHRQNKNKRSSSNQSSTVSSAYSSNSQQSST
RVSSAQHTSSTSQSNGGQQPATQPQQQQAAQSSDQRPDDVPANFKEYTSYTTDGHKMTQWNDAGSYCGDPDTQYETNIKM
NQAAERIANGQVP
>SEQF1778_EEI66617.1 putative toxin-antitoxin system, toxin component [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYQQTEEACDYLLEKAKEYHIDVKWKHFSPTTPPGSSYEYRRVVMNLDWHRPEELIFQLAHELAHVIHGDTGDVVFYHA
SFTGKESVEYKANVGAVELLVPFYCQGTEIQCVNSTNFMQSFHVPHYLASIVSEKIREYYKN
>SEQF1778_EEI66618.1 DNA-binding helix-turn-helix protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNTIDRIKELAKKRGWSLQRVAEEAGIGINSIYRWNSKTPSTQSLNKVAKVLGVSADYLLGETEKKKTADLADKDTVFTY
EGREIPPEDLEYMKRLLRGDDK
>SEQF1778_EEI66619.1 hypothetical protein HMPREF0534_0046 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MPVENELEKATADVERNIKMKLLERDMTQAELSRLLNINRQQVNRAIKGDNSPKAIEIRKKIYRVLNM
>SEQF1778_EEI66620.1 phage antirepressor protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQQLFNFNGQQVRTVTINDEPYFVGKDVATILGYSNTRDALSHHVDDEDKGVAKLDTLGGRQNQTIINESGLYSLILGSK
LPTAKEFKHWVTSEVLPSIRKHGAYMTPQTIEKALLSPDTIINLATQLKEEQEQRKHLQEENEQMKPKALFADAVSTSNS
SILIGQLAKILRQNGVNIGQNRLFAWMRKNGYLGTRGSNRNVPTQRSMDLGLFKTKETVINHSDGHTTVNITTKVTGKGQ
QYFINKFLNAPVIEA
>SEQF1778_EEI66621.1 hypothetical protein HMPREF0534_0048 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MEIINVDKDGNIIPDLSKKTIPKDLSDVIVEMIYEARSKEVS
>SEQF1778_EEI66622.1 hypothetical protein HMPREF0534_0049 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLGLAIPWLVIIGCFLIGAIVNVIEGEKLNVLKPKYRKKH
>SEQF1778_EEI66623.1 hypothetical protein HMPREF0534_0050 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSTKKLNKFVNLSKKLVNFKDYSVEEQEEFVSNAIAIYRNNNLGSSAITTQVARFFLFLVDPRKAVIE
>SEQF1778_EEI66624.1 hypothetical protein HMPREF0534_0051 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTKIINSKLLAMLMGAWITYCAGVGDYGGAVFLLFFYSLMLWDLNAKKATGSDTSDGNK
>SEQF1778_EEI66625.1 hypothetical protein HMPREF0534_0052 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNEYLKNRLSRIHDDLYLSLIVIDYALSNDQISIGLAHELSRLLTQMDRGSHLKQDLKEAEAEAYRLADEGGLIHE
>SEQF1778_EEI66626.1 hypothetical protein HMPREF0534_0053 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKENITIERWKTQFKETAQHLANELIAEAKTKNTYGEATAYIRKISQQAYGDITDPEDRAGMAVNDAVCSLAVRRLHEE
ERSLPINKED
>SEQF1778_EEI66627.1 Erf family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAEKKEAPKVETPKEKKENLSLAEKLNRAISDIGPVKKDGNNGYQNYRFQSEAAIKAAVKKVIGLNGFDIIPSYEITNQR
DIQGRKGTVNHIVDVIGTFTITDGRKDQDIVGKMPGSGMDTGEKAVAKACTSAQKYFYKQLFNISDHEEDPDATNSDIGA
TYQQNMQQQTNRRPQQRQQSQQESPQEIKERLDNALKMLADMQHTTPAEVKSALIKEYENEPAYKQNSNLALLGGATAMY
KLLRKEQKAG
>SEQF1778_EEI66628.1 hypothetical protein HMPREF0534_0055 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MYGKLISTQGNVVKIQLDEEMDINKLIKFANGKQPTVELLVDDGRHITPDQRKKIYALLGDYCLYTGYSLNEAKLFFKSM
IADFFHTEMFSLSDCSETVASQMITTMLEFFFFEDIPFHTKIWDSLPDDFPRVMMCIKTKRCAICLKEHADIHHVTAVGM
GRNRNEINHVGMYIEPLCRVHHTIFHTIGAKNFMAKYHIKPIKVTPEIAKELHLGKQKSEELKNAE
>SEQF1778_EEI66629.1 single-strand binding family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNSCQIQGRLTAEPELNTSGSTQVVRFTLASQRSFKNKNGDYDADFIRCTAFGQRANFIAQHFHKGQKMIVEGRWQTGS
YTDQQGNKVYTNDLVVSNTEFDETRSQNNQQQNNAQNNNQPYQGGYSQQDAPIDIGDDELPF
>SEQF1778_EEI66630.1 hypothetical protein HMPREF0534_0057 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MADEFEGSRIFLNVPVFAARDKDLLKKTKSLLLLGEIVSMLNTTGKFFMSNKTIAKRLDCTPQAVNNYLQLLEEKKLIVR
TKVHDKNTNAIVGRIIKAGPALINARLLGLTTDVGEGSKQAFKGVVNERLYKDNNLKEQYKRTNTNSASHGNAQSVSQLE
KEFEEVWSKYPNKKGKKQAFNHYKAWRKASVKHTNEYLLERLKKYLTYCQQNNWYHPMNGSTWFNGRFDDELEVDNPKPA
NKYEQEGYYDDYKDFVRDDGKGENLLDGVSDDELPF
>SEQF1778_EEI66631.1 hypothetical protein HMPREF0534_0058 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAGITFSTAQRDAAKHLKEFYGIDVNDPEQLAKMEINVRNYRKRVERSFNKQNVLYKAGTYINSSLFNGNQRIDFLFTDW
KPDKQKNVVKAKEVANRCFLLAKKMFAEPQKALLSGKPGVGKTSLAMAMLNALCKKNLTVMTVSTLELARLMQKRIENKD
VQDKLDYLQNLMETVDVLLLDDFGTEGSMKNESKSVRQDLQEYLFRIANSRIDLNRNEVVNSTIITTNCSTKDLETMYNP
KLISRLLPHSSDNIVDFTGLEDLRV
>SEQF1778_EEI66632.1 hypothetical protein HMPREF0534_0059 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDNAIFNKVEFKGAVEKAQLKKNGEVTIQLTADIDDIDMNTLSLVMDSNGGVQIKLEGNQTELVDEDEESDGQIDLLDQE
EDEDEY
>SEQF1778_EEI66633.1 hypothetical protein HMPREF0534_0060 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNISDILTTDDFIDTINGFPEVAAKKSQTYGIIIYRTKEDMKRDLKNGKELLWIASIDPKVKADDMYSNEALNVEEEEAY
LDIPFITRKRIDDLLVRYINTPLPARDEWPGEERKESLRHLLEFERKNTAKKSPEYTRGMFDGLKAVFNIMDLRSDYEAT
MKPKRGVEIVLSD
>SEQF1778_EEI66634.1 hypothetical protein HMPREF0534_0061 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MWDIRLWLCDGGTQPMNHFSKKVEVDGYKFDSEKEANFYLRFVKTCGKRYEVHKSFELISKFPVGGYKQRSITYAPDFVV
YGADGSIEHVYDVKSGINQRAVDTAAKIRFKLFSLKTGLPVEVVVPRKNDFKMKLYGFTTNRIQDPHGRYDRHGNMKQKK
NGEPMYDYYDVHKSVNYDIRDTIGW
>SEQF1778_EEI66635.1 hypothetical protein HMPREF0534_0062 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIPEEVTEALNYLEQKGYVSQGDLRMPEDILPPDNKHLKAILAFRKQTDINDEIRIKWWIEQTREHLIAQGIVNPFEQA
YVLRKLGTAQDAILKVTRLKQFEFEHRIAFLFRGKRSYARKKIGDVEALLRYKNVRFLLEDMKRRYKNA
>SEQF1778_EEI66636.1 hypothetical protein HMPREF0534_0063 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLSFDQRKLIAQLERDMKELGLTVDYSEITTHNCIVFEAEGYNRIIIWLSNGCFLSLSLSNNPQFAKVAPKVLYIANKFM
ENYRKIDMEVTA
>SEQF1778_EEI66637.1 hypothetical protein HMPREF0534_0064, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIKEALNFINATTTVRAKVDGDYLNVFSKDMISDNWFLKLNTKAINWDTVLKHWGGLTDVAPEDLARAMDVIQRLLDTP
VNERFPEKKYRLVAKRETSFHPKYVSNIITGFDEL
>SEQF1778_EEI66638.1 hypothetical protein HMPREF0534_0034 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTTTTNNKTIDEQLTFDDQVIEKIAGITASKVSGILSLDGNMFSELADKVTSGSNPTKGINADVGEKQVALKMEATIEYG
KSAPEIFKAVCSEVQHAINKMTGLNLVKFELHINDVKTREEVEKDTK
>SEQF1778_EEI66639.1 hypothetical protein HMPREF0534_0035 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKLATIGVILGSLISISWIMWGFFPMIGILLAVTILGGIGYILDAKGYSLNKLAIKMLDKFAN
>SEQF1778_EEI66640.1 hypothetical protein HMPREF0534_0036 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAAWKKWWVSFVMMLQVIVGIVVVSLWFYRDQTWTIPVNDWLYSPIGQSFSAGVAVFLIIVALTVIAIAVFRPTTTKQMT
IARDGANKVQIDQHAVEHSLTTSIAKFDLYNPVINLKMHRNNHKADVTVHGMLSKRTNPKLIHTVLLQTIKENLKRDFDI
DLNKLHIKLSPYSNRESVNIV
>SEQF1778_EEI66641.1 putative gluconokinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNYLIGVDVGTSSTKAVLYDQDAQVITQANYGYELHRNAAGMAEQKPEEVINAAEQTIHDVATAADLSTGKLLAVSISSA
NQSLLLLDKNKKPLSRLITWADSRAQRAADNLKMMTEGQQLYMKTGVPVHPMSTLTKLLWLREDEPDLFNRTAYFADIKA
YLFYRLFNEFKVDMSIASSTGLMNLKTCDWDDQALRVAGITKDQLPEIVDGTTQATGLVPEAQEKLGVPADTPFVYGAYD
GALSNIGVGATKQNTVAITIGTSAAVRVVTDHPVIDPERRLFCYAINKGLWVVGGPLNNGGDVYEWAVKHLVDSSAVKNE
QVDPYTLANHVIEGVPAGAHGLLFHPFLGGERAPLWNAKARGSFFGLSHIHTRADMLRAVMEGISMNIATVFQAVRALVG
EPASVTATGGFARSKVWRQMLADILNCPVNVPDSFESGCLGSVVMAMQGLGMIDSLDTPQKFIGKVSSYQPDPAAVKVYQ
RYTPLFQQIEDMLAPAYSEIAKLQERQNN
>SEQF1778_EEI66642.1 transcriptional regulator, LacI family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MMNKQMTQHTTIADVAKAAGVSVTTVSRIINGRYDKMRSATRKRVEKAIKDLHFVPTASARQLRQTHSHVVGILVGDISN
PFSSLLAKGIDDVLQQAGYDILLMNTNNSQENESRALQRLYQQRVDGIIVQPNSRHFSQFAPAIHNDIPLVIVDREVDDQ
PSTVGKVTSANRDACYNLGKILYQHGYQNILTVSAHFAEASGQIPRIAGLKVAAADNGLSYHNIETRGHDRQWLAKTFLQ
QLNKLKGKTAVVSLMGPILFDLLAIFKELNLSFPDDLGLVSFDDWEWSQYVANGIFLLKQDMELMGSLAANKLLTQINQQ
STISSTTLLPVEIIARQSL
>SEQF1778_EEI66643.1 transporter, gluconate:H+ symporter family, partial [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
GIGGQLGHLAIIFGFGSMLGKLVSDAGGGYRIATTLINKFGRRWIQVAVILASFIIGLALFFEVGLVVVLPIIFIIAHEL
DMPLMYLGIPMAATLNVTHAFLPPHPAPTAITDILGANLGHVLLLGILAAIPTIIIAGPVYNWVLQKVYPRVYRKNIDIS
VLGEYKEFKLEETPKFGISVLTAMMPVILIAVATICSFIFPKNNPVNEFIQFIGAPDLAMLLSLIFAIFTMGLWRNKKME
EISTALADSIKQISVMLLIIGGGGAFKQVLVDGGISKYISGLFAQTNISPILAAWLITALLRMSLGSSTVAAMTAAGLVV
PMAHQFGGNSIMATLMVLSIGAGSVFCGHVNDAGFWMIKEYFGLSLKETLLSWTTLTSILALAGLGAVYAISLFV
>SEQF1778_EEI66644.1 hypothetical protein HMPREF0534_0030 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGLILMNITFTDQAIERLQRYELSSKKILLDFDDGVGPFSAVGGCSLDGDYRLILVKEDLDTPDYNEKITSNLGDVFIKD
HTAVQFDDEMEVRFNPRYFTMPLVSPKRVLTDNLEVLDLSNTDLNSQIDRAHDC
>SEQF1778_EEI66645.1 hypothetical protein HMPREF0534_0031 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTIIKIIRKYVEGMIFNDIISILLFCAFAYLFNFNFHRDNYAYAIVMFIGIMVFYGDFYHHLPINWKLYILLIATFYGLY
SQSSWGDKH
>SEQF1778_EEI66646.1 hypothetical protein HMPREF0534_0032 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MILLELMKAVLTVKKKAMRREIKLLTEENQQLRRYTLLASIGILLSMMIGLVRMVQKN
>SEQF1778_EEI66647.1 acetyltransferase, GNAT family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MELQYRKATLEDLPKIVEIYNQIIPSRLATADLTPITVDARKEWFEAFDENHPIWVIEHQNEVLGWVALEHFYGRPAYNH
TSEIAIYLDQRLRKQGVGTKTMEFIIGQLPNLAVDTIVAYIFGHNIPSLKLFKSFGFTQWGLLPQVAELDGIKRDLVILG
RHFK
>SEQF1778_EEI66648.1 tRNA nucleotidyltransferase/poly(A) polymerase family protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKIKQLPAIFEPARPVLQKIEEAGYEAYFVGGCVRDTILHDEIHDIDIATSAYPSEIKAIFNHTVDTGIEHGTVMILDHG
TGYETTTFRTESGYQDYRRPDKVTFVRSLSEDLQRRDFTINALALREDGEVIDLFDGLEDLQKHLIKAVGNPNERFHEDA
LRMMRAVRFASKLDFVIDTATLKGIKENAPLLEKIAVERIRVELEKLLLGQNPVAGLKDFIATGLYQYCPGLENAQAALS
ALLILNQWHLENEAQLWSVLSLQLQLDQKEIGKFLKKWKTANDLIAQVKKVVPAVQAIRQRTLTPTLMFNTGETALHDAN
QVAKLYGWAINDEELQKAYQKLPIKNAKELAIDGRILITKAGVKPGPLMGKILQQLTLAVVNGEIANDATTLLEKVEEIT
KEG
>SEQF1778_EEI66649.1 ABC transporter, ATP-binding protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MQTMRAEGLTSTYGEKTLFDDISFIINENDRIGLIGVNGSGKTSLLNVISGEVTPEGGGQITKPNDYTIGYLKQQPELDE
NKTIMEAVFEGKQPVFETIRQYELALERFTKHPEDPQAIDRYTKMQARMDQEDAWEADSRVKTILTQLKIKDVSQKIAQL
SGGQKKRVGLAQVLIQQPDLLLLDEPTNHLDLDSVVWLQDFLRSYKGAVLVVTHDRYFLDQITNHIWELSFGKLYHYEGN
YQDFVAKKAERVELAKDTEKKNQQLYKKELAWMRTGAKARSTKQKGRINRFHELEGKIGNLKTDEDIAINLGSQRLGKDV
IQFKDANLKFDNHQILHDFNWLVQAGDRIGITGENGAGKTSLLNVIAQRVPLDSGVLKIGETVKLGYYTQQTEGIDNDKR
MISFLSEIADNVTDKDGNKLSVTQLLERFLFPRFMHGTLIRKLSGGEKRRLYLLKILMQQPNVLLLDEPTNDLDIGTLTV
LEDYLDNFAGTVITVSHDRYFLDKVADNLLVFNGNGDIERYTGRFTDYLTAKKEEADKDKELKNDQKALAKKQASKQEPA
KKEKTKLTYAEQLEWDHIDEELDALDQQHQQLENEMAEAASDYTKIAKLQKQLNEIQEKIDEKTARWEYLSTYVDE
>SEQF1778_EEI66650.1 thymidylate synthase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATNINEEQYLDLIRYVLTNGHQKGDRTGTGTKSVFGYQMRFDLSKGFPILTTKKVPFGLIKSELLWFLRGDTNIRFLLQ
HKNHIWDEWAFKKWVESAEYQGPDMTDFGHRWLKDPEFKQVYLQEKKAFCQRILEDDDFAQKYGDLGLVYGSQWRKWKTS
QGDTIDQIANVIQQIKTTPDSRRMIVSAWNPEDVPSMALPPCHTMFQFYVNDGKLSCQLYQRSADIFLGVPFNIASYALL
THMIAHQCGLEPGEFVHTLGDAHIYLNHLDQVKEQLTRTPHEAPKLILPAEPKPIDQYEMTDIKLEGYTYEPAIKAPVAV
>SEQF1778_EEI66651.1 dihydrofolate reductase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSELNLIWAEDLNGWIGKDNTIPWHVSADMKHFKTKTTGHPIIMGRKTFASLGNKPLPKRENIVLTSQNIDAEGVKVVHS
LAALKEYLKANPNEYFVIGGATIYQQLLPMATKLTRTVINKQIVGDTKMPTIDYDRWHLVNHNNYEKDDQLICRFEEWEL
NV
>SEQF1778_EEI66652.1 channel protein, hemolysin III family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MDRQKETRDRRTLLIEIGNAVTHGIGAGLSIAGLILLIIRAVHTGSPMRIVTFTIYGSALILFYLSSTLFHALIFTRAKR
VFQILDHSMIFVLIAATYTPYCLVSICGWLGWTIFGVIWGLSVIGIVYKCIWLKHKSKYSTIIYILMGWLCLVAFMPLWH
ALGPVGFGLLLLGGLSFTLGALFYSRPTAYTHLIWHIFVLIGTILMYFSILLYV
>SEQF1778_EEI66653.1 EDD domain protein, DegV family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAKIKIVCDSSAGLTDEEIKKYDITIIPLSVMIDGTVYVERETITNEQFPEMMKNAKSLPKTSQPPIGKFVDAFDKLGED
GSEVLCVTMMESISGTVHAAEQAAGMTKTKVTVYDSQSTDQVMGFEIIEAAQVIEAGGSVEDAIAKMKEVLSKSELYLAI
DNLDNLVAGGRISKFAGAISNLLNIKVMLHVYDGQIHIESKGRGIKSMHKEWDKILDEMARGPKVKRIGISHVDAGKEVE
RLLAKIKEFYPEIEVTVRETVPIIATHTGMGACCLLYYTE
>SEQF1778_EEI66654.1 GDSL-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKKWTKWLLLSLLAIMIIGGGWYTVNHFKNLTSNSSKVVTPKYVEKKNVKLVALGDSLTHGQGDESNNGGYVGVIKEKIE
HRYHQTKVTTVNYGVTGDRSDQILDRLNHQSQLRSDLQSADVITMTVGGNDLMQILEKNVMGSERQVTSSVESGEKTYQK
KLIKLFDAVRKENPKAPIFVMSIYNPFYTYFPDVTIINKSINQWNQTTQDTMNNYKSMYFVNINKLMSYGQYQTKSQQQQ
LVKEEEKANQGQVSQKRVIEIMNHKDKNLNKYISTEDNFHPNHTGYVKIADQLFKVMQKHDSWEFTRR
>SEQF1778_EEI66655.1 hypothetical protein HMPREF0534_0018 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNSEEKKTNWWKWAFFCLVALIVISCGVVLNKATAPTPATTTSKAVKPSDSSVTVELNKKQVNALAANYLNQFLKGQKI
RYDFIVGDQYATLTGNTKFLGAKVRFAINFIPERLSNGNVLLRAKGLSVGRLNIPIKFVMGYIAKNYNIPKWVTINPQKK
TVLLDLNRYSKHRSLKYSAQEINMQEGRFKFLITVPTSNE
>SEQF1778_EEI66656.1 hypothetical protein HMPREF0534_0019 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRMSFYQFLMTQRNPNSADEVQQFANNAFLDTTFPKHSEDFDEISHYLEENADYLPSMTIFDEAWQRYIDAMN
>SEQF1778_EEI66657.1 ribosome biogenesis GTP-binding protein YlqF [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATIQWFPGHMAKALRQIREQMPLVDILFELVDARVPYSSQNPEVALAAGEKPKLLIMTKTDLADQKRLNEWIKYFEQHN
QPVLALDSRQNNVAKVVTAKSKEILKDKLAEEKAKGMKKRPIRAMCVGVPNVGKSTLLNHLVKKNVAATGNRPGVTTGQQ
WLRSSAELELLDTPGVLWHKFATPKQGIMLALTGAIKDSLYAKDDVALFALDYLRQHQPEMLKQRYHLTDADLDESVANP
DLLLTITAKMGFRDDYDRASERLIFDLRKGKLGPITLEVPADLNEDGLNE
>SEQF1778_EEI66658.1 ribonuclease HII [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKETISQIKARLQTITDTTDPYLQTIRDDSRKGVQAAIQQFERRLARQKEAEEAFNNRFKYEKYYWEKGYQYVAGMDEV
GRGPLAGPVVTCVVILNADFDLIGVTDSKQLTRHERENLYLRIVDEAVEVSIAVNDAPVIDQMNIYAATQDAMIRAVNHL
HHRPDHLIVDAVPLAIDIPQTTLIKGDQKSISVAAASIVAKEYRDHLMRDYDYVYPGYGFAQNMGYGTKEHLAGLEKMGA
TPIHRRSFNPVPKYLN
>SEQF1778_EEI66659.1 DNA protecting protein DprA [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLQVNDFLLRLSLCRGIGLVSKYRLWECAQQARCFNNIDYLIDHANVSLRSASSLKNNWTSPELDQAVALNSQEKFITIA
DPLYPITLKETYCPPLVLFYRGNLSLLHQPSIGVVGTRQITNYGQSALRGLLPPVIKRQIVVISGLAQGVDGFSHELALK
HGGLTIGVIGTGLDQAYPRNHQVLQDEVARQGLVISEYGRGESPVAYHFPERNRIIAGLSEVVLVVEAKKRSGSLITANI
GLDENRSVCAIPGRIDAPLSVGCNSLIAAGAKPILSAQDLLDEFRLYDSRA
>SEQF1778_EEI66660.1 DNA topoisomerase I [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MATKTTKSTAKKTTRRRSKIKKNLVIVESPSKAKTIGKFLGRSYKVVASLGHIRDLPKSRMGVDIENDYTPDYISIRGKG
DVIKELRKDVKNAKAVYLASDPDREGEAIAWHVSNILKLDDDQKNRVTFNEITKDAVKEAFKEPREINMDLVDAQQARRV
LDRLVGYSISPILWKKVKKGLSAGRVQSVALYLIIQRENEIKNFKPEEYWTIDADFKKGKEEFKASFYGENGKKVSLKNN
DDVQAVLSKIDKNKDFDITKVTKKERRRQPQPPYTTSTMQQDANRRLNFRTRKTMMAAQMLYEGIDIKEGAPVGLITYMR
TDSTRVASIAKHEASNYIHENYGAEYAAIKPVKGKLPEGAQDAHEAIRPTSVYRTPAKMKQYLTSDQYKLYNLIWSRFVA
SQMTAEVIDTMSVNLQQNGVDFRANGSKVKFPGFTKVYKRGTEKDNLLPELTEDDKAKMIKDDPAQHFTQPPARYTEAAL
IKTLEENGVGRPSTYAPTLDTIQRRYYVRLVSRHFEPTELGEIVNRIIEKQFPDIVNVQFTADIEGKLDEIEEGKQNWIN
VVDKFYQPFSKEVDAAEEEVDKIEMKDELAGTDCEICGAPMVIKMGRYGKFYACSRFPNCRNTKAIVKDTGITCPKCGQG
TVVERKSKKNRTFYGCSRYPDCDFVSWDKPIGRNCPKDGHFLVEKKVKGGKQVVCPNGDYQEEVQK
>SEQF1778_EEI66661.1 aldose 1-epimerase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MLNDYQLKGSITMITLQNQQLTVKIDELGAQLHSIKRQDNGIEYLWQGDPASWNRQAPILFPFVGRLKDDQYQYGNQTYH
QTQHGFARDRKFQVIEQTPSMVVMEQHDDSETKKAFPFSFSLQVKFELVIDKVEISYVVKNPSGDETLIYAIGAHPGFNM
PLTSTGGFEQTELSVKPATEYSRIVLDGAYNDSAHPQLINMQDSLSLNHDLFNKDAIIFKTDGGHFTAKLTDTVANHGVV
VDTFNTEYVGVWSQYPSTAPFVCVEPWWGIADNVKADGLLLHKQGMHRLAPNETDNYHFSIKPF
>SEQF1778_EEI66662.1 acyl-phosphate glycerol 3-phosphate acyltransferase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIFEIIGMIIIAYLLGSIPTGLWIGKYIYHKDIRKLGSGNIGTTNTFRTLGFKAGVVVLVIDILKGTLAASQPYFLGISG
TVNPLLIGLFASLGHTVSIFDNFHGGKAVATSAGILLAYNPLLFVVACLIFIFVLCLTSMVSTASMVGISAIFIIALFIH
AWILAIVAGILTGVVFYRHRSNIHRILSGKESMVSFGLGYYLREKKLNK
>SEQF1778_EEI66663.1 DNA topoisomerase IV, B subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGGHFVAKEEVKYDASSIQVLKGLEAVRKRPGMYIGSTDSRGLHHLVYEIVDNAVDEALSGYGDEINVTIEADNAITVQD
HGRGMPVGMHASGKPTPEVIMTVLHAGGKFGQSDGYKTSGGLHGVGASVVNALSSHLTLTIVRDHVRYQEIFKDGGQPVG
TLKKLGKTKAENGTTVSFKPDPKIFSTTVYDYNTLANRLRESAFLLKGIKITLTDKRAGQEKQDVFQFDNGIQEFVSYLN
EGKDVLGKTLYFDGKQDGVEVEVAAQYNDGYSESLLSFVNNVRTPDGGTHEAGFRSAWTKTFNEYAKKVGLLKANDKNLE
GSDVREGLTAVISVRIPERLLQFEGQTKDKLGTPEARKIVDAIVSEQLNYALMENGDFAQMLIRKALKAREAREAARKAR
NQARGGKRKGKKERNLSGKLTPAQSKNAKKNELFLVEGDSAGGSAKQGRDRKFQAILPLRGKVLNTEKAKLDDVLKNEEL
NTIIYTVGAGAGSEFNVEDSNYDKIIIMTDADDDGAHIQILLLTFFYKYMRPMIEAGKIYIALPPLYRLQRGRGAKTNIT
YAWTNEELTKLTKKMGKGAQLQRFKGLGEMNADQLWETTMNPETRTLIQVRIEDAELAERRVTTLMGNKVEPRREWIEEN
VQFTLADDQESDKLVENKGQLPQTKEPTINTWNK
>SEQF1778_EEI66664.1 DNA topoisomerase IV, A subunit [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MRNGKIEHMTLEQIMGDRFGRYSKSIIQERALPDIRDGLKPVQRRILFAMNKDGNTYDKGFRKSAKSVGNVMGNFHPHGD
SSIYEALVRLSQDWKLREPLIEMHGNNGSMDGDPPAAMRYTEARLSKIAGLMLQDIDKDTVEMALNFDDTEKEPTVLPAR
IPNLLVNGATGISAGYATEIPTHNLSEVLDALIYLIKHPTASLDKLMEFIPGPDFPTGGIIQGIDGIRKAYQTGRGRVVV
RAKTEIETLRGDRQQINVTEIPYEVNKAQLVKRINDLRLAKKVEGIAEARDETDRSGLRIAIELKRGANANGILNYLLKN
TDLQINYNFNMVAIDDQRPMRVGLKRILTSYLEFQKEIIRRRTQYNLTKAQQRLHIVEGLIKALSILDKVIKTIRASKNR
KDAKENLVKEYNFTPEQAEAIVTLQLYRLTNTDVTELKKEQEQLNSRINEYQLILTNENELAKVLTKEIRAIKKEFGNPR
RTKIENLVEKLEIDTKVTVANEDVVVLVSHAGYIKRSSIRSFKASEAEENGLREDDYPLLIQQTNTLSHLFMFTNLGHII
YRPIHEIADARWKDTGEHISQTIGLADNEEIIKAMIFDKLDQPGTIIMGTSDGQVKQTAFNDYKPGSRYKSHASVAIKLR
DNAQVVNVDYYEPTNENRSLLTISRQGYAVRYDVADVPVTGIRTAGVRAINLKDDDQVADQILVKDGQDIAVITQRGAFK
EMPVDEIEVGARARRGELVLRRLKSHPHEIADFLAYDHDYQGAFETITNRPAFQDIMATDHHLSSIKSNGTFVIDTDTQG
EPIKLRMKQTNVLSEEPVSQN
>SEQF1778_EEI66665.1 mutator mutT protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MTSASGALLNKQKAVLLQERADTGDWGFPGGYMEFGESFEQTVKREFKEDAGIEVVPVKRLAIFDQNFYTYPNGDRVQPV
NAFYLVEESSAKHYQPKITETTTTEYFSLDKEPPRFFNSQHEQMWQILKDFIHNRKDI
>SEQF1778_EEI66666.1 DHHA2 domain protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSKELVFGHQKPDTDAITAAMAFSYFQNQLGYETEAVALGEPNDETKFALKTFGMEAPRVIETAANEVDKVMLVDHNEPQ
QSVSDIDKVTVTHLVDHHRIAGFETAQPLWATVRPYGCVSTIITELFQEKHINIPANLAGMMLSAIISDTLLLKSPTTTD
HDREAVKYLAKIAGVEDYEKYGIEMLKAGTNLGAKSDADIVDGDAKTFELGGKKVRIGQVNTVDLDDVFARQADLESQMQ
SMMDDNDYDLFLLIATNILNSDSELLVIGDPAEKVEAAFGKKLNENKRMNLPGVVSRKKQVVPPLTDAFEG
>SEQF1778_EEI66667.1 hypothetical protein HMPREF0534_0003 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKLLRFFSYHQPRRIRVIENTLRSRRTVATLFWARQYGILEWLGADRTLNRQEYDQLINQLVADKLLAIDDQSQAILTE
KGAKVLKNEEETFYIPSFYDWYWLTNTQRIIQRLFLAIQVVSEFSYHQRKYVPLAISYGEMVAVKQWFRQNYHHDLVKNL
YTDLHRFGSALESENPRMTTDLFNVMIGYQRSGWTINQAAQELKIKIDDIQYLRHDEMLAVSAYARNFPGPLQQLLLPLI
NESPLNRSAQVTFDLYTQGEPIELIAQERRLKENTIREHLLEAAILIPDKLDWDILLPESKRDELSRFYKGEPTAWKFDE
QIASFYEYRLYQIFQGITNEK
>SEQF1778_EEI66668.1 ATP-dependent DNA helicase, RecQ family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MKNKQEILDVLQNHFGFEDFRPGQEETINALLEGKDTLSILPTGAGKSLLYQLPAYLLSGTILIVSPLISLMQDQVDRLH
RQGEKRVIMLSGQLIGKERASVLHNLKSFKFIFTSPEMLDNQQVLTALKKNKIALMVIDEAHCISQWGPDFRPEYLLLKE
VRQQLGSPTTLLLTATATPRIRQDILKKMGMTTAYQVIKSVDRPNIFLAVKSIATQKEKDGELLKLVQKFTGPGIIYFAS
RKLASQMAEWLENQTDLNVAAYHAGVAPIERFRIQNQFMNNELQVICATSAFGMGIDKNDIRYVIHYHLPSNLENYLQEI
GRAGRDGKQSLAVLLYANGDEMIQRQLTSVDLPPVTILEQIKNGKLSASVLGEQASLFAFYLEHSFTPQQIITMFERRKI
QTEKELQEMVAYIKEDGCKREYLLTYFGEQFAGSNEFCCDYELSDWATKLILPVSQPLSENNKVGWEDRLKGLLNITEN
>SEQF1778_EEI66669.1 hypothetical protein HMPREF0534_0005 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MSEERKESRRANDELWDKKFTDNEDLDSDGHLSRTEHRKQRSHNSMITTILIVLIIVLAATPLIYWINNKQSFNHPVRTE
QVAASSENSKKKESHSSSTSSEHSKKESSVSSSESSSSSIEESSSTQTSQSYSAPQSSSSYYRYSSSYRYGNGYQNRTTP
NRYSSYQQRYNNNQTYNRYNNNTENTNRYR
>SEQF1778_EEI66670.1 cytidylate kinase [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MCKGLQVAIDGPASAGKSTVAKLVAKKFNYVYCDTGAMYRAVTLAALNQGIDPKDDKKVAEIARQIKIDFEPGETEQRVF
LDGKEVTHDIRLPKVAANVSAVAAVPAVREEMTKQQRQIAENGGIVMDGRDIGTTVLPQAPVKIFMVASAYERARRRYAE
NQAKGINTTSLEELQKAIELRDKKDSTRKVSPLTQAPDAIKLDTTNMTIDEVVSEISKIIKKTQDELA
>SEQF1778_EEI66671.1 30S ribosomal protein S1 [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MAENNENKNDMLEALDSIEQVKVGDVVKGEVLAIDDDRQAIVGIKDAGVEGVVPAKELSTKPVEDINDAVKVGDELDLVV
ISKIGNDKENGSYLLSHRRLEARKVWDDIQKKFDEGEHITAKVTQAVKGGLVVDAGVRGFVPASMITDHYVEDLNQFKGQ
ELEFKIVEIEPSENRLILSHKEIIQAQHEKAAEKVFAELQPGDVVEGKVARMTNFGAFIDLGGVDGLVHVSEISYDHVDK
PSDVLTAGQDVKVKVLSVDPERERISLSIKQTLPGPWDDIEEKAPVDSVLTGTVKRLTSFGAFVEVFPGVEGLVHISQIS
HKHIATPADVLKPGQEVQVKVINVDPEHQRLGLSMKALEERPKEDENNNNNGENYRGRRRSRRNNNNRSFMNNAPEEESG
FSMGDLIGDKLKDLRN
>SEQF1778_EEI66672.1 ribosome biogenesis GTPase Der [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MERLANPIVAVVGRPNVGKSTLFNRIAGERISIVEDTPGVTRDRIYAHAEWLGKHFSMIDTGGIEISDQPLLTQIRQQAE
VAIDEADVIIFVADVENGVTDADEQVARILYRSNKPVVLAVNKVDNPERRSDIYDYYSLGLGEPYAVSSVHGIGMGDLLD
AVIKEFPDNAANDEDDSIHFSFIGRPNVGKSSLVNAILGENRVIVSNVAGTTRDAINTQFETADGQKFTMVDTAGIRKKG
KIYENTERYSLMRSMRAIDDSDVVLVVLNAEEGIRELDKHIAGYAHEAGCGVIIVVNKWDTLKEKDHRTMTDFTNLIRQE
FQYLSYAPIIFVSAKTKQRLNQLPGLIEEVYQHHRQRIQSAVLNDVLMDAIAANPTPTQNGRRLRVYYGTQVATEPPTFV
IFVNDPELMHFSYERYLENQIRKAFDFSGTPIHLIKRQRQ
>SEQF1778_EEI66673.1 DNA-binding protein HU [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MANKAELVSNVATATGLTKKDATAAVDAVFSSIQASLAKGEKVQLIGFGNFEVRQRAARKGRNPQTGEEINIPASKVPAF
KPGKALKDAVK
>SEQF1778_EEI66674.1 tetratricopeptide repeat protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MIYLKVIVKGGHNMTYSEQMLDQLEAGKLKEAQNSFKLALINDDDDMLFSLAEELYALGFLQQARTIYLKLLDCYPDEDE
LKTNLATIAIDEGHNDEALSYLAQIKPDSPAYVQSLLVAADLYQTEEEFEVTEEKLKEAYALAPDEPAVEFALGEFYFMV
GQYSEAIQYYFQLIKNGYTDFAKVDIAGRLGICYAQSGQFKKALGYFNQVKPEYQTSDIRFQKGLTRLQLGDTEKAIKTL
EDLINDDNQYASAYPELAKAYEKENKYQQALRVVQEGLSVDQYNEYLYSLAAEITSYLGDQKLMKKYLVKAHELAPENMT
ITLQYSNFLLHQHDDEANIKLLSPLVKEDETDPQLYWNLARSYQRTDQLELAGKYYEAALPAYSENPTFLKELINYYRET
GETDKLMDELEHYLRLVPTDTEMQDLYDQYEDYK
>SEQF1778_EEI66675.1 transposase-like protein [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MGNVNYGIIVGMKDTNRLTYGRTSVYNLNYHIIWGTKYRNKVLTGRVEIAFKRIIHEIAAKYGFEIAHMEIGKDDHVHLL
VSAPPKLSVTNIVRWLKGGTAYQLFRECPELQRSYWKKEGRHLWSPSYYVESIGAVNEQAVAKYIDDQRKKEVELE
>SEQF1778_EEI66676.1 transposase, IS605 OrfB family [Lactobacillus reuteri CF48-3A] [HMT-818 Lactobacillus reuteri clade 818 CF48-3A] 
MNKVIKGIKLRLYPNQSQRDQLWQMFGNDRFVWNQMLSMAKERYQNNPSSHFVNEYGMNYLLKQLKREYPFLKESDSTSF
LVVNHNLTEAFKRLFKHQGGYPRFKSRHVAYQAYTGRSTCKVLAKRRLQLPKLGSIRTSKTTLIGETKIKRYTVSYDPTG
RYYLSLQVETTVERLPKTGQMVGLDVGLADLAISSDGVKYGTFNAKLLEHQVTKWQSKFSKRRHRATVAVRQWNHNHQDT
KLALNDYQNWQRARLVKAHYQQRIANKRKDYLHKLTTALVKQYDVIVIEDLKAKNLQKNHHLAKSIANASWYQFRTMLEY
KCAWYGKQLVLVKPNYTSQICSHCGFNSGKKPLEVREWTCPKCGVHHDRDVNAAVNILQKGLKAVG
