>SEQF2266_AEE65525.1 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDFPREFDVIVVGGGHAGTEAALAAARAGAQTLLLTHNIETLGQMSCNPSIGGIGKGHLVKEVDALGGAMAIATDEAGIQ
FRILNSSKGPAVRATRAQADRVLYRNAIRAQLENQPNLWLFQQAVDDLMVQGDQVVGAVTQIGLRFRARTVVLTAGTFLN
GLIHVGLQNYSGGRAGDPPANSLGQRLKELQLPQGRLKTGTPPRIDGRSINYSVLEEQPGDLDPVPVFSFLGKASMHPRQ
LPCWITHTNARTHEIIRGGLDRSPMYSGVIEGVGPRYCPSIEDKIHRFADKASHQVFLEPEGLNTHEIYPNGVSTSLPFD
VQYELIHSLPGLENAHILRPGYAIEYDYFDPRALKSTLETKAISGLFFAGQINGTTGYEEAAAQGLLAGANAALQAQGKE
PWVPRRDEAYLGVLVDDLVTRGVTEPYRMFTSRAEYRLSLREDNADLRLTEIGRRLGLVDDVRWDAFSRKRDAVAQEVER
LKSTWVNPRVLPAHAAEALLGKAIEREYSLSDLLKRPNVSYEALMQARTDEGELLAGPGVLEDQVLAEQVETQVKYAGYI
ARQQDEVQKHLSHEQQPIPADIDYDAVTSLSFEVRQKLKTHRPETIGQAARVSGVTPAAISLLLIHLKRLHYGSRKQAA
>SEQF2266_AEE65526.1 glucose inhibited division protein B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAVPDIPGGPAQRLAQACDALRLPADAGQQQKLLRYIEQMQRWNRTYNLTAIRDPGQMLVQHLFDSLSVVAPLERGLPA
AGSGARVKLFDVGSGGGLPGVVLAIMRAHWDVTCVDAVEKKTAFVRQMAGALGLPNLQAAHTRIEQLEPAQCDVVISRAF
ASLQDFAKLAGRHVREGGTLVAMKGKVPDDEIQALQQHGHWTVERIEPLVVPALDAQRCLIWMRRSQGNI
>SEQF2266_AEE65527.1 ParA family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNIPPSKSARVFCIANQKGGVGKTTTAINLAAGLATHKQRVLLVDLDPQGNATMGSGIDKSTLESNLYQVLIGEAGIEQ
TRVRSESGGYDVLPANRELSGAEIDLVQMDERERQLKAAIDKIAGEYDFVLIDCPPTLSLLTLNGLAAAHGVIIPMQCEY
FALEGLSDLVNTIKRVHRNINNELRVIGLLRVMFDPRMTLQQQVSAQLESHFGDKVFTTVVPRNVRLAEAPSYGMPGVVY
DRASRGAQAYIAFGAEMIERVKELD
>SEQF2266_AEE65528.1 GNAT family acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAVLAVPAAHPAPAAGGELARLEEAALNATTVREQMLYEGWLVRWAPSRAKRARCVNVLGLSTRPLDERLAYCTRWYAG
HGVPLIVRLTSIGPDFSLDAQLHERGFVAFDRTCVMAASVVPFTAQAPSGLVFERTTPGRFAQEAGRLQAAPLENLPLLV
RDASGECIAAGLAAFDAELVGLFDIVTAPQRRRQGCGAAVLKYLLEQASHAGARQAYLQVEPQNTAARALYARFGFVDRY
TYWYRSMSEATPV
>SEQF2266_AEE65529.1 chromosome partitioning protein ParB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVTKKPKGLGRGLDALLGADVPAIDNIGKAPAAAPEGPPATLPVSKMRAGKYQPRTRMDEGALNELAESIRTQGIMQPIL
VRALGADAPGQYEIIVGERRFRAAQLAGLKEVPVLVREVADENAAVMALIENIQREDLNPLEEAHGVRRLLDEFGLTHEQ
AAQAIGRSRSATSNLLRLLNLAAPVQTMLLAGDVDMGHARALLAVDAATQIQLANQVIAKRLSVREAEKLVARAQKDVDA
APRKKGNGASRDVTRLEEALSDHLGTRVALKVGAREKGQIVIDFHGWEHLNSLLERQGLSGVVDA
>SEQF2266_AEE65530.1 elongation factor Tu [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEARGYDQIDAAPEEKARGITINTSHVEYETETRHYAHV
DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSK
YDFPGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRIERGVVK
VGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGG
RHTPFFNGYRPQFYFRTTDVTGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK
>SEQF2266_AEE65531.1 preprotein translocase subunit SecE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNTSIETVTSTADRIKLGLAVLVVIAGIVGFSMLDAQPMVARIGVFVGGLVVAALLAWFSEPGRRTLSFAGESYNEVKR
VSWPTRKETIQMTGIVFAFVAVMGLLMWVLDKGIEWVLYGLLLGWK
>SEQF2266_AEE65532.1 transcription antitermination protein NusG [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKRWYVVHVYSGMEKSVQKALNERIERAELQTSFGRILVPSEEVVEVKGGQKSITERRIFPGYVLVEMDLTDETWHLVK
NTNRVTGFLGGSGNRPTPISEREVEKILNQMEEGVEKPRPKILFEVGEMVRVKEGPFADFNGNVEEVNYEKSKVRVSVTI
FGRATPVELDFSQVEKT
>SEQF2266_AEE65533.1 50S ribosomal protein L11 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKKIVGFIKLQVPAGKANPSPPIGPALGQRGLNIMEFCKAFNAKTQGMELGLPIPVVITAFADKSFTFIMKTPPATVLI
KKASGVQKGSAKPHTDKVGTLTRAQAEEIAKTKQPDLTAADLDAAVRTIAGSARSMGITVEGG
>SEQF2266_AEE65534.1 50S ribosomal protein L1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKLSKRAAAIAQKIDRTKLYPVGEALNLVKETATAKFDESIDVAVQLGIDPKKSDQLVRGSVVLPAGTGKTVRVAVFAQ
GEKADAARAAGADIVGLDDLAEQIKAGQMDFDVVIASPDTMRVVGALGQVLGPRGLMPNPKVGTVTPDVATAVKNAKAGQ
IQYRTDKAGIIHATIGRASFGVEQLQNNLAALVDALQKARPAAAKGIYLRKLAVSSTMGGGARVEIASLSAN
>SEQF2266_AEE65535.1 50S ribosomal protein L10 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLNRQEKAVVIEEVSAQVAKAQSIVIAEYRGLDVASVTVLRKTARESGVYLRVLKNTLVRRAVAGTAFEPLSEQLTGPL
IYGISADPVAAAKVLAGFAKSNDKLVIKAGSLPNSLLTQDGVKALATMPSREELLSKLLGTMQAPIAQFVRTLNEVPTKF
ARGLAAVRDQKAAA
>SEQF2266_AEE65536.1 50S ribosomal protein L7/L12 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALSKAEILDAIAGMSVLELSELIKEMEEKFGVSAAAAAVAVAAPAAGGAGAAAAEEQTEFTVVLLEAGANKVSVIKAVR
ELTGLGLKEAKDLVDGAPKPVKEALPKADAEAAKKKLEEAGAKVEVK
>SEQF2266_AEE65537.1 DNA-directed RNA polymerase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPYSYTEKKRIRKSFAKREDVQNVPFLLATQLQSYLTFLQADTATSDRVNEGLQAAFSSIFPIVSHNGMARLEFVSYALG
EPVFDVKECQQRGLTYASPLRAKVRLVLLDREVSKPTIKEVKEQEVYMGEIPLMTGTGSFVINGTERVIVSQLHRSPGVF
FEHDRGKTHSSGKLLFSARVIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGMTPESILAHFFDFDNFELKSEG
GMMEFVAERWKGEMARFDIADRDGKVIVEKDKRINAKHLRDLAAGGIQRVSVPEDFLYGRVLAKNIVDPDTGEVVAHAND
EITESVLNAMRAANVRDIQTLYTNDLDRGPYISQTLRADETADQMAARVAIYRMMRPGEPPTEEAVEALFQRLFYSEETY
DLSRVGRMKVNSRLGRGDDSTGPMTLTNEDILETIKVLVELRNGRGQIDDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAETENLMPHDLINSKPISAAIKEFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTH
YGRVCPIETPEGPNIGLINSMALYARLNEYGFLETPYRKIIDGKVSDQIDYLSAIEESHYVIAQANAALDDEGRFVDDLV
ACREAGETMLTAPGNVHYMDVAPSQIVSVAASLIPFLEHDDANRALMGANMQRQAVPCLRPEKPLVGTGVERTVAVDSGT
TVQALRGGVVDHVDADRVVIRVNDEENVAGEVGVDIYNLIKYTRSNQNTNINQRPIVARGDKVAKGDVLADGASTDLGEL
ALGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHIEELTVVARDTKLGPEEITRDISNLAETQLNRLDDSGIVYIG
AEVSADDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIVRDKRAQSIIDDELR
RYRQDLNDQLRIVENDQFDRIEKMLVGKTVNGGPRKLAKGATLTKAYLADLDRWQWFDIRLADEQHAVVLEQAKESLEQK
RHQFDLAFEEKRKKLTQGDELPPGVLKMIKVYLAVKRRLQPGDKMAGRHGNKGVVSRITPVEDMPHMADGTPADIVLNPL
GVPSRMNVGQVLEVHLGWAAKGVGYRIADMLRDERTAQAKSVRGYLEKVYNTTGSSAHIDSLTDEEVLELANNLKKGVPF
ATPVFDGATEEEIGKMLELAYPDDVAARMRLTASRSQAWLYDGRTGEQFERPVTIGYMHYLKLHHLVDDKMHARSTGPYS
LVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYTLQEMLTVKSDDITGRTKVYENIVKGDHVIDAGMPESFNVLVKEIRS
LALDMDLERN
>SEQF2266_AEE65538.1 DNA-directed RNA polymerase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKALLDLFKQVSQDEQFDAIKIGIASPEKIRSWSFGEVRKPETINYRTFKPERDGLFCAKIFGPIKDYECLCGKYKRLKH
RGVICEKCGVEVTVAKVRRERMGHIELASPVAHIWFLKSLPSRLGMVLDMTLRDIERVLYFEAWCVIEPGMTPLKRGQIM
SDDDFLAKTEEYGDDFRALMGAEAVRELLRTIDIDREVETLRGELKATSSEAKIKKISKRLKVLEGFQKSGIKAEWMVME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIILRNEKRMLQEAVDSLLDNGRRGKAMTGAN
KRQLKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFIFNRLEMMGLATTIKAAKKL
VESQEPVVWDILEEVIREHPVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLASNNVLFPANGEPSIVPSQDIVLGLYYTTRERINGKGEGIFFADVSEVQRAYDNGEVELQTRITVRLTEYERDEQ
GEWQPVKHRHETTVGRALLSEILPKGLPFTVLNKALKKKEISRLINQSFRRCGLRDTVIFADKLMQSGFRLATRGGISIA
MEDMLIPKAKEGILAEASREVKEIDKQYSSGLVTSQERYNNVVDIWGKAGDKVGKAMMEQLATEPVVNRHGEEVRQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTRRL
VDVTQDLVITEDDCGTSHGYAMKALVEGGEVIEPLRDRILGRVAAIDVVNPDTQETAIAAGTLLDEDLVDLIDRLGVDEV
KVRTPLTCETRHGLCAHCYGRDLGRGSHVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRSALASAVETKSNGTVGF
ASTMRYVTNAKGERVAISRSGELAIFDDNGRERERHKIPYGATVLVGDGEAVKAGTRLASWDPLTRPIVSEYSGAVRFEN
IEEGVTVAKQVDEVTGLSTLVVITPKTRGGKIVMRPQIKLVNENGEDVKIAGTDHSVNISFPVGALITVRDGQQVAVGEV
LARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDG
QVVNKGEMIVDGPADPHDILRLQGIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTEFIPGEQVE
RSELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGT
GLAYHIARKDKEALEAAEREAARQLANPFEDAPVTVGGEPEAPAADTPSDDSAE
>SEQF2266_AEE65539.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIILRPFLPSLSLAVLALSGCANLSQPAAEAPATPAALQALAEVRTEYGAGHYGEVIRRVARSDELAAAPKAVRIEAFK
LQAFSYCVSNYTQLCEDAFVRILHLDSSFTLAPNEAGHPAWGPVFRAAQSKAGT
>SEQF2266_AEE65540.1 hypothetical protein BPTD_0017 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLFAASQHPRSPFAGAAPLAHRPLSAIAATAAGGVPQARIKRLLGELVPQLASVHEQGHICGDITVDSVGLDESGRAHL
LALNGAAQGEAALPAPGYAPFELYVEDPAWPRGPWTDIYALSAVAHSLITGRRPPAAPERSVNDGYQPLAQRDLPKYDND
FLRAIDAGLAVRPHTFEAFVDSLKFPEPEPPAEAMAPLPSEPPPRDEVHDEEPVRQRPAVRSILFAILLALATLGVAVYW
WQRLTGTPSGVITSSERVTTPGATATPSDSREAEPPAAGAASPQGGDAGSADTSGAAPPAQAQAGPDAAPAPDVAPEDAA
TDAQAESEAAATPAPAAARVTVRINVQPWGEIWINGVRRGVSPPMKELRLVPGRYSVVVRNADLPPYRATL
>SEQF2266_AEE65541.1 putative peptidoglycan binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRPFAPAFMLVCALVASAAVQAQPAGSLGENFLYRVRSGDTLIALASTYTGNESNWSILQTLNRVDDPQRLPIALELRI
PLAMIPVQAAGAEVVHVSGNATADGQALRVGTQIVEGSTIRTASGSFVTLKLSDGSQVTIPENGTVAANRLRQFQRVPLT
DSIFQVQQGELESRVAPGGQGVGRFEIRTPVAVTGVRGTRFRVKSSPRGASSEVLEGSVRLQPHAPDAALATPVAVSSGY
GANVGSDGAFSGVQALLPAPQLQAPARAASGGWTVPFAPVSGASAYIVRVSRDAEGMHVVASDRFDTNDVRFRAPGAGTY
YVAVRAVDASGLNGREAVQPFEGANVLSTPYGLSVATGTGDLVLLSEF
>SEQF2266_AEE65542.1 two-component response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRNTAPHCLKCVQARAFPFERLKAGREPADWQGFVMKQLSTLIMTPDDADRDRIIAAMLLAGISAKGCSTPLELFGLLSE
DTYDAVVMDLSELGELGYALVARLRGSPELGIIVIGGNLTLDARLRCLQSGADACVPLPADERELACVLLALARRLPAWQ
EDEEAVAQRGTDDEGWELRDQDWTLVAPGGEELSLSANERQIVRLLLGAAGRAIGRAELASELAVDGPAVRSTGERSIDV
IVSRLRRKAELAGLVLPIRTVYGSGYLFANS
>SEQF2266_AEE65543.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF2266_AEE65544.1 hypothetical protein BPTD_0024 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEMTMEQEPLNGWPQPYRLLDAQPYWDALQDEKLTYQQCVACRQSVWPAHSRCPHCSSDQLVWQASSGRATVYSFSTVTR
GPTPVWASIVPYTVGFVEMDEGYFLFTQIEGPPGSIGVGDKVQVRFVRRGAQILPVFVSADLPA
>SEQF2266_AEE65545.1 putative thiolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAMAMTPKPTAAIVGMGDAYASMQDRKDPIQLAVAATHKALADAGITKDQVDAVFTGRSPWADKRSQWSNIFCSHMHMP
VTITSEITMHGAGLNATVAMAAQMIAAGRAQYVLCLQSDATELFVDAVAMGAEADADPQFEIPYGPTIPALYAQAACRYF
HEFGITEEDLADVAIANQSWAMHHPHAAKARFGSIDRAKVLSSPYVATPLRRWMCSTWGGGTGGALVVTSVDNARTAQDP
VYVMGYGSATTHEYLGDRMNMRRCRYPSLGAFPNLTHTATAEAARQAYESSGLTPADIDMAQISVNFAHMGPLIMEDLGF
AAKGRGMDLYRAGRTGVDGDLPIDTNGGWLSFGQPGISCNMDSYAEAVRQLRGNALGRAPARRPRTVLVQGSGGMLAAGS
VTILASEL
>SEQF2266_AEE65546.1 MaoC family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARINNRIDQTFDEIEVGKVFRSGGRTITETDVVNFCALTGNWIEIHSNVQYASKTRFGKRLVQGSLTYSIVTGLIQFGL
GIQANYGIDNMRFLAPVSIGDTIYAVCEVMRKKEKDEKYGVITFFMKAVNQDGTVVQKGEWSLLMLRRREDLDALVGASL
PEVAA
>SEQF2266_AEE65547.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRQVDFFTLRLFLSAVEEGQIGRAALRENIAPSAATKRIQELEDVVGLRLLERTPKGVILSPAGEVLVRHIRQIFTNVDE
LRAELSAFSEGVRGEVSVASARSIIAPYLAHEFGAYIRDYPLVDLIVREVENAAIVQAVAQGDADIGVFAAAPALDLSGV
DVMPYRQDRMVVVMSHGHRLAQRQSVTFEDLLSENLIVPAALHMALRTAADRLGREFEPKYGVTSAGVAISLAQEGLGVT
IQPECLLDLKVFEHAVGVELAESWANRSIHIATARGRAAGPAANLLLKQLLDRPRALSSVSD
>SEQF2266_AEE65548.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRYEDFEFLLCEPQDDGVMLVTLNRPDAMNATNDRMHWELTRIWGVVNDDPGVKAVVVTGAGERAFSAGGDLSVVEAMSN
SHETTMRVMKEASDIVYNMLACDKPIISAINGTAVGAGLADVSVMAEDAKLTDGHARLGVSAGDHAAIIWPILCGMSKAK
YYLMTADFVDGKEAERIGLVTFCAPRAEVLPRSLAIAAKLARGSQTAIRATKKSLNNWMRTAGPAFDNSLALEMLCFLGP
DVKEGLAALRDKRAPDFPSARLP
>SEQF2266_AEE65549.1 hypothetical protein BPTD_0029 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAAPSPSTPPGNCPPLEQAVVRFIQDLKYEHIDAAALAGVNRLMRDQLALQVGISAMPWSRQLLDYALTQQRPGVSRVS
ASTLKMSAADAAFVNGSYGHGFEYDDAHGPSYSHPGSCVIPAALAIGEELGSSLQDVITAMVAGYEVYTRIGLLAAPDLL
RRGYHPHCTLSNFGAAAVAAKLRGFDAETTLHALAIALSHTSGTTEYSSTGGSIKRIHAGLGTRNGMMAADMARAGITGP
RAFLSGNKGFFKTFLQRPAGEAPQQRFAPGEPFQVATVWLKAYCACYCTHAYIDALRPYAERRGEIADIHLKITPHFNVV
VGTANACAYAPTNIEHVQFSLPIQAALAVQGLGNGYRIHRDYLDGRVDMAPVIAMARGIRITEDPGLETRHPGKFVADVT
VTFRDGSAEHVFVADPIGTDTNPMPEHEQDAKFMELTADALGQARARALLAALRKMDPTMKAADLMALCEPAP
>SEQF2266_AEE65550.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE65551.1 transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDHDASFSLKDIAVPAFGPSILYGVSNGAILPVVALTARELGASLATSGLIVGLVGIGSLVSNIPAAMFTSRHGERRSM
VGAAALSVVALLLCIFAGTLWMLATGVFMVGMASSVFLLARQGYMIDAVPAYMRARALSTLAGTMRIGVFAGPFAGAALI
HFMGLQGAYWVAAVAMTGAGLIAWFAPDMAPPRRRGEAAVARPRLLDVARAHRQVYLTLGLGILLVSAVRASRQVVIPLW
ADHLGVNPATTSLIYGLVAAIDMSVFYPAGMLMDRRGRLWVAVPSTLLMGCALIGTSLTSGVAGFVIVAMMLGMGNGIGS
GIVMTLGADAAPASGRTEFLGLWRLMSDLGGSLGPVALSGITALVSLAAGVAAMGGVGLAAAAVFWHWLPRGQAPR
>SEQF2266_AEE65552.1 glycyl-tRNA synthetase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTFQQIILTLQDYWDKQGCALLQPYDMEVGAGTSHTATFLRAIGPEPWRAAYVQPSRRPKDGRYGENPNRLQHYYQYQV
VLKPAPPEILDLYIGSLKALGIDPTQHDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLDCTPTTGEITY
GLERLAMYLQDVESVYDLVWTEGANGNRVYYRDVFHQNEVEQSTYNFEHASADMLFAHFNDYEAEAKRLMDVPLALPAYE
AALKAAHTFNMLDARGAISVTERAAYIGRIRNLSRAVAQAYYDSRERLGFPMLAGRKAAGEAA
>SEQF2266_AEE65553.1 glycyl-tRNA synthetase beta chain [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTDIRPLLIELFTEELPPKALQKLGQAFAEGVRATLARHHLLADGCAVEPFATPRRLAVRLSAVLAQAPEQAYAEKLMP
VKVGLDANGQPTAALAKKLAAKGLEGLDPATLERESDGKQEYLVARGTAAGAQLAVGLQEGLDAAIDGLPIPKVMRYQLA
DGQTTVKFVRPAHGLVALFGADIVPIAALGLQAGRATQGHRFQSNGAIELATAQGYEADLAERGRVIASFEARRAEISRL
LDEHAQRLGATLGDDPEVTALLDEVTALVEHPTVYVGQFEEQFLQVPQECLILTMRLNQKYFPLFDPASGKLTHRFLIVS
NMQVADPANIVEGNQRVVRPRLADAQFFFETDRKTPLAARVEQLGSIVYHNKLGTQLERVERVRAIARGIATALGGDAAH
CDRAALLAKADLGSNMVGEFPELQGIMGAYYAQGDGEPADVVTALRTQYRNRYDAPVDAATLTAATLFIAERIETLVGIW
SIGLAPTGERDPFGLRRAALGLISAFEQLAAGGWLKVSEDGPLSLDGLLALAAQAFPDGKIGADTLAEVRAFIYERYRNQ
LIGEHDRNAVEAVIALAPPLHQVAARVRAVAAFAQLPAAASLAAANKRIGNLLKKAEGEIGAVDAALLQDPAEKALAEAV
AQLRPQARAQLQAGDFAASLATLAQAREPVDAFFADVMVMADDAALRANRLALLGQLHGLMNQVADISRLAQ
>SEQF2266_AEE65554.1 D,D-heptose 1,7-bisphosphate phosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLIILDRDGVVNQDSDAFVKSPDEWIALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMG
GVVDAIFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLAQGGLPE
GTRVCEDLAAVAEQLLQEA
>SEQF2266_AEE65555.1 acyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAWLRSALYALFLIVTVIPYAFACILWAPLPLHWRYRLTVGWPRLAIWGARVICGIRWRIKGAENLPDGPAILLSKHQSA
WETLFFPAHMPREVCFVYKKELHMVPFFGWGLALLRMIPIDRAKGRDAFEQVVRQGQVRLDEGRWPLLFPEGTRVPPGKT
GRFKMGGALLASRTGARIIPVAHNAGECWRRNAFVKRPGLITVSIGPAIESQDVAPEVLNAKVQAWIEGEMRVLNPERYG
QA
>SEQF2266_AEE65556.1 hypothetical protein BPTD_0036 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKPDQLELLFDVAPPADPASAAPRKTPKARPAPPAPAAIATPCPDPLPPGARWREVHTEQQPIGFVLLRSRRRSIGFVV
ADDGLRVTAPNWVTLEQIDDAVREKARWILAKLRDWHARKEQLAMAHTRWQAGGELPYLGKRIVLGLGAERRQACLSGDA
DAPCDGDTLWLALPVDADQARIRDAAQAWLQQRAGAWFGARLAHFLQLTGLRIRRWRLSSAATRWGSCTSDGNIMLNWRL
IHFAPAIIDYVIAHELAHLREMNHSQDFWTEVGHILPGFEDAKNVLRRHDPATLPQF
>SEQF2266_AEE65557.1 lactoylglutathione lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLLHTMLRVGNLDKSIDFYTSVLGMRELRRKDYPDGRFTLAFVGYQDESEAAAIELTHNWDTEKYDLGTGYGHIAIEVD
NAYEACDKVKEKGGKVTREAGPMKHGTTVIAFVEDPDGYKIEFIQKKGRND
>SEQF2266_AEE65558.1 peptide deformylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIHAILKMGDPRLLRVAAPVERYDTPELRALIDDMFETMAHAQGVGLAAPQIGVDLQLVIFGFERNDRYPDAPAVPRTIL
CNPVIEPLSDEMEDGWEGCLSVPGLRGLVPRYRHIRYSGYDPAGQRIEREAEGFHARVVQHECDHLIGRLYPTRIRDLTK
FGYTEVLFPEMDPNAD
>SEQF2266_AEE65559.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF2266_AEE65560.1 hypothetical protein BPTD_0042 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISTLFRFMLKKRVRILWQAGCAALLLAACSPSYNWREIDVADGRVRAAFPGRVQTDTRDLALAEVPLRFSLTSARVEQA
VFAIGHAPLPPEVAADPARRRALGEALARSLYANLGVQPPDPLPAPGADIEIHAPPGERDDWLLARVWATDDMLIEAVAA
GTRQTLPAERAREFIDAVELRR
>SEQF2266_AEE65561.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPQRTTLTPRELDCLHWSALGKTSWETARILGIAARTVDFHLANACAKLGVANRRAAVARAVQCGLLPALTAAAPPHR
>SEQF2266_AEE65562.1 hypothetical protein BPTD_0044 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAVVQFYWSAVVLLLPLLACAGIGAYWAKRDYPFGGTFITMLVTTVTTPALVFHTFVTTQLDDRALLAIAGASLLALLA
CALACAGLLRLFGLPVRTLLPTAFVPNAGNLGLPVSQLAFGDAGLSAAVAFFAVNSFVTHTIAVRMLPGANTPGSWKSPV
LLASVAAVTLRALDIPVPDWLVATSRMLGAVTVPLMLLSLGHALALIPANGMRAGAVVAALRLAVGLAAGYAVVWLLGLP
DLLAGALALQMAMPCAVVSYMYARRYTDVGDIAAGAVLVSTVVFLLLAPALLWFTRQ
>SEQF2266_AEE65563.1 homoserine O-acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNPVLNPALPAMAAAPVAATPSAVGSAGIVAPVFLRFDEPLPLASGQTLNGYELAIETYGTLNAQRTNAVLVCHALNAS
HHVAGVSADNPKDVGWWDNMVGPGKPVDTNRYFVIGVNNLGSCFGSTGPASINPATGRPWGAAFPVLTVEDWVRAQARVA
DHFGIERFAAVMGGSLGGMQALSWAITCPQRVANCVVVASTPRLSAQNIGFNEVARRAIITDPDFHGGDYYAHGTVPGRG
LSVARMIGHITYLSDDDMAEKFGRTRREPAADGAYRYGYDVEFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARA
TGGDLARALAPATADFLLVSFSTDWRFPPERSREMVRALLKNGSPVTYAEIDAPHGHDAFLLDDARYHAVVRGYYERIAR
ELGLNGAVAPEGNSA
>SEQF2266_AEE65564.1 hypothetical protein BPTD_0047 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPVSARFEPAALRPDLARIAGWIEPGSRVLDLGCGDGALLAYLRDHRQVRGAGVEIDDNYVIACVQRGVEVIQQNLEDG
LALFDDQQFDTVVLSQTLQSMHRTEHILREMARVARHGVVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTL
RDFEDLAGTLGLRILQRATFNEGREVRVFPSWRSTLALYRFAAS
>SEQF2266_AEE65565.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65566.1 muropeptide transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAPLLVLGFASGLPLALSSGTLQAWATVENVSLQSIGFLTLAGTAYTLKFLWAPLIDRYVPPFLGRRRGWMLLTQVLLAA
AIMVMGMLSPGSALLPLALVAVLVAFLSASQDIAFDAYSTDVLRQEERGAGAAMRVMGYRLAMIVSGGLALIVADRWLGW
GNTYVLMGGLMLACALGTLWAPEPERPANPPRDLGAAVVEPFREFFSRRGAIDMLLLIVLYKLGDAFAGALSTTFLLRGA
GFSATEVGTVNKVLGLAATIVGALAGGSIMTRWGLYRSLMAFGLLQAVSNLGYWLIAVSPKNLYLMGLAVGVENLCGGLG
TASFVALLMAMCRQQFSATQFALLSALAAVGRTYLAGPLTPVLVEWLDWPGFFIVTVLIALPGLWLLRLRRNVIDELDAQ
TAR
>SEQF2266_AEE65567.1 putative aspartate/glutamate racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSDDDKQFEGRFLGVLGGMGPMAGASFMQRLVALTEAACDQQHVPAILWNDPRVPDRPAGQSGQGADPLPWMRHGIRRL
EQAGATAIAIPCNTAHVWYPQLAQSASVPVLHIVEAVLDDLRRQGIHAGRVGLLATATTLRLGLYQHEMLAQGYEPVVPP
VDLIDGLCAQSIRLVKQNLLPQALPPALACIDSLRAMGVDAIVLGCTELPLALPHALRAELGVAMTDSIDALALAGLGWY
RRGG
>SEQF2266_AEE65568.1 glutamate/aspartate transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNEFDFDVIGRSLGYLFRDGMVFTLKLTFLSTAMGLALGTLLAMCRLSGIKPLSAVAAAYVNGLRALPLILVIFWFYFLV
PYIGGWLTGAGRPLQVGGFTSALITFTLFEAAYFCEIMRAGIQSIPRGQTSAAYAIGLNYWQTMAYVVLPQALRNMAPVL
LTQTIVLFQDTSLVYVLSLTDFLGAGINVAQRDNRLVEMYLFVAAVYFVMSFAASRFVHYLQQRNTMAA
>SEQF2266_AEE65569.1 glutamate/aspartate transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSRLRSLDTTMNYNWNWHIFLEMSPTGGIYLGTLLTGMAWTLGTAALAWILALGIGIVVGVARTTQSKWARILGATYVE
FFRNIPLLVQMFLWYFVVPEILPVQLGDAIKSIPPPWGIFIPAVLCLGFYTSSRVAEQVRAGIESRPARQRMAATALGMR
PSQVYRYVLLPTSFRIILPPLTSELLNLIKNTSVAFTIGLLELVGAARSMQEFSFQVFEAFAGATLCYFLLNLIVLRAMR
YIETRLAVPGFIGPVSATTKLAPT
>SEQF2266_AEE65570.1 amino-acid ABC transporter binding protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKISTVFFAALVGVAASAPAHAEGRLDKIKSSGTITIGHRDASIPFSYLDDKQKPIGYSMEICEKAVEAIKAKLGMAQIK
VNLVPVTSSTRIPLVANGTVDLVCGSATNTVERQQQVAFAPTTFVTATRFAAKKSSNLKKLDDMKGKTVVSTAGTSNIRW
LTQANEKDSLDMRIIPTKDHPAAMLTVANGRAAAFFMDDVLLAGLVATERKPDEWMISEDTYTVEPYALILPKDDPAFKK
VVDDTVTGMMRDGSLAKLYKKWFESPIPPRNVNLHLPMSAALQRVIANPTDSADPATYR
>SEQF2266_AEE65571.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE65572.1 hypothetical protein BPTD_0058 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATKSLRRQDLEVHLGSTGQVVGRLYLGSGKRSAFSYDERWLRDARFFTLSPDLLPVLSVQHPQEVFFRALEDTAPDSWG
ERVIRRAHARLRQQDGETPPLEPVDFLMWVDDEARVGALRLFDPHAKVYLRSGATPGHVPPLVELDKVVQAARALEAGTE
TARDLQYLLGQGTSLGGARPKSSVRDTDGRLALGKFPSQADRRDVIRGEVLAMHLAAKAGIKVAAARVELIGGTAVAIIR
RFDRTDDGGRIPYVSAATMLQSDGRDTVHAYTELVDVLLREGADPIADIHQLWRRLVLNFLICNTDDHLRNTGFLYDSRN
HGWRLSPAFDLNPMPGDRRESKTWLTEDSGPIESRDMLMEGAPYFRLAAEEAAAIWTEVAQAVGSWRVVARGLGMQGTDL
VDFEPAFA
>SEQF2266_AEE65573.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMPTSEQRNCSPRVAMPRPVERALQRLGQDISTARRVRRLSQEDLAQRVGTSLSTVRRMEDGHPGTALHTFLRALHVLG
RLDDVLRVMATENDVLGMELVREQLPQRVRTVRGSKPRVGHSAAVKEGASDDADELEGF
>SEQF2266_AEE65574.1 hypothetical protein BPTD_0060 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTELPSLEHADGGAVIGGAVPELTRAFRMPEAEFRCDFLWDSRLVSRPRLLGAFRIRQIAALMLDWLSSEAEVLKRIVA
NRQALASTMYFALDSAFPYPEHAFAQSVYVGINIPRAKLQLSPDQRPGDVDCLIVPFSDNEILLERTIAIEAKIVRPSIS
NPGRNANTMGRAQVRGLLCYGFPFVGLVHISVPESMPSHMHWEVPEISDIAGSNGELIETGEYFIFDPFPLASARRQEGR
VLALGLPVEVGYRVIALTLSNNGERFCGFTIGEARAGARNPVVSHRVLEAVRMLLTTEPHLFEVVHWFNEVGT
>SEQF2266_AEE65575.1 hypothetical protein BPTD_0061 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRALAEQLGRELKQPVIVVNRSGAAGNIGAASVARADNDGYTLLMTSAPFAIAPAIFPDLSFHPIKDFTAITQISMVPL
LVVTRANSPLNSISDLVAAAKQNEDSISFATFGVASPPHLAGQKIQELAGMKMLHIPYKGGSEAITELLSGQVSIGILDV
ISMMPMVKDGKLKALAITGPVRAQALPDVPTLVEAGISYDDVGWFGLFAPAGLSPAITQILNVAVNKILAKPEMQKLVVA
SSTVPITPSTSPGEWQALFNENVRAWGASATEALKEDE
>SEQF2266_AEE65576.1 hypothetical protein BPTD_0062 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARKLLMLVGDYVEDYEVMVPFQAFQALGYQVDAVCPDKAAGDYVMTAVHDFEGAQTYSEKPGHRFTLNASFDQIEMEKY
DGLVIPGGRAPEYLRLNSKLLALVRYFFEAEKPVACICHGIQILSTAGVLEGYKCACYNTCAPEVTAAGGTYVDIPMDEA
ITDRNLVTAFAWPSHPAWIAQFATLLGTKITHN
>SEQF2266_AEE65577.1 putative ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVKACEENEIREGDIVEKKINGLDIILMRNGEQFFAAQAICPHMDEKLCNGLFKKTKLICTKHLWQWDLETGKPLGAAEK
PIQIYKTTVKEGIVYVGVDN
>SEQF2266_AEE65578.1 oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMQQEQRILFKNDVGDYAAVAAGEESVLQAGLRQSVPLNYHCASGSCGSCKARLIQGALKVYTGTDFIQVSHSAGQACEC
PEVHLCQSHAVSDCVFEALYDKNVPPDLAAPKHYAASLNDVRPLGSGLYRLLVDLDDSIRFLPGQYVMLATKAGGRARAY
SVANFAQDSRQLEFILSCNPNGAMSPQLCDINNIGMQLQGYGPLGKAYIRPKKDNELVMLVGGSGVSVALSTLEWAISSH
YIDDRHLTIFWGVRDTSPIDLIGVFNRYAAVHSNLRVAVCSDISPSVQDRGRFPYIEFFTGYPADHIVNDASISWEGKEV
YISGPPPMVDHTIRQLMINTEIDALDIECDSFV
>SEQF2266_AEE65579.1 integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAATSYWVIDYPLMSMGLTSIDSLKNYTFLAVPLFIATGDLLTAGGVSQQLIKFSRAVIRAVPGRTAATSVLASGMFCAI
SGSSAAAAATMGKLMAPEFKRAQIPMRRGGATVAAGGILGGLIPPSTIIIIYSLTVNVSPVELNLAAILPGILILLFIFF
VSIMRTRQYEPASKSTDGYFKEVGTSVLGATPAFIAIALLFVGLYSGLFSPTEAAGVVTIYCAVIGLYWSSQFGIRDIPK
ILMESASVTGIIGPIVVFSIQFQQILSVMEIPDLILVQLVELSSAYGATVTLAVMMGIVLLFGTFMEVIAVILILAPIFA
PIATEIGMNGVHWGMIFIIGASIGFISPPHGLNLFITSMTMKIDYGELMAEIVRMIIPILVAWLIVAAFPYISLVFV
>SEQF2266_AEE65580.1 hypothetical protein BPTD_0067 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHSNHNSMRRSTLRKLTGLGMGTILTAGAGAAAVLAPFNSFAKSEAKAAYRFRFGTIYTPSAAEYTAPGIYDFVERVQR
KSDGEIAIQLIDKAQACSEDQCAQRVMSGILHMGSSTFQNTGATMPYSVALDWPFLWKSRVAYHNFLLSKESNRLYRDVL
RNKYGVVPLYASGSMRNIMMGKKYSEAADITSPDALNGAKIRITNSEMISNFAKSMGMAPIPLAWGELLEGLKSGLVDAT
ETYPSAAAGFGMYSVLSQDIDVQFCPGYSMIFMAAKTFDKLPERLQELIYESAYESMVEAYQTSIIAESTLVGIGPNPSP
DSAYQRGKIRQIKLSHEQHAAFKESGSVENNSQLYANLRKQLDDIAGIDVYGALSEYAKNTSSTELMAEKWWT
>SEQF2266_AEE65581.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE65582.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMKMEEDIKRWTAKRKSALVLDIIQGKTTVAEASRQYDLSPSEVEQWVDDGKRGMENALRANPQDVREQYERQLKDMQE
AYGEAMLELRARKKLQSLLGEDEK
>SEQF2266_AEE65583.1 heat shock protein 90 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQTTTTSASETLGFQAEVKQLLHLMIHSLYSNKEIFLRELVSNASDACDKLRFEAIDQPGLLEGDGELAIRVGYDKAAR
TITISDNGIGLSRDEAVANLGTIARSGTREFFSQLTGDKQKDAQLIGQFGVGFYSSFIVADKVTVLSRRAGLAANEAIRW
ESDGQGEFSIAPAEKAGRGTDVVLHLRADEDELLNGWKLREILRRYSDHISLPIRMAKEDWDAEKGEQVKGDELETVNQA
NALWTRNKSDITDEQYREFYKTVSHDYDDPLAWTHNRVEGRSEYTQLLYVPKHAPFDLWDRDARRGVKLYVKRVFIMDDA
EQLLPSYLRFVRGVIDSADLPLNVSREILQESRDVRAIREGSAKRVLSLLEDMAENKAEDYATFWTEFGQVLKEGTGEDA
ANRERIARLLRFASTHDGEQAQTVSFADYVGRMKDGQDKIYYVTADTFTAAANSPHLEIFRKKGIEVLLLSDRVDEWMLS
YLREFDGKSLVSVAKGGLDLAELADEEEKKRQSEVAETFKPLVERLQQALAEQVKEVRVTQRLVDSPACVVVGQNELSPH
LLRMLKAAGQEAPEVKPVLEINPDHALVARIRDASDAEFGDWAALLLDQALLAEGAQIADPAAFVKRLNGLLLKA
>SEQF2266_AEE65584.1 glutathione S-transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKIWGRLSSVNVQKVMWAVRELALPHTFIEAGGQFGGLDTPEYLRMNPNRKVPLIDDGGFILWESNAIVRYLGARYGEG
AISPADPCVRADADRWMDWQTTEWQPSMLAAFMGLVRTAPEQRDAAAIEASARQAGKIALMLENALAGRDFIAGPQFSMG
DIALGCAAHRWLGLPVERPATPHISAWYRRLMMRPATQGILTLPLT
>SEQF2266_AEE65585.1 N-acetyl-anhydromuranmyl-L-alanine amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRLLLDRHGWLIPGPAVTRAPSPNVNARPAGTQISLLVIHNISLPPSQFGGPYVADLFLNRLDYSADPWLERLRGLHVS
AHFFIRRDGAVIQFAATEARAWHAGVSRFRGRDNCNDFSIGIELEGTDILPYADAQYATLARLAQVLRARYPLADARGHE
HIAPGRKTDPGRAFNWVRFGRESGFPRRNLPPV
>SEQF2266_AEE65586.1 hypothetical protein BPTD_0075 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGKLIFWFVVILAVLFIARLAGARAASKRAPRAEPPRPAQDAASQPMVRCAHCGVHLPRSEAVLLGGQTWCSSDHARRGA
ERG
>SEQF2266_AEE65587.1 hypothetical protein BPTD_0076 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSGIVFHAVAALAYAVLAGSLWRRLQGRGSVDQASKLTRTGLLGALALHGVALQQAMLGTQHLYIGWALALSAAVWLGL
VVFWLESLLIRIDGLQLLLLPAAAIVTAIAALFPQAQLVPHANNPWLRAHLLIALAAYGLITIAALHAMLMALLDRHLHR
PLDAPAERSIVGRVLDAQPPLLVQERLLFRVIWIGFVVLTLAVGSGSVASITLTGKFLPFDHKTIFTLLSWATFGVLLLG
RHICGWRGRVALRWTLTGFAFLILAYTGSRFVLEVILHRG
>SEQF2266_AEE65588.1 signal recognition particle protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDNLTQRLSRVVKTLRGEARLTEANTQEMLREVRMALLEADVALPVVRDFVARVKEKALGEEVAGSLSPGQALVGVVHK
ELTSLMGGDLGEHAGELSLATQPPAVILMAGLQGAGKTTTTGKLARWLSEGQHVQGGRKTGKKKVLVVSADVYRPAAIEQ
LKTVAAQVGVDFLPSDVSQKPEDIARNAIDHARRHHYDVLIVDTAGRLGIDEAMMREIRALHDLVKPIETLFVVDAMQGQ
DAVNTARAFGDALPLTGVVLTKLDGDARGGAALSVRHVTGKPLKFVGVSEKLDGLEPFHPERMAQRVLGMGDIVSLVEQA
QKNIDIAEAQKLASKIKSGNKFDLNDFRDQLDQVKKLGDMGSLLEKLPAQLQQAAGQLQGGQAEKQLRRTEGILNSMTPG
ERAKPELIKASRKRRIAAGAGVPVQEVNRLLSQFEQMQGMMKQMKKGGMAKMMRAMGGMKGLGRFGGMR
>SEQF2266_AEE65589.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65590.1 lipopolysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLPYAIRRLFVDLPRPFKQMLAIVLDAVILLGAFHLALWLRFELFFLTDQYLFLSLLACAGGIAALAAFGVYLYILRYM
SERVLAAILGGIVVSVMVVTAGNTFLQLATISRGVLVLYAALALVGLIGVRLIARKLLFPADHHMADPRTPVLIYGAGGA
GSQLAMALRTGPHYRPVAMLDDDKRKHRLVVNGLRVYPPEQLPKLIDRHNIRQLLIAMPSAPPKQIRSIVEAAEPYRLRI
RLVPSMRELIDPTNGVRLRDVQVEDLLGRDPVAPIDTLLGRCVTDRVVMVTGAGGSIGSELCRQILALRPRKLVLFEIAE
PALYAIEQDLRQRIGERNIEIAGVLGSVRDAAHCLAQLQEHGVQTIYHAAAYKHVPIVEHNVSEGIRTNAFGTLNMAETA
IQAGVLDFVLISTDKAVRPTNVMGASKRLAELILQAHAQIQDKTRFSMVRFGNVLGSSGSVVPLFRRQILEGGPITLTHP
EITRYFMTIPEAAQLVLQAGAMGESGSVFVLDMGEPVLIRELAERMVRLYGLTVKNSDQPDGDIEIRITGLRPGEKLYEE
LLIGEDSRETLHPRIMRATEYSLPYETLMGQLRMLDRSLQMCSPRQAAELLGQIVREYASVTYA
>SEQF2266_AEE65591.1 lipopolysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMTLLPLLVIASYSIIHLLEYLSYYARVAGRMAGKPVTGYAIQNATTTVTRFFYLALMPLLGFLVDKQVPTSLYLQMGLA
AMFGAALLSLLGYWLRYSWIALLTNAVRKRAGQPPLRVEEIRTALEAPASLPKKRIALLAAIVFLCYCLGVLLSYFFALV
FHEYRSTISQLSGLINGVATVLLTFVLEPRIAGIVDARPTHDVYHAIQAMLNGRLIAIGLLAPALFFGVCIGFV
>SEQF2266_AEE65592.1 putative glycosyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSNVPSRQSPDFAQRTPARVALLGPARSIHTIRWANGLALRGLQVHLLSLETPDLSLYDERIVQYRLPWRAPLGYFLAA
PRLRALLKRIDPDLLNVHYATGYGLLARRARFSPVLLSAWGSDIYEFPNSSTWHKALLQRNLDHATALAATSHAMQREMR
GLTRRPIFVTPFGIDEALFQPAQSVQAPAADGPIVIGTVKALETHYGIDTLIQAFALLRQALAASQPGMAERLVLRIYGA
GSQLQRLRAQAQAAHIANQVEFKGRIPHAEVPEALRALDVYVALSRMDSFGVAILEACSCALPVVVSNADGPAEVVVDGK
TGYIVAREDAHAAADRLQELVLNPELRQRLGAAGRARVLSEYTWSKSLDMMLDAYTETARLYRATQPASV
>SEQF2266_AEE65593.1 sugar transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIKRLFDVVCSGLGLLALLPLLALIAIAIKLDSPGPVFFRQERVGKDGVPFRIHKLRSMSVRQDPQAGQITVGADPRITR
VGKWIRKWKLDELVQLIDVFTGSMSLVGPRPEVPRYVVLYPDALRDLVLSVRPGITDPASIRFRNENEILGQSSDPERTY
REIILPEKLRIQAEYVQTRTFLGDLKIIAHTLLAVAR
>SEQF2266_AEE65594.1 lipopolysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPAARLSLLQRSSTMSDFLPFALPDIGEAEIQAVTESMRSGWLTTGPNAREFEREFAAYIGADVEAVAVNSATAGLHLA
LEAIGVGPGDEVITTTHTFTASAEVARYLGAEPVLVDIDPATLCISPAAIERAITPRTRAIVPVHYGGLSCDMDSILEIA
RKHGLKVIEDAAHALPASWQGRRIGSLESDLTVYSFYATKTLATGEGGMVVTRDPALAKRCRVMRLHGIDRDAFDRFTSK
KPAWYYEIVAPGFKYNMTDTAAAMGRVQLQRVQQMRDRRAQIAAAYDQAFADLPLTLPPGPGRTPGVERVAHRDDDEHSW
HLYAIRIHPQAPLKCDDFIVRMTENGIGCSVHYVPLHLQPYWRDRYGLTPDMYPHSQAAFEGMASLPIYSRMTDADVQRV
IASVRQLLRP
>SEQF2266_AEE65595.1 glycosyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNILLINHYAGSPRYGMEFRPYYFGREWIGHGHQVKVAASTISHIRARAPQAGGRLTRENVDGIEYLWYATLPYQGNGAR
RLLNMLQFSARLYGLRRDLGGWRPDIVIASSTHPYDVLPAARLARQTGARLVFEVHDLWPLTPRLLGGFKAWHPMIASMQ
YAEDYAYRHADLTVSMLPCALPYMRERGLDPRRYAHVPNGVPVTEYSSPDFDNPDYLRVRAQIRQLREQCDFVLAYAGTH
GHANALDMLLQAMARLRDQPIGLLLLGDGPDKPELKRLAGQLGLRHIAFADPVPRPAVQAVMADIDAAYIGLRRSPLFQF
GVSPNKLFDYMLSACPVVQSIESGNDIVADARCGLSVPAEDPAALAAALHGLRTLPAAERQAMGRRGRDYVLARHDYPVL
AQQFLDAVQSVTPRRAASR
>SEQF2266_AEE65596.1 UDP-N-acetylglucosamine 2-epimerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPKKILTVLGARPQFIKASVVSAAIAQHPELTEVVVHTGQHFDANMSDVFFDELGMQTPAHQLDIHGGGHGDMTGRMLVA
LEQVMQAEKPDVVLVYGDTNSTLAGALAAVKLHIPVAHVEAGLRSFNLRMPEEVNRILTDRISRWLFTPTDSATRHLAAE
GQSGEKVVQVGDVMYDVALHHGARVTAEGRALAAHGLKPGGYVLATIHRAENTDDAQRLTTIVRALQALAAERQVVWPLH
PRTWGILARLGLLDELASTVTLLEPVGYLDMVQLEKYAALIATDSGGVQKEAFFHRIPCVTLRDETEWTELVDAGWNRLA
PPVSSAVVAQAVQDALREQPRDVQPYGDGQAARRIVDALAAH
>SEQF2266_AEE65597.1 lipopolysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQFIDLKTQYQALRDTINPRIQAVLDHGQFIMGPEVKELEAALCAYTGAKHCITVASGTEALLISLMALGVKAGDEVITT
SFTFVATAEVIALLGAKPVFVDVEPDTCNIKVSEIEAKITPRTKAIIPVSLYGQCGDMDEVNAVAARHGLPVIEDAAQSF
GATYKGRKSCNLSTIGCTSFFPSKPLGCYGDGGALFTNDDELAQAMREIRVHGQSGRYYHARIGVGGRMDTLQCAVVLGK
LERFDWEIAQRIKIGARYQQLLADLPGGACTVTVRPDRDSVWAQFTVMVPNREAVIAQLKEAGIPTAVHYPRPIHAQPAY
EQYAEGAGATPVSDDLAARVMSLPMHPDLDEATQDKIVAALRQALN
>SEQF2266_AEE65598.1 acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTIHPTAIVDEGARIGANSRIWHWVHICGGAEIGAGCSLGQNVFVGNRVRIGDRVKIQNNVSVYDNVFLEDDVFCGPSM
VFTNVYNPRAAIERKNEYRDTLVRQGATLGANCTIVCGATVGRYAFVGAGAVVNKDVPDFALVVGVPARQIGWMSRHGEQ
LDLPLAGNGQARCPHTGDLYILENGVCRLGE
>SEQF2266_AEE65599.1 oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSLPITDRKIRFGLVGCGRISKNHIGAIAQHGDRAELVEICDTNPEALQAAEAATGARPFSSLSDMLAQGNADALVLAT
PSGLHPWQAIEVAQAGRHVVSEKPMATRWEDGKRMVKACDEAGVRLFVVKQNRRNATLQLVKKAIEQGRFGRIYMVTVNV
FWTRPQEYYDAARWRGKWEWDGGAFMNQASHYVDLLDWLVGPVESVYAYTATLARRIEAEDTGVAALRWRHGAMGSINVT
MLTYPQNLEGSITILGEKGTVRVGGVAVNRIDEWKFAEPHPDDDKIREANYETTSVYGFGHPLYYDNVINCLRGDCEPET
DGREGLQSLALLTAIYRSARDGVRIPLPLD
>SEQF2266_AEE65600.1 heptosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNRILIVRTSSLGDLVHMLPAISDIARYVPDTQIDWVAEEAFADIPKWHPAVNEVIKVAHRRWRKAWWSEPVRQERRAL
AERLRSVSYDVVLDMQGLLKSAWLVRQTRGVRHGLDWRSAREPLVSLFYNVRHRVEFWQPAVVRQRKLAALTFGYNYAGS
PDFGLQAFGRAAQADDAPADPGRRMLHLAADRGYAVIMPSASRDDKLWPEDDWRAVFRRLQDAGCALRLLAGNEQEAERA
RVLVAGMEGVEVLPRMDLTSVAQVLAGARLMVGLDSGLTHLSAALGRPTIGIYRASTPVRTPLVGPSYTASLGDRGASPS
REAVLASVEQALAAA
>SEQF2266_AEE65601.1 3-deoxy-D-manno-octulosonic-acid transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRGVYTLALRGLAPLIWLWMWRRARRAGGQWELFAPARFGRAGARAPAPLAAPVWVHAVSLGETRAAQPLVQALLERGL
PVLLTHTTATGRAEGERLFGAAIGRGQLQQAWLPYDFPGATRRFLARHAPRCGLLMEREVWPNLLAAARAQGVPMALVSA
RFSASSLRQAGWLGQALREALAGLDRVLAQTDEDGARLCQAGANAYTVTGSLKFDVALPEAQLRVGHAWAGATGRPVIAL
ASTREGEDAMFIEAIGALQAHRAATPRPLILLIPRHPQRFDEAAAQLQAAGLAYARRSAGSGEPGPHIDVLLGDTLGEMP
FYYAAADVAIVGGSFARLGGQNLIEACAAGTPVIVGPHTFNFKDAARDAIAAGAALRAPDARTALDWALQLLAEPARRQA
MSEAARAWTAAHAGATRRTLDALEDWLG
>SEQF2266_AEE65602.1 hypothetical protein BPTD_0092 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRILFLLIVAANLWVYALGQGWLGLRPADEGRDAARLNQEMKADQVKVLRP
>SEQF2266_AEE65603.1 pantothenate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIILIDSGNSRLKVGWFDPDAPQAAREPAPVAFDNLDLDALGRWLATLPRRPQRALGVNVAGLARGEAIAATLRAGGCDI
RWLRAQPLAMGLRNGYRNPDQLGADRWACMVGVLARQPSVHPPLLVASFGTATTLDTIGPDNVFPGGLILPGPAMMRGAL
AYGTAHLPLADGLVADYPIDTHQAIASGIAAAQAGAIVRQWLAGRQRYGQAPEIYVAGGGWPEVRQEAERLLAVTGAAFG
ATPQPTYLDSPVLDGLAALAAQGAPTA
>SEQF2266_AEE65604.1 putative biotin protein ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGAITIAPMSAEVRSLSLPEPAALARAIAARLPAFRDISWVGSTGSTNADLLARARAGGGARPCLLGAHLQETGRGRAGR
PWQNRVGAALMFSCAFDVDLPPSQLPALSPLAGMAACEALRQLVGQPAGLLVKWPNDVQWHDAKLAGVLVESVRNPAGTG
HAVVIGMGLNLHGGDALSQALQRSVADWNDVAGPGEKGPDAAADLVAAVARAWQDAAHTLQQEGFGAFGARFARVDALAG
RPVNVIDRGEILYTGAASGVDDHGRLLVQAADGMRPVSVGEISIRPQA
>SEQF2266_AEE65605.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSLPSTAGAATLSLTLDHGVCHVSGDWSMQALAAPGEVERRRAALARVDPDQRWDLRGVERLDTIGAHLLWGAWGQQLP
ERVRWSDGQREVFQTLQRNRGEALPAPAPADRWGWLRAIGDAVFDAGRNGRALVIMFGQLVLDLGAFLRRPSRGPWREIS
AQVYRTGAQALGITALVGFLIGVVLSYLSAQQLQMFGADRFIVRLLGVSIVRELGPVLAAILVAGRSGSAITAQIGVMRV
TQELDAMLVMGISHGQRLILPRVIALAITMPLLVVWTDAMALLGGMLAAQMQLGVSAQWFLTSLPDAISLTNYWIGMFKG
VSFGILIALVACHFGLCIQPNTESLGRGTTTSVVTSITGVILVDALYAVIFSSIGI
>SEQF2266_AEE65606.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGSVAQQNLFSATDLAVAPVIAVRGLRTAFGDHVVHDNLDLSVYPGEILALVGGSGTGKTVLLRQIIGLERPAAGTIEVL
GRRVQELEPAERRRLSHRWGMLFQAGALFSSLSVFDNVALPLRELRTVPEDLVCDVVMCRLAMVGLTSKDADKRPADLSG
GMVKRVALARALSLDPELLFLDEPTAGLDPLRSDEFVDLVRSLHRQLGFTVVMVTHDLDTLLALATRVAVLADKRVIVCD
TVREVLKVDHPFIRSFFLGERGRRALGDLAPKETGNGKP
>SEQF2266_AEE65607.1 hypothetical protein BPTD_0098 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDMKKAIIVLSALLLAGCGAGRMAAPPALFDLGADVAATPALPARQPIVLAFEAVPYLSDTGVIWRVGDSASPHAYARSR
WASAPAELVRQRLVERLSHQGPVLGAGMGAGLAQVQVTLTFEQVFAADGQASVGHVAMQAVLLQDRQVVGQVRIAREAPA
ATQDAAGGVQALRQATDAAADELAGWLAGRVAAAGARAGS
>SEQF2266_AEE65608.1 hypothetical protein BPTD_0099 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSARTETQVFTGAAGSIDCAIDWPAHAPRGWALVLHPHSLQGGARDNKVVTTVARACVQHGLAAVRPNFRGVGESAGEFD
KSIGETEDMLALVAQVRERYPEFAASPWVLGGFSFGTAVAAQTYAALAASGDPSLPRALMLMGPAVNRFERSATEVPADT
LLVHGEVDDVVPLAEALEWARPRSLPVVVVPGASHFFHGKLLVLRQLVQDRLRIALD
>SEQF2266_AEE65609.1 putative penicillin-binding protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTLPDTAIAPVVLSRRVLASAVLAAMLAAAAPAGAQQQAAPATPVAAAAPAAGGAVGAVGDLAAVPVPTIAAKAWITVD
VNSGQVLAASNADMKVEPASLTKIMTAYVVFNALQEKRLTLEQQVPVSEHAWRTGGSRMFIEPRKPVTVDELNQGMIVQS
GNDASVALAEAVGGSESAFAALMNQEAQRLGMRNTHFMNSTGLPDPQHVTTARDLATLAAHLISDYPDYYHYYKQKSYTY
NKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLVSTAMRGDRRILTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDQ
SQPGLDARVWEGKVENVKLGPPNPVWLAVPRGKAAEIKPVAQRTDPLVAPLTKGQQVGTLQLTLDGKTLRVEPLVVQEDV
ERAGFFGRMADTVKRWFQ
>SEQF2266_AEE65610.1 class IV aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAPILSKELPMIPGMPGDSQVYLNGEFTRLDEAKISVLDRGFIFGDGIYEVVPVYDGKVFRMTEHLNRLDRSLAALRIA
APMDRAGWESVIAGLIARSAQPTCIIYLQVTRGVCKRDHAFPTEPITPTVFGMAAAFSPPGAAQRTQGLSAIAIDDERWL
HCEIKSVSLLGNVLAKQQAVDAGVDEVVQFRDGWLTEGSSTNIWVVSGGKLLAPPKNNLILEGIRYGLMGELAEAAGLPF
EARRISREEVLAADELMLTSATKEVLPIVRLDGKAVGAGKPGPVYEQLRAGYDARIAAL
>SEQF2266_AEE65611.1 hypothetical protein BPTD_0102 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHNIPPEESLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPGFDPASVEMRPSKGGNYLGLTFTVRATSREQLDSLYRA
LHGHPMVSIVL
>SEQF2266_AEE65612.1 lipoyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIKWLARPADYASVWDAMKTFTAARGPGTADEIWLCEHAPVYTLGQVGRPEHLLNPGLIPVVHCDRGGQVTYHGPGQVLA
YTLFDLRRAGLYVREYVDMLEQATLATLRELGLEQACRKPGAPGIYVPQPGGELAKIAALGVKVRNGYAYHGLALNIDMD
LSPFLGINPCGYEGLRTVDLAACGVRTSVERAGELLAAQLARAHGQAVQQRAAALAGVPG
>SEQF2266_AEE65613.1 lipoyl synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTLVESPVPSNDSQAAAPAAYDPTQKQKSQAKTARIPIKVVAAEKLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVC
EEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDTQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAH
FVECIAKVREYSPDTRIEVLVPDFRGRLDRALHILNSGPPDVMNHNLETVPRLYKQARPGSDYAHSLKLLAEFKKLHPEV
PTKSGLMLGLGETDEEILQVMRDMREHNVDMLTIGQYLQPSEHHLPVLRYVHPDTFAMFEREAYAMGFTHAAVGAMVRSS
YHADQQAHAAGVN
>SEQF2266_AEE65614.1 dTDP-4-dehydrorhamnose 3,5-epimerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLTPLAIADVVLIEPQVFGDERGCFFESFNQDRLDAQLGRRIRFVQDNHSCSRAGVLRGLHYQILHPQAKLVRVVAGEA
YDVAVDLRRGSPTFGRWTGAYLSARNRHQLWIPEGFAHGFLALSDDTECLYKATDYYAPEHERCVRWDDPQLKVDWPLQG
QAPILSVKDRQGVALARADTYA
>SEQF2266_AEE65615.1 dTDP-4-dehydrorhamnose reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNILLLGRTGQIGDALLAHPPAWARLAALDRRQADLRDLGRLAAVLDAYAPRILINAAAYTEVDRAEAEPELALRINAQA
VAVMADYARRNNALLVHYSTDYVFDGKRARAYRETDAAHPLNAYGRSKLAGEQAIAASGCPHLILRTSWVYASHGANFVK
TILRLARTRAELSVVADQHGAPIWAGRIAAVTWQAIDAHRRRRLPDGLWHLSAGGHVSWHGLACHIVARARRAGLALSLD
PAHIRPVTAAQYPLPAPRPANSRLDCGALRDALEPELPDWQVDLDAVVDALAARAHTL
>SEQF2266_AEE65616.1 dTDP-glucose 4,6-dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSILVTGGAGFIGSNFVLGWLASGDEPVINLDLLTYAGNAANLAALRDDPRHLLVHGDIADAPLVRRLLREHRPRAIVNF
AAESHVDRAIRAPDAFVQTNVVGTFTLLEAARAYCTEQDAAAAAAFRFLHVSTDEVYGSLAPQAAPFTETHPYQPNNPYS
ASKAASDHMVRSYRHTYGLPAITTHCCNNYGPRQFPEKLIPLVIHHALAGRALPLYGDGMHVRDWLYVVDHCAALECVLR
DGQPGQTYNIGAHCERTNLEVVHAVCALLDQWRARPDGQPHAGGIAFIPERPGHDRRYAIDAGKIQRELGWRAATSFEAG
LRETVRWYLDHPQWVADIASGAYRHWLDTHYGT
>SEQF2266_AEE65617.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHN
>SEQF2266_AEE65618.1 cystathionine beta-lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDESRHIDTLLQHLGTAPFDPDTGAAPVNLPSMRASTVRFRDLAALEQAQRRKAGGDRAVTYGRMGMDTHAALEHVFKE
LEAGTHCYLASSGMGAVTMAFLSLLSAGEHALVADCVYGPVYELDNAVLKRMGIELTFFAPGDDLQALVRPNTRLLYVES
PGSLLFQMLDLPALAEFARRNQLVLATDNTWGSGYIYRPLELGAQVSVIAGTKYVGGHSDLMLGAVVTNDEAVAQRLNRT
QYAMGYSVSADDAWLALRGVRTLPIRMAQHARHAQRVCEFLQGRPEVARIYHPAWPQDPGHALWLRDCSGSNGMLTVELR
LSQPAARVFVESLQLFDIGFSWGGFESLVQLVTPGELARHRYWQGGGNALVRLHIGLESPEDVIADLTQALARAASA
>SEQF2266_AEE65619.1 thiol:disulfide interchange protein DsbA precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQSTTFTRLLAAAALGATTLFAPATQAQGAQQYVNINPPMPSDTPGKIEVLEFFAYTCPHCAAIEPMVEDWAKTAPQDVV
LKQVPIAFNAGMKPLQQLYYTLQALERPDLHPKVFTAIHTERKRLFDKKAMGEWAASQGVDRAKFDSVFDSFSVQTQVQH
ASQLAEAAHIDGTPAFAVGGRYMTSPVLAGNDYAGALKVVDQLIVQSRK
>SEQF2266_AEE65620.1 hypothetical protein BPTD_0112 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATKRKSTRRSKERGSTMYGVLAGLLIGLIVAAAVAFYVTKAPMPFVDRATRQPDQGKLPDPRNAPDPNQGLYGRDGAAG
TPPTGPTATAPSPLPGVTPGAPSRQPDDLGALIATLPNLDRAPAPAATPAPAAKSAKPAAPAASATPAAPASGTYFLQAG
AYRVLEDAEALRARIILLGLPVVMQRAEVNGVQVNRVRVGPFGRLDDMNRARSRLGENDIKSAVVRQ
>SEQF2266_AEE65621.1 arginyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGHLRQTPGRPPGGSARPAARQTCRRHLPFCRLPMLLEQQKQLISLIQAAVAQCLPEAQAQVQLERPKVAAHGDIATNV
AMQLAKPARRNPRELAQGIVDALMAQPQARELIQDAEIAGPGFINFRLTPAARQAVVQAVASQADAYGRAPRNGEKVLVE
FVSANPTGPLHVGHARQAALGDAICRLYDASGWDVTREFYYNDAGNQIDNLAISVQARGRGIAPDAPDYPADGYKGDYIV
EIARDFAARKSVQASDGQPVTATGDLDSLDDIRAFAVAYLRREQDLDLQAFGLAFDNYFLESSLYASGRVQETVDTLVAK
GHTYEEGGALWLRTTELGTGDDKDRVMRKSEGGYTYFVPDVAYHKVKWERGFHHAVNIQGSDHHGTVARVRAGLQGLAGI
PKDFPAYVLHKMVKVMRGGEEVKISKRAGSYVTMRDLIDWVGRDAVRYFLIQRRADTEFVFDIDLALSKSDENPVYYIQY
AHARICTMIGNSGASAAEIAQADTALLTAPSEYALLQRLAEFPQVVALAAQELAPHHVAFWLRDCASDFHAWYNAERVLV
DEPALKLARLRLAATTRQVLANGLALLGVSAPDRM
>SEQF2266_AEE65622.1 hypothetical protein BPTD_0114 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYEIIRMGVRNMLITFHSKVAAEVLMRTDDAAPLLRAAGKSFRDAIPERGVFTADQLQSAITGLERAIAAADRSPPDDDE
PHPDKEPVHPIELAVGLHQRAFPLLDMMRKTAAAGADLTWEVSRGW
>SEQF2266_AEE65623.1 hypothetical protein BPTD_0115 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRDAPAPPPGDPSMRSEVTVVFDARRTVDLSVDVEPSVQAAAAARDWFDSAWEMLGCEPLRPSGKVLLLDKILGVADAL
GYDTLSGDAKESREFAEQAALALGKARIVVDLPGLMVGH
>SEQF2266_AEE65624.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE65625.1 inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRTLDTLGAWLLGLLWILPLAYAAWAAFHPPAYATRFDLLAPLTLENFARAWNAAPFPRYFLNTFLLVTMVLAAQLVLS
TLAGYAFARFEFRGRDFVFMLVLLQLMVMPDVLLVENYRSMSLLGVRDTVFAVGLPYFASAFGIFLLRQTFKTVPRELEE
AARVEGASPWQVLMKVYVPLARPIYVAYGLVSVSHHWNNFLWPLIITNSVESRPLTVGLQVFSSTDQGIDWSVITAATLL
SAAPLLVGFLLFQRQFVQSFMRAGIR
>SEQF2266_AEE65626.1 inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRTTQAVYGWLLLLPAVVLLAAFTHYPALATLWHSFFSTPKGSRPARFVGLENYALLRDDPVFWQSLWNNLWFALGTIP
TSIAIALAMALWVNGKLHGRGFLRMAYFTPTVLPMVAVANIWLFFYTPQYGLIAQVMQWFGLAGPNWLGSRDTALPALMM
VTVWKESGFFMIFYLAALQTVSPSLREAAMLEGASRWQYFRRVLWPLLMPTTLFVLVNALINAFRLVDHVVVMTRGGPDN
ASTLLLFYIYQVGFSFWDTAYAATLTVVLLAVLAATALIKFRWLDRRTHYQ
>SEQF2266_AEE65627.1 extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRIVLKTLAAGLAGAFLALPAQAQQPVEVEFYYPVAVGGPITKIVDDMVADFHKENPDIRIKPIYAGTYQDSIAKALTA
LKGGTPPQLAVLLSTDMFTLIDEDAIVPVDGLAKSDADKKWLGGFYDAFMQNSRTGGHVWGVPFQRSTIVMYYNKDLFKE
AGLDPERAPATWDELVEYGKKLTKKDANGNVSQWGIKIPSGGAFAYWLFQALTTPNDAILMNEEGSQVYLDKPAVVEAAQ
FWQDLSVKHGVMPKGTIDWGTTPKDFLEKKAAIVWTTTGNLTNIRKNADFPFGVAMMPKKKRGGSPTGGGNFYIFKSGTP
AQQQAALKFAQWATTPERAADWSIATGYVAVTPAAWQTERMKKYAQEVPAATMARDQLEVSVAEFSTHENQRVTKVLNDA
LQAALTGSKTPQQALTDAQREADRVLRSYK
>SEQF2266_AEE65628.1 sugar ABC transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHLVLDDLTKQYGEAAAISGVSFTAPAGSFTVLLGPSGCGKSTTLRMIAGLDTPTSGRIRIGDRDVTDLPPAKRRISMV
FQSYALFPHLSVRENILFGLKVRKEPARDYERRLARVAGLLGLQALLDRKPAQLSGGQQQRVALGRAVISEAPVCLMDEP
LSNLDAQLRHDMRREIRALQQELGITMVYVTHDQTEAMSMADQVVLMRGGRIEQLDTPDGLYARPATEFAARFIGTPPMN
LIALDTHDGRPVVAGTQGPALANAPAGAVTLGLRPEHIRIDADGMPAVIESVEYFGADSVAVCRLGSCGGVAVRVNGHLR
SAPGTAVGLAWPDERQHFFAADAAVL
>SEQF2266_AEE65629.1 putative cAMP phosphodiesterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIAQISDLHIRMPGQKAYRVVETDRYLPPAVAALNRLEPAPDLVIVSGDLTDFGRPQEYAHLKQMLDALRVPYHVLPGN
HDDRVQLAATFADHPYLREAGEFVQYTIEDQPLRFIVLDTVVPQQSHGALCERRLQWLAQRLAEQPGRPTVIVMHHPPFR
TGIAHMDAIGLLAGAPELEALVARHSNVERIMCGHLHRTIFQRFGGTIASTCPSPAHQVALDLRPDGPSAFVMEPPGFHL
HEWRDGALVTHHAYIESYPGPYPFHEGGELIDE
>SEQF2266_AEE65630.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65631.1 ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MREAGMSAMYSKTDARLGLTVTLAVAAFLIGPVVLSVLAGLTRNYFVGLESGLTLRWVIEVWDLYADTIWRSFAVALLTL
LVCTLTGVPAAWVLTLHHGRMARALEELLTLPVAVPGLASALALIVSWGTVSGLRGSIWFIVIGHVLFTLPFMVRATRAS
MAGADLATLDEAAATLGASRLRRFLTVVVPNAAPGIVTGALTVLTLSIGEFNLTWLLHTPLTKTLPVGLADSYASMRLEI
ASAYTLVFLLMLMPLLVGLQWLAARGERNAANAPITNEKTAT
>SEQF2266_AEE65632.1 periplasmic solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRIIQAALRGTLLALAIGAGAAQAQNAICYNCPPEWADWATQLKAIKEATGITVPGDNKNSGQALASIAAEKANPVADV
VYYGVTFGIQADKDGLVQSYKPAHWDAIPDGMKDPDGKWFAIHSGTLGFMVNVDALRGKPVPKSWADLQKPEYRGMVGYL
DPASAFVGYVGAVALNRALGGTLDNFDPAIDWFKKMRANRPIVPKQTAYARVLSGEIPILIDYDFNAYRAKYKDEANVDF
VIPAEGTIAVPYVMSLVANAPHADNGRKVLDFTLSERGQAIWANAFLRPVRAEAISAEAQKKFLPASEYARAGTVDYVKM
SVAQRGFSERYAKEVN
>SEQF2266_AEE65633.1 amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLNRISASEAARLLNRRDLTAEQLARACLARIEQREPEVQAWTALRPDAVLAAARELDRGPIRGVLHGLPLGVKDMFDT
ADLPTAYGSGIYQSHQPRADAAAVALCRDAGALVLGKTATTEFATYHPGPTRNPRNTAYTPGGSSSGSAAAVADDMVPLA
LGTQTAGSVIRPAAYCGVVGYKPSFGRISRAGLKSLAETLDTVGMFARSVDDVALLASALMRDARLRELRYDGTPRVAMF
RSPQWRHTLPETRPAFERAARALSQAGAVVEELAPPPNEDCGLAQLHSDVMAYEAAQALAFERIHYPSQLSTKLAAMLEA
GAALTAEQYLAHLAQAGQARAKVAEWLQRYDVLLAPSATGDPLFCRAWTLFGVPCVHLPFAQGPQGLPVGLQVVGGFRDD
QRLLAIARWMNGVLAAD
>SEQF2266_AEE65634.1 2-isopropylmalate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMLANPATKYVPFQPFARDFAERTWPSRRITQPPIWMSTDLRDGNQSLIEPMSVERKVRFFEQLVKIGFKEIEVGFPSAS
QTDFDFVRKLIDEKRIPDDVTIIVLTQSREDLISRTVEAAAGARQAMIHLYNACAPAFRKIVFNMSRDEIKNIAVTGTRM
VKQYMAKYPQTQWRYEYSPEVFSTTEPEFALDVSNAVADEWDATPQRKMVLNLPATIEATSPNMYADQIEWMHKNLARRD
SIVLSVHPHNDRGTAVAAAEFAVMAGADRIEGCLFGSGERTGNVDLVTLALNLYTQGVHPGLDFSDIDEVRRCAEYCNQL
PVHPRHPYAGDLVFTAFSGSHQDAIKKGFAQQQADAPWEVPYLPIDPADLGRSYDAVIRVNSQSGKGGVSYLLEQEHGLV
LPRRLQIEFSRAIQRVTDETGREVSSDDVYTIFDSEYLAQQQPWQLVRHRIDGDPSAGEGKHFSIEAELSFNGERRIVKG
SGDGAISAFVAALDVPVRIMDYHEHAIGTDTRAACYVEVRVGDSPTGFGVGIDRDIVTASFKAVLGAVNRHHVAATQATE
TEAVAA
>SEQF2266_AEE65635.1 hypothetical protein BPTD_0130 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMNPTSPERIRQDGRLIGQALLKLALPRLIFRVVVVAIAAVIWLLVAAWLLAFGKSLSFEGMHALGQQAVDMLTRVNPYF
WWGVVAIWSLIVFFSIRAWLGSSIAAGRAAVVPTDVLSDLAPRLSPEVLDVLRWVWGEREEPLTVGDLQRAHTELRHNHI
GKIALVREQSGILDAPAHRPGPDERHCAARHAEPRITEPRAVEPRLAEPHIGPAR
>SEQF2266_AEE65636.1 RNA polymerase sigma-54 factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRPALELRPGQHLTLTPQLQQSIRLLQLSSLELEAELSQALAENPLLERDEDPAREEQADPEREASVEADEAPDTELRL
DEMPGSGGVLPDDDSDLPQAARPDTLREHLLGQLALTRAAPRDAALCGLLIDELDENGYLDSPLEEILTWLPAEVQADLD
ELRAALALLQSFDPAGIGARDMAECLQLQLRQPDPARLPEAADAEVLACARRICAQHLPLLATGNVARVREAVQCDEAVV
RAAHALIPRLEPRPGRAWTVPAADYAIPDVIVRRTRQGWQAVLNSAVVPRLHVNAVYAQVLGGQRQGGNAGLQAQLQQAR
WMIRNVEQRFDTILRVAQAIVAHQQAFFTQGPAAMRPLILKDIAGELDLHESTISRATTQKYMLTPFGTLELKRFFGAGV
STDGGDATSATAVQAVIRQMVADEDRAKPLSDSQIMQRLADQGIVIARRTVAKYREALRIAPATLRKAHAAGR
>SEQF2266_AEE65637.1 putative bacterioferritin-associated ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIIVLMYICICNAVTERQVRACVDAGAATLGDLQFELGVATCCGCCAATATEYLPGGRASSVCEVRSVAVPVNPPAALE
PVGTPQPAANGFPIPLVAVA
>SEQF2266_AEE65638.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNSLFGSKVFEKPMHFPERTAVDLDLLHSFVSVVDAGGFTRAGERVHRTQSTVSQQIRKLEDALGCALFIREGRGVRLT
EDGERLLGYARRMLALSNEIREVVSGERRLEVVRLGLPDDLAVTRLTHMVADFARRHPQVRLSMRCDLSANLHRAQARGE
LDLVLLKREPGAGPSRAAWPERLHWLCAAGGPATLPDPIALVAFPQGCQYRNRAIHALESAGRRWRIAYESPNLSGLQAA
VEGGLGVALLEQRCQTPAMARCDALLPRPAPSELALCMSDTGSRAVHELARLIMDFCGDDKLRQAA
>SEQF2266_AEE65639.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65640.1 threonine dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTDYLKRILTSKVYDVAVESPLERAPLLSQRIANNVLLKREDTQAVFSFKLRGAYNKMANLTPAARSRGVIAASAGNHA
QGVALAATRLGCRAVIVMPTTSPQVKVDAVRRLGGEVVLAGDSFTDAYEHAQQLEKREKLTFVHPFDDPDVIAGQGTIGM
EILRQHPGEIEAIFVAIGGGGLIAGVAAYIKQLRPEIKIIGVQTEDSDAMVRSVRAGRRVQLSDVGLFSDGTAVKLVGAE
TFRLARQYVDDFVVVNTDAICAAIKDVFQDTRSVLEPAGAMAVAGAKQYAAEHKLKGKTLVAVACGANMNFDRLRFVAER
AEVGEMREAVFAVTMPEQRGSFRRFCELVGNRSVTEFNYRISDAERAHVFVGVQVSTPAEPEKIAANFRRHGFDTLDLTH
DELAKTHLRHMVGGHSALARNELLYRFEFPERPGALMRFLNAMNPDWNISLFHYRNQGADYGNILIGIQVPPTDKKLFKT
FVAELGYPHWNETDNPAYRLFL
>SEQF2266_AEE65641.1 iron-sulfur binding oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MREIPYNYTSFSDREIVSRLLGEDAWQLVSDLRGERRTGRSARMLYEVLGDIWVVRRNPYLQDDLLDNPKRRKLLIEALH
HRLGEIDKRREPAAVTEAGHDPRRDAKVVELLARARSAVAAFEGQFDQTAQLRRQAQRVLGRITARDNIKFDGLSRVSHV
TDATDWRVEYPFVVLTPDAEDEIAALVRACIELGLTIVPRGGGTGYTGGAIPLTWKSAVINTEKFEALGEVESCVLPGMT
EPAAVIRAGAGVVTKRVAEAAERAGFVFAVDPTSAEASCVGGNIAMNAGGKKAVLWGTALDNLAWWRMVDPDGNWLEVTR
LAHNLGKIHDVDVASFELKWFDGAGKPGEKLLRTERLDIEGRKFRKAGLGKDVTDKFLAGLPGVQKEGCDGLITSARWVL
HRMPRHTRTVCMEFFGQARDAIPSIVEVKGYLDGEGKARGAILAGLEHLDERYLRAVGYATKSKRGMLPKMVLIGDIVGD
DEDAVATAASEVVRLANTRHGEGFVAVSAEARKKFWLDRSRTAAIARHTNAFKINEDVVIPLDRMGEYTDHIERINIELS
TRNKLRLLDELDAYLAEPLPMGKVEDAEDVALTRAEVLAERTRQAIEHLARTRRRWQWLLDNLDLPLAQALPELDGLDMA
AQREALAERVQAQPQARVFDVVQDHTVRISWKTEVLPALQGVFSGNAGKLILEGLVAVHARVLKSRVFVALHMHAGDGNV
HTNIPVNSDDYGMLREANQAVERIMQIARDLDGVISGEHGIGLTKYEFLTEAELAPFQEYKRRVDPNGHFNAGKLMPGAD
LRHAWTPSFNLMGHESLIMQQSDIGAIADSVKDCLRCGKCKPVCSTHVPRANLLYSPRNKILATSLLVEAFLYEEQTRRG
ISLKHWEEFEDVADHCTVCHKCYTPCPVDIDFGDVSMNMRALLRRMGRKSFNPGTAAAMFFLNAKDPAAINATRKAMVGV
GYKVQRAAHDLLASVSRKQAAHPPATVGRAPLREQVVHFVNRKMPGGLPKQTARKLLDIEDANYVPIIRDPKTTTADTEA
VFYFPGCGSERLFSQVGLATQAMLWHAGVQTVLPPGYLCCGYPQRGNGMTDKAEQIITDNRVLFHRVSNTLNYLDIKTVV
VSCGTCYDQLAGYEFEKIFPGCRLIDIHEYLLEKGIKLDGVQGVRYMYHDPCHTPMKLQDPMKTVRSLVGEGAQKSDRCC
GESGTLAVSRPDVSTQVRFRKQEELDQGQAAMRADGFSGDVKVLTSCPSCLQGLSRYEGETGMDADYIVVEMARHILGET
WMEDYVRRANTGGIEHVLV
>SEQF2266_AEE65642.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRYLCFNVYLVLSYICKLRRPAAKEFILDVKAPATIPYFLKEQIRELIVDGTFRPGQPLREQDLEQRFGTSRSPIREALR
LLERGGLVVHLQRKGFRIRRYSQTEIRQVYMLYAELEAYSIMQLSEAADSPLLDDLRRHEARIAQAQADADVRGYIGALR
DFYLASARFTGNVPLADTLSRLYEQVEPLRYNLVRRTLAATPADQYHRGIVPALAQRDLAGAARQAHVLVREMLPRILSA
YEQWAGDAGDEPGDDRLRVA
>SEQF2266_AEE65643.1 hypothetical protein BPTD_0141 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQALEHIKVVDLTRVLAGPWATQILADMGARVIKIERPGAGDDLRGWGPPFLKNAHGEETTDAAYFLSTNRGKESVTLD
ISSAEGQEIVRQLAKDADVLVENYKVGTLARFGLDYESLRKINPRLVYCSVTGFGQTGPHAHLPGYDYIFQGMGGLMSIT
GLPDAEPGGGPLKTGIPITDVVTGIYASTAILGALEHRNLSGEGQAIDISLLDCLVNVTGCAVMNYFLSGRIPQRLGNTH
SNMVPYQVFRCKEGDVIVAVGNDTQFVTFAGLIGMPQLATDSRFSTMAQRSRNRETLIPIIAQAMQARTMQEWVSLLEAA
NVPCGPINNLQQVFEDPQVQHRGLKLSLPHGSGVDAPGVASPIRYSATPIAYGRAAPCLGEHTDDVLQSELGMAPAAIGA
LRARGIV
>SEQF2266_AEE65644.1 putative lipase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASAQLATLSAQVRQLYAGWDPNTDIARIRRDWDAFFGAVRLPARVTPVDAGGVPCHWIEAPASTRDRVVVFIHGGGYQI
GSHRSHHNLMARLSAWSGRAVLSIGYRLAPQARCPAALEDVDAAHAWLAGQGWSARQTALCGDSAGGALAVLLLARLRAR
GAALPAACAVMSPWIDLQARGESYTANAASDPIANRATVLRMARAYLGRDGDPEAPAVSAQHADLRGLPPLLVQAGSAEA
LLDDARALAARAAASGVAVRLSVWQDMPHVFQLFAARLDAADAAIAELADFINHPLRAPTGAEPRHETST
>SEQF2266_AEE65645.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKSDSFELIEYQAADGIARIAHNRPQARNAESQGLLEELDQALGLAVRDASVKAIVISGKGDHFSAGHDLKEAAAKRSN
FTVEQRWEFEQRYYLGYAMHIYDCPKPTIAQVSGACIAGGFMVANMCDLIVASDDAFFSDPVCQTLATAAVEVMIHPWVM
GARKAKEFLFLGERMSAREALAIGMVNKVVARAELQAETERMAQRIAACDPFALRLVKRSINRGLEMQGLRSAIDAHFDT
HQLSHLSEGFNRARAQGLGNAIQAAAAGSR
>SEQF2266_AEE65646.1 hypothetical protein BPTD_0145 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPFSLLRRIATIALLMAASSAHADTFPSRPIRLIVPFGPGGITDLIARQAALGMAEKLGQPVIIENKPSAGHIVAMQTV
AQATPDGYTILLGSNTGFTVAPHMYKNLPFRIDTLQPIAPINTAPTVLLARPDFPANNLTELIQYIKDNPGKLNYGSFGI
GTSAHLGMEIMKSDLGLNIMHIPYRGDAQGLLALKAKEVDIAYITLFSAQARIRAGEFKALGVLQNDRLTAFPDIQTTVE
VGSKNSGMPVWIAFFAPPGTPDAVMRKLESATRSASTAPAFVEFLHNNGVEPWNPSNQDLMRFIQDQLNRSGPIIQEIGL
QPQ
>SEQF2266_AEE65647.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPKASRPARDRQFASTLAHGLQLLRCFTPEAAVLSNRQLSELSGLSKPTVSRYTYTLIELGYLKVDPVSGKFQLGNAV
LTLSYPLLANIALRQVVRSPMRELAERLGCSVSLCMRERLSMVYVETSRSRSLRAQRYSDIGMSHPIIATSNGRAYLAAC
SADERNTLFNQIRVKTPEHWERWGESALDMIQFWGRHGFCYSHGEYRPDVATVGVPYRPSSGGELYVFNCVLGSQFVKPG
QLENEVGPALLEMTSVLPYA
>SEQF2266_AEE65648.1 hypothetical protein BPTD_0148 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLAVIKPGMLSTFQDGGRHGYQHQGIPVAGAMDPRAHRLANLLAGNAADTATLEITVAGPTLRFEAPACVALGGADLGA
TLGGLPAPVLRPLVARAGDVLSFARPGQGARAYLAVHGGYDLPMVMGNQSTYLRSAFGGYHGRALAKGDQVGLRRPLADD
AARLDALTQQLWQLRFYLAATLSSPPRDVLRILPGPHWAAFDAASRQALLDQAFRIGAQSDRMGYRLEGPRLRLSEPREM
LSEATCFGTVQVPADGAPIVLMADRQTTGGYPKLAQAMPGQALRFALIELAQAQRLDAAREAAFAQLTGQLDALRGLLRD
FQEPTP
>SEQF2266_AEE65649.1 hypothetical protein BPTD_0149 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTASPSPPSSAPAGWRILPQGDRCLIVWFGAQIDAGVGRACLAAAGLLRAAGLAGVTDVVPSFAAVAVHYRPGPDGAPDY
ATLAAQVERLLAGGIPVDDSAGREMEIPVCYGGEHGPDLEEAARAAGLTPEALVALHGAPGSMVYMLGFAPGHSYIGVHD
ARLDLPRRATPRTAVPAGSVAIANRQTVIYPARLPGGWNIIGATPLNLFDPGREPAALLQPGDRIRFVPIDAAEFDRLRE
AQ
>SEQF2266_AEE65650.1 dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTPSPIPPFHLAFPVRDLAEARDFYGALLGCPEGRSSPEWIDFNFYGHQIVAHLAPQACGSAATNAVDAHNVPVRHFGA
VLSMDQWEALAGKLTDAGTEFVIEPYIRFKGEVGEQATMFFLDPSGNALEFKAFKNIESLFAK
>SEQF2266_AEE65651.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIREFKTFIAVARGGTFTGAGRRLGLTQSAVSAQIKRLEEHLGVALFERTGKSAALNHHGRSLLPQAEVLVAMADRVVGM
AGAGRISGLLRVGAIASVQQDLLVRALAALRAEHPDVRVRIVPGVSLTLLGHVDAGEVDLAVLIRPPFALPPELEWQPLL
HEPMVLAVPEAAPEGPWRELLAGQPFIRYDRASFGGRLVDMFLKRHRLDVREAIELDEIDAIANLVRHGLGVALLPHTRH
LDARGLRLLELDDQVRFAREIGLIVRQPLGQSPLAQRLAQCLRAAVSFGEA
>SEQF2266_AEE65652.1 D-3-phosphoglycerate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLYRQPNMAQIVLFENIHPSARAVFSAAGYTDIVAHAAALPSGELREALRGAEVVGIRSRTHLDADLLAANPDLRVVGCF
CIGTNQVDLDAAMMRGVPVFNAPFSNTRSVAELVLGEAILLLRRIPEKNARVHLGHWDKSAAGAYEARGKTLGIVGYGNI
GSQISTLAEAIGMRVVFFDVEAKLPLGNARAAGSLAELLEQADVVTLHVPGGKSTQNIVNADTLARMKRGAILINASRGT
VVDIQALHDALASGHLAGAALDVFPTEPKSADEPLASPLIGMPNVVLTPHIGGSTQESQENIGREVAEKLVRFLQAGTTK
SAVNFPELSYQAPVGGSRIIHVHRNAPGALGALDNLMAQHGLNIVSQSLQTKGQIGYAVTDVDGEVSDTVLADLRSHPVT
VRCEKL
>SEQF2266_AEE65653.1 hypothetical protein BPTD_0153 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHVSTLRRALLGALLLAPAAALANTPIPIDVWRTPTCGCCEDWLQHLRSNGFEVRAHMVEDTAPVRSQAGMPARYGSCH
TARVQGYTVEGHVPAADIRRLLRDKPRAVGLTAPGMPIGSPGMDGPAYGGRRDAYDVLLVQPDGSVRVFQAYR
>SEQF2266_AEE65654.1 two-component sensor kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLRTPSMQRRLTLWLGVIALLASSLAGALLFWTLKQEVQRQEITEARGKAELIEHLVGMQSHTSRALSDMLDGIQAGHG
HLGIWITSPDGTLRYGNATPEVLSVTDDDEVLLRNADDTRMRGVRLTLPGPPEAGATLTVAVNTLANARFLYAYGTALLL
ICALWIGATVVLAAWAVRRTLAPVRRLSGQAASIQPEHLDVRLPVVGIDRELSDLVASFNRTLDRLQEAYQKMEGFNADV
AHELRTPLATLINGAQVTLSSPRSAEELREALTSNLEELEDLKTLVNDMLFLARADRGEQAADLAPARLEQEALRVAEYF
EATLEAQALHVAVQGSATCAANPGLVRRALANLLANAIRATPRGATITVRCAALPDGAARLTVHNPGPPIPAADLPRIFD
RFFRSGGARPPRGEGHGLGLAIVRAIARMHNGGVTAASGPAGTEIGFSLGARPAQDDKRVIRATD
>SEQF2266_AEE65655.1 two-component response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCILVIEDEPKLADYLHKGLSEQSHIVDVARDGVNGRHLALEGDYELVILDVMLPDIDGFAVLAALRAAARNTPVLMLTA
RDRVEDRVRGLEGGADDYLVKPFAFSELLARVHALQRRGRSQESTLLRLADLELDLASRKAQRGGRRLDLTAKEFSLLAL
LLRRQGQILSRTTLAEQVWDMNFDSDTNVIDVAIRRLRGKLDDPYDAKLLHTVRGMGYVLESRPS
>SEQF2266_AEE65656.1 phosphate regulon sensor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIWLRTLFMIAFWAVMALLAQWLIGDPAGWLLFGAATAAMLLWRSWRLHLVSRWAHDPESAPPAAVGPWDDILAPLYRYT
RARARELAETRETMQSMLAAAQALPDGVVTLNEDFQIDWANRMARRHLGLRLPADRGHNLLNLLRAPEFVAYAHRGHWPE
PILVRLSLNGQERVMMIHLAGYASNQRLLISRDVTQIERLETTRRDFVANVSHELRTPLTVLAGFLETLRELPAEALPAE
QRDQYMAMMHEQARRMQAIVEDLLTLSTLESSPEADPLAVDVGALLRTARQQVEALSNGRHVFEWQIEEGLDVLGSGTEL
ASALSNLLTNAVRYTPDGGRIIVRWRRGADGEALYSVQDTGIGIPARHLPRLTERFYRVDRGRSRAAGGTGLGLAITKHI
AMRHDADLLIDSELGKGSTFTLRFPAERVTGEDPDR
>SEQF2266_AEE65657.1 phosphate regulon transcriptional regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSTILVVEDEPAIQELIAVNLSFAGHKVLRAFDAEQAQTLIRAELPDLILLDWMLPGASGLSLARKLRDEERTRAVPVI
MLTAKGAEQDKVDGLEAGADDYITKPFSPKELMARIKAVLRRRAPQLTDDIIDVAGLKLDPVTHRLSGHSQSLSIGPTEF
RLLHFFMTHPERVFSRSQLLDQVWGDHVFVEERTVDVHIRRLRKALEPSGHDAHVETVRGSGYRFTAQVPAR
>SEQF2266_AEE65658.1 ubiquinone/menaquinone biosynthesis methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTPHSQPESAPQGEQSTHFGFQSVPEADKARKVAEVFHSVASRYDVMNDLMSAGLHRVWKAFTIGRAAVRPGMKVLDIA
GGTGDLARAFAKRAGPSGEVWLTDINESMLRVGRDRLTDSGLLVPTAVCDAERLPFPSQYFDRVSVAFGLRNMTHKDRAL
AEMTRVLKPGGKLLVLEFSRVAKPLAPAYDWYSFNVLPWMGKKVANDEASYRYLAESIRMHPDQETLAGMLRDAGLDRVQ
YFNLTAGVAALHEGVRLG
>SEQF2266_AEE65659.1 hypothetical protein BPTD_0159 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRSRFSRFCAMALVAVAGTAMVGASFDAEARRMGGGSSFGRQSTNITQQRQAVTPPAAGAGSTAGATSAARPATAAAGT
AAAGTAAKSGMSRWLGPIAGIAAGLGLAALLSHLGLSGAFAEFMASMLLIALVVFAVIFIVRRLRGGAPRQAMQGAYGAA
GGNRPGQPSQQPMWRESLNPAPAQQPAAAPAAAAAALPKAGDDGNWFIPGDFDTPRFLQQAKDQFVRIQGIWDSGEVESL
RDFLTDDLISELKPQLEARGAAANKTEVVLLNAELLGIETVSDGHLASVRFSGMLREAPGTEAFRFEEVWNLFKPADGGW
LLAGIQQIPVEHAS
>SEQF2266_AEE65660.1 hypothetical protein BPTD_0160 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLLLRTPRGWSAPVDSMLPFAALPTLPRIAARALNALLERESWARDRLARHAGKTVRFALGGFALSLTIDSEGRVQEAD
SAVVPNVTLSAAESSSLARLLPGDGRADFADLTHISGDAALAQVVADLARDLRWDAEDELARVVGDIPAARLLGGARALA
GGAREAGGRLARNVSEYLAEESAVLVGRPQWEQWRLDLARFGADSDALARSAAALEARLARLDARRGA
>SEQF2266_AEE65661.1 putative ubiquinone biosynthesis protein UbiB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAMLTFLRLLRILLVSLRYGLDELVLSSLNHPLATCLLRIMRLGTRPRAPRGARLRMALESLGPIFVKFGQVLSTRRDL
IPADIANELALLQDRVPPFPSAQAAACIEAALGAPPAQLFAQFDVDPVASASIAQVHFAVLHDGREVAVKVLRPGMLNVI
EKDLALLRVVAGVIERLGADGRRLKPREVVAEFDKYLHDELDLVREASNCSQLRRNFGPESGRGEMLIVPEVVWEYTAST
VFTMQRMYGIPVGQVDRLRAAGIDIPTLARSGVEIFFTQVFTDGFFHADMHPGNIYVSDAPQTLGRYIALDFGIVGSLSE
FDKNYLAQNFLAFFHRDYRRVAQLHIESGWVPPETREEELEGAVRAVCEPYFDRPLAEISLGQVLLRLFQTSRRFNVEIQ
PQLVLLQKTLLNVEGLGRQLDPNLDLWKTAKPYLEHWMRQRIGLTGLRQSLAKEAGQWSQMLPSLPRLVHEHFSRPNLTP
HLLAEMNRLRRAQEQGNRLTAALTAVLAVAVAVALWALSR
>SEQF2266_AEE65662.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE65663.1 hypothetical protein BPTD_0165 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHVRPSNAWRFLRTLWLGAWLAGWALLAQAQQLAPVPEFGARVVDQSGVLDAAQRQRLEAQLAALEQRKGAQVAVLIVP
STAPETIEQYATRAFEKWKIGRDKVDDGVLLLMASDDRALRIEVGYGLEGAIPDSAAGRIINEYIVPRLRAGDWPGAVQA
GVTALERRIEGEELPPPAASGRDEGSRLAGIRGWLGENGIAALVVLLILPGPIAAALAGVGVAIYMQSISAGLAMALLVL
GIKVIIKALPSGGGGGGGGGGGSGGGGFGGWRGGSGSGGFGGFRGGGGGRSGGGGASGRW
>SEQF2266_AEE65664.1 hypothetical protein BPTD_0166 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTITRWLGAGLLALLTTLLSGCGYNAIQAADEQVKASWSQVLNQYQRRADLVPRLVKVVDAYMTHERQVLVEVTEARAKV
GRVQLTADQLDDPAAVQRFQQAQGELSSALSRLLVVTENYPQLKAEGLFRDLQTELAGTENRLAVERERYVRSVQAYNVL
VRQFPEVITAKVFGYAPKANFGVDNEAEITRAPEVKFSNEGGSAPRPAQ
>SEQF2266_AEE65665.1 putative ATP-dependent RNA helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTSISFADLGLADSLLRAIADTGYTAPTPIQAQAIPLVLQGGDLLAAAQTGTGKTAGFTLPILHRLMQTKPAARKPGRP
RCLILTPTRELTAQVAESVQTYGKYASLSSMVMFGGVNINPQISALKKPLDILVATPGRLLDHAGQKTVDLSGVEILVLD
EADRMLDMGFIRDIRKVLALLPKQRQNLLFSATFSDEIRSLARGVLNDPGEVSVTPRNTATELVTQTVHLVEQHHKRDLV
SHLIRESGWHQVLVFTRTKHGANRLAEKLVKDGLSAVAIHGNKSQSARTRALSGFKDGSVAVLVATDIAARGLDIDQLPQ
VVNFELPNVPEDYVHRIGRTGRAGATGAAVSLVDDSEIKLLKAIERLIKKPIERRAVDGWTPPAGGPTAEDRADRGQRAG
GDNRAPQARDGQRRATGAHPQGSAPRNAAGPRADAKRNDAGRPQGRAPGETGATRAPAPARNRPVGNGTRGVLLGK
>SEQF2266_AEE65666.1 LysE family efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLSTWLTFFVASWAISFSPGAGAISAMSSGLKYGFARGYWNTAGLILGILFQFLIVAVGLGAVLATSELAFTLVKYAGV
VYLIYLGMRQIRTDAAPVTVDAGDPHRASIRELVGRGFLINTMNPKGTVFLLAVVPQFVDPAQPLTQQYLALAGTLAFTD
LVAMDVYTLLAAKVLRMLRKAHHIRWMNRVFGSLFILAGVFLATFRRHS
>SEQF2266_AEE65667.1 peptide chain release factor 3 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRQYNPPAMNIPQEVARRRTFAIISHPDAGKTTLTEKLLLFAGAIQIAGSVKARKASRHASSDWMEIEKQRGISVASSVM
QMEYRDCVINLLDTPGHQDFSEDTYRVLTAVDAALMVIDAANGVEPQTIRLLQVCRARNTPIITFINKLDREVREPLELL
SEIEGHLGMDTVPFSWPVGMGKAFGGVFDIRRNRMRIFRAGQERRGEDDEFIDGLDNPEIPRRFGAAFAQASGEIELINE
AAPAFDREAFLAGKQTPVFFGSAINNFGVQEVLDALVDQAPAPGPRQALEREVRPDEPKFTGVVFKVQANMDPAHRDRVA
FVRVSSGRFERGMRLKVARTGKEMRPNNVVSFLSQRRELLDEAYAGDVIGIPNHGVLQLGDVLTEGESLRFTGLPFFAPE
LFQAVEVKDPLRTKQLRVGLTQLGEEGAIQVFRPEAAGGALLLGAVGQLQFEVVAHRLKTEYGVDARMMPSRYTSARWIT
SDDPRALRKFMDANAAHIAYDVVDAAAFLITSPAQLRVAEDLYPNVKFHALREHGGKVFGDKA
>SEQF2266_AEE65668.1 hypothetical protein BPTD_0170 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVAMSWRLLIATLLVALGAAAWGGIQLGDWLVAHAPQAAPAPGQEGDASQQPVLDANGRSYVAQPPQPRVDGTLGVPDQ
PASRDWAVNTVSLFDTTGDPAVQISRDSITMDRAREIAANSDVPLPSGNSDITTLDLQALGGQAPIVPQEAIPASGMQQN
PAAVAQVAPQTNRAGGGNWQDALRRELAHCATQGFFERPSCSWAARNKYCAPNRAWGTMAECPRRPD
>SEQF2266_AEE65669.1 bacterioferritin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKGDKTVIQFLNKQLTNELTAINQYFLHARMLRHWGFNKLGKHEYEESIGEMKHADRLIERIFMLDGLPNLQDLHKLLIG
EDVPELLACDLKLEQAAQATVKEAIAHCESVRDYVSRDLFQDILDDTEEHIDYLETQIGLVDQVGLQNYLQSQMEVDG
>SEQF2266_AEE65670.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65671.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIRPFTRACLVAALGAVLAGCASNTGQAQAEGAAAANAATSADSFAQTTWELVRWTKADGGYRVISHGDNGEPIFLTFF
AQGKQYRVSGFAGCNRYTGAYRLRDGKLQITAPASTRMACPQPERARLEADYLRALAQIRSFTLDSGGAPRHLTFNVQGG
DVLDFMRRQDPPTPE
>SEQF2266_AEE65672.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAISPGRVALSFSLLLALAACAADPAGGGASRAQAPERHSDMLAQTNWELARWTRPGGALRPVPHGGAGKTAPITLSFT
HQRGAARLAGFAGCNNYSGQYTIANGLLIVTAPPVSTRMACANADLARLEQDYLAGLTAVTASRLDHDTRPQRLTLALRS
GDVLDFARRADPLAGGQPGAAKLVYVASSKAPCSAGAGRAQCYQVRDSASQPWLLWYGDITGFAFQPGIEYRLRVVEVRD
PNPPADASGVRWVLDSVVEQRVAAPRPAPAP
>SEQF2266_AEE65673.1 rhodanese superfamily protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAVVNIAAYKFVSIANPADLREPMLEQAGQRQLKGTVLLAPEGINLFLAGAADAIEGFLRWLRADARFADLQAKYSESA
RMPFRKLLVKVKREIIRMDHPAIRPEAGRAPAVDAATLRRWLAQGRDDQGRELVMLDTRNAFEVEVGTFRGALDWRIERF
TQFPQAVRDNQAALAGKTVVSFCTGGIRCEKAAIYMAEAGIEHVYQLEGGILKYFEETDGAGFDGACFVFDERVALDAAL
APQA
>SEQF2266_AEE65674.1 methionyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRTLFVTTALPYANGSFHIGHIMEYIQADIWVRSMRMAGHTVHFVGADDAHGAPIMLKAEKEGITPQALVARYAAERPR
YLDGFHIRFDHWHSTDTPENVALSQEIYRALKSEGLIETRSIEQFYDPVKGMFLADRYIKGECPRCHAKDQYGDSCEVCG
AVYAPTELINPYSALTGAAPVLKSSDHFFFKLSDPRCVEFLQQWTTGANRQGVKHLQAEVQAKTREWLVGDDGEAKLGDW
DISRDAPYFGIEIPDAPGKYFYVWLDAPVGYLASLKSYCAAKGLDFDALLDPAGPTEQVHFIGKDIIYFHALFWPAMLKF
AGRKTPDQLNVHGFITVSGEKMSKSRGTGISPLRYLEIGMDAEWLRYYMAAKLNARVEDMDFNPEDFVARVNSDLVGKYV
NIASRAAAFITRHFDGELAYDGDTDALAAEFAQQAESIRAAFEAREYNRAVREIMAHADRINQAFDAAQPWVMAKGIGAA
DAATRARLQDICSRALAGFKALSVMLAPVLPALASRVARELFGANADFAWGDAQQLPQRVAPFKHLMQRVDPKLLDDLFE
PPAAEASAPAALPGGEALADTITIDDFAKIDLRIARIVNCEEVEGSTKLLRLTLDVGEGRHRNVFSGIKSAYQPQDLVGK
LTVLVANLAPRKMKFGVSEGMVLAASHADEKAEPGIYVLEPWPGAQPGMRVR
>SEQF2266_AEE65675.1 hypothetical protein BPTD_0178 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVNTLFRFFSAALFALLGLIGMMMALVFMASTAIAVGVLYLVAKVRGKPFGVRAYWSQRQAARPGPFQAASAPFGQPRGD
VIDVEAREVR
>SEQF2266_AEE65676.1 putative iron sulfur binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMSITIEQIRGALAGVADPQTGLELNVCVKDRDIHLAADPAALTIELGYPAGGVADSVRALAGAALAAAGLGAVRVAVTW
NIIAHAVQPGLKPLPQVRNIIAVASGKGGVGKSTTAVNLALALAAEGARAGLLDADIYGPSVPAMLGLAGRPESRDNKTM
EPLVGHGLQANSIGLLIDADAPAIWRGPMVTQALEQLLRQTNWRDLDYLVVDMPPGTGDIALTLAQKVPVAGAVIVTTPQ
DIALLDARKGLRMFQKVHVPILGVVENMAVHICPQCGHAEHIFGAGGGRRVAEQYEVPWLGSLPLQRAIREQTDAGNPTV
AAEPESEVAGIYRDIARRVAARIAALPRDMAGKLPAVVVRPA
>SEQF2266_AEE65677.1 hypothetical protein BPTD_0180 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRILRVCPALLFALAAGQVHAKLPEVIVDPGGVPPAALQAINSAVDAIARLSEDQDGGEIDRLRRRARDATLAALATQG
YFTPTVTLTPGTDVGGETWDIAIEPGPRARVASVDLKFTGRVARPEYAARIQKWRDDWALKAGQPFINGDWNKAKSGLLD
AVSTRDFLLAHMTHSLAEVDAETAQVRLSVEIDSGPAVRMGALQTDGLQRVPESLVRRYVKYSEGAAYDQDKLDQWQQEL
QSTAFFRGAFVTLDQGARGGQDDVKVTAPGASARAPGSSGLASVAPAGDAEVAGGPTAAAPVLDSQGEITLPVDVRVVEA
PPKRLAVSLGVDDEAGVRFETIYRQNVVFGQPVTMETGLGVDRLRQRAYLDFNLPPDERGRKDSFGLLFDHSDVQELDVT
RYALGVTRLQERKGAGDSRVEYETRWGGLLAHDHVKIDGGDEYDLPTATLTAEWLRRDVNSKYDPREGNLIAVGGGVGAT
LDDGQPYMRLRLRGQKWWPIGKLDVLTLRGEVGRLWSNGRTRVPDDFGFRTGGARSIRGYRYQSIGVEQDDAIVGAPTLA
VASVEYDHYFNERWGIGVFVDAGDAAESFGDMDIAVGYGVGARVRTPAGPLFLDVAYGQRERDLRLHFSLGIAF
>SEQF2266_AEE65678.1 hypothetical protein BPTD_0181 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKIWGVVRHILVWWVPGVAMLAALACGFVFWTVASQNGTRLLLDTVARQLDGEIAGVRGSVLRGLRVDRIRLSVADVDV
AVDDLRLDVAWRALGQRLLHVRELAATRVEVGLHTPATPPPDSDEPFALRLPVELALDRLSLGEFVLRQDGEPLPVSAGE
LQASLAAGRHGARLTLDSLRVTHAVGTLRAQGRLDVASLAQPWPLTASLDLQAQGSGPESPLCLAPLLDARDKTAKDKAA
KDKGKDKGKDKGKDKGKDKGKDKGKDKGKDDAGEKPDEPADPCGLALQVQAQGTLEQLEAELTGAGQGLALEARAGLLPQ
APFPLRTASLKLTREDKSSLAATLDWQPQPGQPGRDRVVATFEAERLDLQRLAGEAIPPAMLSARGGLDAEVDDLSSLHR
ATLTLDVTKGSSWNRHPLAGKVAASVSALGDPPGAFATAAPAQPHALPGGLWVDQLDVDLQLGPNRVRAQGKLDERAGAL
KLDAQAPRLDAFWPGIPGAASVKAALDGALARHRGRIEAAYTPADARARVLGRARAQAQLEFSGGWGAGPAAEGAAAGWR
GSVSRLTADSAGFALALERPVTLAYVPEALAPQWQWQVGATTLALTFPDKQRVALAHAASRGGAGRWETAGRADALVITA
AMVRQILVALDPEAVARAERDSGSPVNAPVPAAQRRISLDASWDLKFAGALAGKVRVARRDGDLRIPGDPPIPLGLRTLV
LEANATPTGGQASRLDARLDMATARMGAINGTASATLGGLALDPRQPIRVALDADVTDLAWLGLFVGDTLEVGGMLKANV
RAQGSLDGKWNASGTVNGDKLRVVRIDDGVRLIDGMLRARLQDDRVILDSLRFPASLRVMPAEWRTREWVSTNPDAKGGY
LEATGQWELSAARGQVRLQLHRFPALQRSDRYGMVSGVVTLDAALPRISINGDITADAGWVSLEILQGVPTLDDDVKVVR
AGQKNAQGDGPPLQIDMNLKVDMGPRFYITGMGLDAGLLGSIQIRLQEGRLTGYGALRTRGGGIEAYGQKLRLRRGTLTF
QGRLDNPLLDIEALRTGEQVEAGVRVAGTAQRPRIDLVSYPDVSDVEKLSWLVLGRGPDASGGDTALLLSVGTALLGGGQ
PFYKQFGLDDVSVRSGAIGSSGSLLPDRTVAAGVNRDSDADLATQFLVASKRFANGITLSVEQALAGSETVGRASYRLAR
GLSLDLKAGSVNGIALVYRILLDD
>SEQF2266_AEE65679.1 deoxycytidine triphosphate deaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIKSDRWIRRAAEAGMIEPFEPGQVRTAGGNRIVSYGTSSYGYDVRCADEFKIFTNINSTIVDPKQFDEKSFVDFKGDV
CIIPPNSFALARTVEYFRIPRSVLTICLGKSTYARCGIIVNVTPLEPEWEGHVTLEFSNTTPLPAKVYAGEGCAQMLFLE
SDEVCETSYRDRGGKYQGQRGVTLPRT
>SEQF2266_AEE65680.1 hypothetical protein BPTD_0183 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAPATVASPVVTCLRYRNASAAIEWLVHAFGFEAQRIVPGPADTIVHAQLTLGSGMIMLASVTDTPFSRYMKQPDEVGG
VETQSVYLVVADPDQAYRDAQAAGAEILIDIADADYGGRGFSCRDPEGHIWSVGSYDPWQ
>SEQF2266_AEE65681.1 putative lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAQVLINIDVPDAARAALFYERAFGLRPQRRLGPQAIEMAGAAVPIYLLEKATGSQAATGTSQGRDYARHWTPVHLDFV
VDDCDRAVATAVAAGAMLEDPPHSHAWGRIAHLSDPYGNGVCILQFLGEGYDALAAAAP
>SEQF2266_AEE65682.1 hypothetical protein BPTD_0186 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIREKRGCFAAQEPQMFGFRRKDTQQYDQEAQDAFVERVAAAARDFVAAVPAGAGLDYSPASIAALDAVLEQAHLGALA
LDPVQRVGAAAYLYEVARRRHGGLYEVCDDDDPVVLVTGEPEFDVCLCAIAKVERRIDAGPQEDLRPFFGRYEQAVAARR
PDIIR
>SEQF2266_AEE65683.1 Orn/Arg/Lys decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFRFPIFIIDEDYRSENASGLGIRALASAIEAEGVEVIGVTSYGDLSSFAQQQSRASAFILSIDDEEFDVDSPEDVAGA
IKNLRTFIGELRFRNADIPIYLYGETRTSEHIPNDILRELHGFIHMFEDTPEFVARHIIREARSYVDGLPPPFFRELVKY
AQDGSYSWHCPGHSGGVAFLKSPVGQMFHQFFGENMLRADVCNAVDELGQLLDHTGPVAESELNAARIFHADHCFFVTNG
TSTSNKVVWHANVAAGDVVVVDRNCHKSILHAITMTGAIPVFLRPTRNHLGIIGPIPLDEFDPENIRRKIEANPFAREAL
NKKPRILTLTQSTYDGVIYNVEMIKEKLGTYVDTLHFDEAWLPHAAFHEYYRDMHAIGPDRPRSQDAMVFATHSTHKLLA
GISQASQIIVQESESRKLDRNLFNEAYLMHTSTSPQYAIIASCDVAAAMMEPPGGTALVEESIREAMDFRRAMRKVASEF
GKDDWWFKVWGPNRLAPEGIGHRDDWVLESGDHWHGFGDLAPGFNMLDPIKATIITPGLDMSGSFGESGIPAALVSKYLA
EHGVVVEKTGLYSFFILFTIGITKGRWNTLLTALQQFKDDYDRNQPLWRILPEFCRGHRRYERMGLRDLCQQIHEAYRER
DVARLTTEMYLSDMVPALKPSDAFARMAHREVERVEIDQLEGRVTGVLLTPYPPGIPLLIPGERFNRTIVQYLQFAREFN
ERFPGFETYIHGLADEEGPDGAKRYYVDCLKDAGEQ
>SEQF2266_AEE65684.1 hypothetical protein BPTD_0188 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSREYPVSMFDVAVIGAGAAGMMCAAVAGQRGLRMVLIDHAAKLAEKIRISGGGRCNFTNLGAGPANFLSDNPHFCRSA
LAGYTPQDFLGLLRRHRVHWHEKHRGQLFCDDSSETIIEVLRAECGQGGVAWRMPCRVDEIARREGGGFTLRTSTGAIDA
RAVVVATGGMAIPQLGATDYALKVARQFGLKVVEPRPALVPLTFDPAQWQPFAALSGVALEVTLSTGQGKGRAAFLEDLL
FTHRGLSGPAILQISSYWKPGEPIVLDLAPGRDLAAELIGAKPGNRQQLHTVLAGLWPRRLADTWLDVAGRAVGADLAAA
RLADVPDRTLRALAALIHDWRLVPSGTAGYKKAEVMRGGVDTRALDQKSMQARGVPGLYFIGEAVDVTGWLGGYNFQWAW
ASGYACGNAL
>SEQF2266_AEE65685.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65686.1 superoxide dismutase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPYVLPALSYAYDALEPHIDARTMEIHHTRHHQTYVNGLNAALEGAGLDSEEPVEQLLRRIPALPPGIHGAVRNHGGGHA
NHSLLWTVMSPSGGGRPDGRLAADIQAQLGGHDAFQAAFTQAALGRFGSGWAWLTVTPAGRLRVDSSANQDSPLMEGNTP
ILGLDVWEHAYYLQYQNRRPEYIEAFYRVVDWAEVARRYEIALAELGREAA
>SEQF2266_AEE65687.1 metal transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHSRHRVRPALTSVSAMTLAVLVACLACYQLWEFLDRRWPHVALAMAGGMVAAGATALGAVPVLFSQTLSQRVQDCMF
GFGAGVMLAASAFSLVVPGIAAAGAQGYGPWGAGILVGAAILLGGAVLLASDRLLPHEHFIKGKEGRASRTLRRTWLFVF
AIMLHNVPEGLAIGVGYAGSDSLRGAALATGIAIQDVPEGLVVALALLAAGYSRAFSVALGMLSGLVEPLGAIVGAAVVG
WSAAMLPWGLGFAAGAMLFVISHEIIPESHRKGHEVPATAGLMLGFVLMMLLDTALG
>SEQF2266_AEE65688.1 glycine cleavage system aminomethyltransferase T [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPLKRTPLAEEHLAAGACMVDFGGWDMPLAYGSQLEEHHAVRQDAGMFDVSHMLNVDVGGADATAFLRRLVANDVARL
ATPGKALYSCMLNPQGGIIDDLIIYYFAPDQWRVVVNAGTADKDIAWMQRVAAADGFDVVIAPRRDLAMVAVQGPNARAK
VWAARPAWQAASEPLAPFSAAAVEAGTLVARTGYTGEDGFEIVLPADAVVQLWRDLLAQGVRPCGLGARDTLRLEAGMNL
YGQDMDELVHPDQAGLSWTVALKDEARRFVGRDAIEQFAVPRAFVGLKLQERGVMRAHMPVRCAQGMGELTSGTMSPTLG
VSVGFARMPVGVQPGDAVEVEIRGKWVPALVCKLPFVRHGKAVEHS
>SEQF2266_AEE65689.1 glycine cleavage system H protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLPTDRKYTESHEWVQAEGDVFVVGITDNAQEQLGDLVFVGDVKVGATLKAGETAGVVESVKAASDIYAPVDGEIVAFN
DELEANPSLINESAYTAWIFKIKPANAADLDKLLDAAGYQAVAG
>SEQF2266_AEE65690.1 glycine dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRAPDTHSDFIPRHIGPSDEDQATMLVAIGAASLDALIDEVVPPRIRSRAPLALPAARSETDVLQDLKRIAARNQIYRN
YIGQGYYGTHTPNVVLRNVLENPAWYTAYTPYQPEISQGRLEALLNYQTMVADLTGLDISNASLLDEGTAAAEAMTLARR
GSRSSSPVFFVSQHCHPQTLEVVRTRAEGLGIELVIGDESRGLPECFGVLLQYPHSLGGVADYRELAQAAHAQGAVVACV
TDLLALALIEPPGQWGADIAVGSAQRFGVPFGFGGPHAGFMACRDAYKRNMPGRLVGVSKDAQGNPALRLALQTREQHIR
REKATSNICTAQVLLAVMAGLYAVWHGPRGVRRIAERVQSLTGALRAALAGLGVKVANDTWFDTLSLETGAATPAILAAA
DCARINLRQVDGARLAVSLDETVTLADLQALVNVFAAGLGKDEVALAPPQASLDGIPAAVRRQGPILSHPVFSSVQSETD
MLRYLRKLADKDLALDRTMIPLGSCTMKLNATAEMIPITWPEFALIHPFAPASQTPGYRELIEGLSAQLCEITGYDGISL
QPNSGAQGEYAGLLAIRAYHQANGQPQRNVCLIPASAHGTNPASAQLAGMDVVVVASDANGNVDLADLRARIAQVGERLA
ALMITYPSTHGVFEEAVTEICDAVHEAGGQVYLDGANMNAMVGVAQPGKFGSDVSHLNLHKTFCIPHGGGGPGVGPVAVR
AHLAPYLPGVLDARGRLDPEAKVGPVSAAPYGSAGILPIPYVYIALMGAEGLRRATEVAILNANYIATRLRGHYPVLYAG
RNGRVAHECILDVRPLKETSGISAEDIAKRLMDYGFHAPTMSFPVAGTLMVEPTESEGLAELERFIEAMIAIRAEIAQVE
SGERDRDDNVLRNAPHTAQMLLAEEWHHDYPRQQAAYPVASLRENKYWPPVARVDNAYGDRNLVCACLPVEAYA
>SEQF2266_AEE65691.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTVETNPNPLGPIKAVRSRDLLADALREQILSGARPSGVALPSERELTEETGLSRAAVRDALRVLESEGLIETRQGRYG
GSVVKLPANDALARPVALFARARGISLQEMIEARVAIEPTIAELAALRRTPEDLQALIQATDLLQEALPHVEQFLDLNVR
WYFALADACHNDLLRAFIVSIAGLILTATSREGQTPEPTRRLILQSHRRVVEAVIAGDAPAARRRMERHVAGYQEHYERL
GLTPSA
>SEQF2266_AEE65692.1 hypothetical protein BPTD_0196 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAVSSSVPPTPLGGVRVLDLSKVLAGPLCTQYMADMGADVIKVEAAGQGDDTRGWPPFQDGQAAVFLSCNRNKRSIALD
LKSAHGRAVVQRLAAWADVVVHSFGPGVAQKLGVDWEALSEINPRLVYCAISGFGPVGSLSHGKGFDVVLQAFCGMISIT
GETEGGAVRSPFSPVDQATGLHALIGILAALRQRDASGRGVTVDASLFDTALGFMGYFMQGYWARGTEPARAGAGHESLC
PYQDFATADKPIILGIANDALWRAFCALAERPELASDPRFATNAQRVANRAQTLAATRALLAARTRGEWLPALEQAGIPC
SPIHTLVEVDAHPHTRESGMVFDYPETGTDAGPLKGVAQPVRFDGMRLTTPKRPPSLNQDWASVLADAGYSDPEVRDLLQ
QMA
>SEQF2266_AEE65693.1 hypothetical protein BPTD_0197 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMNVLIRRALCAAIASLAAAAAHAAYPEQPVRIVVAFAPGSGTDNVARYYATRLSEELKQPFVVENKPGANGSIAATQVA
RTQPDGYTLFLGSNSTLSAAPFLFKKLPYEPLKDFTAVARLSDIPSMLVVGADSPIRDFDQFIGKARAEPGRVTWANANT
AHLAAGMALTKQAQLDMISVPYKSSPQALTDVIGGQVTAMVVDTSAGTAFVQQGKVRALAVTTARPVAAMPGVPSMSERF
PGIDVYSWLGIVGPAGMPDEVVTVVNKAILKINASEDTVRFLRENAGAEPPPSSSPAEFTQFMHAQLEVWRKLLRDANVE
PM
>SEQF2266_AEE65694.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE65695.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65696.1 putative restriction endonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVARHGVGERVVQCPPMLTTSDPLPHPLPHPLLHDGVVAAVVRLCADATLDFPARCARLEAAIRACTRDQIIEHLQHGG
VISECIGHDSSEEKLLAKYSDVLLACALGELGFQARVLAERSDAADVYAECGDQRIVGDGKIFRLSRTALNPKDYKVPSL
KKWRQGAGYSADYSVLLAPSFQYPLSRSQLYAQAIDNNVLLLSFEQLAFLVRHHQPGRDYRPLWEYAGTRAGQDTAAWKE
ARQYWHGLNQLVARLAGQTEQALRDSYAARRQLLQRQFDDEIAHWDAEAQRIRGLSREQAIAELLVSKKIQARVDLMRGA
QRQLTLQLDDARA
>SEQF2266_AEE65697.1 hypothetical protein BPTD_0203 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLTIRKLAYTLAFSTLVLAGCTTASKKTDGQAATPADQASSQQASAASVEFYVAQAKAGDGLMEVKVPDGSLYMQRQPV
LTRADLTEAAALVDRQGQNFVGLRFTEAGARKLNDISSKNIGNMLALVIDRELVAAPRIAEPLNRGVLAFGVPSAKAASE
IAAKIRGDAGAPAAGVPAAPAPKPAPKP
>SEQF2266_AEE65698.1 thiamine biosynthesis protein ThiC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNANPTFLAATAEVDAAAVAPLPKSRKVYETGSRPDIRVPFREIEQADTPTMFGGEKNPPLTVYDTSGPYTDPQASIDIR
RGLPALRRAWIEERGDTEVLDGPTSDYGKERLTDPKLTAMRFDLQRPPRRARAGANVTQMHYARRGIVTPEMEFIALREN
LRREHYLETLRASGPDGEKLAKRLLRQHPGQSFGAALPSAITPEFVREEVARGRAIIPANINHPEIEPMIIGRNFLVKIN
ANIGNSAVSSGIGEEVEKMTWAIRWGGDTVMDLSTGKHIHETREWIIRNSPVPIGTVPIYQALEKVDGKAEELTWEIFRD
TLIEQAEQGVDYFTIHAGVRLPFIPMTADRMTGIVSRGGSIMAKWCLAHHKESFLYERFEEICEIMKAYDVSFSLGDGLR
PGSGYDANDEAQFAELKTLGELTQVAWKHDVQVMIEGPGHVPMQMIKENMELQLKHCDEAPFYTLGPLTTDIAPGYDHIT
SGIGAALIGWYGTAMLCYVTPKEHLGLPNKKDVKDGIITYKIAAHAADLAKGHPGAAIRDNALSKARFEFRWDDQFNLGL
DPDTAKEFHDETLPKDSMKVAHFCSMCGPHFCSMKITQDVRDYAAAQGVSEKDALQQGMQEKAVEFVKKGAEVYHRT
>SEQF2266_AEE65699.1 putative aldehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHANFIDGAWLDGVDARPNINPSNLADVVGDYAQADAAQAGMAIAAASAAAHAWARSTGQRRADVLDAVGTELLARKEEL
GRLLSREEGKTLPEGVSEVTRAGHIFKFFAGEALRIQGEKLPMTRPGIEVDVTREPVGVVGIIAPWNFPIAIPAWKIAPA
LAYGNTVVFKPADLVPGSAWALAEILSRAGLPAGVFNLVMGRGSVVGQAILDDRRVNAISFTGSVATGRRVAEAAIGRMA
KVQLEMGGKNPLVVLNDADLKVAVDCAVNGAFFSTGQRCTASSRLIVQKGIYPRFVEAVRERLQGLKVDDALAPGTDIGP
VVDRSQFDQNLAYIAIGREEGAQLAWGGEPLKRANEGYYLAPALFVDCDNSLRIAREEIFGPVAAVIPVDSYEQALEVAN
DTEFGLSSGIVTTSLRHATHFKRESQAGMVMVNCPTAGVDYHVPFGGRKGSSYGPREQGRHAAEFYTSVKTAYTAA
>SEQF2266_AEE65700.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASEFSQRLTQALGADVVATSPADIEPWLSDWRGIYRGQAQAVVRPRTTDEVARCLALCQQAGVPVVPRGGNTGLCGGA
TPDAAQANVVLSLERMNAIRALDTVANTMVAEAGCILGNLRRAAQDANRLLPLSLAAEDSSQIGGNVATNAGGVNVVRYG
MARELVLGLEAVLPNGEVLHGLRTLRKDNTGYDLKQLLIGSEGTLGVITAVALRLFPRADTRTVVLAAVESPRQALQLYE
LLFEQCGARLQAFEYFSGDCLDLVLTHVDGLHEPFAQRYPAYVLVELADTIDEAALNALVEEVIGAALERELCLDAAVSA
SLAQLQTLWRLREEISEAQRADGPHLKHDVSLPIERIPEFMETAAARVRERYPDIRPFIFGHFGDGNLHYNLSRPAGAPR
EWAAEQGDAVTDLVLDEVLRYGGSISAEHGIGQLKRDHFLHSKDPLELRLMREIKRVLDPAGIMNPGKLL
>SEQF2266_AEE65701.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLQPTPTLTDQVAGQLARAIADGAYAVGAKLPTGRALAQQYGVSAAVIREATERLRAQGLVQSRQGSGCTVVARTPAGGF
QVPAGGLDRAHLARVYELRMELEGGAAALAARRRGAADLDRMRQALQALQREPIEPEQGVVHDVGFHVAIATATANPYYL
QLLQYLNLQLRQAVETARANTRRQGDPVHAVHEEHLAIYRAIERGEPEAARAAAQHHLLGAAARLQLDMNL
>SEQF2266_AEE65702.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF2266_AEE65703.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE65704.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQVEMTEFPVGKPEEALYGVASTPDGALWFTLAKGNAIGRLSPDGEVSRFPLPHADGQPTTITCGPDGRPWFTLSSANA
VGRLSPDGALRMFELPRPASRPFGIAAGHDGCLWFAEMAGDRIGRITIDGDIEEYDLPVKGGYPSCMAAGRDGLMWFTLN
QAGAIGSISATAAPRIFPLGAADAAPVGIASDAQGALWIAQAGNGAIARFDAGGRITEFPLHSRAARPHALAADAAGNLW
FTEWGANRIGRISEAGDTAGYELAAPGSEPHGIAIDPHGCVWAALETGSLVRLQASPRD
>SEQF2266_AEE65705.1 putative acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTASTPTAILIRDSRDADLPAIAAIYAHHVLHGTASFELEPPGLEALRERRAAVLAHGLPYLAAECGGEIVGYAYATPYR
PRPAYRHTVEDSVYVRAGHAGQGIGGKLLAALIDRCAAGGWRQMLAVVGDSANTASVALHARHGFDTIGTFRSVGYKHGQ
WRDTVLMQRALGEGDATPPSRP
>SEQF2266_AEE65706.1 hypothetical protein BPTD_0212 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQNHQRRALVLFSGGQDSTTCLAWALERYAHVETLGFDYGQRHRVELDARQVVLRELRANFPDWAQRLGDDHLLDLGILA
QVGDTAMTSDREIEMQANGLPNTFVPGRNLLFLTLAAALGYRRQLDVLVGGMCETDFSGYPDCRDDTIKSQQVTLGLGLG
TRVTIETPLMWLDKAQTWELADRLGGQALVDMVIEHSHTCYLGERGQRHDWGYGCGHCPACALRKNGWERWVAGAAHAD
>SEQF2266_AEE65707.1 phosphoenolpyruvate carboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAYNAPVSNCQFRLTHILPIPQRHGAPTDPFQMNAIRQQSDSAEPLRHDIRLLGRCLGEVIQACEGKRVYDTIETLRRT
AVRFRRAGDPADDKLLQARVKQLRGNDPNSVARAFSYFLHLSNIAEDRDQNRRQRERALAGAGPERGSLRQAIESLKAQG
VNNARIRRLLSEACVMPVLTAHPTEVQRKSTLDVHREISSLLVQRERELTADELSELDLALIGQVATLWQTRMLRYTRLT
VADEIENALSYYRSTFLNVIPRVYGDLARLLNREPVKPFTPPPPPLEPFLRMGSWIGGDRDGNPNVDAATLERALLRQAT
VLFEHYLQEVHALGAELSASTLLIEADPALLALADAGGDDSPHRRDEPYRRALIGIYARLAATARHLTGQKLARRATVPA
APYDTPDALAADLAVIAASLSARHGAPIARLRLSGLQQAVTVFGFHLATVDLRQSSDVHERVLAELFARAGDGIDGQAVD
YLALDEAARVAGRELAHARPLASPWIAYSEETASELAVLRAAAAGRARYGRQAVLQSIVSHTETLSDLLEVLVLQKEAGL
IAPPGETIAPGDGLMVVPLFETIPDLQRGPEIMAAWLDLPEVRQRVRLAQGDTQEVMLGYSDSNKDGGFLTSNWSLYQAE
RALVDVFSARSVRLRMFHGRGDSVGRGGGSSYDAILAQPPGTVAGQLRLTEQGEVIQSKYKDAEVGRWHLELLVAATLES
SLAPQAAATSAEDAHMQQHAPAMSFMSELAQRTYRGLVYDTPGFADYFFAATPISEIAGLNIGSRPASRKKGQHIEDLRA
IPWGFSWAQCRLMLTGWYGMGSAIEAYLETGAQGAPRSRRARLAQLREMASDWPAFRTLLSNMEMVLAKSDLAIAAGYAQ
LVPRRGLRERVFGAITAEHGRTLAMLRLLTRRDLLADNPGLMASLRERFAYIDPLNYLQIELIKRHRAAQRRAGDDADIR
VPRAIHLTINGIAAGLRNSG
>SEQF2266_AEE65708.1 autotransporter subtilisin-like protease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMPPPAVPPQLPEVPAADLPRVRAPLSTYRRPQRTDFVTPTGGPFFAKQDKALNTIDLKMAHDLKLRGYRVKVAVVDEGV
RSDHPLLNVEKKYGGDYMADGTRTYPDPKRQGRHGTSVALVLAGQDTDTYRGGVAPNADLYSANIGTRAGHVSDEAAFHA
WNDLLGHGIKIFNNSFATEGPEGEQRVKEDRNEYHSAANKQNTYIGRLDRLVRDGALLIFAAGNGRPSGRAYSEVGSVGR
TPRVEPHLQRGLIVVTAVDENGRLETWANRCGQAQQWCLAAPSTAYLPGLDKDNPDSIHVEQGTSLSAPLVTGAAVLVQD
RFRWMDNDNLRTTLLTTAQDKGPYGVDPQYGWGVLDVGRAVQGPAQFAFGDFVARVTDTSTFGNDISGAGGLVVDGPGAL
VLAGSNTYAGRTTIKRGTLDVFGSVTSAVTVEPGGTLTGIGTVGTVTNQGTVVNKEAGLHVKGDYSQTAQGLLVTDIGSL
LDVSGRASLAGRLHVDDIRPGYVGGDGKSVPVIKAGAVSGVFATLTRSPGLLLNARLDYRPQAVYLTMRRAERVHAAAQR
GADDGRRASVLAVAERLDAAMRELDALPESQRDAAAPAAAIGRIQRVQSRKVLQDNLYSLAGATYANAAAVNTLEQNRWM
DRLENHLAQAGGERVAAIAEYRHGQLRWRPDGLQGRQRGNGIMLGLAREVSAGLSLAAALTHSRTHWDESSGAPARDNAA
MTTPGVLLGARRAWEDGWFVQGALGYSRYRNQATRHISLGDAGHTVGATARGHVWQADAGLGRQWTLAPGHTLAPRAGLQ
LTHLRQQGFSESGAQGLGLRAHALTRTVPTLWAQLQSRHAFMLGATPMTAQLQLGVWHDLRARRYAASGGFAGLAQDQGA
SGYWPVPRTRVQGALGLRAEFAPGLVLGLGYTGQLATHWVDHQLSASLTYRY
>SEQF2266_AEE65709.1 3-hydroxybutyryl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDNPIQNLAVVGAGAMGSGIAALFASKGFDVVLIDPMEGALTRAAQVIERQLGVYAPDAIAPAMQRIRMDAGLEAACSAQ
LVIEAVPEKLALKRDIFARLDTLCDPQAIFATNTSGLSINDIAQAVTRRDRFVGTHFFTPADVIPLVEVVRNDDTSEQTV
ARVMDMLRAGGKRPVLVRKDIPGFIANRIQHALAREAISLLEKGVASAEDIDEVVKWSLGIRLALSGPLEQRDMNGIDVH
YAIASYLYQDLENRTTPSELLENKVQAGELGAKSGQGFYAWPPERRERVLRDKSAALAELAAWLENRKPV
>SEQF2266_AEE65710.1 short-chain fatty acids transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKLTSFFTELMRKYLPDPFVFAIALTLLTVLMAFGIEGQPLDQITREWGKGFWSLLAFTTQMAVILAMGYVLATAPLTD
RLLDRIVSHVHQPRTAIIVATLVGGVGSYLNWGFGLVIGGVVAKKLALKVKGVHYPLIIAAAYSGFTMYGLGLSASIPVL
VTTPGHPTADQMGVIPLSETIFSLPMLITSLVIIVTLPLLNAWLHPKQGEQVVEVDPAIDQSSAPAKTADELTAEDTLAS
RLNNSRILSLLIGLLGIAYVVFYFMDGKSLDLNLINFIILFLGIILLGTPAAYVAKLNEGIKTISGIILQYPFYAGIMAI
MAIMAGSGLVATISKVFVDVASPGSLPFWGLISSFVINFFAPSAGGHWVIQGPFMIDAAKEIGSALNQTTMAVMLGNAWN
DLVQPFWILPALALSKLKLRDVMGYTVIMMLWVGVIHIAAVLAWGYLTH
>SEQF2266_AEE65711.1 short-chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPTAYLVTGASSGISAAIARALLDAGHRVVNIDYRLPADAPQGLASYQADLTDEAQTLAVAREVTEAYDIVGLVNNAGA
TRPGTADTATLADLDYVVALHLRTAMILVQAALPAMRAAGYGRIVNMSSRAALGKPERVVYSATKAGLIGLTRTLAMELG
GDGITVNAIGPGPIATELFRNSNPEGAPRTQRIIDSIVVKRLGTPEDVARAAMFFLSPDNGFVTGQVLYVCGGTTLGVAP
V
>SEQF2266_AEE65712.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASRLYNGARSERLHFHLLHTGSMVEQVPQQPGVSYVQSFARGLSVIRAFGPQRPQMTLSEVAAATGLTRAGARRILLTL
ASLGYVAQEDRRFTLTPRILELGYAYLSATPLWDLALPYMEEVAETTRESCSVSVLDGVDIVYILRLSTHKVMTINLAVG
SRLPAWVTSMGRVLLAGLPEAEQDRLLDESQIQPYTPATVVDRAELKRILAGVRADGYACVVQELEPGLQSVAVPIVDRG
GRVIGAMNVSGHANRYSREEMLQAFLPPLRSAAEHINQALRRR
>SEQF2266_AEE65713.1 3-oxoadipate CoA-transferase subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISKLVATAADALADVPDGATVMIGGFGTAGQPMELIDALLEQGAKDLVIINNNAGNGTTGLAALLGAGRVRKIICSFPR
QVDSQIFDGLYRAGKLELELVPQGNLAERIRAAGAGIGAFFTPTGYGTPLADGKETREINGRQYVLEYPLHADYALIQAE
RGDRWGNLVYRKTARNFGPIMASAARVAVAQVRQVVELGQLDPEAVVTPGIFVKRVVQIDAPRGAKEQ
>SEQF2266_AEE65714.1 3-oxoadipate CoA-transferase subunit B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSKLTRDEIAARVAQDIPEGAYVNLGIGLPTLVANHLPADREVILHTENGMLGMGPAPAKGQEDYDLINAGKQPVTELP
GCSFFHHADSFAMMRGGHLDICVLGAFQVSQQGDLANWHTGAPDAIPAVGGAMDLAIGAKDVFVMMELQTRDGQSKLVQA
CTYPLTGVRCVSRVYTDMAVFDLRAGQITVTDLFGDTTREQLLALTGLPLKFAD
>SEQF2266_AEE65715.1 methylmuconolactone isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLFMVQMQVNLPPDMPAERADKLKADEKALAQQMQRDGKWRHLWRVAGRYANVSIFDAADNDELHQMLSALPLFPYMDIQ
VTALARHPSAI
>SEQF2266_AEE65716.1 YciI-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPYIIETFDKPGSLAVRQQHRNAHLQFLDQHKHLLLACGAKLDDDGKDLGGGLYVVDVDTRAAAEQFIQADPFHLAGLFE
RVAITRWRKAYVDGTSYL
>SEQF2266_AEE65717.1 3-oxoadipate enol-lactone hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSYADLSQARLYYVIDGPADAPVLVLSNSLGTCADMWARQIPELSRRFRVLRYDTRGHGKSSVPDGEYSFAQLGGDVAEL
LEHLRIERAHFCGLSMGGPTGMWLALERPELIDRLVLCNTAARIGSAEGWSARIAAVRQDGLETMAPGLVERWLTPQYRA
AEPGLVQVLVDMLRRIPDAGYMANCAALRDADLRERVAAIRARTLVISSTHDLAATPQDGKALAAAIPGARYVELDTSHI
SNWEQPEAFTRALTGFLTE
>SEQF2266_AEE65718.1 hypothetical protein BPTD_0224 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNGMQRWKQRPPGSNWGDFGPDDQLGRLNLITPAEVLKAAQEIRAGRSFCLSLPLDLPGGNVLNPRRHPPQLSPTRLQDT
PYVNFPLRNINPDAVDVLSDDQVLLSMQYSTQWDSLAHVGALFDADGDGRAELCYYNGYRAGIDIVGPADADHAGCGCNT
GGPSSALKLGIENLAQHSVQGRGVLLDLARHYGAGRTLVGYKELTQALAADGIEIESGDMLVLRTGYAKAVVGMNGKPDA
DVLHQYGAALDGTDAELLQWITDSGIAAICADNYAVEAYPARERQGPRAMLPLHHHCLFKLGLPLAELWYLKDLAEWLHA
NGRHRFMLTAPPLRLPHAIGSPVTPVATV
>SEQF2266_AEE65719.1 phosphate starvation-inducible protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISRVSKFAACTLVSLFCSTAAWAQASASKELTPQQKRMAECNKSATGKTGDERKAYMSSCLKGEEPANKLTPQQQRMKD
CNSRASEQALTGKKRKAYMSTCLSGKS
>SEQF2266_AEE65720.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE65721.1 high-affinity branched-chain amino acid transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNVNAVESGYGASQVLFGVDLEIGAGQVVTLLGRNGMGKTTLLRTLFGQLPLRAGSVRFAGQEIGGWSPDRIARAGLAI
VPEGHQCFPNLTVREHLTAFVAARNPSIGQPWTPQRVFELFPRLGERAGNMGNQLSGGEQQMLAIGRALVTNPRLLILDE
ATEGLAPKIREEIWTCLARLREAGQTILVIDKYVERLLGLADRHVILERGKVVWKGDSAALDADRGLWERYLGV
>SEQF2266_AEE65722.1 putative branched-chain amino acid transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPAASPALRADGLVRRFGALVATDRVSLTLAPGEIHALIGPNGAGKSTLIHLLSGTLPADAGSLKMGERDITALNAHQ
RVAAGLSRSYQITNIFKSFSVLDNLLLAVQARAGSSFRFWRRRAAERELYDAAHELARQCAIDAGMLQRPAGTLPHGEQR
KVEFALALAARPSVLLLDEPMAGMGPDETLRLTELIETLRGRAAMLLVEHDMQAVFRLADRISVLVYGRVIATGTPEQIR
ANPEVRQAYLGDEEQTAALEGARC
>SEQF2266_AEE65723.1 branched chain amino acid ABC transporter permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHRSTLWTLALLAALALFPLVAPALGLDFYISFVRRVLIYALAATSLNLILGYGGMVALGHAAFFGAGAYAVGILGAAGI
TSALLAWPAAIALAGALAWITGAISLRTRGVYFIMITLAFAQMVYYVFISLRQYGGEDGLNLSGYSTLPGLDLANDLTFY
YLVLVLFAVLMGVFGRVVDSRFGAALQGIRENESRMESLGYPVYRLKLTAFVISGAAAGLAGALLANHNLFISPSLMHWT
QSANLLIMVLVGGIGLRYGGVAGAVVMLVLEEVLRQWTEYWHLPLGVLLLCVVLGAPRGLVGLVGPWFAGRAGADSTRAG
T
>SEQF2266_AEE65724.1 branched chain amino acid ABC transporter permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTFTLIVEQLLNGLQFGLMLFLIAAGLTLVFGIMDIMNLAHGSLYMAGAYVAAETMQRTGSFTAAVLVAALATGLVGAVL
ELTLIRKLAVRDHLAQVLGTYAVILIANDLVKMIWGPAPVMLNMPAALSGPVRLLPDLLYPAYRLMIIVFGLAAAAGLYW
FVTRTRAGVLVRAGASNRQMATLMGVRVPLLFLGVFVLGAMLAAVAGALLGPVTAVQIGMGEGILILVLVCIVIGGIGSI
RGAFVGALLVGMVDTAGRAFLPMLLRQVFPPAVASSVGPTLAAIAIYVLMAGVLVFRPAGLFPARG
>SEQF2266_AEE65725.1 putative ABC transporter substrate binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLIPSLLAALALAPGLANADPIKVGIANDISGPFAALGAEARDGFNLAIKELGGKLGGQQAEFLQTDMGGNPDQARQLV
TRYIQREKVDFFTGPIGSNVALAVGPALFAAKIPYLSNNPGPSQYAGAQCNKFWFGNSYQNDAFHEAAGKVAADRGYKKV
FIMAPDYPAGKDALTGFKRGYKTAVAEELYTKLGQIDYAAELAQIRAAKPDAVYIFLPGGMGINFVKQFVSTGLAQGTAL
VGPGFSADEDVIQAVGEPMLGMVNTAQWAHDLDVPQNKKFVEAFRKEYNGRYPSVYAAQAYDVIMSIDAAVKQAGGKASD
RDAIVKALEQADYPSVRGSFTYGKNHYPIQAYYARVVEKDGSGRITNKLTGKVFDKYQDVYVGDCKL
>SEQF2266_AEE65726.1 putative esterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAIYRHYDRAALDVQYNARATVPDIQPILKRYAEASQQARDALPCTLDVPYGDHPDELLDIFPADGVRAAPVLVYIHGG
YWRALNKSDSCNMAPAFTRAGALVVAVNYSLAPAVTLDRIVDQNRRALAWIHRHIAEYGGDPARITICGSSAGGHLVGAL
LAGGWHGQYGAPEDIVHSAAPLSGLFDLRPLVHTHINEWMRMSPADAERNSPALHMPRRGCPIVVSYGETETDEFKRQSD
DFLRDWLALGYPGRYIPMPGTNHYDIVLTLNEPASALTQAIFALMGLAPPPTPSIR
>SEQF2266_AEE65727.1 MarR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDTPDLETRAAPEDHHALRLWLRMLTCCNLIESEIRSRLRTEFDTTLPRFDLMAQLQRAPKGMKMGELSRHMMVTNGNI
TGITDQLEKEGLVVRTKVESDRRSSVLKLTPQGKRTFARMARAHESWVTGMLDDLPEASRHAMYKALGELKLQVVAHRAL
AQRDGAS
>SEQF2266_AEE65728.1 hypothetical protein BPTD_0235 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISLSVPGGNFYLAMALSLFCLSTLLTWAVTLAANRGARRWLAAHRRLGPALMVLLAVAGAIFPYQHFSQWRQAQREARE
QTARRAVLEAARRVDGIDMPAGTELRLAEPGRLDSFQGADFPVPAHVAGLRVTRLVRHGAAPGGRQGWSVTLDGNQRIDG
WLCSRGHQVELAVRDGTPAFAGCHLAAGNEIGGAAVPPGAWVAARQPGPWLLRTEGSDPLDVGRLPLLKVDMTLDDRRQV
AGFEGLLARELTLGEMTYPTGTRVASAPAGLAQAQAGDLLFSPSRGRAARRGAGTEIVAGKSVLQAPDGTVRAVLANRDA
GVLDFAAVRMAP
>SEQF2266_AEE65729.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65730.1 hypothetical protein BPTD_0237 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVIELIYDTLDPDVAKYLKNNKPAPGIHWHRQLSEDLGARQLVSRCFEVVGMAKTCHSIRELRDRVAEHYGHNTVQLTLT
LPRSQR
>SEQF2266_AEE65731.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE65732.1 putative 5(3)-deoxyribonucleotidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLILLDQDGVLADFEHAFIDAWRKRHPDIEPVAFEERKSFHIREDYAPELRGLAEAIYTAPGFIRDLPPVPGAVEAFREL
LALGMDVRICSSPLMQFENCVAEKYLWVERHLGRDATQRLILTRDKTLVQGDLLIDDRPVITGAARPRWRHIIYDAPYNR
DQTDRPRLDWRNWRNVLAGELYRSDA
>SEQF2266_AEE65733.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLNSDALRLFLAVVDAGSMRAAAELLGHTASGVSRGLARLEAELGVTLLTRTTRRMELTEEGRQFQQKARAILLALDEA
QECMRIRHQQPAGRLRVDASAPVMLHCLVPHVEEFSRRYPEIQLELTSNDRIVDLIEHRSDVALRAGVLSDSSLHARAFK
PSTLLVVASPAYLARHGKPRDVAALRRHRLLGFTQPETLNRWPLRHDGGSTFVVEPDIGASSGETLRGLALAGAGIACLS
DFMLRADLASGSLVRLLESADNGYRQPLHAVYYRNTQLARRIACFLDFYAERM
>SEQF2266_AEE65734.1 transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIALWALAAGAFGIGTTEFVIMGLLPEVGADLGVSIPQAGLLVTGYALGVVVGAPPVAILTARLPRKTLLLGLMLIFTL
GNLACALAPGYGALMAARVLTSLAHGAFFGVGSVVATSLVRPDKQASAIALMFTGLTLANVLGVPFGTWLGQAWGWRATF
WAVTAVGIAAMAAIMYWVPASRGQHQADLAGELRALARPQVLLGFAMTVLGFGGVFTTFTYIAPILTGVSGIAAAAVSPI
LLLFGVGLVAGNTLGGRLADRRLMPTLVGSLAVLAAVLAAFAWTAHHSIAAVATVALLGAAAFATVPPLQMRVLQQAGGA
PNLASAFNIAAFNLGNAAGAWLGGLTIDHGPGLAATPLVAAAVTGGGLALALLSWSRDRRNDANQRAPALAARACESGQM
>SEQF2266_AEE65735.1 dihydroxy-acid dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHYRSRTSTHGRNMAGARALWRATGMKDGDFGKPIIAVVNSFTQFVPGHVHLRDLGALVAREIEAAGGVAKEFNTIAVD
DGIAMGHGGMLYSLPSRELIADSVEYMVNAHCADAMVCISNCDKITPGMLMAAMRLNIPVVFVSGGPMEAGKITSPVDGK
VIAKLDLVDAMIKAADPNVSDAEAEEVERSACPTCGSCSGMFTANSMNCLTEAIGLALPGNGTIVATHAWRKGLFEQAGR
LVVELCRRYYEQDDASVLPRSIATKSAFENAMTLDVAMGGSTNTVLHLLAAAQEAGVDFTMSDIDRISRRVPCLCKAAPA
TDKYHIEDVHRAGGILGILGELGRADLLDLSCGNVHSGTLGEAINQWDINGGAGEAAQKFFRAAPGGIPTTVAFSQDATF
LTLDMDRQTGCIRDKAHAYSQDGGLAVLYGNLAEKGCIVKTAGVDESQWVFTGRARVFESQEDAVEGILGDRVQAGDVVI
IRYEGPKGGPGMQEMLYPTSYLKSKGLGKTCALFTDGRFSGGSSGLVIGHASPEAAEGGTIGLVEEGDTIEIDIPNRRIH
LAVGDTVLAERRAAMQARGEQAWQPVDRERVVSQALRAYAALATSADRGAVRDLSQLKR
>SEQF2266_AEE65736.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPLEKDIAESKPQLAPHEHARAPVTALAVDYRDGEHVPRHRHRRAQLLYAIEGVMTVQAEAGIWVAPPTRGIWLPAGMA
HSIRMHGQPRVRTVFVAPRAAGHLPDRCCVLAVGPLLRELIVAATRVPPDWRPGGRDARLMALLLDEIRLEPALPLHLPQ
PDEPRVARVCRGILREPGAARGLAEWAAELGVTAKTVQRLFVRHTGMTFGRWRQQAGLLWAMRRLAEGVRVLDVALELGY
DSPSAFAAMFRRAVGEPPSAFAARREPPA
>SEQF2266_AEE65737.1 2-isopropylmalate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAHPATKYRPFAPFAADHAERAWPARRPAAAPIWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ
TDFDFVRKLIDERRIPDDVTIEALTQSRPDLMARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQI
RALADANPGTQWIYEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDC
IVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGERTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLP
IDVFHPYAWLDQD
>SEQF2266_AEE65738.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAIAKDPSPRRAPAFPAPRQLSYLDLLTRQVQSAPGEMAALATDYPAGTVSSLHRHDRGQLLYAMSGVVTVITDLGSWV
VAPGQALWIAPGVLHQTRGFESVAIRSLYIDPAHADGLPAACQTIQVSPLLQALILEAVKLPPQDAGSERAGHIRALILD
EMRHVCAAPLYVPMPRDARLARICQALLRDPANAGSLDAWAAYGGLSRRNLTRLFRAQTGASFNAWRQKVLLMEALARLS
RGEQITAVALDLGYGSPGAFTAMFRRALGVSPREYFRWTEAPQRAD
>SEQF2266_AEE65739.1 putative acetyl esterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTAALPYPLDPQIQRFVERMQADSAAHPRRDLVPVEQAHAISEAVRRPWAEGGPQMARTREIHVPTPHGPVRLRVYTPR
AARPGPALLYVHGGGWVLFSLDTHDRLMREYAERAGLTVIGVDYTRAPEARYPRAIEEIVGVIDWLDAHGAELEVDRARL
CIGGDSAGANLSVAACLTLRERGAAPLAGMVLNYGVYDANLFRDSTVKYGGGEYLLSTQQMVWFYWNYLRAGDDPRDPRI
SPVHADLRGLPPAFMAITELDLLHDTNQDMAARLREAGVDVQAKVYPGTVHSFLEAVSLAQVSVAAFDDTAAWLRAVLRP
DAAAAAIHTGEHQP
>SEQF2266_AEE65740.1 extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNYRHIRGTLRALLLASAAIATLAGAPAQAQTRGGTLRAIVHPEPPILITAINSQSPTQFVGGKIFQGLLTYDADLKPQP
SLARAWRISPDGLVYTFELQPDVKWHDGKPFSADDVVFSIDKLVREVHPRTKLILNAYVESVRAVDPATVEIRLKEPFAP
FISMFETGTMPMMPKHLYEGTDYRNNPANQHPVGTGPFKFKEWVRGSHIALVRNDEYWKPGLPYLDGIRFQVIPDSASRA
VAFEQANVDLVYGDDVDSVDIKRLRALPGVQYTTKGWEMFGPMGLMVLNQREAPFDNVLVRRAVMHALNRDFIVKNIFFG
MGRVPTGPFSSATLFHDKDLPVYDYNIKKARALIKESGVDVGQRTLRLLAFPYGANWERVGEYTRQTLEQLGFKVDIQAT
DAGGWASRMSQWDFDISFNHPYQYGDPVLGVQRLYLSSNRVKGTPFGNNQGYHNPKADALWQQAARSVDPAERQKLYSEL
QRILVDDAALGWLLEIDYPTLYRGNVHNLVTSAIGVKESFDTVYLDAR
>SEQF2266_AEE65741.1 putative 2-hydroxyacid dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLIAIASQAPDLLRLPPALRALDPSIDVVVWPDPRCAAAEVAVCWAPPPGALAAMPALRLLHTVSAGVDNVLAAPGLPD
VPLCRVVDAELNLGMAQYILWGALYFSRGFDQARASQAAGQWRRPDRYGQPPLRVGLMGLGAIGMAALPLLRAAGLPVTG
WSRTAKRIDGVATHHGPDGLAPFLAASDILVNLLPLTESTRGLLCAATFAGLPPGAALIHCGRGAHLVEADLQAALADGR
LRGALVDVYAQEPLPPQHPLWRCPSLVITPHMASVAPFERVAGQILENLRRLNAGEALMNLVDPRRGY
>SEQF2266_AEE65742.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYTPPAYEERDRHKLHAWMRDWSFATLVTHGDQGLQATHLPFLLDPLRGPHGTLISHLARRNPQAADIQAGAQAMVVFQG
PHAFISPSWYRNRQTFPTWNYAAIHAHGQAAAIEDAQRIRAILTRTVQTYDTPLGGEWTFEAMPEDLIVPRLSAIIALEI
PIARLEGKVKLNQDKSPEDRAGVLAALENRRDPGSRGVARMMREALLA
>SEQF2266_AEE65743.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE65744.1 protease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVSLAILFVVITLRPDWLRLSGPAPATRAPAAAASGQAGASYADAVARAAPAVVNVYTTKHVNVPLVPLPDDPVLRQLF
GQVPGLSRREASTSLGSGVIVSAEGYVLTNYHVVEAADAIEVALADGRQAAAKVVGADPETDLAVLKLAGKLGELPVATF
ADKRAPRVGDVVLAIGNPFGVGQTTTQGIVSALGRNGLGINTYENFIQTDAAINPGNSGGALIDAHGDLVGINTAIYSET
GGSLGIGFAIPVDSARRVMEDIVRTGAVRRGWFGIEPQDMTPELARAFQLPREARGVIIAGVMRDGPAGKAGMRVGDIVQ
ALNGAPVIDTRGLLGQIASLQPGQQAVASVLRAGKPADRLLPACMPLRCPPWPAIRPG
>SEQF2266_AEE65745.1 hypothetical protein BPTD_0253 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTIHIRELADWLDGALQAARFKDYCPNGLQVEGKAEIAHIITGVTASEALLRAAIERGADAVLVHHGWFWRNEDRRVLG
PRRTRLALALGHELNLLAYHLPLDAHPQWGNNAQLARVLGLQAETGPDGAPRTCGADNLVWLGSAPGVQTVAQLQQRVAE
RLGRTPLVVGEPDRPVRRVAWCTGGAQGMLADAVDAGADAYITGEASESTVHLARETGVAFVGAGHHATERYGVQALGEA
VARQFGIRVEFIDIDNPV
>SEQF2266_AEE65746.1 large-conductance mechanosensitive channel [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKATGFIKEFRDFAVKGNAIDLAVGVIIGAAFGKIVDSLVKDVVMPLVNFILGGSVDFSNKFLVLSMPDGYTGPMTYAD
LTKAGANVLAWGNFITIIINFVLLAFVIFWMVKAIYFARRKEEAAPEAPAAPPEDVTVLREIRDLLKDKQGS
>SEQF2266_AEE65747.1 ubiquinol-cytochrome C reductase iron-sulfur subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQDTLVHDDDGAVDPNLPPDPSRRFWVTTACAVGGVAGVATAVPFVSTFAPSEKARAAGAPVEVDVGDLAPGQMRTVEW
RGKPVWIIRRTDDQLKGIKSQDGLMADPNSERPGFTPAYAKNEYRSRKPELFVCVGICTHLGCSPTAHFETGGGAGMPGN
WQGGFLCPCHGSTFDMAGRVYKDKPAPDNLEVPPYQYLSDTRIIVGVDEDNKA
>SEQF2266_AEE65748.1 cytochrome B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGEKTVETTGLLGWLDQRFPVTSTWKAHLSEYYAPKNFNFWYFFGSLALLVLVIQIVTGIFLVMHYKPDAERAFQSVEY
IMREVPWGWLVRYMHSTGASMFFVVVYLHMLRGLFYGSYRKPRELVWIFGVAIFLCLMGEAFFGYLLPWGQMSYWGAQVI
VNLFSAIPFIGPELSIWIRGDYVVSDATLNRFFSFHVIAIPLVLIGLVAAHLVALHEVGSNNPDGVEIKKGPKDKYGRPK
DGIPFHPFYTVHDIMGVAGFLIIFAAIVFFGPEMGGYFLEYNNFLPADPLKTPPHIAPVWYFTPFYSMLRATTDVFTWVL
AGAAILGAIALLLRAKGAMRIVAPVILVVVAVLLRTIDAKFWGVVAMGGAVVILFFLPWLDHSPVKSIRYRPTWHKWLYG
IFIVNFLVLGYLGTQPPSDAFNLTSQIGTLIYLGFFFLMPVWSRLGTFKPVPDRVTFHAH
>SEQF2266_AEE65749.1 cytochrome C1 precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIKKLIGAVALMLTCTATLAAEGGFPLEKAPDRINDVASLQNGAKLFVNYCLNCHSAQSMRYNKLQDIGLTDQQIQDSLL
FTGDKVGDLMKIAMTPQDAKKWFGTTPPDLSVIARAKSVNAGPSGADYLYTYLRTFYRDTSKATGWNNLAFPNVGMPHAL
WDRQGPRELTTVAVHQVEAADGTRNWERVTTVYDAQGYATAKTEPLADYRGHGSLETRFKAVNPAQSADYDQDVADLTAF
MSWMAEPVQLYRKQLGVWVLLFLGLFLVVAWRLNAAYWKHVR
>SEQF2266_AEE65750.1 stringent starvation protein A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMVLYSGTTCPFSQRCRFVLFEKGMDFEIRDIDLYNKPEDISVMNPYGQVPILVERDLVLYESNIINEYIDERFPHPQLM
PADPVMRARTRLFLYNFEKELFVHVCALEDRSAKPDDKKMVQARQSIRDRLAQLAPMLLKNKYMLGDEFSMLDVAVAPLL
WRLDHYGIELPKNAAPLQKYAERIFSRPAYIEALTPSEKVMRR
>SEQF2266_AEE65751.1 ClpXP protease specificity-enhancing factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGETSTKPYLIRALHEWCTDNGYTPYITVQVDEHTMVPVAHVRDGQITLNVGTLATNKLSLGNEFIEFQARFSGVTENVY
VPVGAVSAIYARETGAGMGFEVQAYEAPEHADAAPPPPESAEAGDAAASPAGDDGDGDEPKRPHLTIVK
>SEQF2266_AEE65752.1 hypothetical protein BPTD_0260 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKSEVLRIWKADIDLPRRMIYLPEAKAGAREQPITAALAEFLDAF
>SEQF2266_AEE65753.1 hypothetical protein BPTD_0261 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGILTVTGDEIEQVTRKKRRQAQAKVLKALGIRLQIRPDGTLLVFRTSLGIPH
>SEQF2266_AEE65754.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65755.1 hypothetical protein BPTD_0264 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRHALATALMVSVTLAGMSAAHADGKTREQVRAELAAAKAAGQVTFGELDYPAPAAAPAAGKTREQVRAELAAAKAAGE
VTFGELDYPPAK
>SEQF2266_AEE65756.1 adenine phosphoribosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTDYAELVRRTIRSVPDWPTPGVTFRDITPVLQDPRTFRVLIDLFVYRYMRQRLDLVAGVDARGFIVGAVLAHELNLGF
VPVRKKSKLPYRTVAEEYSLEYGNAAVEMHTDSVRTGQRVLLVDDLIDTGGTMLAAIKLLQRLGANVVEAAAIIDLPYLG
GSAQITATGTPLYTVCQYQEGD
>SEQF2266_AEE65757.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLWRLLFRLYARRKGALALALALSLLTVAAGVGLLGVSGWFLTGAALAGAGAVFNLFVPSSLVRGLSFIRIASRYGERL
AGHAATLRLLADLRASVFRSLVRLTPRQLARYRGGDLVARLTSDVDALDTVFLFVLAPVAVALAGGAILTAVMGAWIPAA
ALVVAAALLLCCAVAPWWLARAGRRPGAAVQESAAALRAATLDAVEGHADIAALHAGAQARAQFADACEQSARARAAQVR
IAARGQWLAQLAAGAAVLAVLWFGLDGLAAGELGGPLLAGLLLATIGIFEVAGPVMRGVSRLGAAVAAAARIGEIAAREP
DLRDPAAPRALPPAGELALEDVTFAYPVPDAAPHPVLDGASLRVAPGQRVAIVGASGAGKSTVLQLLLRLEDPQRGAVRY
AGCDVRECAQAELHRRVALLSQDAPLLLGTVRTNLLIGDAQADDAALWRALDAARLGEVVRGLPHGLDTWIGETGAGLSA
GQARRLCLARALLTGASAILLDEPTAGLDAATEAELLADLARATQGRTVVLATHARLPPGTVDTVYTLQAGRLHRAAPM
>SEQF2266_AEE65758.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGASGIEHDPAAALNKPPREHSRWLAMRARAARVPLAVAGAAPLIGGVLLVIQAWLLARVLDQAIVQGAARAELATSIV
AISALMLARAALAWLGERAGAAAAERIKRQVREALFARLLALGPQWSRQRASGELASAMVEQVEALDAFFAKYLPAMGAA
AVLPVAFAVVVLPVDVITGLLLLVSAPLIPLFMALVGWGAEAASRRHLQAFARLSGFFADRLRGLATLKLYGRAEAEEQS
VVAASDALRQRTMAVLRIAFLSSAVLEFFAAQGVAGVAVYIGLTYLGFLDVRASVLTLQGGFFCLLLAPEVYGPLRQFAA
HYHDRAAARAAVAQIARTFDGLPSPGVEPAPPAQAPALARGAARLAASGLTVTQPGRPAPVLREAALQLDAGAHVALRGA
SGAGKTTLLELLARLRDGAGAIALDGVPLADWDEAALRERVVLIGQRPYLYAGSIADNIRLARPGASAALVEEAARRACV
MEFAQALPRGLDTPLGSRGHGLSGGQAQRVALARLFLRDPGLILLDEPAAHLDAATQARVLDEVLAFAQGRTLLLATHAD
AVARRLPRQWMLEQGRLRELQPA
>SEQF2266_AEE65759.1 hypothetical protein BPTD_0269 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWYFSWILGLSLACAFGILNAMWFELREGHAHDPYKKPADE
>SEQF2266_AEE65760.1 cytochrome D ubiquinol oxidase subunit II [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSLIPFDYATLRVLWWLLLGALLIGFAVMDGFDLGVAALLPLVAKTDVERRVVLNVVGPVWEGNQVWLITAGGAIFAAW
PLLYAASFSGFYLAMMLVLIALILRPVGFKYRSKMEGTRWRSRWDAVLCFCGVVAALVFGVAMGNIILGVPFGFDAATLR
PEYEGHFYQLFKPFALLAGLVSVAMMVMHGGVLLAWRTHDPVSSRARNWGRLAALATAALFVAGGFWVAYGLDGHVITSA
VDMHAPSNPMLKTVELQAGGWMANYEKWPLTWIAPALGVGGALLAFVLLSARANVLAFLASSVSIAGIILTVGFALFPFI
MPSSSRPGAGLTVWDGSSSLLTLWIMLLAVAFFLPIITVYTAWVYRVMRGKVTEDSVDGTPNSY
>SEQF2266_AEE65761.1 cytochrome D ubiquinol oxidase subunit I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAVRAGLPSGSVSMIDLDVVNLSRFQFAATALYHFLFVPLTLGLSFILAIMESVYVMTGRQIWKRMTMFWGTLFGINFA
LGVATGVAMEFQFGMNWSYYSHYVGDIFGAPLALEGLMAFFLEATFVGLFFFGWNRLSKVGHLVVTWLVAFGTNFSALWI
LIANGWMQNPVGAMFNPDTMRMEMTDFAAVLLNPVAQAKFVHTVSAGYVAGAMFVMSISAWYLLKGRHIDLAKRSMAVAA
SFGLASALSVVVLGDESGYLTTEHQKMKIAAIEAMWHTEPAPASFNLIAIPNQEERRNEFAISIPYVMGLIGTRSLTTPL
LGIDDLVRRAEVRIREGITAYEALQRVRANPKDVDARMLFERTWPDLGYALLVKRYQPDLSKATDEQIAQAALDTVPNVA
PLFWAFRVMVAVGFYLILFFGVAFWLASRGRLDSRPGLLKVALWSLPLPWVAIESGWFVAEYGRQPWVIEGVLPTYYAAS
GLTITDLAISLAIFLVLYTVLLVIGVKVMLHAVKAGPKGEASEPAGRRADPVQAAVDAY
>SEQF2266_AEE65762.1 hypothetical protein BPTD_0272 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALSPQTERFVLHFGEMGSRWGVNRTVGQIYALLFLSPKALHADDIAEALGFSRSNVSMGLKELQSWRLVKLMHQVGDRR
DYFETPKDVWEIFRILMEEKRKREIDPTLTLLRDTLLERPADEAQVYAQQRMHEMLELIELSTGWFDEVQRLPPETLQNL
MKLGSKVQKVLGFAGKLRGKD
>SEQF2266_AEE65763.1 hypothetical protein BPTD_0275 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQQLIRSLVLAAGLALLGGAAAPALADYPDRPVTLVVPFPPGGPTDAMARRLAEGLKTQLDQTVVVENRGGAGGNIGAEL
VAHAKPDGYTLLFGTSGPLAINISLYKKQNYDPRTSFAPIVRIGHLPNILVVHPSVPANNVQELIAYAKANPDKLSYASS
GNGASSHLAGVLFNRMAGTRILHVSYKGTGPALNDLLGGQVSMSFTDILTALPHIQAGKLKAIGLASAQRSQALPELPTI
AEQGLAGYDVSVFFGIVAPKGTPDAIVQKLNAAFIAALDAPEVRDTLRKQGIVPAPERTPQALAGFINEEVDKWGELIRA
AQISLD
>SEQF2266_AEE65764.1 hypothetical protein BPTD_0276 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVAALPPGALQGCRVIDLSRVLGGPYCTQILADHGADVLKIEPPGGDETRGWGPPFSGQTASYFIGVNRNKRGMALDLS
QPAGQELLRGLLADADVLVENFKPGTLEKWGLGYDTLSQAFPRLVHCRVSGFGADGPLGGLPGYDACAQAMCGLMSVNGE
ADGPATRVGLPVVDMVTGLNAAVAVLLALQERQRSGLGQFLDITLYDCALSLLHPHAPNYFYSGRVPTRTGNAHPNIAPY
KTLPTGAGPIFLAVGNNRQFAALADALGAPQLAQDARFASNAERLAHRDALCAALTELLRPHEAASLAERLLRLGVPAAA
VLDVAQALDHPHARHRGMLLEAGDYRGIASPIKLSRTPARLRSVPPALQEPAGA
>SEQF2266_AEE65765.1 gamma-glutamyltranspeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLRTLLAALCAAAICQAPAWAREAPGVAREDVNPEIASARSERAQAHAQRYMIATANPLASEAGYRILRAGGSATDAII
AAQLVLNLVEPQSSGIGGGAFMVHYDRGAGELRVYDSRETAPAAARPDRFLREGKPLSYAESVNNGRAVGTPGLLRGLEL
AHRQHGKLPWQALFEPAIAMAEQGFAVSPRLHESIAGDKALAAQPAAARYFYGPDGQAWPVGHRLRNPEFAATLRSIARE
GADAFYRGPIARDIVAAVRAHPTPGDLAEADLAGYRAVVREPVCGLYRGYRLCGAPPPSSGPLAVLQMLGELEQYPLARM
RPGSVEAVHYFSEAGRLAFADRDFYVADPAFVDVPVRALLDPAYLRQRGALIRPDRSMKTALPGDPQGLLAERARDDAIE
VPSTSHLVAVDAAGNVVSMTSTIEAAFGSKIFVRGFLLNNEMTDFSSSYRDPEGRLVANRVEPGKRPRSSMAPMIVFRAG
KPVLALGSPGGSAIINYVAKTLVGVLDWKLDVQQAIALPNLGSRNKETELERGTALEALAPALRRMGHEVRITDFPSGIQ
GIVIGPHGLAGGADPRREGLALGD
>SEQF2266_AEE65766.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLRHIEIFEAIRRTGSLTEAAAALHISQPAASKLLAHAEAQLGFKLFERVKGRLVATREAEILAPEVARLNQDLGSVRR
LAASLRDRPHGHLRLGCAPALGLGLLPGVVRASRDAQPGITFDIHTHHSAELVQGLLAHELDLAITFDANNHPGLTRTSL
GHTELVHLSRLPGAGTTRLQELGGETLIVLDARDASGSLLQMALDAQGLAPRVAIQVQTHYVACALAEAGCGDAVVDAIT
ARAMLRPGMALRRLEPALRVPISVMTRSQDALSTLHHDFIERLRQACSVLQAQPAPQPE
>SEQF2266_AEE65767.1 hypothetical protein BPTD_0279 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKVRTLVQAIAVATGLVAAAGAQAADAYPSKAIRVIVPFAPGGSTDIIARLVTQRMSQELGQPMVVENKGGAGGAIGAS
EAARAEPDGYTLSIATVSTMAVNPACRPKDLPYDPIKDFQPVTNFANTANVVAVNPKFPAKDFKGFLEELKKNPGKYSYG
SSGTCGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVP
TFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQGSAPSGNTPEEFAKEIKEQYDWAQDVVK
KQNIKLD
>SEQF2266_AEE65768.1 hypothetical protein BPTD_0280 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSENSSLRRDAEAPLLSIFLPGSMSVALLVLPDFMLVALGWALRHKLGFSREFFAGTERMVYFVLFPALLFQSILRTPIS
AGHAMQLLQATAALMACGVALAWLAGPVLRPAPVALASAAQCGYRFNTYIGLALAASLAGGPGQTIMALIVGFAVPMANV
AAVYGLARHSGNGLLRELARNPLLVSTLLSLACNLAGLSLPGPIDTVMARLGAAALALGIMCVGASLAWEGGKGHGRLIG
WMLAVKLAAMPSAALGIAWALGLPALETRMLVLFSALPTASAAYVLAMRMGGDGRMVAVLISLGTLASAATIPLWLTAAA
GLGAPN
>SEQF2266_AEE65769.1 fumarate hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTRTEKDTFGPIEVPEQHLWGAQTQRSLHFFAISTEKMPVPLVAAMARLKRAAAKVNAELGELDPQVADAIMRAADEVI
AGKWPDEFPLSVWQTGSGTQSNMNMNEVLANRASELLGGERGEGRKVHPNDHVNRGQSSNDTFPTAMHVAAAVEVEHRVL
PALKALRGTLAAKSAAFYDIVKIGRTHLQDATPLTLGQEISGYVAQLDLAEQQIRATLAGLHQLAIGGTAVGTGLNAHPQ
FSAKVSAELAHDTGSAFVSAPNKFQALASHEALLFAHGALKTLAAGLMKIANDVRWLASGPRSGLGEISIPENEPGSSIM
PGKVNPTQCEAVTMLAAQVMGNDVAINVGGASGNFELNVFKPLVIHNFLQSVRLLADGMVSFDKHCAAGIEPNRERITEL
VERSLMLVTALNPHIGYDKAAQIAKKAHKENLSLKEAALALGHLTEAQFAEWVVPGDMTNARR
>SEQF2266_AEE65770.1 hypothetical protein BPTD_0282 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPPTTLCLHLPDEAATENLARQLAPLVDGRRGGQPGGQIHLQGDLGAGKTAFTRALLRECGIQGRIKSPSYALLESYK
VSNLYFYHLDFYRFSDSREWLDAGFRDLLRDDAVVLIEWPERAAGLLPPPDLLISLAYADQGRDASLTAHTARGQTWLNA
IVPPPTARSLPAPPPADA
>SEQF2266_AEE65771.1 N-acetylmuramoyl-L-alanine amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTWPADEYTRVTLELDSELKAEHFTLENPHRLVVDIEGLSVNAALNDLVSKVRHDDPYIQGLRVAQNRPNVVRLVFDLK
QSVAPQVFTLKPVADYQYRLVLDLYPKVAQDPLMAILNKQSGPDVDDPLARVLDEIARNQPAPDQPAAPLARGQEPAPAL
PAPPIKPLPAPGRSASRKRMLTIALDPGHGGEDPGAIGRSGLREKDVVLRIARRLKTLIDAQPYMRAYLTRDDDYFVPLH
VRVQKARRVRADLFVSIHADAFIKPTANGSSVFALSERGASSTQARWLADKENAADLIGGVNLGSHDRQVAKVLLDLSTT
AQINDSLKVGSAFLDEIKKINRLHKNRVEQAGFAVLKAPDIPSILVETAFISNPKEEALLRSAAHQEKLAQAMMTGIDRY
FTANPPLARVGDVS
>SEQF2266_AEE65772.1 hypothetical protein BPTD_0284 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDFFNMVLHIDQTLGIWVEQYGVWVYLVLFLIVFAETGLVVLPFLPGDSLLFIAGAFGATGHMDPVLTAALLIVAAISG
NTVNYTIGRYIGPRVFSMNLRFLDRNALMRTHAFYEKHGGKTIVMSRFIPVIRTFAPFVAGVADMRLARFQLFNIGGALL
WVISLVAAGYFFGNIPLVREHLNTIVLIGLGAAIVPVVIGALVRLLQVRRGQ
>SEQF2266_AEE65773.1 DNA mismatch repair protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDRRPIATLPDLLISQIAAGEVIERPASVLKEILENAIDAGARAIEVRLEGGGIRRIAVTDDGSGIPPEELPLALTRHA
TSKIRSLDELESVASMGFRGEALASIASVADLTIISRTRGAEHAWQIDGGSLQVSPASGPPGTTIDVRQLFDRVPARRKF
LRSEATEFGHCVDAMERIALAHPEVAFRLFHHDRAQRQWLPADHGQRIRDVLGAEFVGHVLPVLAAAGAIALMGMVTRPT
AARARADRQYLYVNGRFVRDRTVSHALRSAYADVLHGDRQPAYVLYLDIDPGAVDVNVHPAKHEVRFRDSGAVHRFVSQV
VGQTLAQTGGAEAVPAGVPDGAAPDTAYAGEPAAAAPGLAEPRAPYPAAYPSPGQSPYQGSPARPHTQVPFRLHGEPAGI
PATDWQSLYRPLPGDAAPAATALRAAPATPLPTADEHPLGQALAQLHGIYILAQNSRGLVLVDMHAAHERVVYEQLKRAL
DDRALPRQDLLVPVVFHAAEKDVALVEEHETQLNELGFEMRPSGPASIAVRSVPALLARGDIESLARAVLRDLGAVGVSR
LLTEQRNELLSTMACHGSVRANRRLTLEEMNALLRQMEITERADQCNHGRPTWVQWSVNDLDKLFLRGQ
>SEQF2266_AEE65774.1 tRNA delta(2)-isopentenylpyrophosphate transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPRAIICLAGPTAAGKSASTLALAQRWPLEIINVDSATIYRGMDIGTAKPSAAERAQVPQHLLDIRDPAQSYSAAEFRA
DALRLIAEIHARGRIPLLAGGTMLYYKALREGLDDLPQADPALRAELEARAARLGWPALHAELALLDPATAARLSPNDSQ
RIQRALEICRLAGQPMSALLQGERRGDAPSPYRYVTLSLEPSERAALHARIAQRFDAMLAAGLVEEVRGLHARPDLHPGL
PSVRCVGYRQMWSYLDGDIDLDTAREQGVAATRQLAKRQLTWLRAQPERVIIDCLAGDAVARTVDAMARALPD
>SEQF2266_AEE65775.1 phosphoribosylaminoimidazole synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNQHSAPLTYRDAGVDIDAGDALVDRIKPLAARTMRPGVLAGIGGFGALFEVPKKFREPVLVSGTDGVGTKLRLAFDWN
RHDTVGIDLVAMSVNDILVQGAEPLYFLDYFACGKLSVDTAAAVVGGIARGCELAGCALIGGETAEMPGMYPDGEYDLAG
FAVGAVDKSAIIDGKSIQPGDVVLGLASSGAHSNGYSLVRKILERAGARPDQDFHGQPLVDVVMAPTRIYVKQVLAALDR
HGPAIKGLAHITGGGLLDNVPRILQPGMAAQLQRDGWEMPKLFQWLQQQGSVADAEMHRVFNCGIGMVLVVAADQADAVA
ATLREQGEIVNRIGEIVPQQDGMAQTVVV
>SEQF2266_AEE65776.1 DnaA regulatory inactivator Hda [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRQLLLDVLPAPAPALNNYIAGPNGQALAAAHALTAGRAIYLWGPAGCGRTHLLRGLSARPEAIYIDAARAAQSLRELA
EADSTAPMPRLVAVDDVHRMDDARQAGLFALYNRWRESAATGRAFALAVSGDRAPMSLPLREDLRTRLGWDLVFRLDPLS
DADKLAALTAQAAERGLQLAPEVINWMLTHHERDIRKLAALLDALDRYSLATGRPITIPLLRAMLADPHSQAT
>SEQF2266_AEE65777.1 hypothetical protein BPTD_0289 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTRRLALFDLDHTLLPLDSDYQWADFLARTGRAGDPAEARRRNDDLMERYNRGELTAEQAAEFMLGLLAAHSPVELAAW
HEEFMRDVIRPSLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGK
VVRVNQWLAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSPGLREIAQARGWQVIDLFDHLEDAKS
>SEQF2266_AEE65778.1 poly(A) polymerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MITETIRKFVGRLFAPALRGPQRIGAERHGIDRRNVSRHAIKVCDVLRQHGYEAYIVGGAVRDLIVGLEPKDFDVATNAT
PEQIRPLFRRARIIGRRFQLVHVVFGQEIIETSTFRAPASDDQETDEHGRILRDNVFGSQEEDAARRDFTMNALYYDPHT
EEVIDYHQGVQDLKKRQVRIIGDPVKRYREDPVRMLRAVRFAAKLNGSIDTATRQPIRTMASLIENVPASRLFDEMLKLL
TCGHAMDCLRQLRNDGLHHGLLPLLDVVLEQPGGENFVELALERTDARVRAGKTISPSFLFAALLWQLVDVRWKQLRAQG
EHNIPALVQAADSVLDEQTEKLAIQRRFSSDMREIWFMQPRFERRAGKTIYRMLEQPRFRAACDFLQLRAAAGEFDSVLA
QWWMDLANGDDATRAEMIEETAHLPRETGDAPAQKRRRPRRRPSNRPREPQ
>SEQF2266_AEE65779.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNGSPASTLAYVGLGASLGDAAATLRSVLAELAAAPGILACKASRLYRTAPVEAQGPDFVNAVAALDTTLAPLDLLDLLQ
ALEQRHGRERPYRNAPRTLDLDLLLYGEQAIDHPRLSVPHPRMHERAFVLAPLCELVPALRLAQGDCAALLAALEDQAIE
PLR
>SEQF2266_AEE65780.1 hypothetical protein BPTD_0292 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKRIWGTLLAAAMTVGSGAAHAGYPDKAVRIVVPFAAGGGVDALARPFAKELGDILGQSIVVENKPSNTGQIGATDVAR
AAADGYTLLLSSAAFATTPAFYPQVPYDPVKDFSPVMIMAAAPQVLVASNRFKAASLPDVLAQARQSDRINFALSASTGI
QALATAMLAGQGGVTFMTIPYKGAGAAFMDLISGEVDLMIDNPASSLVHVRAGKLRVLATTGSKRMAILPDVPTVAETLP
GFEARNWFVLAAPQGTPPAVIQKLNEASARALNTPAMRQMLERDGIDLVADSPAHAAAFLQDEIAKWGKVVKEGNLQP
>SEQF2266_AEE65781.1 hypothetical protein BPTD_0294 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSIEMPAPVMPIEPAELAGASPYPLAIDQDFCLIRWMAAISRACGALATVALLLMALSMCYEIFSRYLFNAPTAWATEI
SGYLLVATVFFGLAAAQASNSHVQVELWIDRLSAPVRLRVELLCQWLALLFCVVLGWQMASFNVREYLNDTRDWGLLSTP
QWMPELAVSVGMVVFCMSILVDIYRLSPPAQAWRRWLTPALLALLAAALVALGANAVPMAAGGRFDWGMALIVAALLACA
WAWSGVRTLAHVVLVVGGCAVLYGLARGQSLGWVAFLLVASMMLLLFLGVRIGVALGLVGLFGVYFLLSRPQLSLLAERA
WSSTNTFTLTAVPMFIFMGGLLLRSGITAGMFDALVRWFGRAPGGLAHASAGASAVFAAVSGSSLATAATLGKVACPDMI
ERGYSPRLTYGVAAAGATLGILIPPSIPMIIYGTTVGASVTHLFLAGMLPGLLLMACFMLGALVWALAVPGSAPVARAYT
LREKLSASRGMVPFVAIIGAVLGSMYTGVATPTEAAAIGAVSAFVLCLVRRQLSWRALFEIAHDSAKVTALLLLIVVGAG
IFSWVFDYLRLPREVVNLIQGADLSPALIVAAMVLAYLVLGMFVESIAMMLMTLPVTYPIAMSLGLDPIWFGVFLVLMIE
LGLITPPVGMVLFVLRSMNEKARFTDIIRGALPFVLIILLFLCLIYIYPQIVMWLPQQVK
>SEQF2266_AEE65782.1 putative solute-binding periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQRFPLPRGFQAALAAAALCTASWSGAAAAQTYDLTMAVITSPGDGYSILTASVPERVAKATDGKVKVTVSDSLVPPAQ
IATAVREGRVDMSAALHTYLAADEPRMGIFNLPGLINNIQEYKQVCDAFWCEDTRKIWKDKWNAIVLAEGAWCTQQLFSK
DPIHKVEDFKGKRLRVHNPQTAEVVNALGGKPVAMPTTEIFPALERGVIDGLFISTCVGGSLEFWRIAKNVQNWSLGPIN
GWAILANPDSWQKLPADVQKQVQGAMDALQQEAFGNYDTFVSNAQQEMMKKGVTFWVAPEEERAKLMQQQYIGPSYEAWN
KRAKQVGFDGPAYLDRVRTTLGKSASN
>SEQF2266_AEE65783.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPFPFCNTNRMTSPAAPEGEFKVQRVASVLRHSVTESIRNAILVGRFRPGERLPERELCEMTGVSRTLVREALRQLESEG
LIVVIPHRGPVVERLSPEQARGIYQVREELEGLACQLFAEHATEPQLAALQEAFQALKRALTRGTPLEQIAAKNAFYQQL
LDGAGNEALTTTLRLLNSRVMLLRSTSMQAPGRAKHSVAELSNLLQALVARDGKAARKAGSLHVRNAASVAIAILQDSLA
DAAATAE
>SEQF2266_AEE65784.1 4-carboxymuconolactone decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALRPEFQTEQFQKGLAVRRAVVGDAYVDKSLNSADDLTASLQKLVTEYCWGEVWTRPGLERKTRSFLNLAMLIALNRPN
ELRLHLRGAINNGVTKDEIVEVVLQAAIYCGVPAALDAMKAVREVVETMEKEGAFA
>SEQF2266_AEE65785.1 beta-D-hydroxybutyrate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPARPLHGRCALITGAEAGLGLAIADTLARSGADIVMHCLQANESARQAQAALAREHGVRVLLLQADLRDVDQIEAMAA
QALAELPRLDILVNNAVVRHFEPAHELPRAHWDESLAVNLSAAFHLARLALPGMLAQGWGRIINLSSVYGAGAAANRVGY
VTTKTALLGLTRALAVETAASGITSNAVAPGTAPTPAIVGRITEIARRDGVAQEQAEREYLAARQPTGRFVAMENVAALV
AFLCSDAGRDITGATLPIDGGWTAA
>SEQF2266_AEE65786.1 hypothetical protein BPTD_0301 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65787.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQSEQVHTMKHHKRPYAGHAARTFQWQVSDDGKIATITLNRPERKNPLTFDSYAELRDLFRGLVYATDIKVVVLTGAGG
NFCSGGDVHEIIGPLTRMSMPELLDFTRMTGDLVKAMRACPQPIVAAVDGVCAGAGAMMALASDMRLGTPAARTAFLFTR
VGLAGADMGACTLLPRMIGQGRASELLYTGRAMNADEGLQWGFFNALHDPAELSGAALALAEQLAAGPTFAHGVTKKLLH
QEWNMGVDEAIEAEAQAQAQAICMQTQDFRRAYDAFVARRKPVFEGD
>SEQF2266_AEE65788.1 putative acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDLSWQDWPFFDPLHRELARELEAWCGPALAAIDHRDTDAACCALVRSLGQAGWLRYAVPAGPGGGWGGRLPKIDSRAV
CILRETLARHDGLADFAFAMQGLGSGAISLMGSDALRQQYLPPVARGEAIAAFALSEPEAGSDVAALACEARADGDGYVL
NGEKTWISNGGIADFYCVFARTGEAPGARGISAFVVDAGTPGLEIAERIDLIAPHPLARLRFADCRIPASRRLGEAGQGF
KLAMMTLDIFRASVVAAALGFARRALDEGLARARGRRMFGQTLADLQLTQAALGDMATAVDASALLTYRAAWMRDVQEVR
TTREAAMAKMTATESAQAVIDRALQMFGGAGVVAGTTVERLYREIRALHIYEGATEVQKLIIARELLKS
>SEQF2266_AEE65789.1 acid-coenzyme A ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEPSAHLDSFARDNLPPASEWPEFLLDGPDVAYPKRFNCAAELVDAMVRQGHGERVALRWRQDERIETMTYGQLQALTNR
IARVLVEDMGLVPGNRLLLRGPNNPMMAAAWLGAIKAGLVTVPTMPLLRAKELRQIIEKAQVQAVLCDARLKDEALHCAA
PAHEHYCPGLGQVMLFNDGAPDALDARAAAKPEDFPACDTAADDVCLIAFTSGTTGAPKGCMHFHRDVLAMCDLFPRHVI
RPGPDDIFCGTPPLAFTFGLGGLLCFPLRVGASAVLAEKLSPDTLLALIHDFRATISFTAPTFYRQMAALAPKYDISSLR
KSVSAGEALPDATRQLWRQATGIEMIDGIGGTEMIHVFVSSPPEEVRQGAIGKAVPGYVAEVVDEQMRPVPNGTVGRLAI
KGPTGCRYLADERQQRFVQQGWNLPGDTFLRDDDGYFFYQARNDDMIISAGYNIAGPEVEDALLRHEAVAECGVVGAPDD
DRGQLVKAYVVLKPGYEPDDALAAALQAFVKAGIAPYKYPRAIEFVDALPRTETGKLQRFALRRMAAEG
>SEQF2266_AEE65790.1 4-hydroxybenzoyl CoA thioesterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAEPFVSEVEVRFRHCDPAGIVFYPRYFEMINDFVEEWFDKGMGLPFHALHVDRHIGTPLASVQCDFSAPSRWHERLRQE
LSVRRIGGASFRADVRFLGPDDRLRLSADLTIVTVDLRSMRSTPLPDDLRARMQAFLSPQARDA
>SEQF2266_AEE65791.1 hypothetical protein BPTD_0308 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKILQPPDWLAPRGYSNGTLTEMAVGSKLVFVGGQVGWNGQQQFETDDFAEQVRQTLVNVLAIMAEGGAGPQHIVRMTWY
VKNKAEYVASYPEIGKHYRELIGRHFPAMTAVEVADLIEDRAKVEIEVTAVIP
>SEQF2266_AEE65792.1 hypothetical protein BPTD_0309 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIANALQLELDEATCVLSAAYAPTGENDTLPTWDTLVAAVQARGWPATVLDQISAIVFIEQCRDTAGPVEACIGEVRNG
TFELEVAEDRMSAQLTLRAPKGGQPVGESDLLAGLQAHGIVHGLIPEALRQALERGACEALEIARGTLPEAGEPARFESL
LDALKTRLSEDDENAIIDYRNLGDLTLVSAGTPLMRRIPATPGQPGTNVLGGPVAPPAVADPPFAPKLNGVEVDPEDPGL
LRAAIAGSPMLVQHGATVNSLVEVPAVDLSSGNIDFEGTLRVKGDITAGMHVRVSGDVVVNGTIEAAHVEAGGNVTVNGG
IIGSAEGVADSRGGSRMARIVSGGSVKARFIDNAQVRAEKNVAAEREIRQSTVTAGETITVGPPGSQQGVITGGTAHAYK
SVHAGTLGSMAGIPTVVRAGLNPHANAKRAALETRARELEEEKAKLEKLILFLHNNPAKNVNNMSERARQTHAKISADLV
ELQAEDARLAKELQPLETAMIVASRRFFGGVTLHLGVKVTEFLEDQVGGKAVLEQGELAIR
>SEQF2266_AEE65793.1 glutamate-1-semialdehyde aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTNAELFDRACRSIPGGVNSPVRAFRSVGGTPRFIQRAQGPYVWDAEGKQYIDYVGSWGPAILGHAHPEVVRAVQEAAV
HGLSFGAPTEAEVELAEMLIARLPSLEQVRLVSSGTEATMTAIRLARGATGRHKIIKFEGCYHGHSDSLLVKAGSGLLTF
GNPSSAGVPPEFVAHTLTLEFNNLAVVDAAFSQHGAEIACVIVEPVAGNMNLIKPAEGFLAGLRELCTRHGAVLIFDEVM
TGFRIGPQGVQGLTGVRPDLTTLAKVIGGGMPVGAFGGRADLMTHIAPLGGVYQAGTLSGNPVAVAAGLATMRLIGEPGF
YERLSAQTARLAQGLQERARAAGVPFSADAIGGMFGLYFGDRVPASFAEVSACDTEAFKRFFHAMLERGIHFAPSAFEAG
FVSATHDDAVIDATLEAAEQVFATLRA
>SEQF2266_AEE65794.1 thiamine-phosphate pyrophosphorylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTLRFPAGLYGITPEWDDTDRLLAAVRAAAAGGMTALQLRRKLADERLRAAQARALAPLCRELGVVFLVNDHWKLALDV
GADGAHLGRDDADPATVRAQAGAGLLLGVSCYNDLRRADALLAAGADYVAFGTVFASPTKPEAVHAPLQTLTEARARVLA
CPAPRPAVVAIGGITPANVSQVAQAGADSAAVISGLFEAPDIQAAARACAAAFSVNP
>SEQF2266_AEE65795.1 phosphomethylpyrimidine kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPDYPFFAVVPVLDSVTPPLVLIIGPVDPSGADGLPADAVSCARLGCHALAAVTALTVQDTAGIEEVHPVAPELLDDQA
RCLLEDMSVQAIKVGALLSAEAASVAAQIAADYSHVPLVLHLGQRTPLPQDAADQDDADDLLAATLELVLPQTDLVVVEH
VRLAQWQADGSIDTSGAPSPAHALLAGGAQWALVLGSPARPGHQVNMLVGPEGQTSTWPWQAPPDRNGDTGGVAAIAAAA
MLAQGMEMPRAVEQALAHAERTIAASFLPGMGRRLPNRVAQS
>SEQF2266_AEE65796.1 rubredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTWMCLICGWVYDEEAGLPDEGIAPGTRWEDVPPNWVCPECGARKEDFELMEI
>SEQF2266_AEE65797.1 hypothetical protein BPTD_0314 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDSHRPDADDIPDDDELSTDFSNQFLLAMPGVVEGSLAGTVIYICEHTRRGALGLVINRPTDLTLATLFERIDLKLEIG
PVKDEMVFFGGPVQTDRGFVLHAPAGDYTSSINLGELALTTSRDVLQAVADGNGPARMLVTLGYAGWGAGQLESEMAQNS
WLSVGADSHIIFDVAPEDRYPAALKLLGVDPVMLAGGAGHA
>SEQF2266_AEE65798.1 hypothetical protein BPTD_0315 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPEETLLAFDFGEKKIGIAIGNTLTRQARPLEIIFSETRAARFGRIGQLLQEWQPQRAVVGLPLTLDGQEQPASARARRF
ANQLHGHFGLAVELVDERSSSMEAQQLLGTHADDDAVAAAVILQRYLDTLSQP
>SEQF2266_AEE65799.1 aspartate carbamoyltransferase catalytic subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNPQLNRHGELIHLLSTEGLPRRIIEQILDLAATFVPAPGQEFPKLPLLHGKSVFNLFFENSTRTRTTFEIAAKRLSAD
VVNLNIAASSTSKGESLLDTIANLSAMQADLFVVRHGASGAPYLIAQHVAPHVHVINAGDGRHAHPTQALLDMYTIRHHK
GDFNQLTVAIVGDVLHSRVARSDIHALTTLGVPEVRVVAPATLLPEGLAQMGVRVCTDMEEGLRDADVVIMLRLQNERMR
GALLPSAHEYFKHYGLTQARLALARPDAIVMHPGPMNRGVEIASEVADSGQAVILDQVTFGIAVRMAAMSLVAGVRP
>SEQF2266_AEE65800.1 dihydroorotase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVRTVRIAGGRLIDPASGADARADLYLADGRIAAIGQAPAGFQAQQHIDARGLAVLPGLVDLSARVHGAGLAPLACEMQ
AALAGGVTRLVVPPDTDPPLDEPGRVEMLRHRAHQAGQAQLHPLGALTEGLRGERLSEMAALAEAGCVAFSQAGLPVADT
RVLWRAMQYARTFGLALWLRPLDPWMGRDGVAAAGAYASRLGLAEVPVQAETLALHTIFELQRATGARVHLMRLSSAAGV
ALVRAARREGLPLTCDVAAHQIHLTDVDIGFFDSRFRLDPPLRGQRDRDAIVAGLADDTIDAICSDHRPVGDTGKLLPFA
EAEAGASGLELLLSLTLKWAQRERVPLARALALVTSAPAAILRAATAAPPPCGELAAGAPADLCLVDLDAD
>SEQF2266_AEE65801.1 acyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLLRFVFRVFLVVPWVLFGLLCVTLVYRGLRQDQRARLNRCWSACLMRLCGIAVHVRGAPRLRGGVLWVANHVSWIDIF
VVNSVRATSFVAKSEIRAWPVIGYLAAGAGTLFIDRTQRHAVHAMGQSIHDCFARGDAVGLFPEGTTTEGFTTRPFHASL
FEPARAEGVDIQPVALRFMHRGQRSGFAAFVGEETLVANLWRVLGTTGLAVEVVFLEPLPTQHAEGHQPTRLELSHMVRN
AIAGEL
>SEQF2266_AEE65802.1 diadenosine tetraphosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKGNIWTIGDVQGCCAPLAELLAHPEIAGDTDSRFWFAGDLVNRGPQSLAVLRRIMAMGERCTAVLGNHDLHLLAAYAGV
RKPSKSDTLDEVLQAPDAVDLIDWLRFRPLAHYEAGHLMVHAGVLAKWDVAKTLALAGEVEQALRGPNWRKALQKMYGNE
PATWKDDHTGGKRMRVIINALTRIRLCTPSGHMEFATKVAPGAWPAGLVPWFDVPNRATRDVTVVFGHWSTLGLLMRPDV
ICLDTGCVWGGALSALRLHDRKLVQVKCKRFQDPNGD
>SEQF2266_AEE65803.1 hypothetical protein BPTD_0320 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTARRYLAREIYRSCAVVLLALLGLFTFFALVDDLDNVGDKFSMLALFYMQALALPTRLYDLLPIGLLIGAILALAGLA
QRNELVILRVSGVSGMRLLGMLWVITIPLMIGATLLSEFVTPAAEIKSGEADLTFRGKTGGGRLNSGYWFKEPTPQNGTR
IINIKTLLADGQVKDVTLYEFRSDLEMTALWTAPNGRFSRGDLVLTDVSETRIDEHAPSALADAKQPKEPPARVTKVPEL
KLDTTLSPERLLARVLTPERMSALTLVDYIEYLRHNQLQYDRQVVALWRKLVYPFTLLVMITIAAPIGFMQTRRGGVGAK
VFIGILLGVGFFMLNQLALNVGMLSRWPPWITALGPNLGALLLAFGALSMMEYRHAIARFMQHRWPWRKVPA
>SEQF2266_AEE65804.1 monofunctional biosynthetic peptidoglycan transglycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVLCIAILYQLWMFSLVVWYAYRDPGSSAIMRQELARLRERDPEAELKYQWVPYDRISNTLKQAVVASEDANFTEHDGV
EWDAIRKAWEYNQRQAERGRTKMRGGSTITQQLAKNLFLSGSRSYLRKGQELVLAYMIEHVMPKERILELYLNVAEWGVG
VFGAEAAARHYYNTSAARLGAGQAARLAAMLPNPRYYDRHRNTGYLNSRTATLTRRMRMVEIP
>SEQF2266_AEE65805.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE65806.1 hypothetical protein BPTD_0323 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAMPRHKLVVLTNPVEGREQEFDDWYMNTHMPDVMRVPGFVSGQRFTWAHAQAKPHAQTWRYLTILEIDTDDLQATLDD
LMARPGTAAMRMSDALAEQRLAYVFTAATPVFAPDGAGGITLRD
>SEQF2266_AEE65807.1 putative coenzyme A ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQTQPTPPAAAIDVHAAFGEMRHWTTGHIVARRAALSGSQTFLRNMADGRCHTYLDLHRQTNGIAQALAALGIGHGDHV
AVMLENCPEQVFSYVALGKLGAVSVPINTAAKGQLLRYYLDHADCTAIVVSDTLAAPLADIIAALPRLQRVIVLGQARAA
AAGLPDGVAVHPFPDVDGSDAAPRVPVRFDDLAYLLYTSGTTGPSKAIMITHACAHFWGEQNIRYRHFLPGEVDYVFLPL
FHANALLLGVTSALMAGTTVALARRFSTSRFWSDVRTAGATRFNAIGAVGNFLYSQPPDPRDRDHKVRLCSLAPPPPFVH
DFERRFGIKVLNGYALSDYCAATWSPLDAPPQKVFSAGLARDSVRVRIVDDDDFDLPADSPGEILLRVEQPWGTPLGYYK
MPEATLAAHRNGWFHTGDRGRLDADGYLHFTDRKKDAIRRRGENISAYEVEAIILGHPAVRQAAVYPVRSEFTEDEVAAS
IVLHDGQALTPEALVLHCRDNMSSFMVPRFVEFVAELPLTLTNKVEKYKLRARAEADPAALWDSQQHAGGTARAAATGG
>SEQF2266_AEE65808.1 hypothetical protein BPTD_0325 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPMPVHRAGAAGPDAVRRSLLAAIPGLMLGAVARAQPAAYPAHRVTLLVPYTAGTAADAVARFIAAKLTALWGTTVLVE
NKAGADGVVGTRAVLQAPADGHMVLFTGPPFLYNTEMLQTAPYVPLRDFQPVARVSSAMWLFAAGRQAPFANLAELIALD
KRQGRAADIAVSGSAAMAVATALKNATGARLNIVPYTSTSQAITDAAAGHVDAVAAAIAGVAPLVRSGMLNALGVSGPTR
SLAVPEIPTLAEAGAPGFGFVSWNAAFVRSGTPEAAIARLAEGMGAVAASAEFREFAREQGVEPAFMGPDAWPAEAADQQ
ARWSGLLREAGLIKPKQG
>SEQF2266_AEE65809.1 hypothetical protein BPTD_0326 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIENPAPILDQDPYVQAYPETRAFWEAAAQGRFVLPRCRDCGQSHWYPRGLCPLCGSTALEWQDAAGTGTLYSYSVMRA
APQPYAIAYVQLAEGPLVLTNIVDSDLERLRIGQPVRVAFQRTQEGRSAPVFVALAD
>SEQF2266_AEE65810.1 acetyl-CoA acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGGEQRETNLSIRGKAYIVGAFEHPLRYAPAHSVAQLHAECALGALADAGLTLADVDGYFCAGDAGASPATLVDHMNLRL
RHVDGTEIGGGSYLALIGHAAQAIASGKCRVALITLAGKPRSAGQATGTEARQPGPDRPASAWEAPYRWTVAGIYGNFAR
RHMHEYGTTSEQLAWVKVAASHHAQHNEHALLRKVYSVEDVLASPMIADPLHRLDCCVITDGGGALVLAAPEVARSLARP
RIRVLGCGETIRTNNGGHHADMLHTGAQRSGPAAFAEAGVTPADIKYASVYDNFTIMVIMQLEDLGFCEKGAGGRFVADG
NLISGTGRLPWNTDGGGLCNNHPANRGGITKAIEAVRQLRGEAHPSVQVPNCDLALAAGPGLVFGVGHSHATVILERE
>SEQF2266_AEE65811.1 metallo-beta-lactamase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLWLLGTGTPTPSLWRMCSGYLVRVGDEYLVFDHGFGAHHRMLELGVRATQVSHAFFSHHHYDHMGDYPRLLLTRWDQG
VGRIDDMDVYGPPPLKLITERLIGDDGAFGPDLISRTENQCSIDVYQARGGTGMRARPQPHLHELAADAVVRTPGWTVRV
APVNHFAPHLVSYGYRLDADGQSFVYSGDTGPSRALRELAQDCDVLVHMCHYVSGTAPSKTFAAFTMGHRELAELAAEAN
VRNLVISHVTEQFDHPGMRERIVREVGEIYRGNIFFGEDGMEIPFAGPRQTRLD
>SEQF2266_AEE65812.1 hypothetical protein BPTD_0329 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQHLHRPTRLMGAIAIITTAFALAGVPAQAGAAPSDQPLRIVVPYAPGGTGDVIARLVAKKLGEQSGQSVVVENKPGAAG
SIGASTVARAAADGNTLLLGYTSEMVINPIVQKGVSYDVARDFAPVALAGSTPLLLVANPTVGVNSIAELVALAKAKPNR
LSYASAGPGSPAHIAGALLAREAGIQLLHVPYKGGSQAVTDTVGGVVSIYFSGMPPAVPFVKNGKLTALGVTARQPSPAL
PDVPALAAQDYPRLDLAGWFGFFAPREVPAPVQAALHDRITAALAADDIRQALAVQGVETRPMSAQAFGDFVAAEQKKYA
RFIDELGIAAE
>SEQF2266_AEE65813.1 hypothetical protein BPTD_0332 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMHNKHSMVRRALGALALAWATAGAAMAQAPYPTAQAAGDALVDAIATSDDVAMARVLGANYRQVFPAGDHTQAIYRFL
AAWADRHDIQSEGDRRAWLAVGLSGWTFPVPMARGGQGQWRFDLQAGVAEMRRRTIGRNELVAIDGVRQLVQAQARYAQG
PGQGRYASRLVSRPEHRDGLYWPAADQADAPPFGPDALAMGADTPLDQAYAGYRFRVEAAPDGKDFRVVAWPAQYRRSGV
YTFAADASGQVLQRDLGGAGAVGMRTDLAGWQPVAQ
>SEQF2266_AEE65814.1 hypothetical protein BPTD_0333 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYRTDRLYSPPAWPVTRWLADPGRNVPDDIRQALLGGLFGTISIFVGGVLNSVLVALIIAIRLPQAPFIAWLAFELACCL
ARAVVLVSARRAAAAGRPTHTDAYIVLTVLWSCSVGYGTLISVASGDWVAAILACLSAAAMVGGICFRNFSAPRLTALMI
CVSLGPCTTLPWFTGEHSLWIVSVQLPLYLASMTVAAYRFNRMLVATMQAERDSDRLARCDALTGLMNRFGLGFALERAV
AATRRDGNEFALLYLDLDGFKSVNDTHGHAAGDRLLRDVAARLTELAPADAAIARIGGDEFVLLVRDCDEACATALGDRI
VARICELYDLGTPRPVRIGGSVGIALVPRHGQEMTAILKAADRALYLAKSAGKSRTALAA
>SEQF2266_AEE65815.1 methylated-DNA--protein-cysteine methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGTRAPHTVKAPSNQERIMQFFQAQLESPLGALSLVTDDRQQVRALEFADSPQRLQRLLHLHYGTYTLREAPAPAAIVT
ALAHYFSGQCDALDGIATATGGSALQQRVWQALRRIPAGEVTSYGALARQLGHDDRQAARAIGGANAANPIALIVPCHRV
IGKDGALKGYAWGLERKRWLLAHENAAAGLLREAG
>SEQF2266_AEE65816.1 alkylated DNA repair protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQADLFDAEQTGIRTRLGEQAWVLRGFALPWLDALLPALRAVIAQAPLRHMATPGGFTMSVALTNCGALGWTTDAHGYRY
RPDDPQTGLPWPPMPQAFAQLAREAAAQAGFAGFDPDACLVNRYAPGARMSLHQDKNERDFGAPIVSVSLGLPAMFLFGG
ARRDERPARIPLLHGDVAVWGGVDRLRYHGVMPLAEGQHPLLGRQRINFTLRRAGA
>SEQF2266_AEE65817.1 hypothetical protein BPTD_0336 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTCPNTVQARIGALDWPALETALDARGAAVAHGLLDARECGELAALYAQPRLFRSRIVMARHGFGRGEYQYFAYPLPPL
VAQLRTAFYPPLAAVANRWNAALRDPMRYPARHADWLHTCHQADQARPTPLLLKYGPGDYNCLHQDLYGERVFPLQVAIL
LSRPGRDFDGGEFVMTEQRSGHAARAEVMPLAQGDALVFAVNRRPAQGARGPVQASLRHGVSELRAGQRYTIGIIFHDAT
>SEQF2266_AEE65818.1 hypothetical protein BPTD_0337 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEWVLVSACLLGRPVRYDGRDAATGHPVLARWQAERRVVAVCPEVAGGLPTPRPPAEIAAGAGGAAVLDGLAQVREASGV
DVSAAFVEGARQALALVRERGIRVAVLKEGSPSCGSGYTYDGSFSGARIAREGVTAASLRRAGVRVFSEHELDAAQAWLR
HLETGA
>SEQF2266_AEE65819.1 hemin importer ATP-binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLQARNLTLARGGAPILTDVSLTLAPGALVGLLGANGAGKSTLLAALAGELAPRSGQVFLGDADLATLSARQLARRRAV
LPQKPSLSFDLGVSDVVGMGAYPFPELDPAAVRQLVRDALEQAGVTHLAQRRYPQLSGGEQQRVQFARVLAQCHAMHAPG
QTRYLMLDEPISNLDPRHQMELLATARALAHEAGMGVLVIVHDINQAARWCDTLALLADGRLAALGPPADVLTPDHMRRV
YGIEADVLAHPTLPGRLLVLAR
>SEQF2266_AEE65820.1 putative hemin permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGILAAASGAVHIPLADLARLIGGDSTPRDALWRNVLFDIRLPRVLFAATAGAALAICGAAMQALFRNPLAEPGLVGISA
GGAMGAVLAIVLTSGGFAITAPAAFAGSLLATGCAYVLGRRAHGVAGLLLAGIAINTVAGSVIGLLTFMASDAQLRDLTF
WSMGSLAGARWSLLAFLAPWTLLWSWWLMRQWRAMNALLLGEREAHHLGFALRSVRRQLVLATALIVGPLVAATGGIGFV
GLVVPHLIRMTLGADHRWLLPASMLAGALALTLADWLARVVIVPAELPIGLVTSLVGGPFFLWLLARGRRL
>SEQF2266_AEE65821.1 putative hemin binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRQAMKRLLAWLLAMACAGAAAAAQTAPAQRVVTLGGTVTEIVYALGQGGRLVGDDLSSLYPQAATQLPRIGYYRAVPVE
GVLALEPDLVLASEQAGPPDAIERLKAVGVRVAVVSDQASVQSLHARIRAIAQALDAVPEGERLAAQLDAELARAEALPA
SGARALLLMNRTGTPLGAGRDTAADLLLRLSGLANALAGQEGYKPLSAEALGALAPEVIVVTAASLAASGGLEKLRAQPG
IAATPAAQRQCIVVMDDLLALGTGPRLPQAIRQLKETPCVAGHGAPPAR
>SEQF2266_AEE65822.1 putative hemin transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEPTFATRAAALRQRNDELAASQPGQRARNLAQALGVSEAEWIAAGCNGARVTALRGKPQAIFRDLGELGEVMALTRND
WCVHERHGRYEDIQAEGPVGLVLGPDIDLRVFFNCWASAWAVEQDGHTSLQFFDGAGVAVHKVYRTEATDGAAWEALVAR
YAGEPEWPEPQPYPPAADAAAVDDPAALRRDWLAMQDTHEFFPLLRRLKVGRLAALKAAGADLAQQVPAETVEHMLTQAA
ASGLSIMCFVGNRGMIQIHTGPVEKLRRTGPWYNVLDPRFNLHLNTETVDSAWVVSKPTSDGWVTSLELYTAGGELIVQF
FGERKPGKPELTAWRQLLSGLCGQPLAE
>SEQF2266_AEE65823.1 outer membrane heme receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGALAACALAGTLAAAPAAAQPTAAPASAGARAWHIDAGPLGEALARFADQAGITLLYDPAAVRGRASAGLQGVYSVPD
GLARLLDGSGLDARQRGAGTYVLQALPAGPVAQLAPVTIEADGVRADPAWARTATRRELDARQVLDWSDIGKRVDPGVNY
NRRTKSINIRGLDENRVVTRIDGIRLPWLDDGARGIQGGLNAVDFNTLSRLDVVRGADSSAAGSGALGGLADLRTLEPAD
LLRDGRRFGALAKSDYDSADASWGLNAALAGQVHDDTSWLLQAGTRNGHDLDNRADTGGYGSKRSQPSPEDYAQNNFLLK
LQQRIDGGHRLGLTGEYFKRRADLDQMYQQGAGTSYQYGANRTHEETTRKRVSLDYQYNAPQAGAAIDSARAMVYWQRLR
LDSSQDARRTRDGRAYARPGDPYFYGYPSGPYGRSNSIQESILGVNGELSSRFEGMVSQRVTIGGEWYGNRTEQYSDGYD
NCPAIPPGTPAPMGPRLCDMLHTNQADMPRVKGSQWAIWAQDEIAFADGRYILTPSLRYDHYEQKPQQGGGYQNNPNAGA
LPPSSSGGRFSPKLLGTWKAREALTLYAQYGFGYRAPSATELYTNYGGPGTYLRVGNPSLKPETSKGWELGARLGDDQLG
GAVSLFDNRYQNFIDKNVPLGKGSPQWQPAWDGQYPLGVTGLANRARVRIYGAEASAHWRFAPNWRTWGSLAWAVGKDEN
TGQHLNSVPPLKAILGLGYQRDEWGIDAMLTAATRRDDVQYPEASASARYADFQAPGYGVVDLSAYWRPAAVKGLQLQAG
VFNLFDKKYWEAINVPTAGAIAIPRPLDWYNEPGRSVRVSLTYQY
>SEQF2266_AEE65824.1 heme uptake transmembrane sensor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAREAARWLVRLGSGQASADEIQACDHWRASHAEHERAWQRARRLTSMFDRIPPAVGQAALGRARDRRAMLKSLVALLAA
PPAAWAALRGARNSGWLADLRTGTGETRTVALGPGTQLRLNTGTAVSLDDGSGLLSLRLHRGEIYLEADRPCRVLTRGGM
IRTQAAHLWLRQDDADGLLGVVAGLAFWQGADNRTHSVAAGQRIAWHDGALQGAAQTLDGSPDWLRGVLRADAMRLDRFL
RELSRYRPGTLRCDPRVAGLRLSGVFQLAHTDDILRALPALLPVQLSYVTPYWITVGPRPAGATT
>SEQF2266_AEE65825.1 heme uptake regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLTSLAPQDAVHALYREHHGWLQSWLRKKLNDAYDAADLAQDTFVRVLRHRAELATLREPRAYLLTIAGRLVVNHYRRR
SLERAYLEALASLPPAHAPSPEQRALILEALDQIDAFLHSLAPKVRQAFLLAQLERLPYADIARRLQVSVRTVQRYIAQG
YEQCILLAP
>SEQF2266_AEE65826.1 hypothetical protein BPTD_0345 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQHARIGQQLLPHFAQRAELRRTIPLFPFTLAELLAPLRRKTTNRPGSDEPALDAR
>SEQF2266_AEE65827.1 putative ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIVVFHKGDETFTDEVKDNTNLVVRAGIKQFPYPNLRYQCGMGKCATCACRILAGGEHLPEPNWKEKKQLGDRLAQGYR
LACQLWITHDIELRQDAAAPAGGGD
>SEQF2266_AEE65828.1 hypothetical protein BPTD_0347 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYVILTNKPGQFHTEAGPEFEVVEEYDYLFYGQRKAIYQIAALRGEAKVAIVEEGPGAVVNHVPSKFLEKFESLQGARDA
LTDLTRFGSMQAELVRRDA
>SEQF2266_AEE65829.1 putative ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTMVEITFITNGGKVVTAPENSNLLRVSLKEQGGIPFKCGGGLCGTCKCLIESGLEHTDAIKPKERRHLTPEDFERGYR
MACQTFVNGDIKVSWQKPKPV
>SEQF2266_AEE65830.1 ornithine cyclodeaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLHIDDAMIEDAVTPQAAQEVLHAAFLDFGRGSAAMQRRVRTEAGGVKLSTLGAVIPGQGVAGAKVYTTIKGQFQFVILL
FSAADGRPLATCDAGTLTRKRTAACTVLAAGALARPRSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILER
IGRRCGVPARMAAPADIAAQADIVVTATRSTTPLFAGQALRAGAFVGAIGSSLPHTRELDDEALRRARAVVVEWREQTLS
EAGDLVLAAPDTGLDAKVVELADVLAGRAAARQADEDIVIYKSVGVGLEDVALAGYAYRRLAAQRGWPAP
>SEQF2266_AEE65831.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65832.1 GntR family transcription regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAISGPSTYPLDAGHSAPSLKIGEQHMPLFAVIRDKLRERILSGEFTPGDRLIEGRLSDDMGVSRIPVREALRALAAEGL
VTIEPRRGASVAVPSEAIAYDMVEVRATLEGLNAKLAAQRRDDATVTRLRKFLDDGTEAARSDDLQQFLALNSQFHEMLA
TIAGNVVLTDLMRSLRDRTALLFAPSNMRRAKQNWDEHAQILNAVIAGNGELASLLATQHVHNAARAYTEAQQQNQPSAA
>SEQF2266_AEE65833.1 hypothetical protein BPTD_0352 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPWLAYAPDPWLFAAMAATVFVAAVAQGIGGVGFAMLAAPVAGIFFPQLAPGPLLTLGGFVSLLTALRERAAIDWATVGY
TLVGRFAGTLVAVYALTRFAPQLLSVLFAVSILAAVGISVAGVRISASPAQMSGAGLASGVMGTITSVGAPPLAIMMQHS
PPPRLRATLGLILFIGASFSLTMLSLADRYGVNEFLLSVGLLPFLLLGFSCSSRLKERMRPATVRRILLGICAIGALVVL
ARAALGA
>SEQF2266_AEE65834.1 hypothetical protein BPTD_0353 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQSDVVLGAAHWVYLLSVVAIILTMVLRANAVVPSVLGTFLVVLAFTGSPIQALVGIFTASFVAAKELFNIFLVITFMTA
LLNALKVLQADVRMVQPLRRVMTNGHASFLILAGCTYGLSLFFWPTPAVPLVCAILLPAAVAAGLPPLAGAMAIAIAGQG
MALSSEYVIGVAPGISAKAAGAAVSAAVVADRALVLSVITGAIALVMTYLFMRKHIVPGDTALLAAWQARAQDGELERIE
GSGSFDKAELARGASQPVKGGAEARLAGWSRAFALITPIAFLGVIALMALPRLVPGLPALRGGDAAALVGGVAFMLMMLA
TLAAEGPRRMLDVCPEHVTDGFVFAFRAMGSVLPIAGFFFIGAAETAAPILGLESGHAPGLLFDLISAAQHLIPENHYLV
AFGVLLVGMVTGIDGSGFAGLPLTGTLSGALGPVVGIDPATLAAVGQMGAVWTGGGTLIAWSSLIAVAGFARVHVLDMVR
ALMLPVLLALSVSTIAAILIWS
>SEQF2266_AEE65835.1 hypothetical protein BPTD_0354 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDLMSREEFRSALENAIKGKSANASPFSIAWASGQLSREHLARWAENHYHYVGPFADYLAYIYGRTPDTYTEAKDFLLA
NMYEEEIGGDRHTDLLIRFAEACGTTRERVVSPDNMSPTTRGLQSWCYAVAMREDPIVAVAGLVVGLESQVPSIYRKQTP
TLREKYGFTDEEVEFFDLHIVSDEIHGERGYQIVLEHANTPELQQRCLRICEVGAQMRLLYTTALYTDYVQHELSLDKLK
LAA
>SEQF2266_AEE65836.1 aldehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEDLRNHEFKNYIGGQWVACAAGKTYPNVNPADTDDIVGRFQASQAEDAAAAVAAAQAAFDGWRNLAVSKRAALMQRAAD
YLEAHAEQFGRELTREEGKALNLAKDEVLRSAQTIRFYAAEGQSFSGETFVNDDPDMVVYSQREPLGVVTVISPWNFPVS
IPARKIAPALITGNTVVFKPSSDAPLSGLRLVEAFEQAGLPPGVLNLVTGSASAIGAAITQASQVRAVSFTGSTAAGEQI
HRSVDMTTRTQMELGGKNPLIVMADADLDRAVDLVVKGGFSLSGQACTGTSRVLVDAPVKAAFTEKLLAKVKALKVGNSL
EGSFDLGPLATARQLESVMRYIEVGKQEARLLCGGERLEGPGYERGYYLTPAVFADVTQQMRIAREEIFGPVIALIEVNG
YEDAIAKANDTEYGLAAAIATTNAQYAHRFARDIQAGTVKINRTTTGNLINAPFGGLKRSSTSTFRESGRIGLEFYTQIK
TVYRAG
>SEQF2266_AEE65837.1 hypothetical protein BPTD_0356 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQIYRLELEEARVMIQAAIAKSEEIGVLESICIVDDGGYPIALERMNGARITGPQIAWNKAFTTAGHKRSTHLFNTPPN
GPALPGNEAFGIQWSFEGKFAVFVGGFPIVVDDEVIGGVGLSGGNGEQDTKAGVAALQALADMLAERGMKVMVAADIKK
>SEQF2266_AEE65838.1 CDP-6-deoxy-delta-3,4-glucoseen reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAYRIHLMETGEQFSAEPGESVLDAATRANVRMAHECTFGGCGTCRVKLLEGRVEYEEPPMALSEEEAACGYALVCQARA
CSDLEISVASGPSFAEPRRIAARVAHIAPLCSDVTHLALEVDPDQWPDYRAGQYMNIVLPDGQTRSFSMASDPRHGRLDF
HVRRIAGGRFTDRWLAAAQAGAPLEIEAPLGTFCYHEQDYRPLVMVATGTGLAPIKAMLESLLDDDECPPVSLYWGMRTE
ADLYLRDAIASWQGRLYEFDFVPVLSRPDAGWRGRSGYVQDAVLQDFDDLSEHALYLCGSPTMIAQAKHRFAERGASLDH
LYADSFTFQHPLAAAA
>SEQF2266_AEE65839.1 extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMIDPELRPAFLPAGKLRAAINLGNPILAGTDAAGQAVGVSVDLAREFARRLNAGIELRVFDTAGQSVDAVTREEADIGF
FAIDPARGAGIAFTGPYVLIEGAYLVRDDSPLQANEDVDRAGKRVTVGKGSAYDLHLTRALQHAEIVRAASSQAVVDTFL
ARRLDVAAGVKQQLQADARRVGGVRLLPGRFMVIRQAMGLPKARGDAAAACLDAFVESMKGNGFVAQALARHGIQGASVA
PPGRDG
>SEQF2266_AEE65840.1 hypothetical protein BPTD_0359 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVRCALAGAGLACCVSAMATPIFVLNSLNADVSIIDSQTYAEMRRVPTGKEPHHLYLTPDEQSLMVANAMSDTITLLDPR
TGAVQHTLTGIVDPYHLRFSPDMKWFVTAANRLDHIDIYSWERRTEEFDLKLARRIPAGRTPSHIAIDSGSRVAYVTLQD
SDQLIAIDLGTQAPLWTIPVGKTPADVFVTGDDKILLVALTGDSYVEAYDLTVSPARLVRRIKTGAGAHAFRAQGDGRHL
FVSNRAANTISRIDMQTLEVVDSYPAPGGPDCMDVLADGKMLLVTSRWAGKLTVIDLETKKVSQQVRVGKSPHGVWTLGH
AAAR
>SEQF2266_AEE65841.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQDQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65842.1 hypothetical protein BPTD_0362 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPDPSVLLLYTLYLVAIVAEAMTAALAAGRRDMDWVGVCVIACVTALGGGSLRDVLLGHYPLSWVAHPEYLWMTAGAAL
LTALGARALRRLRSLFLLLDAIGLVAFTIIGCQVAQQMEMPLTIVLVSGMITGCAGGVLRDVLCNDIPLLFRSELYASVS
AVTGGLYLAMYGQGVSASVSVPVALAVGLAFRLLALRFNWQMPKFVYRGDWH
>SEQF2266_AEE65843.1 glutamate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLQSLDDFLRRVAARDPQQAEFMQAVQEVMLSLWPFIEKHPHYAEHALLERLVEPERVIQFRVCWTDDQGQAQVNRAFR
IQHSSAIGPFKGGMRFHPTVNLSVLKFLAFEQTLKNALTTLPMGGGKGGSDFDPKGKSDAEVMRFCQALMLELHRHLGPD
TDVPAGDIGVGAREVGFMAGMMKKLSNSAASVFTGKGLCFGGSLIRPEATGYGTVYFAQEMLQRAGLSFDGMRVSVSGSG
NVAQYAIEKAMALGAKVVTISDSCGTVIDEAGFTHEKLLALMHIKNDLRGRLDTYASQFGLRYEAGVRPWHVPVDVALPC
ATQNELDENDARTLIRNGVKCVAEGANMPATLDAAKAFIAAEVLYAPGKASNAGGVAVSGLEMSQNSARLPWTREQVNAR
LHAIMRDIHENCVRHGHGAGNYVNYVDGANIAGFVKVADAMRQQGLY
>SEQF2266_AEE65844.1 putative endonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRITSLNLNGIRSAFRKGLQPWMTAHNADVLCLQEIKVSHDDLTDELRHPPGYTGHFHHAEKKGYSGVGMYLRAGAERV
VAGFDCEEFDAEGRILRADWKDLSVISAYLPSGSSGDERQQTKYRFLDQFGPWLDGLMAEHRKTGREFVICGDWNIAHKE
IDLKNWKGNQKNSGFLPEERAWLTEVFDRRGFVDVFRKLDERADQYTWWSNRGQAWAKNVGWRIDYQIATPGIAERARAT
SIYKDERFSDHAPLTVDYDIAL
>SEQF2266_AEE65845.1 orotate phosphoribosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASASTAADFVRFALDEGVLRFGSFKVKSGRISPYFFNAGLFNSGRSVGTLAGFYAQALIDSGVAFDMLFGPAYKGIPL
ATATSVALAGHGAMAGRDVPFAFNRKEAKDHGEGGTLVGAPLTGKVVIIDDVITAGTSVRESVEIIRAAGAEPAAVLIAL
DRMERAGPDDALSPHSAVQDVARTYGIPVVSIASLADIMTLLQDDAQFAEHRAAVQAYRSKYGV
>SEQF2266_AEE65846.1 aspartyl/glutamyl-tRNA amidotransferase subunit B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNWEIVIGLETHTQLSTDSKIFSGSSTRFGAAPNTQANAVDLALPGSLPVMNRGAAERAILFGLAVGGKVAPRSVFARKN
YFYPDLPKGYQISQYELPVVEGGTLSFFVGEEEKTVNLTRAHLEEDAGKSLHDEFSLASGAPASGIDLNRAGTPLLEIVT
EPEMRSAAEAVAYARALHSLVVWLGICDGNMQEGSFRCDANVSVRPVGQKEFGTRTEIKNVNSFRFLERAILFEARRQIE
LIEDGGTVVQETRLYDADRDETRSMRSKEDAHDYRYFPDPDLPPLVIGQDWIDAVRAGMPELPAAQRARFEADYGLPAYD
AAQLTVSRAMADYFEAVARALPAGQAKLAANWIMGEVAATLNREEKDIDAAPVSAAALAALINRIIDGTISNKIARDVFA
AMWAGENGGDADAIIEARGLKQISDSGAIGAMIDEVLAANPAIVEEYRAGKQKAFNSLVGQIMKAAKGKANPQQVNELLK
EKLG
>SEQF2266_AEE65847.1 aspartyl/glutamyl-tRNA amidotransferase subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQSALHTEFGGIAALRDALARRQVSAVELAQSGLDAAQAASGLNAFLHIDPDLTLAQARAADAALAAGTAGPLAGIPIA
HKDAFVTRGWRTTAGSKMLAGYASPFDATVVERLAEAGAVSLGKLNCDEFAMGSGNENSAYGPVRNPWDTQAVPGGSSGG
SAAAVAARLVAAATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGIIAFGSSLDQAGPLAPSSRDLLELLDVMTGFDPRD
ATSLQACDGQANESGRVRRGHDAAQAGYDAAGSQPLKGLRIGVPQEYFGAGLAPDVAAAVEAALAQFEQLGAVRVPVSLP
RTELAIPAYYVIAPAEASSNLARYDGVRYGHRAAQYGDLNEMISRSRAEGFGDEVKRRILIGTYVLSHGYYDAYYLQAQR
LRRLIAQDFQRAFAGQCDVIMGPVSPTVAKNIGDNRDDPTADWLADVYTLGVSLAGLPAMSVPCGFGGQDGRRPVGLQII
GNYFDEGRLLALADRYQQVTDWHQRAPVSQDA
>SEQF2266_AEE65848.1 aspartyl/glutamyl-tRNA amidotransferase subunit C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALNEQDVARIARLARIELTPDQRGRAQAELNGILHLIERLQAVDTQGVEPLAHPLSAHEDITLRLREDAVSEQATEARR
AELLANAPESADGLFLVPKVIE
>SEQF2266_AEE65849.1 rod shape-determining protein MreB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEGGPNGKKIIQAVGHEAKQMLGRVPGNIEAIRPMKDG
VIADFTVTEQMLKQFIRMVHPRNMLAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDAS
GSMVVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKEIGSAFPGSEVREIEVKGR
NLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPPELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVAD
DPLTCVVRGCGEALEHLEKLGAIFIND
>SEQF2266_AEE65850.1 rod shape-determining protein MreC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRS
ENEALQRQRIELAQVATHAAQLAAENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEG
GVVGQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANIPGVIEVRYLAANADIKVGDTIVTSGVGGLFPAGLPV
AKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQAESNRQEADVDGAD
>SEQF2266_AEE65851.1 rod shape-determining protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLTAFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHR
RLQRFDLWSQAMHMLPVFFLAQLVTQIILAWLAGKWPGWQWAVSVGLTVAIWPLAGWVLHMPQRRYDDVESSAV
>SEQF2266_AEE65852.1 penicillin-binding protein 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRYEGFSERADRNRIAVVPIPPRRGEILDRNGEVLARN
YRTYTLEVVPAQAGNLDQLFDRLARVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARW
VREYPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGLEEVEVTAGGRPMRTLRRI
DPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPL
YGTYPIGSTYKPFVALAALELGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNAL
HDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYNSFTLLQLAQATSTLANSGLYRR
PHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIKRAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRAS
AIDERLRDHALFMGFAPVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAALELGA
TDGPMQERRQ
>SEQF2266_AEE65853.1 rod shape-determining protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRFAEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVL
GVILLLGVEFFGETSKGATRWLNLGVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLG
TALLVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTI
QSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLFMARGLAIASRASSQFGRLLAGA
ITMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA
>SEQF2266_AEE65854.1 putative L-lactate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLSIAQAIAFGQRLLAAQGVPDDIARDVAEHLVESDRVGYTSHGLSILPNYRRVLAEGFVKADGRAKLLNDRGAMLAFD
GDNGFGQHVGKAVMQQAIERARQYGQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTN
PLCFAGPLPGGCPPFLVDMATSSIAVNKARVLAARGEPAPDGALIDAQGNPTNDPNALFADPPGALLPFGGHKGYAMGLV
AELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNADWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRAR
HAEAIEFEGAIWDSLAKLAQDLGAADALPRA
>SEQF2266_AEE65855.1 putative Sodium:sulfate symportert [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPAAVPAPQSPPKVKIPIGLIAGIIAMVVVLLLPLPAELPPAGHRMLAILAFAVVVWITEAVSYEASAIMITTLMAFL
LGTAPNVKNPDVLYGTSAAISMALTGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVL
SLVVPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVAWSDWL
IAGVPWSLLMSAVLVFVVLRLLPPESDAIAGGKEAVEASLRELGPMTSAQKRLILVSIMLLLFWSTEGKLHKFDTTSTTY
FGLVLLMLPRFGVMTWKDVQTRIPWGAVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILIH
LGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVALGTETFTAKQFAKVGIVLTIVGY
LLMLLMSVTYWRWLGWM
>SEQF2266_AEE65856.1 nucleoid occlusion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALYRHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYG
MGQARKTVAMLLAFAERNRGITRVLTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTH
LVLGRWLRYAQSGWRVAPTTHLEEHLRLALG
>SEQF2266_AEE65857.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIFPLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGA
TVIGLVRHHGVDADAFLHRSHNFEVAPLVRAETALADKLRRLPGRKVLLTNAPLHYARAVLRHLGLLRQFDSIWAIEQMC
MHGQFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGHRQRPGYVDLRVNSVSDLL
LRRRPLRG
>SEQF2266_AEE65858.1 acetylglutamate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMTEERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDA
LRRIGKQGTFVQGMRVTDAETMEVVEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGL
VGDITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNTPGVLDKGGKLLRSLSAQT
IDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPHCLLLEILTDQGVGTMISSH
>SEQF2266_AEE65859.1 hypothetical protein BPTD_0379 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMNFVRSALLASAFLLAGGAAQAEKLVVGATQVPHAEILEVVKPALAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQ
HQPYLDTFNKDRKTNLVSVGLVHVEPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPSNIVATP
IDIAENPKKLKFRELEAAMLPRSFDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLVAARPDNKDAPAVKKLVNA
LHSEAVRKFIIEKYKGAVVPAF
>SEQF2266_AEE65860.1 putative thioredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQDLRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQ
GYETIAVAMNYDPPNYVLNFAQTRKLPFPVALDTSGELAQAFGNVRLTPTAFLIDKQGQIIKRYLGEYDKAEFQATVQKA
LAG
>SEQF2266_AEE65861.1 hypothetical protein BPTD_0381 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVTDRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAM
VYGGHVLLTGDAPTEEAKAQATAIAQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSR
GVVYLMGKVTQAEGDYAANAAAGVGGVARVVKLFETISREEAIRLSGSGTKSGEGSSDGTAAQKAPIESGAAPAGSGSNG
VEAIPIK
>SEQF2266_AEE65862.1 phosphoheptose isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALANNGRILACGNGGSAADAQHFIAELVGRFERERLPLA
GIALNTDTSIMTAVGNDYGFDEIFERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELIT
PHDVHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE
>SEQF2266_AEE65863.1 putative tetrapyrrole methylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQDVLSPAQGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLGLRAWQALVRADVIAAEDTRASRTLLDAWGVSTPLM
AAHRHNEASAAQAICERLAQGQRVALVSDAGAPAVSDPGARIVRAVREAGYAVVPVPGPSAVIAALMGSGATSDENPAFA
FAGFLPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRFEEIATMPLGEAADWLAAD
AHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESLSVRDAARVAAKVTGLARDVLYARALARKEQP
>SEQF2266_AEE65864.1 methylated-DNA--protein-cysteine methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPPSAQATDILYCDTDTPLGPMRLAARGQALCGAWFVDQRDCPAAAGWTLDAAHPALRQAAAELEQWFAGRRRAFEVAM
QPEGTPFQRQVWQALLELPFGATISYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQAL
LAHEGHRYLSRAARARRVSTTQMELPLGAA
>SEQF2266_AEE65865.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65866.1 putative reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNMAAHCQEPCMGTPVRYIDKTRDYYLSQGYEKPYQWAQYDDVPFTPLGKPLSECRVTLISTSEISIVGDTHPEDETRMG
IVGGTYTIPSSLPASQLYSPSRSFDQAATTLEDVDAFFPTTHLHAAAQAGRIGGVTQRFHGVFNAYSQRRTRERDAPLVL
ERCKEDGADVAILVPVCPVCHQTISLVSRHLEANGIPTVILAAARDIVEHVGVARVVHTDFPLGNPCGEPGNAAQQREIL
EYGFQLLERAFLPRTTVQSPMRWSAGEAWKDLVFTPEQPWKSGETEQDWLRKKELYKKLKQEGKV
>SEQF2266_AEE65867.1 putative glutaredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNMAHDIVVYATPFCAPCERLKKFLQEKQVPFRSVDLMMDEEAAEKLEDLGIRSSPVLEVDGRYYHGGQLQPDTLAALLG
LP
>SEQF2266_AEE65868.1 putative dehydratase/racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKGPLDGVRIVDLTTVLMGPFATQMLGDMGADVIKIEAPHGDVSRQIWPYRHPGMGHMFMNVNRNKRSVVLDLKHAEARK
ALFALLAGADALIYNIRPRAMARIGLSYDEVARHNPRLLYVGAFGYSQRGPYAAKPAYEDLIQGAVGLPHLFQRQGSQWP
HYAPINLADRTVGLQIVNAVCAGLFCRERTGQGQRIDVPMFEAMLALVMGEHLGGAGFEPPVDGLGYNRILTADRRPFAT
RDGHICVLIYNDKQWQGFCRLIGRPELAADPRYATAASRSQQYSEINGLLASEFAQRDTQDWIAAFEAADIPVQKMNDLQ
DILDDPHLNAIDYFQEHPHPTEGTIRTTAPPVEWSGTPGGYRRHAPRLGEHTLEVLREAGIGQGDIDALLASGAARCAVS
G
>SEQF2266_AEE65869.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRILQKIYATTAHLGLAAALGLSCTASTAAPANPQGRAVQLVIPFAPGGVTDLIARLIQPRLSEALGQTVVISNRPGAG
GVVATSYVAKSEPDGHTLFLSWDSHTINSIAMKDLPYDIFRDFAPVTLMVRMPLIMGAWGGLPVDNLQGLLELARRNPGK
YNFASIGVGSSNRLHAELLNATAGVDIVHVPYAGGGPATTAIRSGEVAYGFFSYGALRNFIQEGRIKPLAVTGAKRLPEL
PDVPTLQESRFPGFEAYSWVGIYVPAATPAAEIKRLNQAFVAVLRDPEIEQKLRKLSVEVVASSPQALRDFERGDYEKWL
AFTRQRNMSFD
>SEQF2266_AEE65870.1 putative dehydratase/racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNGARLPLAGIRVIDLSRVLAGPVCGALLGDKGADVIKVEDVEGGNESRHWAPQREGHSPVYVANNRNKRSIAVDLKAPE
GRDIVAALIDTADVLIENFGTGAMERLGLGYDTLAARNPRLVYCSIAAFGRQGPRADEAGYEALMQAFSGVMSITGEPGR
PPVRCGVSALDIFTGTLAGFAVSNAILMRQTSGVGQRLDASLFDSAVGLLNFQAQNYLLCGQKPAPMGSAHPSLVPYQCF
LCHDHRWIFVAAGNDRLWRRLATAIGQPDLADDPRFLRNIDRVAHRRELLKLLDGCFASLPLEDALERCRQAGVPAAPVN
SVAQALADPQAAQLAALRPMAHPDLGEIEVVGLPVAFSAIPAMPCAPAPAHGADTQAILRDLGMDGDTYEALRLRRVLKG
SPRDGT
>SEQF2266_AEE65871.1 hypothetical protein BPTD_0392 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTQPGTRTARDALLAARNGRIRAMLARVRKIAEPAITRAGLARIRDELLALAAERDLFPIEEFPPIEGGNSSMYCLAED
PDHRYALYVVAPAAGGFAPPHDHRTWAVIAGMYGRERNKLYRRLDDGSDPDQARLEVSGELDIVAGTAVVLMPEDIHSIA
LGEDGPHGSLHLYGMSVEHCHDRRMYSLSKGTSRTFPAATGVVSAHGALRGGLA
>SEQF2266_AEE65872.1 IclR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDQLIDAMETTDRQFATTLQRGLLVLACFDVRQPFLTNKEISARTGIPSPTVSRLTYTLTLMGYLKHHRHLGKYGKYELG
NAVLSLAHPLLANVNVRQVARVPMRELAEYAHGWVSLGARERLSMVYLETARARNALDVKPDIGQTFPMLVSAMGRAYLA
ASQPSERERLMNQLRIYHPELMAEQAEELEHSRADYAAYGFCLSRGDYDRGTWAVAAPMRVPESQELLVFNCAVRVKNRQ
AEELGLHLIDVVGPRLLDMVDAIRRALED
>SEQF2266_AEE65873.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65874.1 thioredoxin reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPPKHAKVLILGSGPAGYTAAIYAARANLAPLVVTGLAQGGQLMTTTDVDNWPADPDGVQGPDLMQRFLRHAQRFDAGV
VSDAIHTVRLDRRPFALTGDQGAYTCDALVIATGASAKYLGLPSERAFMGKGVSGCATCDGFFYRNRDVLVVGGGNTAVE
EALYLSNICRTVTVVHRRDRFRAEPILVDRLQARAALGKVKFEYFHELDEVLGDASGVTGARLRDNRDGTARDVAAKGVF
IAIGHAPDTGLFEGQLALRNGYIVTRGGLSGLATMTSIPGVFAAGDVQDQIYRQAVTSAGTGCMAALDAQRWLEGAA
>SEQF2266_AEE65875.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHKPLAR
TDCPSPR
>SEQF2266_AEE65876.1 putative exported protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTNIAKWLGRLVVAGVAFGSGAPAAPAATAADQPSSWPRKSVTIVVPFSPGGSTDQIARLFSAKLAEKLGQPFVVVNRP
GAGTIVGMQEVVRARPDGYTLLLAVPPLVVNPALYPQLSYQPLRDTQAVGLVALNPNVLVVPADSPWRTPQQLFEAAQAK
PDTITIGSPGIGTVPHLVSLLIGQELNVRVVPVPYKGSAALMPDLVSGRVNAAMDNLFAQVACELSIGCIRPG
>SEQF2266_AEE65877.1 enoyl-CoA hydratase/isomerase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNHISIRYEDSVAVVTYDRGEKKNAMSMQIIRDLTATAEALKDRHDITCVVLGGSRAAFSAGVDLTDPERFDLAGKSLSE
QRQILTLGTRMCRAWEELPQITVAAIEGMNVGGGVALTLCCDWRVMADDAYLFVPEAQIGINLSWNAIPRLVNMVGASMA
KQIVLLGEKMPSAQARELGLVDWVVPGGSAEARAIEVAGRVSQCPAHVVRMSKQSINAHANALNHLGTYMDVDQAMVCGA
SPEAARARDQFNKARA
>SEQF2266_AEE65878.1 hypothetical protein BPTD_0400 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGALPSIGDRRVTSTIPGSPALDGLVVLDISRVLAGPLAGQILGDHGANVIKVESFNGDDTRGYGPPFVGEDAAYFLGLN
RNKRSIAVDLSRPQGRDLLLDMVLGADVLIENFKRSTWRKWGITDFGQLSARNPRLVHCRISGFGDDGQLGGMPGYDAAV
QALTGFMTINGPAEADPTKLGVPIIDVSTGLNAAIAISLALFERSKSGKGQLVEVSLFDTALAILHPHAANVLAGGKAER
SGNLHPNIYPYDLFPTRTADIYLAVGNDGQFRYLCKSLGCPQLADDGRFSSNRLRVANRAALREILTQRLQDVDGSELFQ
GLLNNGVPCAPVHSVQEALELEHLRQRDGLVRVGEYQGLRSPIRMQRTPPSVRARPPGIGEHTDELLGELGLPPGQIARL
VDEGVVKVSKERA
>SEQF2266_AEE65879.1 hypothetical protein BPTD_0401 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNACLPAEAPLADPDPLDPDRKAVDEVARILKAEHTELLFCFPINSLIDAATAAGIRPVVARTERAVVGMADGYARASLG
ERVGVCAVQYGPGCENAFGAMAQAYSDSSPVLMLPGGVNESRTDVRPNFETAKHYGNITKWVARVNRPDRVGEMMRRAYT
GLRNGRRGPVALELPMDVMEQPVGRSASRHAPSQAIRTLCDPDTVRAACRLLLAAERPVLHAGAGVLQSGATPELVELAE
LLSIPTMTTLSGKSGFPERHPLALGSGGMAWPATVAHGLRTADLLFGVGASLTKSVFAAPLPAGRRAMQLAVDDSDLNKD
YPLDHALLGDARLVLRQMIDMLKNEFGVQPDPARTARTGGELEAIRQAWLRQWHDKLTSASRPINPYRVVHDLQIAWADR
DVIITHDAGSPRDQLSPFYRCRRPGEYLGWERSTHLGYSLPLALGAKMARPDALVAHLLGDAAFGECAMDLETAVRNRIG
TVTVLMNNGCMGGYDKHMPLSSTTHRTRFLSGDYEMIARGLGAWTERVEDPARLVEALREAARVADTGRPAVLEIMTAEE
KALSQEAP
>SEQF2266_AEE65880.1 LysR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLRQIEAFLAVVDLGTVTRAAETMYVTQSAVSRLISRLEREVGFTLFDRRQGLMAPTAEAKALHAEAMRSYIGLKEIQF
AAQRIAQIGSGMLKVCVMSSLQQGALPRLVTEFMRKHPGISVMFDVQRHYDVVYAVSRGSAEIGFATLPVDHPNIESLPI
ARTPVVCLLPTGHPLAELEAIRPMDLHGVDFLSVPRMRFNDRITRILEAHGARPRTRIEAGTMLAAMALVEAGAGAGAFV
VDAFTLGAVRDAQVVLRPFHPEVIVEVGALYSNSQPLSILASRFLEHCRAFQHEMETT
>SEQF2266_AEE65881.1 putative sulfurtransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEVVSAQWLRQRLESGAECAVVDPREEGAHSVSPHLFHAVNLPLSQLELRVERLFPRRDVPIVVAGAGDALDERARRRL
QELGYAGAVRLEGGSPAWAGLGLPLFTGFNTASKAFGEYVEHGCATPSISADELREMVASGRPLVIMDSRTPAEHRRATI
PGSVSAPGAELVLRYAELAPDPHTTLVVNCAGRTRSIIGAQSLINAGVPNPVFALRNGTMGWALAGHKVETQSARQAPEP
GAATLALAQQRAAAVRRRFGIGAIGAAELQRLRAGGERTVYLFDVRTQQEYERGHVPGAVHAPGGQLVQATDSYVAVRNA
RIVLYDHHGVRDVMTGSWLRQMGHEDVVTLRADAVSAAQLAAGPQAVRVAGLDGARARRLAPAEAAGSLAQYTVVDVGAY
RDYQAGHLPQAYWVTRARLAEALDGLPADWPLLLVSPDALLAQLACADVTASAARPVYVLEGGMARWRAEGRPVEEGDGR
PLHEPDDAFVKPFEARDRESSMQAYLDWEVGLLDAVQRHPAIRFDLYKE
>SEQF2266_AEE65882.1 hypothetical protein BPTD_0404 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAMKRREMLSLCGKSVIALGCGGLPAILRAQGRFPSKALTYVVAYTPGSANDILVRILAPELGTQLGQSIIVDNKPGAGG
SIGMAAVAQSKADGYTLGLGSTATMAINRALYKNLPYDPLRDFESVVKFASTANVLVVPAGGPAKTLADLKPRDGKSLMF
SSPGNGTTQHLAGVLFSSTTKLPTEHVPYRGPAESVMAVASGEVDFSLASLPSALAQIRAGRLRVLGCTSLKPPSSLPQA
VSLAEQGLPGFERTEVWFGLVVPSGTPDQARLALEQASVQVLGKQDVREKLEQAGYQPANPQSEGKFDPFVREQVAFWAD
LVKQAGASID
>SEQF2266_AEE65883.1 hypothetical protein BPTD_0405 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MREPTPELVARRRELVEATMTRVRAIEKQHGPTREALEAIKNELLALARERDVFLTTEFKPAKRGTFKDFVAYRLNEEDG
TGRAMYLSLALPGKSSPPHNHKNWAVLVGLVGAEENRLYEVDESGSFRQRDAIMVGQGVGVALMGDDIHSIHVQGVGDEP
VWQLRFYERPLEDQVDREQFDPGTGKREMFPPNPNVKPS
>SEQF2266_AEE65884.1 hypothetical protein BPTD_0406 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRSSLVHWSAALAMLGCLSGVSAAGAAAGFPAQPITLVVPYPPGGTADSLARVLAKSMGARLGVNMIVLNKGGAGTVVG
TQFVANSAADGYTLLFTATPFAINPSLFEKLPYDTLKDFTVVSDIAETPLVVAVGSGTSINTLGELVGRLKTGKDNSYGS
AGPGSSPHLVSELLLHEVQGEATHIPYQGSMPAVMDLVANRTTFMFDTPLLMLPLAREGRLKLLAQTSTQRSPLLPSVPT
LQESGYPNLSVTSWFVVAARSGTPREVLEKLNSAINFALADPVVAGAYEAQGMIKTGGTLDKAQAKLRQEVKNWALAVQV
SGAKVR
>SEQF2266_AEE65885.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF2266_AEE65886.1 hypothetical protein BPTD_0409 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGSDLSSLDQAPLASLSVLMPLVLFTLVNSLTPGPNNVMLASSGLTFGFRRTIPHLLGISVGFSIMLLMVGLGLGATLE
RLPWLYSTLKYGGTAYLLYLAWKIATSGPMESGAERGKPLTFIQAALFQWVNPKAWVMIVSVVATYTPQHGYFANLIIAT
LVCGVVNLPSVGVWAAFGMALRRWLHRPAAVRAFNVGMAVLLVVSLYPVGLDLLALYTG
>SEQF2266_AEE65887.1 hypothetical protein BPTD_0410 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVSLPFRLSWRRMAAVLLLAAGALGFNQLDAWQRQAIFSPQTDQQRWWREPPAGTEVFDLALPNGDKVHAWYWQSPRRDA
PTVLYLHGARWNLNGSAFRMEGWTRMGYSMLAIDYRGFGQSTPLLPSEQSASQDAAAALQELARRQPDPARRFIYGHSLG
GAIAIDLAARPDLPPFAGLIVESSFTSIGAMLGTMKWGWVPGATLLVTQPFASVDKLAALTTPMLLLHGTADRVVPHTMS
DELYRAAQQVPADLKRLVKIEGASHSGAIRSGRIYEDAVADFVRDAGRGYAGRQGAPTPLTASRPGT
>SEQF2266_AEE65888.1 hypothetical protein BPTD_0411 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSSSRQTPKTIKERFLHAFFFEIIAIGLSAPVAAWAMDQPLFDMGVLTAVIAWIALLWNMVYNAGFERLERRFGVVRTM
PVRVAHAVGFELGLVLIIVPLAAWWLAISFWEAFMLDIGLLMFYLPYAFFYNLAYDKLRARWWGRIEPAGA
>SEQF2266_AEE65889.1 hypothetical protein BPTD_0412 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSERYDEGQQPAHHVGPQRGQAGPFHAGDRDGPMGGGRGASDGNEPGNLSQQAAHVEEVSPLRNQAGDVRCRRIAVCGD
DFGMNEAIDGALIELAGAGRLSAVSCMPLAPAFAADAPALARLDVDLGVHVDFTEAFAGAAPAAPGLAALLWRAYAGQLD
PDWIDARLASQFDAFERAFGRAPDYVDGHQHVHQLPGILPRLRALLKRRYAGQRIWLRHTAPGLQFGLPLAEAAKARLIG
ALGAGALARAAGQEGWQTNRRMLGVYGFTGGPRRYAGLLHHWLMNARDGDLLMCHPGWPQVHGAAHASQRAAEYEVLAHP
ELGTWLARNGLRIVSLSQVRGRQASQESGKVRNVPHFGSFRRLASRL
>SEQF2266_AEE65890.1 hypothetical protein BPTD_0413 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLATRSMQPHAVSPGQARSWPLPAAGWLLLAVGVWLAFLSWMRPLALPDEGRYAGVAWDMLRNGSFAVPLIDGMPYFHK
PPLYYWLAELSFRLFGVNEWAARLPSALAAWASAVALYLFVRRHRDAASATLCVLVLATLPLFFGGAQYANMDMLVAGMI
TLCVLAGADTALRVRGGQAWRAMALATGVCAALAMLAKGLIGLVLPGAILLAWLAWRRDWRGLRALLWPPAILAFAVVAV
PWFWLMQVRYPGFFQYFFVHQHFERFAQTGFNNVQPFWFYLPVIAGLALPWSLWAGGLLRKQFWAADADPDGLRRLALVW
LAVIVAFFSMPQSKLVGYIMPVLPPLAFLLAEVVMGALRDPAVARATRRMARVSALVAVAICVTAVFVASFNARGSSREL
ALSLRGELRPDDTLVALHTYPFDLQLYAHAARPMWVVDDWSNPEIPKRDNWRRELYDAVQFEPALGERLLVSADTFQQRL
CQAPEGSRYWVWGTAADEEAYAPLRGQAARFADARRSLWLVLVDEAFKGRVCDGTPTGG
>SEQF2266_AEE65891.1 putative glycosyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFMYTEFRSQLLAGAGTSAAGQSARMAVLAGDGATGVQVSCVVPGLNEAANLRVLVPALRACLEQWCASWEIIVVDDGST
DDTAELMAQWSAVEGIRYVQLSRNFGKEAALTAGLEAADGDAVICLDADMQHPPELIGDMLAAWRNGADMVYAVRRQRDD
EPWFKRVGARAFYRLLSTARGVEVPPHAGDFRLMDRRVVEALVALPERTRFMKGLYAWVGFKSQAVPYTPQARRHGASHF
SAWKLFRLACDGLTAFTTWPLRLVSLIGVLFALLSLSYGGYLVADYLISGNAVSGWTTIVTALLFFAGINLISLGVVGEY
VARIFDEVKGRPLFIARQRRGRAKRAAKARSQ
>SEQF2266_AEE65892.1 putative sodium/glutamate symport carrier protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISLTPVQSLLACCLVLVAGRILTTRIGVLSRYSIPDPIVGGLLFAVLATALDTWGGIQISLETNIKPTLLLIFFGCIGL
TADLKLLARGGPRLIAFLLALIPFLVLQNAVGLGLAWLLDMHPLMGLIGGTITLVGGHGTGAAYAARFADINNIQDVMAL
AMTAATIGLVLGGIIGGPVAEWLIRRHKLDPRMAGKDANQVLPEVETTAEAPTATSFITSLTAVFVTVVVGTYLAGLVED
APISLPNFLWCLATGAIIRNFGGYVGIRLDDRVSEIIGSISLSLFLGLTMMTLDLSSVVRLAGPLALMLVAQALVCALYA
GWAVFRMLKRDYEAAVMAAAFCGFAMGATATAIANMQALTRRHGPAPESFIVVPVTGAFLVDILNVIVLTSLIALPFVGG
M
>SEQF2266_AEE65893.1 hypothetical protein BPTD_0418 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMFIRWLILSACLLLAACSRAPDTEILQRDVGQTLAATYGPDLFDIVALRRMGSATDSTAPPGQTRRVVYYDVVLGLKK
DLTLGAWDQPGAAALVSLLGAGPRSISGVKSSGNAAGDQIVAHASAIYQRDAEQWVHVAPASFTATEAPSLDTGAPPPVT
RQLLQTLEQITRSVPYSASSTAQHVVQQELERSVARINGRLARLQKGYPLATGPDKGEYLAFGQALAAIGRNEQVRVIPL
ITGGSADNMAMLRSGAAVAALSQADIAQLAYEGKGPFESQGPFSGLRALGSLYPELVHIVVRQGDGIATVGALRGKKIAL
GPSGSAVRTTLETVLAAHGLQPGRDYAVIDTPAAAALPQLSEGRVDAVAQVIGTPAAPLRAALTQARLALLPLDRAAIDK
LVQADPTLMALDIPANTYPSQAAAIPTVGMAALLVTTADLTRDEAAHMVDVVYRAGQDLLAAGSAQGAQVSAANAGRGLS
IPLHDGAVEAFEKLGAPPLPEGR
>SEQF2266_AEE65894.1 putative short-chain fatty acids transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFKLMSRSAVKMVERYLPDPYVFVVLLTLVAAGAAMIIEGQTPMAVVRWWGNGFWGLLTFAMQMLLVLVTGYMLASTPLV
KRMLARLASLATSAGGAIILVSVVSLAASWINWGFGLVVGALFAKQIARQVRVDYRLLVASAYSGFIIWHGGLAGSIPLT
IATEGHFSADKIGIIPTGDTIFAVFNLVIVVAMFILVPLVNRLMLPDEKESVYVDPARLEEASVPASDDDKRPAARLENS
RLLAWLIAAGGLAYMFDYYVVRGAGLNLNVINFSFLILAILLHGTPRRLLASLDEAIKGGAGIVIQFPFYAGIMAIMMDS
GLAATLSEWFVSIASAATLPFWTFISAGIVNIFIPSGGGQWAVQSPIVISAAQALGADMPRVAMAVAWGDAWTNMLQPFW
ALPVLAIAGLKAKDIMGYCIIQLLVTGVIISVGLSFF
>SEQF2266_AEE65895.1 hypothetical protein BPTD_0420 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHPDTNTMLIIIAAAVALMIVGFGLRDRNLGLGLLGIGLIAALATIAYKAYITFNSFYY
>SEQF2266_AEE65896.1 DNA polymerase III subunit epsilon [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTTEFLADKPRFAEVAEQFLAF
IADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSLLHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQL
LAEVWLAMTRGQDALLIDVDDQGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAVGGACAWRAIEPLPAES
GQPG
>SEQF2266_AEE65897.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF2266_AEE65898.1 putative universal stress protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFKKILIPTDGSPLSAQAANAGICFARSTGAEVVALHVTQPFAATIGFDGMAAAYAITDEDYEKASAEQAEKYLKLILDR
AETAGVKAESRAVSNFNVADGIVQAAGEAGCDLIFIGSHGRSGLSRLLLGSVTAKVLSLAHTAVLVYRVKEDKDKK
>SEQF2266_AEE65899.1 hypothetical protein BPTD_0426 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAAIKPLTENFAVAPQLGPADMADVAAAGYKSVIINRPDFEGGPDQPTAADVSQAAQALGLQVEYQPVVGSAMTAADVA
RFAELLRTMPGPVLAYCRTGTRCTNLFAAAQQLG
>SEQF2266_AEE65900.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRQADATLVTQLADDLARRIDEHGLRPGTRLPSIRRMAEQSGVSRFTVVEAYDRLVARGLVQSRHGAGFFVRARSASLTA
LASARVPQAAPETPVRVDVSWLLRNMFRETAAGMPGGAGLLPPEWLDPDMVAAAVRAVGRTVRGNLVSYGSPQGYAPLRQ
QLASMLQADGVPAHPERNLLTTNGVTHGLDIVARHLIKPGDTVLVEDPAWFVIFGRLAAFGARPVGVPRGPDGPDLAMLD
RLAAEHKPRLYIINGAVHNPIGHTLSAGAAYDILRLAERHDFMVVEDDTYADLHPGGAMKLAALDRLERVILVGGFSKML
AASLRVGYIAAGAETLQRLTDLKMLAGLTSPELGERVVHRVLVEGQYQRHIERVRARVNEARLRSIQALQQLGLSVPHEP
HAGMFVWADCGRDSEPVARNAAERGMLLAPGTLFSPSGAPSTMLRFSVAMVDTPGIWQSIAAVMAQ
>SEQF2266_AEE65901.1 putative Mg(2+) transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTVWMEIWTTVRNEFADIPDVAEATRIVLRLGMAVALGGLLGYERERSGKAAGLRTHMLVALGAALFVLVPLQGGMEVG
DLSRVLQGVIAGIGFLGAGVIIKLGNEGEIRGLTTSAGIWLTAAIGVAAGMGREATALASTLIALFVLAALRRLEKRIAA
RDDKRVVAQPPP
>SEQF2266_AEE65902.1 hypothetical protein BPTD_0430 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDYLVSLAQQPAAWAALATLIAMEVVLGIDNLIFISILTNKLPPQHQTKARRIGIGMALILRLALLGTVAFIVQLTQPVF
ELFGHGFSWRDVILVAGGLFLVWKATKEIHHHVDPNPGDDMFGGKAATLGFAAAVAQILMLDLVFSIDSIITAVGMTEHI
PIMFVAVIVAVAVMLLAAEPLARFIERNPTVVMLALAFLMMIGMTLIAEGFGAHVPKGYIYAAMAFSALVEGLNMMARRA
REGRGAGAAGG
>SEQF2266_AEE65903.1 hypothetical protein BPTD_0431 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGPLEGVRILDVTTVLMGPYATQILGDLGADVIKVEPPAGDNVRGIGPGRHADMGGIFLHANRSKRSIALDLKNPAGRE
ALLKVAATCDVLVYNVRPQAMARLGLSYAEVAQANPSILYVGMYGYDQRGPYAARAAYDDLIQGAVGIPSLSVEAGSDIP
RYAPSAMVDRIVGISAANAVTAGLYHRARTGQGQAIDVPMFETMAHLILGDHMMGQTFEPPLGPPGYPRILNADRRPYAT
RNGHICVLLYADKHWKAFFELIGQPGRDAADPRFRDIGTRTQHIHAIYRLVSDAIASRTTEEWLAAFEAADIPAMPVHTM
ASLLRDPHLEAIGFFGMVDHPSEGAVRMMAVPSRWSGTPPQPRGHAPRLGEHSVDVLKEAGYDDEAIAALVRNGAAIAAA
RQLPEGTDHD
>SEQF2266_AEE65904.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDFLRHERHGGVLLLTMDRERTRNALSDADAVEALVQACARIGADLSVRAVVLTGSHGVFSSGGNLKTLSDTVGAGLGE
PVHSLQAYRSGIQRIPLALYNLEVPTIAAVNGPAIGAGCDLACMCDIRLAARQASFAESFVKLGLTPGDGGAWLLPRIVG
MSRACELAFTGRSIDAARARELGLVSEVFDADALLPAALALAQEIAQHSGHALRLTKRLLREGQHTRLDTLLELSAGFQA
LAHHTQEHAGALDAHLSRKRG
>SEQF2266_AEE65905.1 hypothetical protein BPTD_0433 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHSRTLALALLSVAALAQGGSARAASDYPAHPVKIIVSLPPGSGADTTARFLSKHLAERFKQPFVVENRPGGNSFIAAQA
VATAPPDGYTLFVASNSPMTTNAAVFKNLPYDAVKDFAPVAPIARFPMALVVPANSPYRSVADLVAAARAAPGQLNFASG
TATYQVVLELFHEQNGIKATHVPYKGTSAALADVAGGVVQYSVADVSAALPLIRGGKLRPLAVTSTRRIKDLPDVPTMQE
SGNKGFEAYAWTAAFFPAKVDPAIVARVSDAVQALVRSQEGKAFMEQLGGEPFVGGPDTLAAFQRDELASMRRIAKLANI
QQE
>SEQF2266_AEE65906.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELRQLKQLLVLSETLNFHRAAERLHMAQPPLSTAIKKLEQELGVQLFERLPAGLQPTPAAEVVLRYARATLFYADEIQR
AAQEGASGKQGMLKVGFVGSSIYSLMPQLLSAFRKDYPRVDLVIEESTTVDLLRRLDAHTLDVALVRFPVLEPSTARITL
LQADHLMLAVPAGSRYAQRDDVALDELADEPFIGYSRTHVPGMHALIMYAFQQYGVVPHIAQEAIQVQTILSLVESGLGL
AIVPKVACRQAGSGVRLVNVPQLAETIKVGIALAVHPDNATPTTANFVDMACRLMQTEPAAGQAR
>SEQF2266_AEE65907.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGTIIEALQLAAIPAHDEALRPAVRAFLDEALREMPADRRARSWMGHDAEFSRALARQGWLGLTLPVEYGGAGRSNFARF
VLSEELLAVGAPVSAHWVADRQTAPLILRFGSPAQRAFYLPRIIRGEAFFAIGMSEPDTGSDLASVRTRATPVADGWLLN
GRKIWTTNAHRSHYMCALVRTSGAPEDRHRGLSQMIFDLALPGIEIRPIRDIAGDAHFCEVLFDNVLLPHDALVGEEGSG
WRQVMAELALERSGPERIYSSMVLLDGWLAHLRCDAAPQRAQVCLAGRLAARLAVLRSMSLAVSQRLEQGADASLAAVLV
KDLGTEFEQAVPELIGQALHASPQPAPDDVLMRTLAYLTLINPTFSLRGGTRHILRGIIARELGLR
>SEQF2266_AEE65908.1 putative acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVSTMQQDLYETFARALAGLCPLERVRELEAAADPRAGAARAWNEVDALGYGDALSPAEHGGAGLSLADAEGLLRAAGAM
ALPFPFADTLLARALLRAAGQAVPDGPIALGVALPHGAGWRCAPIAGVALAQAVAVEHDGCLALWPAPDAVQPGLFRPRA
SGAPAWRGTPAQAGRAGAPAGAVQAWRNAADAAGMAGAMQAVLDRCVAYVQERQQFGRALGRFQAVQQDISMLAEQVAAV
AMAARLACASGVLFPDPALAACARLRACEAVPVVCALAHAVHGAIGITEELPLGLYTARLHEWRATGMSEDDCAELLGRR
VLADGERTLLDVVRGMVSAAHA
>SEQF2266_AEE65909.1 thiolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVHPDPVVIVAARRTPIGAFQGALAHYSAPQLGAHALAAAVRQAGLQPDAAQEALMGCCLFAGLGQAPARQAVLGAGLP
TDVQATTLSKMCGSGMKAAMLAHDMLRAGSADVVLAGGMESMSNAPHLIPKARQGYRLGDGQLLDHMYRDGLQDAYEGRL
MGHYADLAAREYGFSREQQDAYAHESVLRAQRSVAEGEFAEEIAPIAGLARRGAPAAMVAVDETPGLCDVSRLASLKPVF
NADGTVTAGNASSISDGAAALVLTRQAHAERLGLAPQARIVGHATAALPPGQFPAAPVRAIARLFERVGWDRDSVDLFEI
NEAFAVVTMIALRELGLPAERVNVNGGACALGHPVGATGARLIVTLMHALRRRGLRRGVACLCLGGGEATAIAVERA
>SEQF2266_AEE65910.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65911.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELRQLRYFVETAHRRSITKAASALHIVQPALTAQIKALEDELGTQLLERSARGVSLTVDGEAVLRDAVAILRAVDDLKR
RHAAAAHSGRAVKIGIPNGMTRTFAGQLIERARQQCSFDIELIEGMSGHLLEWLKSGRLDIAVLFASQPLRQLEVRRLTA
DSIDLVGPPGALDAQRPVAFRDLTGYPLILPNAKHGLTRHIQAQARAQGVELRHHTTLDSIAEIKHLVSQGVVYTLLAPM
VYRLEMEQGLLSATPVCDPALTRELVTATRRSQEAGDDIAQVRALVHEICGARQDPIAAPG
>SEQF2266_AEE65912.1 cold shock protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTGIVKWFNDEKGFGFIMPENGGPDLFAHYSEIQGEGHKVLVEQQRVSYVPGHGPKGPMATKITPL
>SEQF2266_AEE65913.1 hypothetical protein BPTD_0442 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRLKKALARVANACLGILPPATTAERPNKAHNRHQPGTHAAILSPWRVYRIYARPGHLLLRNDQGRIYDLGIMKGVEPH
LTYRLFTRGLKGQGFASRTLLLDDIARRIEDGEISDELLTLSECTAEPGADLDRGTHTDVSMRLAR
>SEQF2266_AEE65914.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEVNRMARMVPPANLRESVIAQLRSQIVSGAAAPGMIYSVPSLANELGISTTPVREALLELSRSGLVEPLRNRGFRVQAI
TLQDLENHFDVRVMLESGALATLARQGLTDTAPLVALADEVAQAVKDQDVGQYIESDRSFHEALVSRAGNPLLTRMIMHL
RADMRLYGINSEEGRVRQRASVEEHYEMIDLAVKQQPDAIVALITRHIESWKPLFAAAL
>SEQF2266_AEE65915.1 delta-1-pyrroline-5-carboxylate dehydrogenase precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPSVNSLMNTSHIANEPVLDYRPGSAERQCLANALDALRVAQSHVPLVIGGQRQRGVAARALHCPHDHGHTLGMVEQAD
ELTAGAAVQAAVAAQAEWAAMPFGERAAIFLRAAELLAGPWRQTLNAATMAGQSKTVHQAEIDSACELIDFLRFNVAFAE
RLQQSQPLSTHGALNRLDYRPLEGFVYAVTPFNFTAIGGNLPCAPALMGNTVVWKPAFTASLSNYLILELLEAAGLPPGV
INFVPGDSAAVSAAVLRSADFAGLHFTGSTAVFDGLWQQVARNLPGYRTYPRLVGETGGKDFVLAHASADPETLGVALLR
GAFEYQGQKCSAASRAYVPASLWPRARQALLDNLATVRMGDVADFGNFMGALIDRKAYERVMRYIDRAPAQGSTVLAGGR
GDDRVGYFVQPTVIEAADPKAATMQEEIFGPVLSVHVYPDAGWNDVLALVDQTSPYSLTGAVFANDRQAIGQAAAALRFA
AGNFYVNDKPTGAVVGQQPFGGTRRSGTNDKAGSMLNLQRWVSPRTVKETWVPARHYGYPSMDDAA
>SEQF2266_AEE65916.1 short-chain fatty acids transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNNHLAAAAPAQGRQAIASPMERFSQAMVAWAEKWFPDAYVFVVVACAVVALGAVLHGGDPLAVSKAFGEGFWSIIPFT
MQMAMVAITGYVLALSPPVARLLRALAHVPSTPRGAVVFIGTLSILLSLVNWGLSLIFSGLLVREMARRTDLRLDYRAAG
AAGYLGLGCGFTLGMSSSAAQLQATPASIPASLMPITGVIGFSETILTWQNLVVVILVTVVSGLVCYFTAPSPERSLTAQ
DLGVDLTEPEAQAAQRQRPGDYLEFSPWLTVAVVGLASGWLYLTFRSGNPFITMSQLNTYNFVFLLLGLLLHWRPRSFLE
SFGRAMPSIGGVMLQFPFYGGIGYVLTKVANVQGHTLSDAIAHWFVSLAHDSSVFSILVSIYSAFLGFFIPSAGGKWVIE
APYIMDAANQIQAHLGWTVMVYNIAETLPNFINPFWMLPLLGILRLKSKDLVGYTAMQFLVHFPIVVAAGAILMHTFSYV
PPVIPGQ
>SEQF2266_AEE65917.1 putative molybdopterin oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGKGNMKQVTGYCTLCRSRCGSVNHVENGRLVAVTPLAGHPTGGALCAKGRAAPEMMAESHRLLRPLRRTNPRGAADPGW
REIEWSEALDEVAARLAVARRRDGAESVAFAVTTPSGTPMVDSFEWVERFVRVFGSPNLIYAVEVCGWHKDYAHALTFGR
GIGVPDLEHTDTMLLWGHNPARTWLAQAARIAAARQRGARVVVVDPNREGSSQQADLWLRVRPGADGALALGAIRHLLHT
GRFDHDFVARWSNGPYLVDGASGALLRAVDLWPDADPAARVVMQDGSPAASGRGADTARAELFGSWTLRLHDGRACEAVT
VMHALRVAVERYTPDEVARLAWLDEAELAQFNAIFENAPRLSYHSWTGVGQHTNATQTDRAIATLYALTGACDRKGGNLW
TVAPPYRAVNGYRELLSPVQRAKALGLDELPLGPPSLGWITARDFCRAVLQQDPYPVRTLVSFGSNLLVSQAETARNLEA
LQALDFHVHVDMSMNPTAMNADIVLPANMPWEREALKLGFEITQAAVEHVQLRPRMVEPAGESRADYEIVLELARRLGLR
DAFFGADMDACWNHQLAPLGIDVQALRRQPEGIRFPQPFVHEKYKAVRDGQPVGFPTQDGRVQIHCAALRDIGQPALPVH
VEPADTPARHAGAYPLVMSTAKSGWFVHSSHRYVASLRRKSPEPQVYLSVQAARARGIASGDWVRVRTPYGEVALRAKIN
ADLHENVAIAEFGWWQGCEGLGRVDGAIVGPASSNINAIMTDRHRDPVSGSVPLRATVCDIVRDDARNRGSWSGAREFVL
AQKRGIAHDVAEFRLLPCDAQALPDFLPGQHVIVSMPGGAARRAYSLTGPNREPAHLSIAVRRVRDGDGPAGVMSNALHE
LAEGARVLLSAPAGVFTPPLRTARPVILMASGIGITPFHGYLEALAQDAGPAPSVLLVHACRDGSSHPYGAELKRLAQRI
GSVCTLTVYAEPASDDAPGRDYQQRGRLDFAWLPPATVAARPLVYLCGSPGFLAFCTDALAARGIPRFDIFSETFTSEKR
VPATLAPQPIEIEAEQGGFTWDPSAGTLLDAAERAGLSLPSGCRVGQCESCAMHIVSGQVAHLIDFDGSADTCLTCQAVP
ITPLTLRR
>SEQF2266_AEE65918.1 hypothetical protein BPTD_0447 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSARNVVFPAGRQALYDRNRYSPAIRSNGFLFVSGQVGSQEDGSPKQGLQEQVRQAFDNLNAILAAAGCSFEDVVDVTVF
MVDPQSRFEQIWEVVPEYWGQAPHPTLTAVGVTWLYGFDFEIKVIAKLPRAGEG
>SEQF2266_AEE65919.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDRFDAMRAFARVVETGSFTKAADTLHMSKTSVTQLVQQLEARLRVRLLNRTTRKVNATADGAAYYERVQQLLADLEDAE
TSLSGASATPRGRLRVDVPSPFASTILVPALPAFQARYPDILLHLGVSDREVDLIDENVDCVIRGGQISNLSLAARHVGD
LQLGVYAAPGYLARAGVPAHPGELQDARHRIVGFSWSRARRLFPCAMQRADERIEVAGRHALLLDEGNAYLAAGLAGMGV
IGVPTYMAEAHVERGALIRLFGDWRLDPMPLYIAYPQNRHVSAKLRAFIDWIVELMARHAPVTDAPPPRRSARLPGGPDA
APPDITGA
>SEQF2266_AEE65920.1 putative dehydratase/racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLDFLKGVRVIESSAFIAAPLAGLTLAQFGAEVIRLDMTGGGIDYERMPRMPGGTSLYWTGLNKQKRSVALDLRKPEGR
DLARKLVCAPGPDAGILLTNIGVSWLSHAALAEGRPDVITCTIEGNADGSSAVDYTVNCATGYPHATGDGREPVNSPLPA
WDACCGYQAAMAVVSVVLRRRQTGQGAELRLALSDVAFALMSHLGTLAQAELLGEDREPLGNHLYGAFGRDFVTRDGNRV
MVAAISKGQWQSLVRTCGLAEAVAAIEARTGAKLAEEAQRFAHRDAIAAACEPWFRARMLAQVRTALDAGGVCWGLYQTA
TQMLARDGRAGSANPLFERIATAGAGEHWALGTSVREPRAMRRPTQGASRLGQHTDQVLGELLGLSARQLSDLHAAGVVA
GPSGDPRGAH
>SEQF2266_AEE65921.1 hypothetical protein BPTD_0451 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMDAKSMLLARGRLLEDFKTGDQYAHWPGRTITEADNIQFSLLTMNRHPTHCDHHYASQTEFGKPLVNSGLTLAIVLGM
SVDDISANAVANLGWQEIELLAPVHPGDTVYARSEVLSVRESKSRPGQGVVTVRTEGVRADGVVFMRFVRSCLVPSRASL
AGAR
>SEQF2266_AEE65922.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGKEKSRPLPNINLKLLHTFMLVAEHCSFRQAAELSHRSQAAVTGQIKQLEAQLGVDLFHRTTRQVRLTAEGAQLLESAR
RAAHEMENGLRQIQETVDLKRGRIFLSCSTTVSSTRLAPILAAFERDYPGVEVFVRELTSGDMFETVRREQADFGIGPIM
ELPEFDFEPILTENLYAVVPRNLFPDTAEQITLARLASMPLLLLNPGTALRALIDDTARSRGLTINAKFQFSQAQTLISM
ATAGLGAAVLPAMVLPAKPHKDVQVLPIASPRMTRDVAIVRLRHRKLTPAAARLAQLVRDLIHGPLGRRTARATTRRPSA
>SEQF2266_AEE65923.1 hypothetical protein BPTD_0453 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQSFYQEPAVAADLKEAPHPPKALSGLRVLDIATFLAAPFCGTIMADFGADVIKIEQPRGGDSLRKFGTPSPCGDTYMWM
SEARNKRFVTLDLRTPEGAALFKELVRESDVVLENFRPGTLEKWGLGYDVLSELNPGLILLRVSAYGQDGPKREEPGFAR
IAHAFGGLAHLAGEPDGPPVVPGSTSLADYISGLWGAIGVLMALQARNHTGLGQVVDIGLYESVFRLLDELAPVYAATGF
VRRRLGADVPNVAPHSHYQTRCGQWVAIACSNDRMFERLASAMGAPGLAGDARFATAAARAENRQAINALVAAWSARFDL
QALLDLCRNEGVPCSKVYSIEDIFQDEQYRARGNLMEVDDPRIGKTVLPASVPRLSGTPARFLRAGGALGQDNAGVYEEL
LGVCGERLAALRQTGVV
>SEQF2266_AEE65924.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE65925.1 putative sulfite oxidase subunit YedZ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAAPLTARAIGRIKPLLFVAGLLPFARWFWLGANDGLSANPVEFLTRSSGTWTLVCLLVTLAITPLRRLTGQPALVRLR
RMCGLFAFFYGSLHFLAWVWWDRGLDPVSMLQDVGERPFITVGFAAFVLMAALAATSTQWAMRKLGKRWQTLHRAVYAIG
LLAILHFWWHKAGKNDLQQPLLYGSVLALLLGWRVAAWWRRRGAAR
>SEQF2266_AEE65926.1 putative sulfite oxidase subunit YedY [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIRKPSDIPSSQITPETVWQGRRDWIARAGLAAAALGLPGWAQRAAFAQDAALPGAPNSRYAVVDKPTSFKDVTTYNNY
YEFGLDKGDPAAHAGRLRTWPWEIAIEGEVGKPGVYAIDDLLKLAPMEERIYRLRCVEGWSMVIPWVGYSLSTLLQRVEP
TGNAKYVEFVTAVQRDTMPGVRSSVLDWPYVEALRLDEALHPLTMLVFGVYGKVLPNQNGAPVRLAVPWKYGFKSAKSLV
AIRLVEKQPVSSWMNAAPQEYGFYANVNPDVPHPRWSQATERRIGEDGLFSPKRKTLMFNGYAEQVASLYQGLDLRANY
>SEQF2266_AEE65927.1 hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGYSLVVFDWDGTLMDSTHSIVAAIQGACRDLDLPVPSASSASWVIGLSLESALRRAVPELTQAMVPRFLERYRTHYLLR
DSELRLFEGVRELLADLASQDVRLAVATGKSRVGLNRALAATGLGPLFDATRTADETFSKPHPAMLQELMHELGHEADAV
VMVGDTSHDLQMAANAGVHGLGVAYGAHTLAELEACAPQAVVDSVAVLREWLLARSPGRIESV
>SEQF2266_AEE65928.1 ribosomal large subunit pseudouridine synthase C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKETSPGTTPPAVRMLAIGPEHDGQRIDNFLLRLCKGVPKSHIYKAIRGGEVRVNKGRISAEYRLVEGDVVRVPPLRLP
DPGATRPVPGAEFPVVYEDDALLVIDKPAGVAVHGGSGVSFGVIEQLRAARPQARFLELVHRLDRETSGLLMLAKKRSAL
LALHAMLREGKGDKHYLALVEGDWVNDRQHIRLALTKWTTQSGERRVRVDQAGQAAHTIVTLRKRFGGYSLVDAELRTGR
THQIRVHLASSGFPIVGDDKCGTDEIRAAFARRGFGRMFLHAHQLTLPHPLTGETLRLTADLPPACLKLLKQLETA
>SEQF2266_AEE65929.1 ribonuclease E [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRMLFNATHQEELRVAIVDGQKLIDLDIETAGREQRKGNIYKGVITRIEPGLEACFVNYGEDRHGFLPFKEVARSFFKE
GVDVRTARIQDALREGQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRVEGEDRQELRDTMEQLDVP
QGMSIIARTAGIGRNVDELQWDLSYLLQLWTAIDGAARDNAAPILIYLESSLVIRAIRDYFSPEIGEILIDTDEIADQAT
AFMSVVIPDNVQRVKRYRDDIPLFSRFQIEHQIETAYSRTVQLPSGGAVVIDHTEALVAVDVNSARSTRGADIEETALRT
NLEAAEEVARQLRLRDLGGLIVIDFIDMEDSKNQRAVEQRLRDALHFDRARVQMGKISRFGLMELSRQRLRPALNEGSHI
TCPRCNGTGVIRDAESSALHVLRLLQEEAMKENTAAVHAQVPVDVATFLLNEKRADITKMEARLKVNLVLIPNKHLETPH
HHIERLRHDDPRLEETKTSFELAEAPATDLTWQPREHEIKARPEALVKGITPAQPAPVSTPAPAKAPAAAAAAQGGLGGW
FKRLTSWLGGSAEPAKTETKSEDEKRGANRARRAHDGQNRRGERHGSDRNRHRRNEPRGEHAESGDARHHVRGGRRQEER
GERGERGQKEARTEREQTQQQQAAGQPRQERPSTAETGEEGGRGRGRGRRGRGRGRREEGQTDTPMTEQENMVAALAETV
ATALPEKRQAAPAPAAAAAAALTVAEAASSNEQAPVTEDADGIDGIDANADAGAETGTDPERKRRRRRSRRGRRSQEDGS
TVNAEGVEGADDEQADAPAGVADIETPAQPAEPETVAAPVAVSVAADEPAATIETAAAEPAAPQATEAPQAEPVVAAADT
APQAVQPVQAELTPVETPQAQAQPAEPAAAAPVETAPVETAPVETAPVETTPVEAPVKPAEQAAAPVEAEAPVAQPEKTP
EPAAVRPAAAIVVPAQAAAPATGALHDVLDAAGLTWVETDPERHAQTQMRIAAAATPARLGRERKPVASVSNEPLVQVET
RH
>SEQF2266_AEE65930.1 choloylglycine hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIFRRSRPGTIGAVTLLCASLLAMPASSACTRFVYHGANDEVITARSMDWKVDVGTNLWAFPRGMQRSGQAGPNSIQWTS
KHGSVIASGYDISTTDGMNEAGLVANVLWLAESSYPEYDGKTPGLTLAAWAQYVLDNFASVREAVDTLASEPFTVVTDNV
PGEQRPATLHLSLSDASGDSAIIEYIDGKQVIHHNRAYQVMTNSPTFDKQLALNEYWKQIGGTVMLPGTNRASDRYARAY
FYVNAIPKSEDPVEAIASVFSVIRNVSVPYGITTPDQPNISSTRWRTVADHKRKRYFFESALTPNIFWIDLGALDFSAES
GKVMKLDLGPDQAHIYSGQANAHFEQAAPFKFLGL
>SEQF2266_AEE65931.1 3,4-dihydroxy-2-butanone 4-phosphate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNVVPTPVFPLFAQPFATRLERALQHLRIGRPVILMDDFDRENEADLIVAADKLTVPVMAQLIRDGSGIVCLCLPGETL
DRLELPPMVDSNRSRYSTAFTVSIEAREGVTTGVSAVDRVTTIRAAIAPGARSGDVVSPGHVFPLRAQPGGVLTRRGHTE
GSVDLAALAGLRPAGVLCELMNADGTMMRGASLERYAAKEGLVALAIDELAAHLQARGATGAPAELAVAA
>SEQF2266_AEE65932.1 hypothetical protein BPTD_0463 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPMTEIIKPWHSVRRSRLHGNGVFATRKIPAGTRIIEYGGKRISAEEADRRHPTNPDDPFHTFFFSLSSGRVIDGGDEG
NDARWINHSCDPNCEAQEGRHGKRVYIVALRDIARGEELFYDYGLVLDGRITRKLKEGYRCLCGTTPCRGTMLALPEKKK
TKARSAEKA
>SEQF2266_AEE65933.1 hypothetical protein BPTD_0464 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWLPKFRCSQIVMIVRPRPTAWGLLFILRGSVIPHIAAKVAVIVALSCVVAWLHARQWFAPGHLNAVPFSLFGLALSVFL
GFRNNVCYDRWWEARKQWAELSAQCRSLARETAAVLSGAADAPRQARIVRRLIGFNHALVARLRGGDPLTAARPWLPDAE
SMALAGHRNVPDAILRAVTGDLHEGGPQRRYGEVVYQGLQQRVLACAQVQAACERIKTTPTPFAYSLLLHRTAWLFCLLL
PFGLVGTLGPLTPLAVAFVAYTFFGLDALGDELEEPFGLAENDLPLAALARDLEIDLLEGLGAHPLPAPLLPRGYVLT
>SEQF2266_AEE65934.1 transcription regulator AsnC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLDKFDLAILKALQDNARASLNDIGAAVGLSSTPCWNRIKRMEGAGIIRGYTVDIDPASIGFTDTVIVHVTLESHSEET
LYEFGRALAQIPEVLEAFLVSGDYDYYIRIAVRDTRDYERLLHERLYRIPGIRHSKSCFVLRSLKETRLPLTPPPEQA
>SEQF2266_AEE65935.1 acetolactate synthase large subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVSMNDRLHTSTLSALQQVEHAAAVNGAKILLHTLIERGVDTVFGYPGGAVLPLYDALYAEPRLRHVLVRHEQAAVHAAE
GYARTTGRPGVVFVTSGPGMANTTSGLLDAMCDSVPVLCISGQVSTAAIGTDAFQECDAIGISRSVTKWNTQIRAVQDVA
EVVGRAFDLTRQGRPGPVLVDFPKDIQLASPADAPQGEADPARRQLAALRARRQGGKAATRVPQGAVRRAAALLAQARRP
VFYGGGGLVNSGPQACAAFTELVRQSGAPCTLTLMGLGAFPASDPQFVGMLGMHGTLEANLAMHNADLVVCIGVRFDDRI
TGKLSEFCPHARKIHIDIDPASINKVVRVDVALVGDCLPLVQALRDELAASPLPAQRLGPWWQRIDTWRARDCLAYTPAA
DEILPQHLMHRLGAALDGRDAIVSTDVGQHQMWAAQYLRFDRPNRWLTSGGAGTMGYGVPAAIGAQIAHPGKTVVCVSGD
ASVLMNIQELSTAMQHDVPVKIVLCNNGYMGMVRQWQELIHGGRYSHSYNASLPDFVALARAFGWGAARVERPQDLDAAL
AACLEHPGPYFLDVAVAEQENCFPMMPAGHGHHRMMLADGQWYEEPPLPESPSPQA
>SEQF2266_AEE65936.1 3-ketoacyl-(acyl-carrier-protein) reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLNGKTAIVTGAGSGFGEGIAAAFAREGAKVAVADINEAGGQRVAAAINAAGGQAVFVRADVSDNAAVANLLAATLKAF
DGLDIVVNNAGTTHRNRPMLEVEEDEFDRIYAINVKSIYLTAKHMVPYFRAHGGGSFINIASTAAIRPRPGLTWYNGSKG
AVVTTSKSMAAELGPDNIRVNCVNPVIGATGLLADFMGVPDTPENRKRFLATIPLGRFSTPQDIANACLYLASDETAFIT
GACLEVDGGRCV
>SEQF2266_AEE65937.1 aldehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQHFIDNASVPGSSGERIPVIDPSTGQEFDSIARGNAADIDLAVQAARRAYEGAWGRLSAAERGRLMLALSLKVLEHRD
ELTALESRDCGKPLKQARADVIAIARYFEYYGGAADKLHGETIPYQQGYTVLTLREPHGVTGHVVPWNYPLQIFGRSVGA
ALAAGNACVVKPAEDACLSLLRVAELAAETGFPAGALNIVTGYGHEAGDALTRHPGIDHISFTGSPRVGVLVTQTAAERH
VPVTLELGGKSPQIVFADADLDALVPVAVNAIVQNAGQTCSAGSRLLVERGAYERVLERLGAAFAALRAGPAQSDLDCGP
LIRKTQQERVRGFLDLARGDGIATVAQGRIVPEAPAEGYYQAPTLLRDVPVDHPLAQEEVFGPVLAAIPFDDEADAVRIA
NATEYGLAASVWTRDGGRQLRIARKVRSGQVFINNYGAGGGIELPFGGVKASGHGREKGFEALYGFTVLKTISIKHD
>SEQF2266_AEE65938.1 gluconate 5-dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISLPYLQRFALSGQVALVTGSARGLGLRIAQALAGSGAHVLINGRDAHAVEAAVSDLRQQGLRASAQPFDVSDEQAMEQ
AFARIDAEHGRLDILVNNVGARNRKPLAETSPAEIRAMMDTNLIAGILLARLAAQRMMRQRYGRLIAITSVAGELARAND
AVYPAAKQGLTGMMRALAVEFGGHGITSNAIAPGAFATETNAAIANDPQAGAAMAARNPTGRWGDPEEIAGAAVFLASPA
ASYVNGHVLVVDGGLSVQF
>SEQF2266_AEE65939.1 ABC transporter, permease component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSDSPLPDALRDGVRRRLRVTAWQLLILALILGAWEGLTRVPWFVQNTIFDPFFISQPSRVAQRLWQWMQPGPQSVWPH
LWLTLQATLLGLAVGVGSGFVVGLALSRSRMLADVFNPFIVAFNSMPRIAFVPLITMFFELGMASKVVTSWFVVFFLVFF
NTYKGGRSVERELVDFCRTLGGSPRQILWRVRIPTAAAWTFAALPNAISFALIGVVLAEFVGSTTGMGYLMITALATLNA
TDMFAAVTLLSVVGIVLVYCVTWLERRLLHWAPEFRD
>SEQF2266_AEE65940.1 ABC-transporter, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMIELEHVGKVYQARNATVHAVGEVSLRIDDGEFVAIVGPSGCGKSTLLNMIAGFLPPTTGTVRVAGAPVAGQVPPALGY
IFQKDTLLPWFNVRKNVALGLRFQGVDSARIARRVDELLELGHLSGFANAYPHQLSGGMRRRVALLMSLAVEPRILLLDE
PFGALDTHTKTHLHRELGEIWRKLGQTIVMVTHDLDEAITLADRVVVLSGPPSRVLLDERIAIAHPRDVFTLRDTPQFTA
HMRSLWAVLGQQFRNAA
>SEQF2266_AEE65941.1 hypothetical protein BPTD_0472 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTALRSPRGATRRRFLAGSGALMAVGLAGSRLSWAQPALGRVAYGQGSIDPFFAAGYVALKQGYFAADELEVEYLNSQSG
PRTNQLLAAGQIVFGATAATAAPALTLAGKPAALVFGFDRKLTYANIIVRRADYESGKIRTLADLAGKRVGATQPQSSTW
LMALYLMQKAGVADKVDIRPLGDLATMLGALKTGSVSASMATLSMMEQAVQEGWGMPIFDATTEASWQEFMGGDVPGIAA
LTLQDTIQKRPEVVQAFVGALVKAQDFISANSAAAVTDLIYDDYLNAYARPAIEKTIGLYQQTVFLRDNIITEDAYARMT
AIMGDGRQFSNEELKKVPYSACVDMRFVRKARGL
>SEQF2266_AEE65942.1 DNA topoisomerase III [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKTLIIAEKPSVALDISRALGGFAREGDYFESDRYVLASSIGHLLSLVAPNDPVKGKWSFTHLPVIPPAFELGPTDKKS
AERLKLLVRLAKRKDVDAIINACDAGREGELIFRYIVQFAGVKKPIQRLWLQSMTQQAIRDAFANLRDDEQLKPLEAAAR
SRAEADWLVGINGTRAMTAFNSKDGGFFKTPVGRVQTPTLAIVNERENRIRSFVSRDYWEVHATFVAAAGLYEGRWIDPA
FRKDERDPEKRESRLWSLAAAQSVVAACRAQSGSVTEESKPSTQMSPALYDLTSLQREANGRFGFSAKTTLALAQTLYER
HKALTYPRTDSRYLPEDYINTVRQTMQVLAQGDSNAVGALSRHADTVLAQNWVKPNRRIFDNKKVSDHFAIIPTLQVPRD
LSEAEGKLYDLVLKRFLAVFFPAAEYRVTTRLTEVQGHRFKTEGKVLVTPGWLAVYGKEAQGEDANLVPVADGETVRAED
VEAVGLATKPPARYNEATLLSAMEGAGKLVDDEELREAMSERGLGTPATRAAIIEGLLNEAYLRRDGRDLVPTAKARQLM
ALLSGLDVSELTSPELTGEWEHKLKQIEQGALDRAAFMREIAQMTQVIVKRAKEYERDTVPGDYATLQTPCPKCGGVVKE
NYRRFACTQCDFSIGKHPGGRTFELPEVEELLAKREIGPLQGCISKMGRPFAAILRISGEYKLEFDFGQNDEEDNEAVDF
SGHTPVGACPKCSARVFEHGMSYVCEKLVGLQKSCDFRSGKVILQQEISREQMEKLLTAGRTDLLDGFVSSRTNRKFKAF
LVRQPDGKVGFEFEPRGDKPGRPGAAAKKAAGKTATKTAAKAPAKTAAKKAVKKAAPKKAATKTAAKKAAKKSAA
>SEQF2266_AEE65943.1 hypothetical protein BPTD_0474 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQVDTHQQAGSELYAWRQFLGRATLWLGVVLLGSAVVCWVAANWPAMTKIQRFAGAQGLLALSAVIAAWVAWRLREATGV
RRHGVGALLVLAGLFLGALLALLGQTYQTGADTWELFAWWALLLLPWALAGASQALWLLWALILNVAVALWLGERLLSWW
WSLSGAGFPALVLAALNLAMLACWEWVAHHRHVSTRVGPRVLALLAQGVLVAALLFDFGALADLASATGIAWIATTLGMG
FYYQQVRRDLVILALLAAAMICVSLRVVGAWLLELEPGVWAALPLAGLLMAEAVWAVRWLRRLGEQSTRAAVDAEPAGAS
AGNGLDPAEAGAPVLELAPEDARGAAETPWYVHGLLGLSAWLATWLLLLFVAASGIVASKEGALVAGLGLCIVAVAVLRT
DSGPFWRQCATAMGFAGQILVMVGLWDSASFASACFFILALGAVVYALTPDLLLRFLSGWMIALAGAGLIWRGLTPGMGD
KQLLGLLLEFDALRAAFVWLPVAVVGAWGAAVAFSLGHRWSRIRPQQLDPLGWALALAAQSMVWLAGGVTAMQLRALWAL
HPSTAVLTVAGVLLPVAVALSVLWPRRRQLTAGMLWGVPLALLVLALFWLPSPGVAFALAWLLLGFGLHKPRLTMLGVIS
LLAYLMIYYYQLQIPLLDKALWLAGGALLLFLGRLLVWLVPQWMRTAAPATRAPMGPPSRSLRWRVALVLAGLAVTLAVV
NGNIWQREALLAKGRVAILELAPVDPRSLMQGDYMALRFAAGEDIERWRNDRPADGQDAAAFAHIDGYVVLAPDERGVAR
PVRIQEQAAPRDGNEIVLRYRLRASGVRLVTNAYFFPEGEQQRYQRARYGEMRVDDRGTGLLVRMLGEDLNPL
>SEQF2266_AEE65944.1 hypothetical protein BPTD_0476 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFDILVYLFENYYTPQACPAADVLAKRLAAAGFEHEDIDDALGWLYGLAETTERCVELAHAPATGIRIYTDAEYQQLGTE
SIGFITFLESAGVLPAPLREIVIDRALASPETPISLSKIKIIALMVLWSQEAEIDNLVLEELLDDEGSRRLH
>SEQF2266_AEE65945.1 putative heme receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSPRPPAPWRAPLALAGLSLGCAAGAYGAPAPAQTVVTLPAQEVIGDSVAAARSVLRLPEIERAQADNFASLVDQLPGI
SMAGSPRPGGQSLNIWGMGDTEDVKIVLDGAPKGFEKYRQGSVFIEPELIRRIEVDKGPHNLVDGNGGFGGTVKIDTKDA
ADLLPPGARFGALAKYGRHSNDGQDIYSVALYGRTRADGADGLLYANRRDGGDLRRPDGTRFAYSRNNQRSLLAKVNLYP
DDAQTITLSAMRSNAAGWQPFAAKRDDLPAPSQADIDRYGLTEAWRRKLVHRDQLDQNYSAKWNIAPSAHPWVNLTLAYA
RSDTRQRDRRSSRASQSAFLGTLGNKSWVDYRDDRFDLSNESHVALGTAEHVLLAGLRWHRHRRDTLMYYPPGRGEPDYN
HGYFQPHYMPSGTQTVRSLYLQDAVTVGGLTVTPGVRYDHVANTGRPNDAPRYNNPAPVAGHDYRRVSYAGWTPHLGVVW
KAARGVALFADAGRTWRAPVIDEQYEVQYAKSNVSGSSRALRPERIVGLRAGAVLDYNDIATRGDSVQIRTTLFRNRGKH
EIFQRRGVACRGQAEGGAASDCPKPLSNYRNLPGYTIEGLELETYYDSPAMFASLSLSAMRGHRDASPRDPWGPRTWIAE
IPPVSARAMLGVKLPRLDMVLGWRGEFVRRQDRSPTDGDPLAGYWALPKTAGYALHGLFASWQPRHVKGLDVRLAADNLF
NRPYHPYLGEAVSGTGRNIKLSIAQRF
>SEQF2266_AEE65946.1 hypothetical protein BPTD_0478 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQIDHDKTQQLTEKYDSEIRFRPLDKTATWIVSILLVTLSIFHYYTAGFGLLREATHRGVHLAFVLSLIFLVFGFSKAHY
QREPKSTLLCPGGVPLYDWAIAIVLALSVLYIPYIFEDLAFRVGNPLPMDVAMGTILIVGLLEGTRRAMGWPLPIIAMVF
LAYAAFGPYFPGLLQHAGNNWPQIVNHMYLTSQGIYGVAVGVVATYVFHFVLFGVLATRIGLGQLFLDVASTIAGRYAGG
PAKVSVFGSAMFGMLSGSSVANAVTVGSLTIPAMIRIGYPRHFAAGVEAASSTGGQITPPIMGAAAFLMIEFLGIPYQQI
AIAGIFPAFLYFFGMFMQVHFEAKREGLRGLTEEEMPTLKASFKKRWPTLLPLIMLIGVLASGRTPYLAAFAGITGCIVV
GLLNPMQRLRLRDLYEAFETGAKYALAVGAAAGTVGLVIGVVTLTGVGFKISYIVISAAQAIAGGVGTIIPDVVANTQTL
TLIAALVMTGIVCILMGCGIPTTANYIIMVAVAAPTLVQLGVQPIAAHFFVFYFGILADITPPVALAAYAAAGMAGSDPF
KTGNTAFRLGITKLIVPFVFVFSPSLLISVQGFTWYDFFTTLVGCMVGLVLLSAAFSRYMLVEMKSWERWVCVVGALLTI
LPGLTSGLVGLAICIPVFLRQLAQLKLENGAKAA
>SEQF2266_AEE65947.1 hypothetical protein BPTD_0479 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMKSWIKTLTLALAVAGAATSANAQQFFRIGTGGTAGTYYPVGGMIANSISQPGKLIATAVASNGSVANINGILGGSLE
AGFTQSDVAYWAYSGTGTFDGKPKAQDLRLIATLYPESIHLVARKGSGIKTVADLRGKRVSMDEPGSGTLVDVRLILGAF
GMTDKDIKAEYLKPNQAGDKLKDGGLDAFFFVSGAPAGAISELASSGAGIELVPIVGPEIDKLRSQQEFFTPDTIAANTY
QNVGEVKTISINAQLVTSAKLPEQTVYDIVKALYSDATRKTLDNGHAKGKLITKENAVKGAGIPFHAGAEKYYKEVGLLK
>SEQF2266_AEE65948.1 low-specificity D-threonine aldolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNASVAPILPPAARAGQALCDVDTPSLALDLAAFERNLRVMQDWAERLGVALRPHAKAHKCPEVALRQLALGARGICCQK
VSEALPFVAAGVRDIHISNEVVGPVKLALLGELARQADISVCVDHPDNLEALAQAMERAGARVTVLVEVDVGQGRCGVTD
PQVVLALALARRADAAAGLRFGGLQAYHGSVQHMRTQADRAAVCAEVARAAAAHADALRAAGLACPTITGSGTGSAQFDA
ASGVFTELQAGSYPFMDADYGDNEWAETLRFEPSLYVLSTVMSTPAAGRVVLDAGLKSSTAECGPPRVAGRAGLTYLAAN
DEHGVARVEPGAPAPALGKMVRLVPSHVDPTFNLHDSLVVFRDDVVVDLWPIAARGLSR
>SEQF2266_AEE65949.1 hypothetical protein BPTD_0481 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRVFAGLCAGLALAAASFAAHADYPERPIRMLVPFPPGQATDIFARALAEKLGADLKQPIVVENRAGAGSNIGMGEAAR
ATPDGYTLVVAGSAAAVNQTLYKNINYSLTKDFAPVSGVFSVPLVFLATPASGIDSLQKLVTQARAHPGELAYASAGIGG
TQHLSAEMFKAAADIDIRHIPYKGSGPAQADFLGHQVPLMVDSVTAGLPHIKTGKAVPLAVTTAGRLAQLPDVPTVAESG
YPGFEAIGWAAVLAPAGTPPAVTELLSRHIGQALGSAELARFLRERGAEPMPTTPQATGQFIAAEVQKWGDAVRRSGAQV
D
>SEQF2266_AEE65950.1 acetylornithine transaminase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFSQFKVNALMEITARPDLVFVRGQGSWLEDHAGKRYLDFVQGWAVNTLGHCAPEMKRAMAEQADKLMNPSPAFYNLPS
IELAQRLTSASCFDRVFFANSGAEANEGAIKLARKWGRVNRNGAYKIITMNHGFHGRTLATMSASGKPGWDTMFAPQVEG
FPKAEINDLDSVRALIDAQTVAVMLEPVQGEAGVIPATREFMQGLRKLADEHGILFIVDEVQTGMGRTGSLFAYQQFDVI
PDIMTLAKGIGGGIPLAALLAREEVCVFAHGDQGGTYNGNPLCAAVGVAVFDTITAPGFMEAAQARTRQLSEGLLALSAK
WSLRGERGMGLLRALVLDRDDAPAIVEAARMLAPEGLLLNAPRGNLLRFMPALNVTEADMARMLEQLDGVIAAVRK
>SEQF2266_AEE65951.1 hypothetical protein BPTD_0483 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAMQDFRPGVYRHYKGDHYLALGLARADETDEVVVVYTRLYARAGLPMSTRLLRIWNETVDTGAGPQPRFAYVGHVTPEQ
G
>SEQF2266_AEE65952.1 biotin carboxylase subunit of acetyl-CoA carboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFSTLLIANRGEIACRVAATARRMGLRTVAVYSDADANARHVAACDVAVHIGGAEPRASYLRADAILQAARDTGAQAIHP
GYGFLSENEGFAEAVAQAGMVFVGPPAGAIAAMGSKSAAKALMERAGVPLVPGYHGEDQDPQFLRQQADAIGYPVLIKAS
AGGGGKGMRVVEESAAFADALASCQREASASFGDDRVLIERYLQKPRHIEIQVFADSHGNCVYLFERDCSVQRRHQKVIE
EAPAPGMTPERRRAMGEAAVAAARAVGYVGAGTVEFIAEPDGRFYFMEMNTRLQVEHPVTEMITGHDLVEWQLRVAASQP
LPAAQDELRLDGHAIEARIYAENPEKGFLPSIGTLAYLGLPAHTAFANGEVRVDGGVRMGDTITPYYDPMIAKLIVHGAD
REQARARMIQALAHTQAVGVQTNAAFLGRLMRDEAFATADLDTGLIERRRATLLPEPQPAGADVLALASAAVLVRQGLAQ
PQGEAGKTADPWDARDGWRLGGRYRQTLCWVDNGERRDIEITREGGQWRIGAAPAAGQAFSWHAQPSANPQLSYGLRITL
DGRESAGTVVLHAGKAYVFHDGATHILDLYDALAHAQDDAEGHGGGLTAPMPGKIISIAVAVGDKVEKGQALLVMEAMKM
EHTITAPAAGEVAGLFYAVGDQVGEGAALIEVK
>SEQF2266_AEE65953.1 carboxyltransferase subunit of acetyl-CoA carboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPMPIIESRIDTRSQDYADNARAMQAQLDDLNQKLARTAQGGSETARAKHVGRGKLLPRERVEQLVDPGSPFLELSPMAA
HGMYGDEAPGAGMITGVGRIAGTECVIVCNDATVKGGTYYPMTVKKHLRAQEIAAQNRLPCVYLVDSGGANLPRQDEVFP
DRDHFGRIFYNQAVMSSQGIAQIAVVMGSCTAGGAYVPAMCDESIIVRDQGTIFLGGPPLVKAATGEEVSAEDLGGGDVH
TRLSGVADHLAANDMHALQLARNAVARLNRAKPAALALAPVREPRYDASELNGIIPADTRKPYDVREVIARIVDGSEFDE
FKARYGTTLVTGFAHIHGMPVGIVANNGILFSESAQKGAHFIELCAQRKIPLVFLQNITGFMVGRKYENEGIARHGAKMV
TAVATAAVPKFTILIGGSFGAGNYGMCGRAYSPRMLFMWPNARISVMGGEQAASVLATVKRDGIEARGAQWSGAEEDAFK
QPIREQYEREGHPYYATARLWDDGIIAPADTRRVLGLALSAALNAPIEDTRFGVFRM
>SEQF2266_AEE65954.1 acetyl-CoA acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSFPSPARPWAACWACLSGLAAHELGSAAIKAAIERAGIKPEQVDEVIMGNVLQAGQGQAPARQAALGAGLPLGVGCTT
IHKVCGSGLKAAMFGHDLLTADSVDVVVAGGQESMSNAPYLLLKGRQGYRYGHNTVYDHMALDGLEDAYDRGKAMGVFAE
DCATKYSFTREQQDAFSLESLRRARAASEDGSFKWEITPVTVAGRKGDTVIDTDEAPTKAMPEKIPTLKPAFKKDGTVTA
ANSSSISDGAAAMVLMRASTAEKLGVKPLARIVAHAQHAQEPNWFTTAPVGALKNLFKKTGWQASDVDLYEINEAFAVVT
MATMKDFDLPHDKVNVHGGATALGHPIGASGARLMATLVGALRKTGGKRGVATLCIGGGEAVAMAIEML
>SEQF2266_AEE65955.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65956.1 metallo-beta-lactamase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPNEQKLQYPWDQTQPEPGVALVVAEGVKWIRMPLPFALDHINLWLLRDEIDGRQGWTIVDCGIARDEVKTIWEQVFEN
ELEGLPVLRVLVTHMHPDHIGLAHWLCERWNAPLWISMTDFMVASLWSRRTDGGASGGQAAVEHFARHGLTDTDAQEQIR
QRAGYYPNLVSAVPSRYTRLLHGDEVAIGGHPWRVIVGYGHAPEHVSLFSPAHKVLISSDMVLPRISTNVSVFDHEPDAN
PLPLYLRSLDRYDDLPADTVVLPSHGRPFVGLHERIAQQHAHHDERLAEVLQACATPQSTADIVPVLFKRKLDLHQLTFA
MGEALAHLHALYFEGKLKRRTDADGIVRFQAA
>SEQF2266_AEE65957.1 MerR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTWTISELAREFDITPRTIRFYEDQGIVSPLRDGRNRVYSTRDRARLKLALRGKRLGLLLSEIRSLIDMYDGPGDTAPQ
LRHYLTILAQHRATLTQQQRDIEDTLAEIAQQELQCQRLLAQKQ
>SEQF2266_AEE65958.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65959.1 AraC family transcription regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPKTRLYYAERLEPVLAWLAARPDADADLHRLAELACLSPYYFHRVYRALLGETVHATVQRMRLARASVALAQGKGSLR
QVADRAGYASEAAFSRAFSAQYGLPPGRYRAKRSSPFNPEELRMYPLTMEDFPGLSLAILAHQGDYQEIGNTFDRLALLA
AIQDLVRDGMQPPPRYIGVYYDDPAQVARDALRSRAGVSLPPGTAAPAPFEPLDIPAMRCAVLEYTGPYSEIEAPYNWLF
SQWLPASGQEPGDFPMFEEYLNDPKTTPAAQLKTRIYLPLA
>SEQF2266_AEE65960.1 L-lactate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQNLSTITCIEDLRVIAQKRVPRMFYDYADSGAWTESTYRANESDFQRIKLRQRVAVDMEGRSLRTTMAGSDAVMPVAI
APTGLTGMQHADGEILAARAAAEFGVPFTLSTMSICSIEDVAQGSGKPFWFQLYVMRDREFVGNLIDRAKAAGCSALVLT
LDLQILGQRHKDIKNGLSAPPRPTLRNLIDLAFKPRWCLGMLGTRRRTFGNIVGHAKGVTDLSSLSSWTAEQFDPRLSWD
DVEWIKRRWGGKLILKGILDAEDARLAAESGADALIVSNHGGRQLDGAVSSISALPAIAEAVGSRIEVWMDGGIRSGQDV
LKAVALGARGTMIGRAFLYGLGAYGQAGVTRALGILYKEMDVTMALCGHKHINQIDRGILMPGTYPQ
>SEQF2266_AEE65961.1 hypothetical protein BPTD_0498 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFKASLKALALCALAVLPMAAPAAQADWPAKPVTLVVPFPPGGSTDVIGRYFGARLGELLGQSIVVENRPGANTGIGATA
VARAPADSYTFMISGAPTYTTNSLLYANLNYDPIKSYEYVAIAASAPFVILTNPQTGIATVQDIVRKSASQPLSFGSFGT
ASTPHLAGEYLAQHGGAKLLHVPYRGSAPAMTDLIGNQIPLSIDTLVAALPQIRAGKVRAVALTSSARSPLLPELPTVAE
SGVAPYDFQTWFGIVAPHGTPQAVVQRMAQALQTMLAEPGTQARMRELGFEPEYVDAAGFRARVEQEMARNAGVIKAAGI
RIE
>SEQF2266_AEE65962.1 amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGWESICAMTALQLRAELAAGHLSAREILQAHLEAIEHWNPTVNAIVTLDVEGARRRAAAADQAQARGEPLGLLHGLPVA
HKDSFLTAGMRTTHGSPVFADFVPERSSLVVTRQQAAGAITLGKTNLPEFGAGSQTFNAVFGPTRNPYDPAMTAGGSSGG
AAAALACRMVLLADGTDMGGSLRNPASFCNVVGLRPSPGRVPMWPTAAPYNTLSVAGPMARTVADAALMLAALAGPDARD
PLTIDADPGLFLGALERDFAGTRVAYAPDWGGLPVDPAVGRVLQAQLPRWEELGCRVDQACPDFGQADSSFHALRGLAFA
INQGETVRRHRDRVKDTVIWNTELGLNQSGAVLAQAERDRAQLFERMHDFMQQYEFLIGPVSQVPPFSADQEYIQRIGDV
EMRNYIDWMRSGYYLSLTGHPAISVPCGFTETGLPIGIQIVGRYRDERGVLQLAHAFEQLTQCWRQAPALRAPAA
>SEQF2266_AEE65963.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHNAGKQVAAPLETPMPAATAALLAERADHPLYVASVEKGMRVLEAFDAARDSLSLTDIVQLTGMGKSAAQRFTHTWEAL
GYLAKDPQSRRYRLGPKVVELSYYFLRSDHLVSLAAPHLVALREHCGLAVNMSVLSGDDMIYLLRLPSRQLTLVEMLPGR
RMPAWSNSAGRMLLSQRDDASVRDLLARAAPQLYTPRTQTDPQALLAEIRQAREDGYAITQDQVLLNQMGVATLLRDERR
QPLAAISVTAAADEYPRARLVAEIVPQMLKAAYAICGA
>SEQF2266_AEE65964.1 DNA gyrase subunit B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDQQNTTPENTGYGADSIKMLKGLEAVRKRPGMYIGDTSDGTGLHHMVFEVVDNAIDEALAGHCDDIVVTIHTDNSISV
TDNGRGIPTDIHKDDEFGRSAAEIVMTELHAGGKFDQNSYKVSGGLHGVGVSCVNALSEWLRLTIRRNGQVHQMEFRQGQ
RVAPLTATGPTDKRGTEVRFLADPAIFTNIEYHYEILSKRLRELSFLNNGVKVRLVDQRQGKEENFAFSGGVKGFVEYIN
RSKSVLHLNVFAVSAESSAGGVLVGVEVAMQWNDSYSESVLCFTNNIPQRDGGTHLTGLRAAMTRVLNKYIADNELAKKA
KVETTGDDMREGLACVLSVKVPEPKFSSQTKDKLVSSEVRPAVEDAVARTLETWLLEHPNDAKALCGKIVEAARAREAAR
KAREMTRRKSVLEGAGLPGKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKARFDRLIASEQ
IATLITALGTSIGPDFNIDKLRYHRLIIMTDADVDGAHIRTLLLTLLYRQMPELVARGHVYIAQPPLYKVKVGRDERYLK
DDQEEAQFMLQLALKDAELIPSQGAAPIRGEALNELARQYVLADAVISRLSRVFDVAALSALAEGVEIDLEDAERTKASA
QRLSDALHAASPANGVEVVAEYDDVAEKHRLAVRRMHHGNVRVSVLDADFVRGADYAVLAKSAKTFLGLVGAGAIVARGE
GDKRKEQFVSDFREAMQWLRGEAERGLSKQRYKGLGEMNPEQLWETTMDPKVRRLLRVQIEDAIAADEVFTTLMGDDVEP
RRAFIETHALSAGNIDA
>SEQF2266_AEE65965.1 DNA polymerase III subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVGPENESTTVAARKLLDIL
KALPDTGEVKLGLASNKLSVQSAKSRFALQTLAASEFPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGM
LLVFEPGRVRAVATDGHRLAHCATEADGIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVELVSKLVE
GKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKISSSNAEQEEAQEEIDIDYSFEPLDVG
FNVSYLLDVLSNIKAENVQWSVMPDANASALITLPDDEQFKYVVMPMRI
>SEQF2266_AEE65966.1 chromosomal replication initiation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKEFWQTCVSRLEQELPPQQISAWIRPLVPLAYDEAQAVLRVAAPNRFKLDWVRKNFSHQIEALAAEWYQRPVQVTFELP
GTSSAPRIPMAVPRPVAVSVPAVVAAVQQASEPAPPAPASADAANIVYERSRLNTDLTFENFVTGKANQLARAAALQVAE
NPGTSYNPLFLYGGVGLGKTHLIHAIGNAMVAAGTGVRVRYVHADQYVSDVVKAYQRKAFDDFKRYYHSLDLLLIDDIQF
FSGKNRTQEEFFYAFEAMVAQRKQIIITSDTYPKELSGIDSRLISRFDSGLTVAIEPPELEMRVAILLRKAESEGVPMPE
EVAFFIAKHLRSNVRELEGALRKVLAYARFHGRDVLTVDVCKEALKDLLSVSNGQITVENIQKTVADFYKIKVADMYSKR
RPANIALPRQVAMYLAKELTQKSLPEIGDLFGGRDHTTVLHAVRKISDARAKQAELNHTLHVLEQTLKG
>SEQF2266_AEE65967.1 50S ribosomal protein L34 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRTYQPSVTRRKRTHGFRVRMKTRAGRAILNARRAKGRKRLAV
>SEQF2266_AEE65968.1 ribonuclease P [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRATLPAEARLHRPSEFAAALKGRRLARGAFFIVSASPCAPADDQPARARLGLVIAKRFAARAVTRNTLKRVIREAFRA
RRLALPAQDYVVRLHSKLTPASLTALKRSARAEVDAHFTRIAR
>SEQF2266_AEE65969.1 hypothetical protein BPTD_0506 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRRLLIAPIRFYRYFLSPWVGRQCRFTPTCSAYAIEAIERHGAWRGLWLAARRIGRCHPWSPGGYDPVPPGHGAGAQAC
CAHRHRTEPD
>SEQF2266_AEE65970.1 putative inner membrane protein translocase component YidC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDIRRTVLWMIFSFSLLLLWNNWQIHNGKPSLFGGPAPEAAATQQPKADANGTAASSTASIPSSPAAAPAAASVPGAAAP
AAAKSEQVVITTDVLRLTFDSNGAQLIRAELLKYPSSSQSDKPTVLMDRSADLVYVAQTGVVGAPQGESFPTHQTPFHLV
SSERSLTGDTLDVVFEAESGGLKVTKTYTLHRGRYDVDVRHAMANTGGAPLNPALYLQLERDGTDPAGTSSFYHTFTGVA
VYSEQDKFQKVTFSDIEKKKGTYIKQADNGWIGIVQHYFATAWIPAQGKQRTNELLQVQQNLYAARTIEAVGTIAPGSSA
NVDAHLWVGPQDQKAMAAVAPGLELVVDYGWLTIIAKPLFTLMTWLHGLLGNWGWTIVALTVIIKAVFFPLAAASYRSMA
RMKQVAPRLQALKEKYGDDRQKLNQAMMEMYRTEKINPLGGCLPMVVQIPVFIALYWVLLASVEMRGAPWILWVHDLSVR
DPFFILPAIMMATMFLQIKLNPTPPDPVQAKVMMIMPLVFGGMMFFFPAGLVLYWCVNNTLSIAQQWTITRNLERQAAAA
ANR
>SEQF2266_AEE65971.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65972.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQDLNDLYYFAQVVEQGGFSAASRVLDVPKSRLSRRISQLEDRLGVRLLQRTTRRLRLTTAGERYLHYCQEMTASARAAE
DAMRQLQSAPAGPVVVSCPVSIAQQMLAPLLPEFLDAWPSVSVQLLVTNRRVDVIREGVDLALRVRTKLDTDAELVVKHL
GIASGTLVASPAYLQRHGTPETPQELASHRTLSFNDPQNEVRWPLTNQRGESVEVAVQPVLASNDFIVLTQAAVRGRGIA
LLPSMASEAELRRGELVRVLPDWRSPEGIVHCIYPSRRGMMPAVRAFLDFLAKRVPPLVRQSDTARP
>SEQF2266_AEE65973.1 hypothetical protein BPTD_0511 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFPLLIRNLRHLLGLPVGADEPVTSLAIDEQWAVHIGCEDDMVTVLLPLGPAPDPLPGAALVNSLAQWPPVLLDLSEQGE
AILWAREHVGRLTAEQLHALLVRVAARAAALMAPAAAPPAPQDTAEVAGRKA
>SEQF2266_AEE65974.1 hypothetical protein BPTD_0512 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSNNVNPVVGLSYRPLPETPPSGQAAAHPSMRLLEPNNDEFVRSVASPRLHHSSEALREVKHDVRQFQASGDRSLQQLR
DLEVALNHWEASQPREFAKRGGLVAELRTAIDAYKQQLHEQAPSHANLDVKWLDGLRAGSMALQGDVKVWMQNLEDLHTR
RPDEFAARLQQSTDALYSHLEAQWAKQHGTPPTASDVAGMPQWQEYTAMLRERFAGLDTIRPNLTAEENGVAILKTQTQL
LALQRAQEALQASLADGVSHQGDVGLLRTQLLAGMVEGLIALQQADDDSALWSRPSAADSGGRLSVEAGAKASTDFEAPA
SKGELLRGKGISGEAVLEAFANIEMSVSGSRAGAAGEAEGSLRLYGESTARAEVSGSFEPFALSGSIGREEADGDTAASA
NPVLSLNVSAELSSKLGLEAQGSVTLGSLLKLDAEGRAEVGASAEVSGAAAIDKRSDGLSVRLEAQAEAFAGLKAEGTLT
ANLLHSKYADAHGLTASVTGSAANVGLGATAEGKLVASPGQFEMGGEVGTTLGVGGNIGWNSKVDVNASTAYAYELASAA
MARFDALRASQLDHDAKTSGNESQLNRLAANLQSHIDATSQKLDALNSASRIRKVDGFAAGDGAQAAAGLAAQMALVGTG
ADLSHDIKITALNLRA
>SEQF2266_AEE65975.1 C-terminal region of two component sensor kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKYYRIEEIDPPWPENLPGMPREPGRALSGMPEMPRPPYWPRSNGQPVFFDAVYRNDPVRAVAVVRDLYYRNQHRQVLV
VVAESIGKRVEAEASAQRQEVLRDTRMLALVALLVWWGVNWALRPLVRLRNDIRTRRPDDLTPLDATRVPSEVAPLVEAV
NHHIARHRRVLDEQSQFLADASHQLRTPLAIMLTQAQYALRERDPVRAQEGLRAIVDQLGRTRCLTEQLLSLAHASQADA
PPRQELDLNDVARDVVLQYLPLAHEKQQDLGWVDARGDEAEGASDTAVVPVWGSEVELHEALSNLVHNAINYAPAGAHIT
VSVVRYPGRAEVQVADDGPGIEPLLRARAFARFDRMAGDRHASSSGSGLGLSIARAYARRNDGDIELRDGEPNAQGGIGL
CAVFWIPLYDQSAPADEAEAFRRSG
>SEQF2266_AEE65976.1 integrase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGTYRKRGDTWRAEINKAGVRESKTFPTKREAQEWAAARETELATIAVGGITPKSVAQVLQRYCDEISPRNKGHRWERVR
IARFLKEEADLCAKLIHTISTADLGAWRDRRLAQVQPVSVRRDIALLRAAWGYARREWRNLKDDPWLDLTMPPEGRHRER
IYTQDEVDRLVLALGWEEGQKVVTARQQTAVCFLLSLETAMRSGELLSLEHSQVDLKKRVAQLDQTKNGDRRAVPLSSRA
VALFKSLAGLNDVKVFTITPALRDVYFRQGKAIAEVDGATFHDARATALTRLSKKLSILELARMVGHRDPRSLMIYYRES
AADIAKKLD
>SEQF2266_AEE65977.1 hypothetical protein BPTD_0515 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEDRFITHTEIASLLQLNPAHVRDRLTKRKDFPRPFIFGGARRWKYSEVEDWIDGRRQAPDGRRAA
>SEQF2266_AEE65978.1 hypothetical protein BPTD_0516 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDLPYLALLGIAVGAVVVLALALHRWLNREIEKEEREE
>SEQF2266_AEE65979.1 hypothetical protein BPTD_0517 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELAAKAAGMGVWPGTGFQAHMLFTRPAKADPDGKVAGIEWNPLTDDGDALRLAVKLRLWVHVDDYGGSARRPGDTWFGC
AAHKYGGIEAATRRAIVRAAAEIGAKMQEAAHA
>SEQF2266_AEE65980.1 hypothetical protein BPTD_0518 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMENQHQKIKGYRDLSQAEIDAMNEAKALAEQCGALVQKLRAPVADERAPHIKALQDLRLGVEMDQHCMEDGDAKLAALD
AAITALRWSAGALQALNIEADKITLDGETRTVGDILDHADRALASAPVAGEAQPVIHQHGFAADNQRLRAINESLDKQLE
EVMTEHDEYHDMADKLANAIAHHLLVEIGEHSSSNCPWMRALDAIENAAPQASAYGHKPEPLDTSPGHSAPQAPAGWRWT
LHPAGLHPDVYAAAAARDSAEDVRNAALEEAAQVLDRLHYENRRYHTKFRQAANAVRTLKSTPAPTAAEDSQASEAVRDA
DIPASLAQLVAAVKGMTKLYPHVWDRTDGGLVVFPENVARFDAAFDALRIAVGEAADDDETAVLAARKEGDGNAN
>SEQF2266_AEE65981.1 hypothetical protein BPTD_0519 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFSLQEQTAILAHLNVRTERHGDEPAGGADLKISFTTGNGILSEFHPRLRHGLYKAEEAPNQAEMAVGEALTERIYADLI
DRVRLKHDLKGAKVLIGFGLGGSSDIQMDPVDVDGFQAELHEGGSVTLTFRVKCHPTGEQVKKLHEVLGNEITISVTPAI
EKQGALGLNLEPEAA
>SEQF2266_AEE65982.1 exonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRYILSPHEQGSDGWLPDRCGRVTGSRAADMLAMTAKKEWSTKRADYKFELAIEVLTGMPQGSDYTSKEMQWGIDQEPF
ARMAYEEASGNVAIESGFMYLPDVAAGCSVDGLFVEDGRRGVLETKCPKSTTHIRYLEAGTLPDQYRPQCLHNVWVTGAE
FADFVSFDPRFPEELQLFVCRFIPTAKELADHEKAVLQFLAERDELVVQLKRLAA
>SEQF2266_AEE65983.1 DNA recombination protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNLAVITQDIYNARESFAAVLTDQSISFEKEAGFAIQVLQNNDYTLKVATGNRQSVINAVTNVAAIGISLNPAKRQAYL
VPRDGRICLDISYMGLIDPAVATGSIRWAQAELVRSADTFALNGFDAPPTHVFNPFSKERGEIIGAYVVVKTADGDYLTT
PMSRDEIDGIMNRSQSVKSGKSSPWKTDYGEMAKKTVVKRAYKYWPKNDRLSEAIHHLNTDGGEGLATTASAPVDPDLLP
RLRKAVDAARDAAALEKVWKDGLAEVRATRDMAIYNAFKSAVAARGAVLRGEAVPTEPPPDDGKTIDEPPRDPSDDGFGR
DDQGGIQE
>SEQF2266_AEE65984.1 putative membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRRLIAYLRATRLDLDLAGYAAMVAALAVATGLIGPTLDARSTLTACEGCGKTAVAAKE
>SEQF2266_AEE65985.1 hypothetical protein BPTD_0523 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPLTYPTECGTAAVVRPLTDAERLAELRRDLDADLHYALVAQRCVRWPYGDPELVAEALYAATIGDAQSEAAFSLLVRA
AARGESAVSVGTLFVEWTKLARARLLDTLVELTEDGQRVTFGSRQ
>SEQF2266_AEE65986.1 hypothetical protein BPTD_0525 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDTKATLKFEVTLADLRRDGACFEGYNKVVRAVQGREFSGDDSERESYIKFSHAEPVALTAILASNGLDDALWALRCVP
GVDRDARLFAVWCARQVEHLMTDQRSKDALDVAERFANGEATEEERAAARAAAWAAQKEMFIAMCEGRAPWQQTT
>SEQF2266_AEE65987.1 hypothetical protein BPTD_0526 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEAKLIERVALNDEFQAACQRYAHGNGSSMAIAGEALRAAGMPELLQAAVLVRDYLHRNGTRQGDVPLALIEAIRATGAA
>SEQF2266_AEE65988.1 hypothetical protein BPTD_0527 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPLLVAALSATALLVGCAAKQPQLTRSEYLKVTQRTYEGKSAEEVLNAAEKLFRLADGDDFKFFHDDDSMSASRSWIVY
VVLAAAMGTDTWTVRTKEIPGGVRVSAALNTSAGSVLPMPTTGGDMSAGTTPGMGGNVPGTAIYDVFWARMDYLLGLSDQ
WMTCEESNRRVSTGAVWGPNDALCNGFNVKDDLPAELVGKIEKPKPSSTFNDG
>SEQF2266_AEE65989.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE65990.1 hypothetical protein BPTD_0529 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPASTAPARYLAPDTLARPGGHYSHACVANGMVYVSGQLPIGPDGTKLADAPFEAQARQVLDNVAAALAAAGSGIDRLVQ
VRVYVDSVENWPAFDAIYAEWAGAARPARAVVPTGPLHYGFKVEVEAVALA
>SEQF2266_AEE65991.1 glutathione S-transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAYDLWYWDGIPGRGEFVRLALEAGKIPYRDRAREPGEDMLADMRRRRDTAPFAPPYLVADGMTIAQTANILLFLGVEHG
LAPPDRAGRLWVNQLQLTIADLTAEAHDVHHPVAAGLYYEDQQDVALRRAADFRETRMPKFMQYFEQALDRPGGWLTDMG
RWSYADLSLYHVVEGLLHAFPRRMRTLMHRYPRLMTLHARVAELPELRGYLASDRRLPFGDGIFRHYPELDGA
>SEQF2266_AEE65992.1 hypothetical protein BPTD_0531 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIPRNAKLAAGAGVLFVLILMLAFSSWFQVDQGERGVVLRNGKLVRVSEPGLDFKTPFIDSVSTVSVRDHTFIFENLEAY
SYDQQPATLRVSVTYRVPAEHVAELYAEYGTISNLQMRVLERKTPDAVKNVFGRYTAVRAIQERQKLGVDVNAAVLSAMD
GAPVQIVGVQVEEVGFSKAYEHSIEQRMLAQVQIETTRQQKETAMITAEIQVVKAKAEADARRQQFTAEADGIRLRGEAE
AASIRAKAEALVANTNLVSLNAVEKWDGVLPATQVPGAALPFIGIK
>SEQF2266_AEE65993.1 hypothetical protein BPTD_0532 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGYFVLKASGTQYMFNLHAGNHEIILTSERYTSKASAQDGIASVQKNAPDDARYQRLTAKDGSPYFSLTATNGQSIGRS
EMYKTTQARDNGIASVKSNAPGAPTKDQTQA
>SEQF2266_AEE65994.1 putative metal-activated pyridoxal enzyme [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTTHAHPLDTLDTPAAIVDVARMQHNIARMQDRMNGLGVSLRPHVKTSKCTPVALAQLAAGAHGVTVSTLKEAEQFFAA
GITDILYAVGMAEHRLPAALALRRRGCDLKIITDNAGSARAIADFGRAHDEVFEVWIEIDTDGHRSGIKPEEAALLAVGA
ALHEGGMRLGGVMTHAGSSYDLDTPEALAAMAEQERAGCVRAAERLRAAGLPCPVVSVGSTPTALSAAQLQGVTEVRAGV
YVFFDLVMHNIGVCRVDELALSVLATVIGHQADKGWVIVDAGWMAMSRDRGTQKQKQDFGYGQVCTADGAPLAGYTLIGA
NQEHGIMAGGPAGEDVTTRFPVGMRLRILPNHACATGAQFPQYHALEADGGLQAWERAHGW
>SEQF2266_AEE65995.1 haloacid dehalogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIATPTGYPRAVLFDLLTGLLDSWTAWNAAAGSEPAGRAWRAEYLRLAYGCGRYVPYEQLVREAARATGLPESAPAALE
AGWHELPVWDDARALLRALRPHCKLAVVTNCSRDLGRQAAGLLGVDWDAIVTAEEAGFYKPDPRPYRMALQALQVPADAA
AFVAGSGHDLFGTAAVGLRTCWHNRLGLARPQGAPEPELQSATLAVALPWLQAFRPAVR
>SEQF2266_AEE65996.1 putative integrase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGKFEGVRPASESSIEISFVYQGRTCVRRLRMKPTVANLKRAAEQRAAIVETIARGEFDPLVAPRRQ
>SEQF2266_AEE65997.1 hypothetical protein BPTD_0537 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAPFYLSEEDNMKTCIHALAAVSGDARDQRETDAEMRYGK
>SEQF2266_AEE65998.1 entericidin A anti-toxin precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNRIRAALLAAITLVALAGCNTMSGAGKDIERGGEKIQEKAQ
>SEQF2266_AEE65999.1 autotransporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGSGPSGMNERVTVNQGARIETNASAAISVGTSGQVRIEGGAVVQSTVNTAASGQYAKTLEAASNNNISIQVNAQLLAKG
SASQSSALGLSGAGNTVTNHGTIRADNAAAIWVTANTANAANTIDNYGTIETVLNGGYANAIGSTRNNSATGAGVTVRNH
ANGRIVGNVKFEAGDDSVILDGGSTITGSLNGGSGNNSLTLKAGDGTLGRAIRNFGTITKQEAGTWTLNGQVGRNDNNLK
STVKVEGGTLVLRGDNSGATQGGVLQVSAGATADVTAASAMQSISNAGTVQFTQDSNAAYAGVLSGTGSIVKRGGGDLTL
TGNNTHTGKVVVEAGSLSVSAANNLGGAGSSVQLKGGALALKKTIVVNRGLTLDSGAQTLIIEPGTTTTWQGQVSGAGKL
VTQGGTLVLEHASNTYSGGTEINNGTLRAAHDASLGSGTLALKNSQLAATDSFTATRALTLAGNESIDVAATKILSWNGE
ISGAGTLVKEGQGTLLLRGTNQQNGGTTVNAGTLQISRDANLGRGALALNDGTLQSTGSFATSRAATLRGQATMEVDASH
TVTWNGELSGGGMLRKSGQGTLVLAGANTYSGGTVVEAGALRAGHEDNLGRGAITLQGGDLLAGGSFSSNRDLTLVRGSL
DVARDATLTWSGAISGAGDLVKKGDGRLTLTGVNEYAGQTVLRGGKLRVARDENLGRGALVLEDNTVFESMGSHAATRQV
TLKGAPKVETLDGTTLEWRGTVDGDGKLYKQGGGTLVLSGNNTYAKGVEVWGGVVQVSRDQNLGAANGAVTLNGGGLAAN
GDFTSNRQLELTAGAKAIDVAAGKDVTWRGVVNGAGALTKAGDGTLALAGANTYTGGTRLQGGTVQVSRDNNLGQAAGAV
TFDGGRLANTGSFATARTATLNKAGQIDTDRGTTLTWNGAIGGKGELRKQGAGTLVLGGANTYQGDTRVEAGTLQVSADA
NLGQGAVHLHDSRLATTGTFATSRRLELTGRGAVQAAAAATLDWRGTVAGAGTLVKEGAGTLVLAGDNQHAGGTEVRAGT
LQVSRATNLGPGALALENAALATTASFTATQAATLTGNAAIDTAAGTTLGWEGAIGGTGSLHKKGEGKLVLVKDNHHDGG
TTIHAGTLQVSRDANLGSGQSAVTLDGGALAVSAGFSSGREIVVGAGHGALSVTGGHTLQWQGQVGGAGALTKTGDGTLV
LEHDNTHAGGTRITGGVLRVSRDENLGEAHGMLTLDGGTLSTTAGFASRRNATVGNGGGRIVVADAATLDLQGDVAGAGR
LVKEGAGTLALGGTNTYAGGTVVEAGTLRVARDANLGGGALTLNNSRLHATAGFATGRDATLSGRASIDTDDRATLQWRG
TVNGAGRLVKQGLGTLVLDGDNRYAGGTEVNAGTLQVARDANLGAGDVALNGSSLAATASFATARTATLSGAAAIDTADG
ATLDWNGLLDGDGALVKQGNGTLALAAANRYGGGTIVKAGAVRIARDANLGRAGTGVTLDGGALATTADLATGRAATLGA
ANGTLDVAAGTRLDWNGAIGGAGALTKTGAGTLALNHDNQHAGGTLVHGGTLRIARDANLGAAGTAVTLDGGTLATTASL
APERALRVGARNGVLLPDAGTTLDWRGVVAGAGKLTKAGPGTLVLSADNRHGGGTAVTGGTLQVSRDANLGAAAGALTLD
GGTLLSTASFASARVATLDAAGGTFVTRDGTRLDWDGAIGGAGGLVKEGAGELRLGNANTYQGPTRIAAGRLAVNGSIAS
PVTVEQAGVLGGTGRIVGDVANRGVVAPGNSIGALTVAGNYAGTGGSLEVEAVLGGDAAPADRLVLDGGAASGVTPVVVK
PQGGVGGLTLRGIPVVVAQGGATTAPGAFRLAQPLVAGAYEYQLLRGAGDGAAAQAQDWYLRTSRVERDKAGRIVKVVPF
YRPEVALYAGTPMLMRMVGTEALGSYRERAGQPGAAAPEAGAAARRGVWARTFGRRFERSAGSEAAPSFNGSLAGMQLGA
DLYTRRSATRHADAFGVFGGYATARGDVRGLARGEIQAVGTSTLRAAQLGAYWTHTGPSGWYVDTVLAGTRYKQQTSSSA
HVGATSRGWGMMASVEAGYPWQLNPRWQIEPQAQLVYQQLGIANGADRVSSVSYKTPDALTGRLGTRLAGQYAYGKAQLR
PFMGVSLLHDFTGADTVTFAGVHSVRASRQNTAVDLKAGVDTQLGKSVGLWGQVGYGKSVGSGDGSDRGWSANLGLRVAY
>SEQF2266_AEE66000.1 hypothetical protein BPTD_0540 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLYWRMPTTTPALRPQDLTETAFAPYGWMLGKPLPAGDDVLRFSNPATDFWQEHVFDTGAGAGRETEVLWVNYRISQPG
FDTLEKHLLTQQAIVPLTGAIVQIVARSAFDGSPDLASLAAFVVPPGQGICMRPGCWHATRISGGEVTCLMLTRRSTTLD
LVRHLHGEPARESEIVAIVPHGLDLPARPTAEGPAPHGR
>SEQF2266_AEE66001.1 hypothetical protein BPTD_0541 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYRIVSALAVSVTCLAGMGAAQADQGAAAYPDKPIKIVIPYSAGGGTDQFMRIVSERASRVLGQPITILNKPGGSTVIGV
NAVIGAAPDGYTLLVSTNTSYTLIPYVMSPPPYAPEKSLDYVATLGQTSMVLTANKTMPSDLKTVLDSARQSPGRYTYAT
YGVGSSTHLAGEVFMNDTGVEFRHIPYKGVEAVTALAGNQVDLMIDGINAAGTMLDAGKTQALVVLQRTRSQFLPDTPTL
VEAGYPEAAENVISYVMAAPKGTPAAVIDKLQNSFAEALRDPGVLAQAKAMRTEAAFKGPAQTQAFVDSQPALFKDIVEK
KNIKF
>SEQF2266_AEE66002.1 putative substrate-CoA ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPPGHTWWDIIEEHARRFPERDALAHGDGAITYGELAARVRRCAAGLSARGIGAGDCVALLAPPTPDAMVCLLAAARLG
ALWVGLNPRYQPREMAYVIGHAQPKLVLSVREFEARRYADDLDAALATLAPQARRPDLLFYDSRASCDEAMLHALCDAPD
APCPAPFEDAAQPCMLVYTSGTTGIPKGVLLSQTALIYRSTVQARTFATQSHPVVINFAPINHIGGMHFRGLSQILAGGT
IIYQERYRPAEVMGLIEKHRVNMLMLGSTMLQMLIREPSFDMSIMRGMEWFIFSGAAIPMPILQRVKEHCPRIGSTYGLT
ESCGSVSYIVASDSLEAAAYTVGRAIPEGQLRVADEQGQPLPAGTQGELQVRGQYCMNGYLRDAAATAGAFTRDGWLKTG
DMAQRDDDGNFRLVGRIKEMYKSGGYNVYPREIEVVLEQHPNVLMSAVIAVDDELYQQVGHAHLILRPDTEVSEPELVQW
CRERMANYKVPKRIFVRNSLPMLSIGKVDKIALRQQH
>SEQF2266_AEE66003.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNPLNRYHHILHAIAGRPGGLSLADLAAATGLPRSTTHRMATTLREIDYLDQDDASGNFVLGDGLIGLMRSSLAQDSKL
ALFDPALNFVVGRLEETAFCARLWNDKVDLVQAVTPTRKDQLYIYPGVGGRPLDKCSSSKAILAYLDPARIQALLEPLAS
STPGLRVDTLMQELDQVHRQGFAICDGEIDEGVLSVACPVMSGPARGLYSIGVVGPAARLKSHDLQEIVAVLHSAADLAA
AELLNS
>SEQF2266_AEE66004.1 enoyl-CoA hydratase/isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKEIISLEKTGAVATVTIDRGGKRNALSQEMVLRLTDIALELQQDTSVACIVLSGNQNEFSAGIDLGDAMRWSLDDKTQL
ERRAIALRGTRLCKAWEDLPQITIAAVEGMNVGGGIALTLACDWRAMGKSAFLFVPEVQIGIPLGWQTIPRLVNLVGPAR
AKQIVLLGEKMSADTALEWGVADFVVADGAACAHAQDLAARIGKMPELAVRMSKQSINAYANALNHLGSHMDVDQAMLCG
QTRDAVAVRDRYAR
>SEQF2266_AEE66005.1 carboxymuconolactone decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDWNQYRSELMTRIGEIAKASPETVKGYQQLSAAGKQTNQLDAKTRELIALAVAVTTRCDGCIAVHAKAATDNGATKGE
IAEALGVAVALNAGAALVYSARVMDAVDAAQ
>SEQF2266_AEE66006.1 arginase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIAASFPHGVSLIGAPTDIGAGQRGASMGPEALRVAGLVRLLERRGLQVTDRGNLQGAPNPWRPPANGYRHLNEVIGWNQ
LVHDAVSAELRQERLPILLGGDHSLAIGSISAVARYCRASGRKLRVLWLDAHADFNTNRLTPTGNVHGMPVACLCGNGPA
ALTSMAGRTPAIEPGWVRQIGIRSVDEGERNLVYDAGLEVYDMRYLDEVGMRAVMEAALAGLDPQTHLHVSFDVDFLDPE
LAPGVGTTVPGGPTYREAQLCMEMIADTGLMRSRDIVELNPALDVRNKTAQVAVDLVESLFGKSTLMRRRPGSA
>SEQF2266_AEE66007.1 ornithine--oxo-acid transaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNMPAPAATRRDRIEDELGAHNYQPLDVVLARGSGVWLYDTAGRRYLDCLSAYSAVNQGHCHPRILAAMVEQAQRLTLTS
RAFRHDQLAPLYEDLARLTGAHKVLPMNSGAEAVETALKAVRKWGYEARGVPAGQAEIIVCANNFHGRTLGIVGFSTDPD
ARGGYGPFAPGFTVVPFGDFAALQAAVTPRTVAFLVEPIQGEAGVILPPPGYFRQVRKLCSERDIVLILDEIQTGLGRTG
AFLAEAHEGIEADVTLIGKALSGGFYPVSAVLSNQAVLGIFQPGQHGSTFGGNPLACAVARAALRVLHDEGMIDNAREQG
AYFMQRLRALPGPVREVRGRGLMLALELEPDAGPARAYCERLMARGMLVKDTHGQTLRLSPPLIVTREQIDWACAQLAHV
LAHSAPGSSGGPS
>SEQF2266_AEE66008.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66009.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLVAPMPETAQRKVAGTATERAYGELRKRILEGSLAEGAPIRQDEVAADLGISKIPVREALVRLQSEGLVVFTPNAGAT
VAVLTAADYVEMLDLRLAIECRALELAVPNMAPSDLAQARRLLDAYSRHENASEWSELNAQFHDCLYAPANRPRLLAMIR
SVRDHMGKLMRLRVTEAAGHDRSHQEHLKILAACEEGNAARAVALLRKHIEHTQREVQAYFRKA
>SEQF2266_AEE66010.1 hypothetical protein BPTD_0551 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKGYARENRRRTLLAAALAGCLLAGGTAHADESGADKRPIRLIVGFSAGGYTDVIARILAEQLGHSLNRSVIVENRAGAN
GAIGATAVARSAKDGATVLLSPPGLITNTLISPELSYSIQDFAPVARVTSLPNMLVVSANSKYRSLAELLDGARKADGKL
TYGSGGVGSSNHLSMALLMRQANVQMLHVPYKGSSLAETDVMAGHVESMFSGAASAIPHVNGGRFHALAVSGDKRIGALP
DVPTVAEAGVPGYSHGTWLGLFVAAGTPAQAVAGLNQAVNKVMADARVQARMTDLGADASQANTVDEFTAFVQSDLAAQK
TLIGNASLSGN
>SEQF2266_AEE66011.1 hypothetical protein BPTD_0552 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDRPAHRATANPPLRRGGGGAGAMNPDRLLGEPLRLPDSLWAATAPAAPALPSLDGRHAADVLIIGAGFTGLSAAIRLCR
EGRRVIVLDAAEPGWGASGRNNGQVIAGLKQDPEVIETLYPGEAGRRLVRFGSEAPGVVFRLIDEFGIDCAAGNKGWIQP
AFTRSGLRAVERRCQAWGERGVATRLLQADELARLLGTPRYRLGWLDPRGGHVQPLAYARGLARVALSLGATICGGARVE
ALRREAGQWLARCQAGEARAPSVIVATGGYADRLVPGLRTSIVPVRTAQVATRVLPEAMRREILPQGHVSSDTRQLLTSF
RLSPDGRLVMGGAGATAGLEHARIVPFLHRAGAELFAHLGKLDWEYHWSGYFAVTTDHLPHVHEPAAGMHVSLGCNGRGI
AISTALDIELAERVLGAPAESLSVPVSDL
>SEQF2266_AEE66012.1 4-oxalocrotonate tautomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTVRVELSPGRSAEQKTRYMQEVTRLTVEILKCPVESVDVIFIEIPPTEWAHGGKFYAQPPA
>SEQF2266_AEE66013.1 hypothetical protein BPTD_0554 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSPKVGFVSLGCPKALVDSERILTQLRTEGYEVTPEYNDADVVVVNTCGFIDSAKAESLEAIGEAIAENGKVIVTGCMG
VEESVIRQVHPSVLAVTGPQQYEEVVRAVHGVAPPRQDHNPYLDLVPPQGVKLTPRHYAYLKISEGCNHRCSFCIIPSMR
GDLVSRPVGDVLSEAERLVRAGVKELLVISQDTSAYGVDIKYRSGFWNGRPVKTRMTELCAALSELGVWTRLHYVYPYPH
VDEVIGLMADGKVLPYLDIPFQHASPRILRAMKRPAFEDKTLARIKRWREECPDLTLRSTFIVGFPGETEEDFQYLLDWM
SEAQLDRVGCFQYSPVEGAPANTLDNPVPDEVKQERWERFMEHQQAISTARLSTRVGREIDVLIDSVDEEGAVGRSSADA
PEIDGCVYVDSEQPLKAGDMVRVRVTDSDEYDLWGERIA
>SEQF2266_AEE66014.1 bacterioferritin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSILGVSDMEQSATQPHRAFAVDVKAIRAKVRRDIESGAVTEGYRADRATVLRLLNEALATEVVCWLRYKRHAFMARGL
SAEPVAAEFAEHAAEEQGHADRLAERIVQLGGEPDLSPVGLLERSHAEYVEGKDLKDMIKENLIAERIAIDSYRQMVDYV
GEADPTTRRLLEDILAMEEEHADDLSDLL
>SEQF2266_AEE66015.1 putative lysine decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIQNICVYCGSNSGRQPEYIEHAQGFARELVKRGLGLVYGGASVGIMGAVADTVMAEGGRVIGIIPEALMKKELAHRGL
TELHVVQSMHERKTLMAQKADGFVALPGGAGTLEEIFEIWTWAQLGMHQKPCGLLNIAGYYDLLGQFLNHTVDEAFMRPQ
HRAMLAIDHDPAALLDHFASYVAPTVSKWIAPGEH
>SEQF2266_AEE66016.1 hypothetical protein BPTD_0557 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHAMPTQPAAPRTTACLLRDYFRAKDENRPLYMARAFAPDAVLKMALRTQAIAFPPESHGLAAIADTLSRKFGQTYDNV
YTFYLAHPGEHAVLPEFSCDWIVGMTDKASGEVRVGCGSYDWVFQAEPHLVKRLTITIESMLTLPADTAGPVFGWLTALP
YPWTDAQRVVASAPPIESLAPIMYWLRRDVRRADPTGGMA
>SEQF2266_AEE66017.1 haloacid dehalogenase-like hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKYRLAAFDFDGTLADTLPWFESVMDGVADKYGFRKASAADKAQLRHRSTREIMAFLEVPVWKLPAIMAHVRQLMREIDP
AVRMFAGVPAALAQLKAAGLRLAVCSSNSLDNVRRVLGPQTGALIDDYECGADLFGKPAKLARLMARHGVERTRCILIGD
EMRDIDAARKAGVMAGSVAWGYNHVDALRARAPDEIFEQVADLAAVLAPGFPSFPPTP
>SEQF2266_AEE66018.1 hypothetical protein BPTD_0559 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSDPTHRITDLDTLQARYGTPAPNSLTKEVDYLHPHYRAFVEAAPFVVLATSGPQGLDASPRGDGPGFVVIEDDRTLLL
PDRRGNNRIDSLRNIVADPRVALLFLVPGVGETLRVNGQAEISVEPALLARFAVDGKPPRSVLRVRLETVFFQCSRAIVR
SALWNPDARVDRASLPSAGQILGALSAGMLDGERYDRELPERVRATVY
>SEQF2266_AEE66019.1 methionyl-tRNA formyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLVFAGTPEFARIALDALLAAGHDVPLVLTQPDRPAGRGLKLTPSPVKQAALAAGIEVAQPRSLRLDGRYPDEAAAARA
QLERVAPDVMVVAAYGLILPQWTLDLPRLGCLNIHASLLPRWRGAAPIQRAIEAGDAETGVTIMQMDAGLDTGDMLLERA
VPIGAQQTAAQLHDELARVGGQAIVDALAALAQGGLAPRRQPDAGVTYAAKLYKAEAALDCSLPAAVLARRVRAFNPVPG
ATIRLPGLDDPVKVWRAQALEQAAGGTSGAVLRADAQGIDIATGQGVLRLLELQKAGGKRQPVDVFVRGWQP
>SEQF2266_AEE66020.1 peptide deformylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALLSILRYPDPRLHKTAKPVAVVDDRIRQLVRDMADTMYDAPGVGLAATQVDVHERVVVIDVSEEGNDLRVLINPEITW
KSDERQTYEEGCLSVPGIYDEVERAARIRCKALDQQGQPYEFEADGLLAVCVQHEIDHLDGKVFVEYLSNLKQNRIKTKL
KKAEREAERA
>SEQF2266_AEE66021.1 hypothetical protein BPTD_0562 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTRQACLEADRRDPLAAFKDEFELPAGLIYLDGNSLGALPRGAAARAAQVIGQEWGQGLIRSWNTAGWFELPARLGNKL
AGLIGAGQDEVVMTDSTSLNIFKALAAALRLAQRAAPQRKVIVSERDNFPTDLYMIQGMIDLLRQGYELRLVDAGLSLEQ
ALDDDVAVVLLSHVNYRTGAMHDMAAVSRRAHARGALIIWDLAHAAGAVPVALDADGADFAVGCTYKYLNGGPGSPAFIW
VAPRHRDDFWQPLSGWWGHRQPFEMADTYVPAQGIRRYLCGTQPIVSLATAECGLDIALRADIAQVRAKSLALGDRFIAL
VESRCADHPLTLATPREHARRGSHVSFLHPQGYAVMQALIARGVIGDYREPELLRFGLTPLYLSHADIWDAVEILREVLD
TRAWDRPQYRERAAVT
>SEQF2266_AEE66022.1 leucine-responsive regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHEYANQFEQHERKLPMQLDAIDRRILDILQTEGRLSNQDLADRVALSPSACLRRVRALEDGGVIQGYRAVLDPRCLGLD
FEAIVHVSLDQSQAGWHEAFVARLAGLEEVRQASIVTGSSNYVLQVRTRDLAAFSAFVVDKLNGIAGVREIHSHIVMRKV
KDCGGVLPVGPAGLAGP
>SEQF2266_AEE66023.1 hypothetical protein BPTD_0564 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLTHTRAELSAWLRLSQEPGVGPAAAYALLAALGMPEQIYAQGSATLARHVPQDVARQLRAPLSDEAAALIEQTLQWAE
QPGHHILTLADPAYPQQLLTIADPPILLYVNGDPACLRRPAMAVVGARNATPGGQDNARAFARHLAGQGWCIVSGLALGI
DAAAHEGALLAGEQGAGTVAVMGTGIDRIYPAAHRDLAHRIVQHGALVSELPLGTGAQRHHFPRRNRLVAGLARGVLVVE
AARQSGSLITARLAGESGREVFAIPGSIHSPLSRGCHALIRQGAKLVETVQDIADELGGAGPAASARTAPPARPAPPHPL
LDALGFDPLHLDALQARTGMDAASLNAQLLELELDGRVARVEGGRFQRLR
>SEQF2266_AEE66024.1 hydroxymethylglutaryl-CoA lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQPSRVKIVEVSPRDGLQNEKEFIATDIKVELVDRLSAAGFQNVEAASFVSPKWVPQMADGAEVMARIARRPGTIYSVL
TPNMKGLEGALAARADEIVIFGAASEAFSQKNINCSIAESIARFEPVAAAARQAGVRVRGSISCALGCPYQGEVPVEAVV
DVARRFLALGCDEIDVADTIGVGTPRRVREVMDAVTRVVDPARVSGHFHDTYGQALANILAALETGIAIFHASASGLGGC
PYAKGATGNVATEDVLYMLRGLDIETGIDFDAVVDIGQWISGHLQRKGSSRAGNAVAAKRAA
>SEQF2266_AEE66025.1 hypothetical protein BPTD_0566 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNLFAAPTPEEHAALLQEIGPLPLSGQAWPDWVRILAWIVLAVIGVQIVTTAIGLPPGQVNPILAGTIILCFLGLALVS
WHMQISVTRIDESGLRQTWITRREVAWQDIQFAKFVPLLFSKRLVVFTRHGRPIVFQGGTRDLQVAFAKISLLYRRKR
>SEQF2266_AEE66026.1 amino acid-binding periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIAQGLAAAALLAGMVAGAQGATLDVVKKRGTVVCGTTTGFAGFSAPDKQGTWRGLDVDLCRAVAAAVFGDASKIKVVP
LNSQQRFTALQSGEVDVLTRNTTVTQQRDTALGIIHAGINFYDGQGFMVPKSLGVKSAKELNGATICLQTGTSNENTLAD
WARANQVSYKPVVIETFNEVVNAFASGRCDVFSTDASGLASIRISRLEKPDDYVVLPEIISKEPLGPFVRQGDDAWLNIV
RWSLSAMIEAEEYGVTTANVDEQLKSENPNVRRILGVTPGAGANLGLDEKWAYNIIKQVGNYGESFERNVGQGSPLKIQR
GLNAQWTQGGLMYALPIR
>SEQF2266_AEE66027.1 aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLAAPDYAFAAPFQHPPASPIRSLMPYAMRPGTISLAGGYPAQELFDVEGLAAASRQVLERLGACLQYSNIDGQASLRH
ELARLSAARGLHCDADTELAVTGGSQQALALLARVMLQPGDAAVIETPAFPNSVQALRYTGAAVHTVPSGPSGIDLDALD
ALAARVRPKMVCVVASFSNPCGATISRERRLRLLELAVRHRFLIVEDDPYGELRFAGETVPPIAALAEGQARHWAVYISS
MSKTMAPALRIGWVVAPAEVRRRVVGAKAADDMACSAWTQEMVAQYLADGRYAQHVPRIRAAYGARCDAMAAALQRELGD
RVVFRKPEGGMFFWARLNGAIDATRLLPYAIEHEVVYVPGKAFYADPAQADPHALRMSFATMNETQIAQGIVRLGRALQA
CEANAPVSISLAA
>SEQF2266_AEE66028.1 hypothetical protein BPTD_0570 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHKHAKRLLTLAALTFAAGAAAQSWPSQPLRWIVPYPAGGGTDVVARTVAGSLEKPLGQTIVVENRPGAATIIGATAIAQ
ADPAGYVVGTADSGTLAFNPSLYAKLSYDPAKFTYIGGIARFPLMLAVNVNSPYKSVEDVLQAARKEPAKLTAASAGAGS
PHHLALELFKQRANVDVLHVPYKGAAPAIQDLLGGQVDMMFIDLAAGLPNIKAGKLRVLGTATPERLAVLPDAPTMAEQG
VADFTAYAWQGLVGPAGMPEAAVKKLGGELEQSLKSPAVSQKLLDMGVMPMPMTPQDFKAYAEKERAAWADVVKKANIRL
E
>SEQF2266_AEE66029.1 hypothetical protein BPTD_0571 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIRKWGVGAVLGLSVATTAWAADFKVGQVEVDDLWVRASAPGQANGAGYMEIENDAKAADRLVSVSSPAAERVELHNVV
TENGVAQMRQVDGVAVPADGKARLAPGGYHVMFLKLKAPFAEGGEVPATLKFEQAGEVAVKFKVKPLGHNPGMAGHDHGH
MKH
>SEQF2266_AEE66030.1 chromosome replication initiation inhibitor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLDHGNLRALAAVVREGSFERAAAALSVTPSAVSQRVKALEDRMGRLLVQRTVPARATDDGQVLVQLAEQAALLEHDAL
NRLGVAEDEVPHASIPVAVNHDSLETWFVDAAVRFAARSRATLDLQSEDQDHTAALLRKGAVLGAVTTLADPVQGCRIHA
LGSMRYVACCTPAFHQRYFAQGVSARTLASAPVLVFNRKDALQARYAHRIIGRAAWEPPVWWLPSSRAFVQATLGGLGWT
MNPLPLVQAELDAGQLVPLRARAWEDVPLYWQHWRVNSQAMEALTDAVLAAARALVRRR
>SEQF2266_AEE66031.1 transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFTLSVPAYVTAWASGAATGLGLFAVVGAQSAFILRQGLMRAHLLSILAVCALIDAVFIFGSVWGLQTLTGWFPWLIQAI
LWFGVAFLAWYALQSARRALRSDGGLEVARQAIPSRGAALLGAIGFSLLNPHFWLDMMVVGSLAHGFADARLAFAAGALT
ASVVWLAVLGVGSRLFAPLFSSPRAWRVLDGLIAAVMALLAARLALGGLAG
>SEQF2266_AEE66032.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66033.1 putative dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTARVGRVDHPVVAVHDLDRTSQQYRKLGFVVPPSGKHQEWGTENLCIMFPGDYLEIRGIGDPNKFLAGVDKFLAKGEGL
YSVAFNAASAQESYQAGLAAGLEIEPPRHLNRKLVLEDRTLDLHFETVMLGHDLYPGLTHANLCQHLTADTLRQPGWTDH
PNGVVAFGRLVGMVSDFDAAAAAYTRLIGAENVTRGDDHILLDFGAGADIELIGPAEAQRRGDAQPQLGDAYLASATLLV
KDAAATAALFEANGVRFTRQPGGELKVDPADACGAHLYFKQA
>SEQF2266_AEE66034.1 L-aspartate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTPLRVGIVGCGVLANAMAGHLARQPRPVEIVGCLVRDPGRARGALPCHGSWEALLAQRPDVVVECAGQAALAQYAQAI
LAAGVDLVPASVGALADDALRGALLEAAAAAGARIRIPSGAMVGIDGLAAARHVGVAEVLYRGTMPPVALQRYVSGPLPE
RGLAFAGSAREAVARFPKNVNLTGTIALAGIGFDRTRVEMLIDPDATANVHELLARGEFGDFHARVSGLRISESSPSSRI
VAGSLAQAALGSGFLALS
>SEQF2266_AEE66035.1 putative amino acid efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLATLALFVLASGLIIVTPGPTVLLALSNGSRHGVRRACWGMAGAVLADLVLVAAVAGGLGMLLAASEPAFQALKWIGA
GYLAYLGWRLLRSDAALVLPAPAAGGGDSGAGALFSRSFLVALTNPKALLFMSAFLPQFIDPAAALAPQYGALALVLAVL
NLAAMLGYAALGARLVRALRTGGLRWINRLCGGMLVVLAGTVALYRRAG
>SEQF2266_AEE66036.1 hypothetical protein BPTD_0578 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSSVDSSVLAPPLSAVLLGAAAAVQAVRKGRSLTDALAETPPALRPAVQAISFHAMRQLGWADAVAETLVRRSPGPLFD
ALLRVALSLLRPAPGAAAQPGAPQYAPHTVVDQAVTAAAGQRKLAAYKGLLNASLRRFLREREALQDSVAERPAARWNHP
RWWVELLERAYPDQWRGILAGANVPAPLTLRVNRRRATVEQARQALAQAGVAAAPVGDAGLVLAEPRPVPQLPGYGAGWW
SVQDAGAQLAAPLLAPADGMRVLDACAAPGGKTAHLLELADIDLLALDADVQRLERVDQNLERLGLRTPRVRLAAADASD
LDAWWDGRPFDAVLADVPCTASGIVRRHPDIRWLRRAKDVPRTAALQARIADALWRTVAPGGRLLYVTCSVFPAEGREQA
EAFARRHADAAPLDAPGQLLPVAIDATPQAQHDGFFYALFAKRT
>SEQF2266_AEE66037.1 hypothetical protein BPTD_0579 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLRICRMSMILRLFVALLLVFCSFSPITSGLAHAADPHVQRIEPLVRDGKLELSADVHFELNDQLRDAAQRGVPLYFTA
DLQITRSRWWWFDHTLVDKSITWRIAYNALTRQWRAGAGELSLPVASLDDAMDLVRHIRNWQVADASEFDPGVRYGGQLR
VRLDTSQLARPFQVNALNSSSWSPATPWAEFSFALAEPARDPS
>SEQF2266_AEE66038.1 putative two-component sensor kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMFLRLALVVGGVSGLALLGLLAWSTGNASRFARYYDTLLILNGIFAFALFVWVVALTVRLARQIRRRQFGARLTARFA
LAFALIGVVPGALIYTLSVQFMSRSIESWFNVRVDSALESGLNLGRAALDSQLADMDVRARAMAAELNNMSDNDIPLALT
RLREANGAQEATVFTGSGRILAFSTNTYGQLLPPSLPATLLNQLRLARGYSAAEADDPAIPGAEGGLHLRVVIPLSAPAR
FDGILGGSAEPRWLQLMHAVPDQIAHNANRVQQGFRDYQELALSRLGLRKLYGITLTLALLLAVFAAIAVALSLSKRLVR
PLLRLAGGTQAVGVGDFRPLPEPPERDEVGQLTRSFNAMTRQLEEARQMVESNRRQLERSNVYLESVLSNLSSGVIAFDE
GFRVTTVNQGAQTILQADLRSVIGRPLETVDGMLEFAQVVRQAFAAHAAVGSERLHWQQQFEITPGLDETGGQPVTLLAR
GTHLRVDGRGNGYLVVFDDITEVISANRTVAWGEVARRLAHEIKNPLTPIQLSAERLAMKLADRLQPADAQMLIRSTNTI
VNQVGSLKQMVDDFREYARTPPAVMQRIDLNALVADVLSLYGWDPGDGGGRGAARVLNLDVELAPGLPDIEGDPTQLRQV
IHNLLSNARDAVAEQGGEGRVKVTTQIVQSEQPDGGQQRAVRFTVADTGPGFPPQVMQRAFEPYVTTKAHGTGLGLAIVR
KIIEEHGGRIDLANRKEGGARISILLTRLALPSDTMDATAQKKDNAATQ
>SEQF2266_AEE66039.1 putative two-component response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARILVVDDEVGIRELLSEILYDEGHTVELAENAAQARAARLRMRPDLVLLDIWMPDTDGVSLLKEWASQGLLDMPVIMM
SGHATIDTAVEATRIGAMDFLEKPITLQRLLKTIEAGLARVRAPRAAPPLAHAAAAPVAVALEDELDPPQPFQAPVEAPA
ASNGQLGSISLDQPLREARDEFERIYFEYHLVRENHSMTRVSERTGLERTHLYRKLKQLGIESARKRGT
>SEQF2266_AEE66040.1 potassium transporter peripheral membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKILIMGAGRVGTSVAENLVSEQNDITVIDTDVGQLRYLQDRFDLRVVQGDGIQVSVLESAGADDTDLFIACAASDAANL
VACKIAREVFNVPRRIARIRMPEFADHPELMSDEGFAIDALISPERSVTTYLHSLIEFPEALQVVEFAGGRVSVITVRVG
HGSPMAHHPVDELREVWPDVTARIVDVLRDGRPLHAGTGTVVAPGDEVVLAVDTRHARRAVRQLREAEKTVHRVMIAGGG
NIGLRLARQLAEEGYSVRIIEHDAKRCEYLAAELPDNVLVLHGNGTDEALLERENIEDMDTWLALTSDDEDNIMSSLLAK
RLGARKVIALINRQAYGELMQGSHIDVAVSPSQATMSELLRHVRRGDVVAVHRLRQGVAEALEAVAHGDRSNSRVVGRAV
GKIGLPKGASIGVLVRGDEIIVPDADTEIQSDDHVIVFVPSRRQMPRVEKLFQVSASFF
>SEQF2266_AEE66041.1 Trk system potassium uptake protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRLLATFYVLGLTMVVFALTMVIPLAVAYIGQDAGFTAFLEGFLLALGIGAGTWLATRRGRSELHARDGFLLVSTVWAA
LPALAAIPLLLYYDDVGIPLSFTDAYFEAMSGLTTTGATVLSGLDALPASINLWRATLIWIGGMGILVLAVAILPLLGVG
GHQVVRAETPGPMKDERLTPRIASTAKALYAVYFGFSMVCLLAYRAVGLSWFDAWCHMATTMGLGGFSTYDDGFAHFDSL
SVELVAIVFMTISGINFATHFNALRQRNWRAYVVCPQTIPYLTVMLGAGLVISVFLYIKGVYGDPWEALRYGMFNTISVA
TTTGYANVDYASWPLFAPLTMLLLSAFVTSAGSTGGGIKMIRIILLVKQARNELVTMLHPHAVSPVRIGSRVVDQRVMAS
VLAFMLVYGLSVGVLSSLLLLSGLDLITAFSAVMAMINNTGPGLGPVGPMGNFSVLNDFQTWVCTFAMLIGRLELLTVLV
LFTPLFWRK
>SEQF2266_AEE66042.1 MarR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFDPAKQVLWSRPGYLVRRLNQIHYALFYEECKTQNVTPVQYGVLTALSLSPWLDQTAIGMELGLDRTTTADVIKRLQER
GLVERRVNPNDKRSRQAVITQEGLRIMGLLQGGMARAQQRLLEPLSPCNREIFMKLLSTLVDANNQYSRTALKAM
>SEQF2266_AEE66043.1 hypothetical protein BPTD_0585 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNALDLDVLQHARDWLASGRRVHLVTVVQTWGSAPRQAGAMLAVRDDGQVVGSVSGGCIEDDLIARARAGTLPERAERLT
YGVTRDEATRFGLPCGGTLRLVAEPLAPRDAWLDEVLQAIAEHRLVRRTIDLHTGAAALEAAAPAEGPDFDGRMFRAVYG
PHWRLLIIGANQTAQVLADIAATLDFQVIVCDPREEFHAAWHAPHATLVATMPDDIVLEIGTDERTAIVALTHDPKLDDM
VLLEALKSRAFYVGALGSRANQEKRRERLRLFDLGDEDIARLRGPVGLPIASRTPAEIAVAVAAELVWVRNTLGDREPSG
APLPAALAPAR
>SEQF2266_AEE66044.1 hypothetical protein BPTD_0586 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGILLAGGQGRRFAAASGGQDKLLARLADGTAVAVRAAAALREATDAVVAMVRPESAALAALLRGQGCHVLESEQASEGM
GASLAAAARFLLAGPVPNMPQRADVCLVALADMPWVRRDTLSAVRAAACADGITVPVHQGRRGHPVAFGRSLWGELAALR
GDVGARELLRRHRVAAVAVDDPGVAADVDTPGDLAGDRA
>SEQF2266_AEE66045.1 hypothetical protein BPTD_0587 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKVRKIAFEEHFTAVGFGDYSKAFVQHLDPGFAAELGARLTDFGAGRLAEMDAAGIDYAILSQTGPGVQGEPDAAVALR
RARENNDFLAERIARHPDRFGGFATLPMHDPKTAAAELTRAVRELGFKGSLVNGHTNGVYYDDPAYDAFWEQMQELDVPL
YLHPFDAYVLPHAYKGHPELAGATWGWGVETGTHALRLLFGGVFDRFPKLKIILGHMGEGLPFQRWRFDSRFAAYPYGVK
LQRAPSEYIGSNILITTSGVCSHPTLVGAIAEMGAEAVMFSIDYPYESTALAVEFIESAPLDAATRDLVCYGNAARLFKL
>SEQF2266_AEE66046.1 maleate cis-trans isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMRMKKVVKEELAAMDAESDRCAVELSDARVDVLGYAC
LVAIMAMGRGYHRQSQARLTAHTAANGGEAPVITSAGALVDALKVMGARKIAVVAPYMKPLTELVVDYIGNEGYEVVDYR
ALEIADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAAVATTYAMLKALGLEAVVP
GAGALLSGAY
>SEQF2266_AEE66047.1 hypothetical protein BPTD_0590 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVSDYEMIRAWTQVLRLSRLQAGQTVTVLTSAATHPQTLGTALVAAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTP
LTGNKAAIAMLKASDLVLDLMTLLFSPEQHEILQGGTRILLAVEPPEVLARLVPTEGDRQRVKAAAARIAGAREMTVESE
AGTRLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSYVSEPIVLTVENGYATRIE
GGLDAEMLREYVATFKDPQAYAISHIGWGLQPRASWTTLGLYDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHID
IPLRRCTVRLDGREVVREGKVLD
>SEQF2266_AEE66048.1 putative isochorismatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNIAAAIETTRTVLAAARERGWAVAHSRIVYADDDADG
NIFSIKVPGMLTLKEHAPASAIVPQLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMS
AGFRPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK
>SEQF2266_AEE66049.1 ring hydroxylating beta subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQTFFPPRTIDPARAIALKLEVEEFNADYCAALDGGQVESWPDFFTETALYRVTARENAELNLPVGLVYAEGRDMMHDR
AVAISRTQMFAPRYMLHMVSNTRVTSETPDGEIAASSTFLLMQTLVEGPTTLHLAGSYHDRFVRENGTLKLQERQVIYDT
AILANDLVYPV
>SEQF2266_AEE66050.1 ring hydroxylating alpha subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYQSQTVIGRTLAAKDAPLSECAWPQYALHFIPDWVYTNNAVYEQELEKIFRGKTWNFVALEAELPNAGDYKRSYVGAKP
VVVSRAEDGSINVFENRCAHRGAEFCRHNQGNAKEFVCPYHQWSYDLKGNLQGIPFKRGVNREGGMPKDFKNDEHGLRRL
HVTTRNGVVFASYSSEVEPIAEYLTPEILADFDAVFPGKKLKILGYYRNELPCNWKMYHENLKDPYHATLLHSFLVVFGL
LVAGNKSAMLVDSVHGRHGTMASAKSEDKYATVSEENKKEMRSFHDGLRLRDDRFLEFIKEFDSPWSVTMQTIWPNLIVQ
REMNTLGVRHIIPNGPDSMIMQWTMFGYEDDTEEMQRHRLRQGNLMGPAGFLGLEDNEAMKFVQEGVRRASTDVNVIKLE
SGKQGTSNTLISEAAIRSMYSYYREVMGF
>SEQF2266_AEE66051.1 putative ferredoxin reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDEIQSIVIVGAGQAGAVAAASLRQLGYRGGLTLVGQEAHPPYERPPLSKAVLQGTATHAEAAVHPAGFYAENDIALLTE
TAVAALDPAARTVRLADGRTLPYDRCLLATGGHARELPALPRGRAGVHYIRTLDDALDLRAALRPGVRAAVIGGGFLGLE
VASTARELGAKVTVIENGSRLLERALPAIVSDWLAERVRASGVDLRLGGAIAAIGDGPPYAITLADGTQVNADLIVVSIG
LAPEVTLARQAGLPLDDNGGICVDSQARTADPQVYAAGDCASQPRACLGTAARFESWQNANEQARAAAAAMLGLAPAAEP
YPWFWTDQYGCNIQILGLPQPGLRYVCRPQTDPQAAPRVLWIGLRDGVPCHGIAVNAGGDLRQLRVLFERGIPVDPHRLA
DPAEALKPLVKAWQAAIAVA
>SEQF2266_AEE66052.1 ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNWIKIATTDQLEDDEVMPVTAGEAKLALYRSEGEYFASDNVCTHAYALLSDGYLEDGCIECPLHQARFDIKTGKAMCAP
ATADIRIYPLKIENDDIYVDLQA
>SEQF2266_AEE66053.1 hypothetical protein BPTD_0596 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRRRFLAQAAGAAGAGLAAVGMPAMAQANPTVRWRMSTSWPKSLDTIYGSADELCKRVGQLTDGKFEIRAFPGGELVPS
AQNMDAVSNGTVECNHVLSTMYIGKNTALTFDTGLSFGLNARQHNAWIHYGGGLQQLRELYKKYNIVNHVCGNVGVQMDG
WYRKEIKSTADLNGLNMRIGGIGGMVLSKLGVVPQQIPLGDIYPALEKGTIDAAEWIGPYDDEKLGFNKVAPYYYSPGWF
EGSASITSMVNDKAWEALPPAYQAAFEAACGEQSMRMLANYDARNPLALRKLIAGGAKVSFFPKEVMDAVYKASQQLWTE
LSEKNPDFKAIYPGWKKFQEDEAGWFRVAENALDNYTFAAVARAQAK
>SEQF2266_AEE66054.1 oxidoreductase, large chain [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTEHTGAEVGAGSRQGVGARVPRKEDARHLHGKGNFVADMAMPGLCEVAFLRSPLAHARITDVRVPESVRDKVVLRSMM
GDARDIAADSTLPTYQPSVQPPLASGKVRFVGEPVAMTFAPTRAEAEDHAELVEVDYDDLPVYADVAGAQQATSDLVHEH
WRDNVFVTLNADRDFDEHAARAEVVVRRKIDLARQCMVPMEGKAVLAYWDHQADQLVVISATQVPHMIRSVLAQCLDLEQ
GRVRVVSPDVGGAFGYKCVLQQEELCVAWLAKTYKRPFRFIEDRREHLTAGANSREHHYEMTAYADKRGKLLALDARITI
DGGAYSVWPFTIGLEPDQAVGNLPGPYGFRGYRCETRCVATNKPGFVPYRGRTGVCFAIELTMDAVAREVGREPWEVRLE
NLVQPEQMPYVNVTNKHFDSGDYPASLRKALEMIDIDGVRTRQARGEADGRRIGVGVATYTEQAAHGTSVFAAWGTPVIP
GFDQATVRVTPDGGLEVRVGVHSHGQGMETTFAQIAHEILGIDVARIKVLHGDTGQTPFSTGTYASRSLVMSGGAVSQAC
KRLLPRMRHIAAHMLGVADDAVTLQDGIYRAGEKSVATGDVADAWYLRPQLLPPDVDPAGLEVNVGYKPKVDTGCFTYAS
HAAVVAVDPDTGAVEILDYVVVEDCGTMINPMVVEGQTIGGIAQGIGTAFYEETPYDANGQPLASTLADYMLPGPTEVPN
MRLHHFETPSPHTEFGAKGMGEGGAIAPPAVLFNAVNDALRGLGAAELSRTPLTPIRVLQAIAQGAGEAA
>SEQF2266_AEE66055.1 oxidoreductase, medium chain [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAAQFEYFRAESMQQALQWLRQHDGRAKLMAGGQSLGPMLNLRLARPPVVIDISGVPALREVGERGGRVRVGAAVTHAE
IEDGVHAALRGSALQQVATGIAYRAIRNRGTIGGSLAHADPAADWVLTMVALGADIEIAGVDGERMVPAESFMQGAYTTV
VGEGELIAAVHVPAMTDGARWGYYKFCRKAGEFAEASCAAWFEPARWVARIAVGALDGAPCLLPGLADAVARQGAAALQA
ERIDEAVAQAMPGKDALHRKLHATAVARCLKQALGVQE
>SEQF2266_AEE66056.1 putative iron-sulfur binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMVQVTLEVNGRQVAHEASPRMHLGDFLRDQARLTGTHLGCEHGVCGACTVLVDGQPVRSCITYAVACEGRQVTTIEGY
DGDPVMARLRAAFTKYHALQCGYCTPGMLTTSRDIVLRMPDADEARVRVELSGNLCRCTGYMGIVGAVMSVLRDLRKQPD
AAVQALRAAAADGRLPAPRGEQPIAFQPFTPSAPTAAQAEPRPAAAASPVGGKGNQIVDAFTVPFPAAEVWAFMVDLPAV
AACLPGAVIEETDSQRVKGKIAIKFGPMAAAFNGAARLERDEAAMRAVFRGAGQDSLSQSRATGDIAYQVEAVSENETRV
KVDLQYALQGPLAQFSRSGLVQDFVRRMIADFGKNVTARLRQPGGEALPQAQFNPVAMFFSVLWMRIKRWFGHGG
>SEQF2266_AEE66057.1 hypothetical protein BPTD_0600 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEMQKAIGKWWRRAMGGIALLAAAGTAGAQAPEPLRVRLDWTPWGVQAAFHLAQQKGWYKQAGLDVTLEDSNGSVTTVQI
VGGSDRFDLGHAALASMMIARDKGLPVKAVAVFARHSDIGLLVPADSGIAGPEQLKGRKVAYTAGSLEAPFIDAFLARGK
LKKSDLELINVDAASKASTYAVGRADAAFSTIPFFLPVVSQNRPSRAVRFADFGLDMPSFGLFASEDKLRERGEAIGRFA
SVSARAWEYIYAGHEDEAVSAILAQRPQARLDRTVLRGQIDALRGYFGLAAGQRVGAPVPADWEQAVKTLSSVGLVRADA
KAADFYVPDLARPQRYDALVKP
>SEQF2266_AEE66058.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVAAVSAAGVRKKYPGERGVQALETISIDVPAGRFVSILGPSGCGKSTFLRCVAGLETISEGELRVAGQPVKGPPDGIG
MVFQRDALLEWRNIRRNILLPVEFAGKPVARYRDKVDALLRLTGLAAFADNYPRELSGGMRQRAAICRALVDDPALLLMD
EPFGALDALTRDQMNVELQRIWMETRNTVMFVTHGIAEAVFLGDEVMVFSPRPGRVLETIRIDLPRPRPLAVRETAEFGR
YVRHIRGLFEQMGLIDEGGRAP
>SEQF2266_AEE66059.1 ABC transporter, permease component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTATGRKCLHAAAGAVSLAVFLLLWEGLGRALEVRPIMLPLPSQIALELAAEWRWYADQAWYTLMTTVAGFAVAVVGGVL
IAVMLVSSRWCESFLYPLIVALNSVPKVAIAPLFVIWLGTGAEPKIAIAFLIAVFAVIVDTVHGLKSVPQDVLDLGRVLK
GSRRDFFFKVRLPGALPSIVTGMKVAVSLALVGAIVGEFVSSQRGLGYVIMSAQGTFDTVRVFAALTVLAVMGMALFALL
VWFERKATPWRTPVEGH
>SEQF2266_AEE66060.1 hypothetical protein BPTD_0603 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWALLALSRGIDALNLRVGRAVTWVTLLVVLVSAGNAVVRKVFHSSSNAWLELQWYMFGAMFLLTAGYTLLKNEHVRVDI
LSSRLPRHKQIWIEIFGVVFFLLPACTLIMVLSWPVFMDSYLSGEQSSNSGGLIRWPVKLLIPVGFALLVLAGLSHLIKC
IGFLRGQCPDPTAREGSKSAEELLAEEIAREALEREASVQEQRNNHEGR
>SEQF2266_AEE66061.1 hypothetical protein BPTD_0604 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFLIANLAPIMFATLVLFLLLGFPVAFALAANGILYGLVGIELDLLSPALFQALPQRVFGIISNDTLLAVPFFTLMGLV
LERSGMAEDLLETIGQVFGPLRGGLAIAVVFVGAMLAATTGVVSASVISMGLISLPIMLRYGYDRRLASGVIAASGTLSQ
IIPPSLVLIILADQLGRSIGDMYRAAMVPGFVLAGAYIAYVVIVSLVKPSAAPALPEEARRFREPNGSRGGRSLLVLMLI
SSLSAYVLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIANKVFRLKMLSALAERVTFVMIPPLFLIFLVLGTIFIGVAT
PTEGGAMGAVGAIIMALIRRRLTLDLLKQAMDTTTKLSCFVVFILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFLI
VVSVLTFVLAFFLDFFELAFIIVPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFGFALFYLRSVAPKDAYKDKITGK
IIQPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMHYKGGQSTVDPASVKIEVEGGYGGSVYGGGDATPFK
>SEQF2266_AEE66062.1 carboxylate-amine ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEQIPFVSSAPNTLGIELELQLVDPRSFDLAAASDELLAQLANHPIADRVKPEITRSMIELNSSVHEHPAGLLAEMREMR
DVLCEAADAVGVGVTGGGAHPFMRWQDRAISDTPRFQYLAEMYGYLARQFTVFGQHIHLGVPSGDAAVRMVRGLSPYVPH
FIALSAASPYCEGVDTLFSCCRLNAVNSFPLAGHMPADVTDWYRFEAHLAQLCASGLAESIKDLYWDIRPKPEYGTVEIR
VCDTPLTVERACQLAAFAQALAVQVARDPEPSQQAWLAYRSNHFQACRFGLHGSYVTPDGQRVRLVDHLRALFERLAPVA
EELGTGDMLQTLRDEILRNGNDARWLRGQFLKVRELPLVVESMAQNWRGQGVQDTPPSAVRRRIRATSEPVGGVCALSTP
QGDPLPGWAERLH
>SEQF2266_AEE66063.1 hypothetical protein BPTD_0606 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLPSSLPSLPIVAADVVRQFSRRGDLAQAQFLYGEVAQRMMGRLRYIRLQPAALLDAGCGAGASLPLLRDRFPSAAYTG
LDAAEPLLAHARQAWTPGGVAAWLGRLAQRGKPAVSFVRADLAASGLPPEQLDLVWSNLALHWHPEPHAVLAEWRRILKV
GGLAMFSCLGPGTLRELREALADAGLRTATPTFVDMHDFGDLLVENGFADPVMDQETLTLTYETPQRLLEDVRALGGNPA
RDRRAGLAGRAWLDRLHAALEARRGPQGRISLSIEVAYGHAWRAPARRAAPGETHLSVSAIGGRRAG
>SEQF2266_AEE66064.1 hypothetical protein BPTD_0607 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAALGPATPRCPCCAVRLAPRARHCADCLRLRPAYQRVVAALDYAGPYRGLISRYKTACRHELAVALADLMLRAIRQADP
PLRGPCLLVPVPASAASLRRRGFNPAAELVAALAARLGWPLARTQLRPARVLAGRQTLRGRRDRLRGATGRWRALPVPAG
ATVALVDDVVTTGATAHCAARALLAAGAGRVIVLAAARTPASHG
>SEQF2266_AEE66065.1 rRNA methylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFHVVLVSPEIPPNTGNAIRLCANTGAQLHLVRPLGFELDDARLRRAGLDYHEWQPVQVHDTLPQALAATGAAAPRIFAL
TTRARTSLADMAFQAGDVFVFGRETAGLSEAHMALFGPAQQLRLPMRPGQRSLNLSNAVAVTVFEAWRQSGYAGSI
>SEQF2266_AEE66066.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQARPATLRVAVLGAGSWGTALAAAASRRHPTVLWARDGAQAQAMAARHENTRYLPGVALPHALQVSADLAQALAHLAH
DPAHALIILGVPVAGMTPLCTELAARLPALGLQAVPLVWTCKGFEEQTARLPHETVQAALGAMPGLAAGVLSGPSFAREV
AQGLPVALTVASGSSAVRDAVTTALHGAAVRIYASTDVVGVEVGGALKNVIAVACGICDGLALGTNARAALITRGLAEMA
RFGAALGAQQETFAGLTGLGDLVLTATGELSRNRRVGLEIGAGRKLADILASGMTAEGVRCARAARDRARALNIELPITE
AVCAVLFEGLSPMTAVSALLAREARPESPTP
>SEQF2266_AEE66067.1 preprotein translocase subunit SecB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADQDQTNQQAGSDAPSFNLQRVYLKDLSLEMPNAPHVFLEQEAPQVEVSINVGGQRLAETVFESTVTVTVTTRVNDKVL
YLVEGTQAGIFELANIPAEQMDPLLGIVCPTMLYPYLRANVADAITRTSLPALHLAEVNFQALYEQRLAEMAQQQPDAAN
GNDSGIILPPGATRQ
>SEQF2266_AEE66068.1 glutaredoxin 3 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQKVVMYSKDYCPYCARAQALLKQRGVADLEIIRIDQDPSQRDIMIERTGRRTVPQIFIGETHVGGSDDLQALDRSGGLL
PLLNGG
>SEQF2266_AEE66069.1 hypothetical protein BPTD_0613 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLLQFLIDKNNVFIVAVAVVSGIMLMLPALRKGRAGAAVGTSEAIQMVNQRQAVWVDVRPTEQFQAGHIAQARSLPAAD
LEKKAGALPKNKPLIVVCEQGRDAARIAARLRSQGFAEVSVLEGGMRAWFAAGLPVTQKG
>SEQF2266_AEE66070.1 phosphoglyceromutase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYKLVLMRHGESQWNLENRFTGWTDVDLTETGREQARKAGELLKREGYAFDLAYTSVLKRAIRTLWIALDAMDAMYTPVG
INWRLNERHYGQLQGLNKAETAAKYGDEQVLIWRRAYAIAPEPLDLEDPRHPRFDGRYAKIPADQLPATECLKDTVARVL
PFWNESIAPAIRAGRRVLVAAHGNSLRALIKHLDNVSDDDIVGVNIPTGQPLVYELDEDLKPIRHYYLGDAAEIEAAMAA
VAAQGKAKKD
>SEQF2266_AEE66071.1 putative peptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVAAGLLVWAAVAVAPPAAWAVSDLAGRQSEAERQQAALRDRIDALQKEIDTREAARKEAADALKESESAISRINLRLR
ELGEASRKAEAELAGLEKQVVAQQAVLQKRRAELADQLRTQYTSGLSPWTALLSGDDPQQLGRNLGYLDYVSRARAQAVH
ALREDIARLAALQGQADARRDDIQTLVAETSSQKAALVEQQKTRATLLAKLEGQIAAQRAEAGKLGRDDQRLSHLIDDLG
SAIARQAEEDARRRAAEEARRKEEEARQAEAARRAEAARQQEAARQAAAAREADARRQAETARQAQQARDAEARDAAAAR
EQAEAAARQGRGPVALADPDAAGLRQVEGGRLVDPQAAPPRETRPAARAEPAEPAPREAAPARTASAAPVGGGNGLRRGL
PMPVRGTIQGRFGVDRPDGGVWRGLVLRTAEGTPVKVVAPGTVVYAEWLRGFGNLIIVDHGQQYLTVYAYNQSLLKRVGD
RVAAGDTIATVGATGGQVESGLYFEIRHRGAPVDPAQWLAQ
>SEQF2266_AEE66072.1 putative carboxy-terminal processing protease precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTRKFRGFGLVAIGAVAGILLSVGVSAVAQRGSPLPLDELRQLSNVFAAIKNNYVEAVDDKTLIGNAISGMVSNLDPHS
AYLDADAFREMQTATQGEFGGLGIEVGAEDGFVKVISPIEDTPAARAGIQAGDLIIKIDDTPTKGMSLNDAVKLMRGAPK
SPITLTIMRADRPQPIVVKIVRDIIKVRSVRSKMLDSNVAYLRIAQFQEKTGPDLARHLKELGAKGAPKSLVLDLRNDPG
GLLTSAIGVAGAFLPPDALVVSTDGRTPDSRHKYRATPSEYARGEGNYLNDLPGWVKTVPMVVLVNVGSASASEIVAGAL
QDHKRAKVLGNRTFGKGSVQVILPLSESTAVKLTTSRYFTPSGRSIQATGIEPDYVVADTADGDLFRLPREADLQRHLSN
QQSPDAEVKSNNDDNTEVAGKAFEFGGKDDFQLQQALNLLAGKPVQKGSARAQAKADIKPSEGKTQRMTITPTGVEPAKS
K
>SEQF2266_AEE66073.1 adenylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDQQLLRYARHILLDELGIEGQERFLAARVLIIGAGGLGCPAALYLATAGVGHITLVDDDVVELSNLQRQILHASDSVG
RAKAESGRDMLARFNPETQVEARVERLGGAALDAAVAQADVVLDCSDNFATRHAINRACVRHRKPLVSGAAIRFDGQVSV
YDLRDAQAPCYHCLFPEADDVEELNCATTGVFAPLVGIIGSGQAAEALKLLAGIGQSLAGRLLQLDVRSMQWHSVNVPRD
PDCAVCGQGGQAAEHARGDAAHCA
>SEQF2266_AEE66074.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66075.1 hypothetical protein BPTD_0619 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHRLIRSTLLAATLAALGPAQAADADGYPQGPISYVVPAPPGGLIDTMARTVAETMGRELKQPVVIENKPGGNTNIGIAY
VARAKPDGLTWLAVSSTLAVNATLFKQLPFDPEKDLIPVALFATTPMGMAVPANSPYSNVQDIIKAAKSGKVLNVGSSGF
GTPPHLALVLFQRLTGAKFNHIPYKGGAPSLNDLVGGQLDLIFTTLSESRSFIHAGRLKLLAVSSSERVKEFPSVPTTGE
QGLPDMLIAGWTGLMMPAGTPAPIVDSISAKLVAEVAKPAMKQKLEDLGYVVAPQDHARFTRFYRDEIRKWGDVIIQENI
ERM
>SEQF2266_AEE66076.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEKNRRGIQSVELGSRVLQALAQFGRPAGLTELAQECDMPPGKVHPYLVSFMKVGFVARDPASGLYELGHLALELGLAKL
HRLDPVREASQAIADLAAETGHGTGLVVWGNLGPTLIRLEEPAHPLHVNLRIGTVMSLVHTATGRLFAAYLPAKVVSRVL
EADPMGVHFGSRHQSRPAQEDYERQLSEIRSRGISRTLGSPIPGIDAFCAPVFDSMGHIAAGLLVMGPSATFDSDWDGQI
ATRLHACANDISRKLGYIDTPASPRAAR
>SEQF2266_AEE66077.1 hypothetical protein BPTD_0622 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRHSLRIAVLAASALLGAVGPAHAYPTKPVTIVVPFPAGSQTDMVARIAGAELERRLGKPFVVENKPGASGSIAAKYVAD
SAPDGSTLLLTTAAIQAMNKSLFKQPSYDPVKDFTPVAQIATTSMMLMTRPDFPADNVEELVALARKDGNAMSAGYGSSG
AQIALALFQARAGTDVLAVPYKGIPNAVTDVIGKTITFTFVDVGNALRFQQGKQLKPLAIASARRSRLAPSVPSLSESLK
DYNITSWYGLVGPKAMPDSVAQSLAQALQASLADAATVEKLAVAGVEPAYMPPAPFGKHIELEVDNWARLVQLARIEPQ
>SEQF2266_AEE66078.1 hypothetical protein BPTD_0623 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIIDFRLRPPAMGFLNARIYTRPDIRNRFTRQLGFEPAPSAEEKSLELMFEEMAAAGIEQGVCVGRNSSVLGSVSNADV
AAVAKAYPDKFHPVGSIEAATRKEAMTQMQEILDLGIRIVNLEPGVWATPMHVDDRRLYPLYAFCEDNGIPVIMMTGGNA
GPDITYTNPEHIDRVLGDFPDLTVVSSHGNWPWVQEIIHVAFRRPNLYLSPDMYLYNLPGHADFIQAANSFLADRMLFGT
AYPMCPLKEYTEWFLTLPIKPDAMEKILHGNAERLLAQAGR
>SEQF2266_AEE66079.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHQLKREALLREAIAAFNQKGFHATSLGDIATSLGVTKAALYHYFPNKHALLFEAFAEALRVGFEAIEAAERHGGSGLDK
LQMAVREYLQVTLSEMSRCVIITEEHALEPQDRAKIVEQRDRFEAKLRGFVREGIEDGSVIPCDPKLAIFSIFGAVNWVP
KWFSDSGNWSNKQLAKGMSELLCRAVARHPAEAFAPDIGKMRVE
>SEQF2266_AEE66080.1 dihydrolipoamide dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASTMETDLLVLGGGPGGYTAAFRAADLGLSVVLVEQRPTLGGVCLNVGCIPSKALLHCAKALDEARAMSELGIEFSEPR
IRLDKLRAHKEALVAKLCGGLGGLARQRKVEVVTGTGRFDGPHSLAVSDGSRVAFKQAVIAVGSRPVRLPFLPDDPRIMD
STGALELKEIPRRLLVIGGGVIGMELATVYAALGARVTVVELTDGLLPGCDRDLVKPLAQRVASRYEAVLLGTRVSAAQA
RDDGIHVSFDGPQAPGPQVYDQVLVAAGRRPNGAAIDAERAGARVDEGGFIRVDAQQRTNVGHIYAIGDVVGEPMLAHKA
AHEGKVAAETAAGMRVANDARVIPAVAYTDPEVAWVGLTETAAQRDGIAYEKAAFPWAASGRALSLGRGEGLTKILVDPA
THALLGVGMVGPQAGDLIAEAALAIEMGAEPGDIALTIHPHPTLSETLAFAAEAYEGTLTELYLTRKKS
>SEQF2266_AEE66081.1 branched-chain amino acid ABC transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLEVRNLQVSYGAIDAVRGVTLTAQPDGITALIGANGAGKSSLMRAISGVTPARGGQILLDGVDITRMPPYERARHGIAH
AMEGRRIFHQHTVEENLITAWHFRKPKGNFKAALESVYGNFPILEQRRGAKAGTLSGGQQQMLILSMATLHQPRCVLLDE
PSLGLAPIVVSQIFDFIKQYCAQGGRVVLLSEQMASLALRVADFGYVLKHGQTVFEGTREQLASGAGGDLSSAYLGAGKA
RPVPTE
>SEQF2266_AEE66082.1 branched-chain amino acid ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPMKLLGQLLTNSWTLGVLAIALAVGAGHADTGTVQMWSFVIINILLAQGINLLTGINGQISLGHAGFFAIGAYVSAIA
LKSWGVPFPVALAMATIVASGVGFLLAGPAGRVREFYLAMMSLGFGLIVYELARELRGVTGGVMGMRGIPSSQIGTLQIF
GWSIDTVAYFRILLAVLLVVMLMLRNFVKSHYGRAFYAVHVSEIAAGSLGISQAAVKRAAYAISGGLAGLAGGFYAHMIG
YLTPESFGLMRSIEILVMSIVGGLGSLAGQVYGAVLFTYLPQKLQAFNDYQYIVYGLILVFIFTLLPRGLAGLLGTQTRY
SKYDQLRRAVAGQPAAPLGERPSHARRDAAQPLIRVEQVVMEFAGLRALAGVSLDLHAGSITALVGPNGSGKSTLVNVVS
GIYRPTSGRVLYKGQDIAGWPSHKVAQAGITRTFQDPRNVPSFTVRENILMGAHRRYRHGALAAAVNTAGARREEAAFLR
QVDALMQAAGLSEHADAIMSELPYGIQRLAEVARALASDPELLLLDEPAAGLSELESGHLIGLVRLARDHGVAVMVIDHH
MDFLAELAEDVVVFEAGDEIYRGDMDGMRADPAVIQAYLGAEEPAHA
>SEQF2266_AEE66083.1 branched-chain amino acid ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDFFIQMIVSGLSVGAVYALIGLGLNLTFWTTRVLNFGQGSVLMAGAMLTAVMVGAGVNVFLAVGVSLLVTAFILWIVEL
VGVRPMRRMSGSMGWVVSTLGIGIFLQGMASWLFGTQAVAFPDVLFSSADTVEFMGAYISLQYIAVFVISVMIVCLMELF
LRHSIWGYGVRAVAHDRDLAALMGIPVYRVVVFSFLVSGVLAGIAGILVSQVSGTVDPNFGLHLLILAFVAAVVGGMGSA
FGSLVGGLILGIMEKLVGGYVSPAAAEVVAFVLLIGVLTIRPQGLFGKRETVKV
>SEQF2266_AEE66084.1 putative leu/Ile/val-binding protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSWYRKSTTCLAVAAAVLASGAALAADTIKIGMTSALTGPYNEFGEGNRRAVELAVEQWNAKGGINGKKIEIAMLLDDQL
NPDRAVQNIRAILDNKDIIGIIGPAGSGPMLAVIDMVQADGRPYMNPIAQTPVVTYPGEKTGEKPRPNVFSFALQNDIEA
VAMGEYLAKKFKRVGIIHESTAYGVTGVDYLAASIAKNGGAKPVATDSYNQGAQDMTAQVARMKRANVDAIAAIGLGKDL
AVLRRTMARLNVNVPLAASNGALGQPYQEGAGELTLGTLGTMIGAFGNPMRAPAADFAKAYKAKYGTDRWWGNDPENPQL
FMAISVSNGYDAANILFEGIRLANSTDPKAVIAAIESIKDYQGVNTAYTFSKERHHGIETDGVKVFEYVKKGDKIRLEPI
AQ
>SEQF2266_AEE66085.1 acyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFNLSASIAFHARRTPDKAAIVYRDQEIGYAEFHQRILQAAAMLHARGIGQNDVVALFMKNSAAFLELAFAASYLGAVFL
PVNYRLAAPEAAYILGDAGAKLLLVDEEFDAIVALETPKIVIDAQAQADSRRLGQPGLEIPPQAAVAETDLVRLMYTSGT
TSRPKGVMHSYGNLHWKSIDHVIALGLTASEKLLVVGPLYHVGAFDLPGIAVLWVGGTLCVHREFDPEAVLASIERHRLT
CGWMAPVMLSRVLTVPDPDRFDLDTFAWCIAGGEKTPESRIRDFTRVFTRGRFVDGFGMTETCSGDTLMEAGREIEKIGS
TGRALPHVEIRIADGAGGWLPANRKGEICMRGPKVTKGYWNAPEKTAEAFYGDWLRSGDVGYLDEEGFLFVTDRTKDMIL
TGAENVASSEVEAALYELPQIAEAAVIGVHDDKWGERITAVVVLNPGQTLTLEEIDRHCRQRLASFKVPRELKVVAELPR
NPSGKVLKRVLRDEYNG
>SEQF2266_AEE66086.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDFSLSDEQKLIVETARRIGEDYGVDYWHDLDRRKAFPQECWQAICDAGLAGVALPQEHGGSGLGMLDLALIVEELSAGG
GGATLGQLFMINPIFGGVPISKFGSEQMKRELLPALVGGKMNFCMALTEPDAGTNTLAMKSYAEAEPGGGWRLNGRKIWI
TAVDAAQKMLVVVRTSRQTEGARPSDGISMFIIDVEREGLSYSAIDKVGTQTLSACSVFFDNVRIEPHELVGTLDKGFRE
LLDVLNTERIVTTASLIGAGRLAKRLAVQYANDRKVFGGKPISSYQGLQFPLAQSHAELQCARLMNLKAAALCDQRLPYG
TEANIAKLIGSQAASHAIERSMQTMGGMGYAREFHVERLWSDARLFKFAPVSEEMILNYIAIHDLGMPKSY
>SEQF2266_AEE66087.1 enoyl-CoA hydratase/isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEQSILTEVRDHVGIITINRPKLHNALDTPTLLELERALTTLEADAECRVIVVTGAGEKSFVAGGDLVDLNSRQGLAHY
QEFAEDIHHVFRRFETSDKPTIAAVNGWALGGGTELLLCLDLRIVADNAAIALTEVNLGLFPGAGGTQRIIRQISPCQAK
EMMFTGGRISAADAVRIGLANRAVPAADLMAETLALAGQIAAKSPLVLKLLKRTLRDGADMPLANALAHEQAMIGLVLDT
RDAHEGIGAFLEKRAARFTGQ
>SEQF2266_AEE66088.1 putative pyruvate dehydrogenase E1 beta subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAELRFAHAINRALAECMEEDPMVFLFGEDIAEAGGPFGVTRGLHDRFGSDRIRDTPISEATMANAAVGAALSGLKPVLE
IMFMDFMTLTMDALVNQAAKARFMFGGQASVPMVVRTPHGGGISAGPQHSQCLEAWFAHIPGLKVVCPSNPADAYGLLKS
AIRDPDPVVFVENKALYAAKGEVPDDVGPIPLGQARIARAGRDLTVVSYGAMVHKVERAAEALARDGIEAEVLDLRSIQP
WDEAAVLASLRRTHRLLIVHEAVEAFGVGAEIAARMADIGFDELDAPIVRVAAPFVPVPFAPSLEAQYQPQEADIIAAAR
KLCA
>SEQF2266_AEE66089.1 putative pyruvate dehydrogenase E1 component, alpha subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARANKEQLLDAYQRMLGIRLVELRLGRLFADGEVPGFIHLSVGQEAVAAAMGMVLRPDDTVASTHRGHGHALAKGIDMD
DFFLELMAREEGICKGRGGSMHVANMSIGMLGANAIVGASIPIALGSALAHQVRKTDALAVAFFGDGAMAEGGLHESLNL
AALWQLPLLFLCENNGWAEFSPTHKQFVAPLDKLSAAFSIPHAKVDGNDVLAVMDAAQAAVADIRAGKGPRVLECITHRW
RGHYEGDPQKYRDSDEISGLDEHDPVARFEAVLDSKGVSQAQRQKVRDAVQAQVDQAVERARKGRPPVWETARTDVYTQA
EAR
>SEQF2266_AEE66090.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHFHFSWREKFSVFRMAAEPPEKLVGALVGGLRVLRYLSAAPAGVGVTRVARDLQLNSSTCYNFLKTLVYEGLVTFDES
TKTYSIALGLVELAKGVLEQGAYVRLIHPHLEEIARAHRVTATLWQRTSNERVVLVDRADNDSSVRVHMSVGQRLPMYIA
ALGRCMAANAGLDRDQLEQRFNALRWDDKPPFDEYLAGVQEARKNGYATDAGHYVKGVSTASAAVLDAFGKPVMAISAVG
FSAQFTGDALEQLGEDLHERAGRITRALSGGRAGADS
>SEQF2266_AEE66091.1 hypothetical protein BPTD_0640 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIGTSFPRISSRLAGALLATLAVAPMQAYAQQAYPSKPIEIIVASSAGGILDTIARAAAYGLERLGQSAVAKNLPGGGG
TIATAALARMPGDGYTLGAVATSHAINPNIYNKLAYDTGRDFTNITQMVELTNFLVVNPSVPASNLKEFIALAKAKPGTL
TYGSAGVGQSNHLSGELLQQDAGIKLVHVPYRGSAQALTDVIGGSVSAMFVDALSAEPYVKAGKLKLIAATGLARSPAYP
DYPTLAESGLPGFNGNTWLGLVAPAGVPKDIVAKLQDAVRAEFEDPDVRKRLISQGVIPVASTPQAFSAFLDSEMKRWAE
VIKVAGIEAN
>SEQF2266_AEE66092.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLSFAFSSEHEAVRDTVRRLCQEELAPLVFEAEEQEAFPRRVFERWGELGLLGVRYPEADGGSGLDKVSDCIVREELSY
LSQAFASTWSAHTHLGIWPIWKAGTPAQKARFLAPALAGRKVAGFGLSEPDGGSNVRAMKTRAERVEGGWRLHGSKLYIT
NAPFADFLLVAARTSAALKPESISLFIVELPNAGFDIAKLKKEGIRASETALIHIDNAFVPDDCLLGETEGTYPLILESL
SENRVGVAANALGMARAAFDAAASFANDRLVAGKRVGEYQAIAHKLADMSAQIEATRWLVYYGAWRVDQGTLDAATAARV
KLVASETAVAVSEQAIRIFGGAGIMREYPVGRIHRDALVYVIGEDTSEIQKNIIARSLGFKP
>SEQF2266_AEE66093.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDYVLRERRGATFVITLNRPERRNAFDLEVRQSLAEAIFEARDDDAVKAVIITGTQGVFCAGGDLKSLSDGKRPIYQDR
DRIRRLHTWFHELVNLEKPVIAAVDGPAFGAGFNLALACDFILGTPAARFCAVFGRIGLVPDLGGFFLLPRIVGLQQAKE
LVFTAREVGADEARALGILYRVVPAPGLLDEALALAARFHSASTLALGMSKNILNRSFNLDQNTLAELESHAQALAIHSE
YHEAAVARFLDKQPLPFSWPGEDKDGQS
>SEQF2266_AEE66094.1 hypothetical protein BPTD_0643 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMNAFITGASDTSVGELPGSSCMGLHAEAAFGAIADAGLEPGDIDGVLCAYSFTEPHLMLGSVFCEYTGIHPGFCTAVQ
AGGASACIMIMQAAALVASGQCRHVLVVTGDNHLTGLSRDGAVAALAEVGHPQFERPFGISVPASYALVAQRYMHEYGAT
PEHLAAIAVEHRRHAGRHPKAHKRDPISIDDVLNSREISTPLRLLDCCLISDGGAALVISSRAASAASSKRSVEILGAGQ
GHTHEHIVAAPSLTDFGCKASSARAFAAAGVRPADIDVAQIYDSFTITLLVELESIGFFERGQAGSAAMQGQLGLGGALP
CNTHGGLLSYGHSGAAGGMFHAVEAVHQLRGQADQRQVDGARLAFVHGDGGILSAHCSLVLGAA
>SEQF2266_AEE66095.1 hypothetical protein BPTD_0644 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKPPITPNAESLPFWQGCRDHRLRYQQCASCGTVQRIPRAVCTHCHGRALQWRDSAGQGVVLSHTTVRRAPTPAFKADT
PYAIALVDLDEGFRLMVNVRGGAGAPLAIGARVRIVFEARGDGAVPIAEMETP
>SEQF2266_AEE66096.1 hypothetical protein BPTD_0645 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQLYTYETFTPGTVLGEWAEPLDARLVATWGRLFGAEARDQPARQVGLTVALMIRAYLNVVTPRPPGNIHAQQILSIDG
LPGVGETVRSRIRCLGKEIRRERRYLQLEVSGVGERERNLYTGRMNLIWAA
>SEQF2266_AEE66097.1 hypothetical protein BPTD_0646 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRNTMTQRLEEVSMRVTQADIDIYAELTDDFNPLHVDPAFAATTPMGGTIAHGTLSVNLIWQSLARSLGAAALARIDLDI
RFLKPLFAGGAITAGGQPDAAEPDRYEVWVKGADGATLIAGHARLAPITD
>SEQF2266_AEE66098.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQFTHEHRELARTTRRIIAEHLDPYLDEWEAAQMFPAHQVMKALGSAGLLGIGKPAEYGGMALDFSYEMVFAETLGEVRS
SGLSSAIGVQSTMCTPALARHGSDALKRAYLAPTIAGDLVGCIGASEASAGSDVSQIKTWARRDGDDYVINGSKMWITNG
VQGDWICLLCNTSQEGGPHKNKSLIIVPLDTPGVSVSRKLDKLVLRASDTAELFFDDVRVPVSNRIGAENMGFIYQMEQF
QEERMFVAARGMRSMERVIEETIAYAGQRQVFGGTVLSNQVVYHKLAQMQTEIEALRSLLYRAIGQYLDGQDITQLASMA
KYCAGRLSMRIPNECLQFWGGQGVMNENWISRAYRDLRQTAIGGGANEIMLEVIAKTMGIHPGKRA
>SEQF2266_AEE66099.1 hypothetical protein BPTD_0648 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHGKNALRALLAGLALGATAAGAAPYPERPVRLIAPIAVGGLTDTLARLVASGLADKLGQPVVVENKPGAGGIIGMEAAA
QAAPDGYTLILVYQGVAAVNASLYKNLPYDTRRDFAPVAGLGNFPLVLVASPASGIQSVGALLERAGKQAKAPSYASAGN
ATTSHLTMELFKNASGLQALHVPYKGEGPANTDVAGGQVDIAFSSLASVAPLVKSGRLVALGISTPERSAVLPDVPTIAQ
AGVADFEAVGWYGLLAPAGTPAEVVAKLSDAVAAVLDQPAIRAKLEALGVNARATPAADFGRQIDAETEKWRAVIQTAGI
TLD
>SEQF2266_AEE66100.1 hypothetical protein BPTD_0649 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNHALAGITVLDFSQGIAGPHGACLLGEMGAEVIKIEPPAGDWLRGLGHRQGGTSVLFGYFNRGKAGVALDLKDHAQRR
QALALIDKADVLIESNRPGVMARLGLGYEQARQRNPGLVYISVTGFGQDGPHRDLPATDAAMQAYSGFSFGAGDMRDPVR
VRVSVVDIVTGVYVSNAALAALMARHGNQGQGQYIDLSLMHGISAVQGAKYAEHAATRGVISRELYAAIGIYPTRDGHIA
LSAMRDQQVTDFIGLAGRADLLADPRYATQQARYDNQDELRALIAAELAKQPTAHWIEAARRIDLICQPVQTYDQFRQDP
QVRTYELFQDMDLGYDMPLPAVRMPGMTATQASLRPPPRLGADTAAVLRRHGASPPSADATP
>SEQF2266_AEE66101.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLNLRQIEVFRAVMITGSIRGASELLFVSQPAVSRLLSHMEQRIGFALFERIRGRLYATLEARKLFHEVEAVYAGVQRV
NDMARDLFEHQEGILNLVASPSLGQMLIPAAIAQYRQAHPQVKLSFHHLTQAPLTERLLKRQADLALTILPAGHPNLEQE
EIGAARMVLICPPGHPLAGREPVGAEALAPYPLVAYERGSAFGQKLQAWFDAQSVAARPVIEVGSPQNTCALVQAGAGVA
LVDEFSARSWPGAGFVMRPVRDLAPLTAYLLRLREEPASHLMQSFIETLRRVMRRA
>SEQF2266_AEE66102.1 putative dihydrodipicolinate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQASHGARIDEQTSGVYVIAATPFADDGELDLASLDSLTDFYLDKDVAGLTILGMMGEASKLTEAETATVMTRILKRVDG
RVPVVVGVSHPSNRHLERLARQAMELGAAGVMVAPAAGRHTDDQVYGYYATVAERLGADIPICLQDFPQSAGVHTSVAVI
HRLVDDFPQVVMLKHEDFPGMRKLSQVRARSEAEGRRRISILVGNGGLFLPQEMLRGADGAMTGFAYPEMLVQVCRLFAA
GKAEAAEDLFNLYLPLLRHEFQYGIGLALRKETLRRRGAIRSAYVRQPGPALDAVDHAELGRLIARLEAQLGRAA
>SEQF2266_AEE66103.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66104.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66105.1 hypothetical protein BPTD_0654 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEVFAVDRAWGPVVEGQALVMREGFSPRYDLDRWSGVISRIGHSAEGESIKDRILVIPTAKGGVAGGWAFYDLLHKGIA
PKALVFGKLNPVMVQGAVLAGMPIMEGFDARLLQAIASGAALRLDPAAKSIALLG
>SEQF2266_AEE66106.1 hypothetical protein BPTD_0656 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLRNLIAGGLAATALGLGSVAAAAYPDKPIRIIVPFPAGGATDVVARMLGARLGEELGQSVIVENRSGAGGNIGADTVA
RSPADGYTLLVGSPAEVAINPLLYAKMPYDPAKDLVAVARVASAPLVLVVNARSPAHSVADLLAQIKGKDGAANYASSGT
GGPQHLAGEWFRLESRAGIAHIPYKGGAPAMTDLLGGQVDMFFSGLPPALPHLKAGKLRALAVTTPQRSALLPEVPTMAE
QGFAGFAIENWQGVFAPAGTPPEVIKLLSGKIGAITREPGFAERLQAQGASPAFMDAGDMARFVDAERRKYGKLVKESGA
KAD
>SEQF2266_AEE66107.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQQRLAGGSVPAVFKSRLRMKHLELFRNLCELHSLRKAAEASSMTQPAATKLIQELESMFGVPLFERDRRGMRPNAHGD
LIKRHFNVVMSDVGHMCDELALYASGGAGVVRLGIVPSLSAQLLARITDDLLSAHPNVRLELTEGATDRLMEGLRRNDLD
LIFGRILDRARISELRVVEVYTESFEVVSAAGHPLARKARVSWEDLSQARWILPATGSPLRDMAEQLFTGRGILRPVVSV
EYSSFHQMRYVIAGSQLIGLLPTSVALQGEAQGDIARLSPAERARFAPISLISRQDFEQPPVVRQFEAIVLRAARDLGQA
>SEQF2266_AEE66108.1 D-lactate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVHATPPTPGPGDSRGFVEQLRGIVGAAHVLTDEHRTRRYRAGFRFGFGRAIAVVRPGSLLEQWRIVQACVAHGKIVIMQ
AANTGLTGGSTPDGNDYDREIVIISTMRMKKIQLILDGRQVICFPGSTLDQLEQTLAPLGREPHSLIGSSCLGASVFGGI
CNNSEGSLIQRGPAYTELAVYAQLGEDGRLRLVNHLGVALGDSPEEILGRLDQGQFGANDVETAVGSGSDHEYAEHVRAV
DADSPARYNADPRRLFEASGSAGKLILFAVRLDTFPAETQTRVFYIGTNDPGELTAIRRHMLTRLPALPIAGEYLHRDAF
DIADVYGKDTFLAIRQLGTARLPRLFAIKARIDSFCERVPLLPKYLSDRVLQFASRLFPDHLPRRLREYRDAYAHHLMIK
VPGKIGDQTRRFLQAYFDDATGASFECTPEEGKAAFLLRFAAAGAAVRYRAVHAGQVEDIVALDIALKRNDRDWLEQLPP
DVEAPILMKLYYGHFFCHVFHQDYIVKKGEDCLALEHRMWKLLDERGAEYPAEHNVGHLYDAKPELKAFYRGLDPCNQFN
PGIGRTSKLQGWR
>SEQF2266_AEE66109.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDFSYSEEQRMLADSLRRFIETGYTFEKRRAIVCGDAGMDPAIWAGLAELGIQGLNVRAEHGGFGADAATQLVVQHELGR
GLVSEPITPSAVIATTIIQGHGNDEQRRAWLPGLAAGACIAATAYLEQGGRSNPEAVQTVAERAGEAYVLNGAKTLVWHG
AAADVLVVSARLAGTDGLSLFLVPTRGTAGLALASQPTMDGQRAASVRLADVRLPASALLGAPGAGLAALQAGLDWGIAA
LCAEAAGAMERLIELTAEYLRTRKQFGVPLASFQALQHRMADMLVQKELALSMAYVAAQALDEADAAARQRKLSAAKVVV
ARAGRYVGEQAIQLHGGMGMTDEMAPGDYFKRLAMIDPLLGGTDHHLDRYAALLQA
>SEQF2266_AEE66110.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLRFTSEEQAFREEVRGFLAQALPGELSEKVLAHQHLLRDDYIRWHRILHAHGWGAPGWPVEFGGTGWTPLQRLIFDIE
CGRAGAPRLLPFGLSMIAPVLMKYGSSAQQQRFLPRMPGVEDFWCQGYSEPGAGSDLASLRTRAERKGDRYVVNGQKTWT
TMAHWADWIFCLVRTDAEAKPQAGISLLLIDMKTPGITVRPIKTLDGGHDINETWFEDVEVPVENLVGEENRGWTYAKYL
LGHERTGIAGIGNCHRELAQLKRYAAATADGHGRTLIEDPRVRDKIVRIEMDVMALEMLLLRVATQAAGAPGPEASIVKI
RGSELQQDLAMLQMEIAGPDAWPFDSAWLDGGGQAVDSPAWAACATATYFDMRKTTIFGGVTEVQKNIISKAILGL
>SEQF2266_AEE66111.1 hypothetical protein BPTD_0661 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCIQIAARTSRLLRRLLFSLSAPLLLGAWAPTAMAADVAWPGLKPVTLIVGYPAGGGADTVARLVADRLGKKYNQRFIVE
NRSGASGTIAATVVARAPADGYTLLASASSELTVVPTIRTSLQYDPAKDFEPVAVTSQTTYLLVSNLEFPANTLQELVAY
AKKNPGKVSYGSYGQNTFTHLTGEYLQLLTGTKLLHVPYKGGGDLIPALLGNQIEISFNSPAEVLSQVQAGRMKALAVLS
PQRLKEMPSLPTSAKAGYPDLTARGWNGLMAPKGTPTQVLDELNAAVNEIMCSEDVVRDLQARGIEPGGGTRQAARERID
NELQRWRDVVEKVGLQRID
>SEQF2266_AEE66112.1 acetylornithine deacetylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSATGDLLARLVAFPTVSRESNLALSSFVQDYLAQAGVASELFYNEAGTKANLFATIGLRDRAGIVLSGHTDVVPVDGQ
PWTTDPFCLTEKDGRLHGRGTADMKGFIAAVLAAVPALVERPLRIPVHLAFSYDEELGCLGVGSMLAEIEKRAPLPSMCL
IGEPTLLRPVLGHKGKAAMRCQVKGHACHSAYAPSGVNAIEYAARLIGKLNEIGERLARPQHHDGRFDPPFSTVQTGTIA
GGRALNIVPAECEFDFEVRALPGFDPGLVQRELRTYADRELLPRMQAVNPETGIEMRPLSAYPGLATEAHSEAARLLAQW
CGSDDFGTAAYGSEGGLFSRSGIPTVICGPGSMDQGHKPDEFVSLQQLAQCDAMLARLVAHVREPAAQTE
>SEQF2266_AEE66113.1 hypothetical protein BPTD_0663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTFSIIGLCPDTGQLGVAISSSSIAVGARCPWLKPGVGAVSTQNITLPSLGPAILDLLAAGAAPRQALEQALDADPWRQH
RQVTVIDAQGRTASFTGSGALGVHHVVEAENCVAAGNLLSNTAVIGAMASAFERAAGPLADRLLAGMAAGVAAGGEAGPV
HSAALSLAGEVSWPIADLRVDWDEGCPIASLDALWQAYRPQMQDYLARALNPTVAPTYGVPGDE
>SEQF2266_AEE66114.1 putative endoribonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTHTRVRMFNTKDTYPNQTLDNDLCQAVRAGQTVYVRGQVGTDFEGRLVGLGDARAQTEQAMSNVKQLLEEAGSDLSHI
VKTTTYLVDPRYREPVYQEVGKWLKGVFPISTGLVVSALGQPQWLMEIDVIAVIPDGWQAQR
>SEQF2266_AEE66115.1 hypothetical protein BPTD_0665 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVDSPILTDTLVVGGGQAGIAMSEHLTGQGVPHIVLERDRIAQRWRTGRWDSLVANGPAWHDRFPGLEFEGLDPDGFAS
KDAVADYLEAYARKFNAPIRTGVEVVRAERNGGRYGFTVETSAGTYEAQRIVVATGPFQRPVIPAIAPRDPALTQIHSAD
YRNPGQLPEGAVLVIGAGSSGVQIADELQRAGREVYLSVGPHDRPPRRYRGRDFCWWLGVLGLWDQETVQPGREHVTIAV
SGTDGGRTIEFRALAHQGITLVGVTKSFRDGVVAFENDLAENVARGDANHFALLDAADAYIARNGLSLPDEPQARRVPPD
PACMTEPILQLDLAAANVTSIIWATGYAAEYGWLNVDAFDANGKPRHQRGVSSEPGVYFLGLPWLSRRGSAFLWGVWHDA
KHIAGHIAMQRNYLSYPDFGQSQQ
>SEQF2266_AEE66116.1 zinc-binding dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFDALVLEKNDDFNASVRQVDDSFLPDGDVTVDIHYSTLNYKDGLAITNRSPVVRDWPMVAGIDGAGIVRASENPAWRPG
DAVILNGFGVGEKHKGCLAQRARLRGDWLVRLPEGLSLRQAMAIGTAGYTAMLCVMALERNGVRPGDGPVLVTGATGGVG
SIAVLLLAKLGHQVVAVTGKASEAPYLRSLGAAEILDRAELSGQGKPLQKERWSAAVDVVGSHTLANVLAQTRYGGAVAA
CGLAQGADLPATVMPFILRGVSLIGVDSVMAPLEIRNQAWQRLAKDLDLAMLETLTREIALAEAIPAAHELMAGRVRGRI
LVGTGNA
>SEQF2266_AEE66117.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSRITLRQLEYCLAAGDYKSIAEAAACIHVSPSSISAAIAHIESELDAQVFVRHHAQGLSTTPLGEDLLKQMRGVLDQT
AGLYGIVSDAQSSIRGPLRVGCFTTLAAMVTPELCQGFSRAHPQVQVTHVEDHHEGLIERLYKGQIDVAVTYDLEVQGTD
ITFEPLATLPPHVIVGETSPLAQQRVADLKGLAEHPMVLLDLPRSREYFFGLFHAQQLEPLVAARSGSPDVVRSLVANGV
GYSLVNVRPRMSHSLDGKRVLSLRLAGKHQPMRLGMAWIPVPRPRRVLEAFMQRCRTYISDEHVPGMVAPSHFM
>SEQF2266_AEE66118.1 putative acetyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDNASVSPGFTRPPRLSVARIVAPGSIAVVGASDDLKKFGGRIIHYVTRNGYRGTVIPVNPRRAEVAGLLAVPSIAHLGP
VDVAILALPVDMIEQAIGECAAAGVGACVIVSAGFAELGDEGVARQDRIVRIAREAGMRLVGPNCMGIINPHHRMALTSS
LVVEQGELLPGNIGLISQSGALMVSMYDRACREQIRFSACVSLGNQCDLEICDFFEYMIDDPLTRVITMYVEGFVDTGRF
AKLARRAQRAGKPVLLTKTGRTAAGAEAARSHTASLAGNYRALEALCEATGVTIVDDPDGMLQLAAILARFGRCAAEGVG
IVSPSGGAIGIGVDRLSDVGIRLGRLDAASQQLLGTVMNPSHAFNPVDLGNRTTEEMSQLRTIVQAYNQAPDIGVIFVIL
TTSPHFEQVTLALGQAMAQAGGKPVLFLVTPGGVADNCRTLLQDLGLPYVDRMDDATRILRHYVPKADALPARDAPRPAS
WPMPEGAGRMLGARPGESEVKALLRAYGIPLAQERFCRTAEQAVEAARAIGFPVVLKAVSAQLVHKSDIGAVKLRLADDA
AVRRAWAEIEQALSSQVDGAVLDGCLVAEMVTAQSELLVGAINDAQFGPMIMVGFGGVTVELVPDTQLAVAPVDTEQAMA
LLRRLKQWPLLDGYRGMPKADVAAVAEVVSRVSWLIADLRDQVAELDINPLLIRAGDGKPIGVDARAAMLGPG
>SEQF2266_AEE66119.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGTIDITHEGAVSTMTINAPPLNVFSVEMLHALLEGLQALEQREQTRAIVIRGAGSRAFSAGANLNDQADFSEHDARML
RVIGREVVERIETLEKPVITAIEGWCIGGGTGIAWIGDIRIASDTAKFRAGDAYLGIIPTWSIGMVRLVHFLGRNRTLGL
LLLGEDIDAAAALELGLVTRVVPAGEFNEQVAQIAARLATAAPMSVKAIKLAVRAQYRDNTDRAAQLEEEWCTRIWASED
KNEGIAAFKEKRQPRFKGR
>SEQF2266_AEE66120.1 hypothetical protein BPTD_0670 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLRLAENFRAVFYAPFYALKALGHAGREGLEIEWLPPAGPGGAIDEVKAGAVDLTWGGPMRVIKDHDSAPDNGASLLSF
GEAVGRDPFSLVGRAGLAARGLHDLPSLRLGVVSEVPTPWYCLRADLHDRGIDIARDGRLVEALTMPQQVQALADGTLDV
AQLFEPCASQALAAGGRLLYDAASRGPTVYTTFICSRDGLARNGAALAALDRALRATQAWIHAHDARDLARLTAPFFTEL
APDILHAAIERYRRNGIWSETTHVNKEGFDRLACSLHSGGFVSSRIGYEACVHNFDH
>SEQF2266_AEE66121.1 hypothetical protein BPTD_0671 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAILHPLNFARGLCRLPRLALSASILLLASLASPAASAADAFPNRSIRMIAPFSAGGPADIVSRLYAQHLSDLMGQPVVV
LNRDGAGGIIGTNEAARAAPDGYTIVFGTTSTMVINQIISKKLPYDFFRDFSLVGLIANAPHVLAVRADFPARTVPELIA
LAKQHPGKYTFATSGIGTIVQMGGELLKYTAGINLMHVPYKGGGPATLALLGGEVDMTVNDLTTIKNHIASGKLRALAVA
DKNRLALLPDVATFTELGLPKMVSSTWWGIALPQATPADIQARFQAANSKIVANPDYAARLAELAVQPLVLTDQEARDFI
AAETQKWQTIANVADISVD
>SEQF2266_AEE66122.1 thymidine diphosphoglucose 4,6-dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVLVTGGAGFVGLNLIEQLLERGEDVVAFGPAPLPDAATAAMAHLPGRLSTVLGDVRRGADLDAALREHAVDRVVHGAA
VTAGLEREKNAAADIFTVNLLGAVKVMEAGLRHGVRQVVQLGTGSVFGAAGQVEGMLDETSAVLPETLYGISKFAAERTG
VRYRKTRGLNLTVLRLGTVFGRWEYDTGVRDTLSLPLQLSGIAEAGGQAVVHSLAADDWVYSVDVARGILAVLDRGQTPD
PVYHLSAGARWSVRDWCERLRERFPRFAYRMADNLDECTIGRDKAVQRAPMDIARLRRDTGYEPLYMLERAFDDYLAWRA
AVGRIA
>SEQF2266_AEE66123.1 glucosamine--fructose-6-phosphate aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCGIVGAVAQRDITPILIEGLKRLEYRGYDSCGVALYMDGHLRRTRSTKRVAELSEQVAEDKLGGFTGIAHTRWATHGIP
ATYNAHPHFSAQGKDEPRIALVHNGIIENHEELRQELQGVGYVFESQTDTEVIAHLVNHLYAGDLFEAVQQAVRRLQGAY
AIAVFCRDEPHRVVGARQGSPLVVGLGQNENFLASDALALAGTTDQIIYLEDGDVVDLQLARVWIVDQAGKQVERKAHTV
QVHTGAAELGPYRHFMQKEIFEQPRAVGDTLQDIESITPELFGDGAYKVFKEIDSLLILACGTSYYAGLTAKYWIESIAR
IPVAVEIASEYRYRDSVPNPNALVVTISQSGETADTLAALKHVRSLGMQHTLTVCNVVTSAMVRECELAYITRAGVEIGV
ASTKAFTTQLTALFLLTLALAQTRGRLTEEQEAEHLKALRHLPAAIGAVLALEPQIMAWADRFASKENALFLGRGMHYPI
ALEGALKLKEISYIHAEAYPAGELKHGPLALVTEHMPVVTIAPKDALLEKLKSNMQEVRARGGELYVFADADSKIANAEG
MHVIRMPEYYGALSPIVHTIPLQLLSYHTACVRGTDVDKPRNLAKSVTVE
>SEQF2266_AEE66124.1 transcription regulator AsnC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQNTPNPSVPLDDLDRRILDQMQRDCTLTNQELAARVHASPPTCLRRVRRLVDEGVIEKQVAIVAPAKVGSTLTAIVEIT
LDVQAAERLAEFEASLLDEPAVLQCYRVSPGPDFVVIVQVADMPAYHALAHRVFTAQANVRNVRTFFSVHRAKFETRIGI
GG
>SEQF2266_AEE66125.1 thiolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDAVIVSTARTPIGKARRGALNLTHGADLGAHAIRHAVLRAGLEAGEVEDVILGCGYPEGGTGRNVARLSALRAGMPVT
VSGMTVQRACSSGLQAIAIAAGRIRTEGVPAIVAGGVESVSLVLDHINRSSHRNEWLSAHLPGIDMTMIETADLVAQRYG
ISREAQDEYALRSQRLTAAAQEAGRFEHEIAPIRTTMRTIDPATGEAVLRQVECARDEGARPDTSLDNLARLAPVRGDGQ
FVTAGNASQLSDGAAACVLMSGREAARRGLEPLGVFRGFATVGCEPQEMGIGPVLAVPRLLERHGLTVDDIDLWELNEAF
ACQVLYCRDRLGIPDARLNVDGGAISIGHPFGMSGARMVGHALIEGRRRGARYVVVTMCVGGGMGAAGLLEVQQ
>SEQF2266_AEE66126.1 bifunctional enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNPDFEHIKPVVSVARHRNVAVLSVDNPPINALSDTVRAGLCSALREAEADPAVRAVVLACEGNTFVAGADIREFARAK
GAAEAIDVPAVIESCRKPVVAALHGQALGGGLELALACHGRVALAGCRLGLPEITLGLIPGGGGTQRLPRLIGLEAAAEL
ILSGATIDAETARESGLLDAVWPDRLRERAIEFAASLADSPAGVRRASTLAHPPMSPQTGQDLRKIAESRPAALRAPQAG
AAAVEALSAAAQPDFARGRALERELFARLRDGEESRALRALFFAERSARRVGLDDATSAPPMAHDAAVVGAGTMGRGIAI
ALADAGLRVRFIDVEQASLDRALEAIRAHYRSLAARGRMTEAAARDAVARISPASDMQAAAEADVVVEAAFEDLAIKQAI
FRQLDSIVRPGAVLATNTSTLDVDAIAAATRRPQDVVGTHFFSPANVMRLLEVVRGARTAPRTLGAVLALGRRMGKVCVT
VGVCDGFVANRMSAHRARQIELLLQHGALPQDIDQAAREFGFSMGPCAATDLAGLDISWRIRRGKGARSPIADALCELGR
FGQKVGRGYFSYAPGSRVAVPDPEVEALIRRMAEQLGIRRQSFDLATITDRLILPVINEGARVLQDGVARQARDIDLIWV
HGFGWPARRGGPMFHAERVGLASVCDRLARLADALEDASLQPAPLLRDLATRGAGFASLHAARQA
>SEQF2266_AEE66127.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLANHEVSPSRPRTADAAESIPNDCRGQNFWRLDPSLRQLLALCADTEELRHFTPHFDRLGELAGNTLDELADAADKHP
PTLAPRDRHGRDVDRIDYHPAYREMERIAFSEFGMAAIGHKPGVLGWPGHASPLVKYTLTYLFSQAEFGLLCPVNGNDAA
VGMIQRYADDTLKQRMAGMLSQDMRTLLKIGHFMTERTGGSDLAGIGTHARFDGSAWKIYGEKWFYSAIDADYVLVLARP
EGAPAGTRGLGMFVVPRLLEDGTRNRYRIARLKNKLGTRSMATGEVVFDGALAHAIGQGRDGIRYAVLPINASRLSHGVR
AAGMMRRCLNESLHFARRRAAFGKPVIAHPLMKRSLLKIMVPTEQALSACMFVASTMHRAGADDPRDRKIVRLATALLKF
RACRDNATVATAAMEVRGGSGYIEEWINARLVRDAQTGLLWEGTSNINALDIVTRAVARDAAHEALRQRLMELARDARVP
PRHGAALTQAVEEAVARIAAIAADPQLEHLARSASSRLYHVMTAVLLAHEGAMLAARTGDARRLLLSWMVLMHRIEHAEP
FDGEHARRESRAADLLLDVDRPVTLEALHAVTGMLDANAA
>SEQF2266_AEE66128.1 hypothetical protein BPTD_0678 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQKKRRALLSLLGASAFPALAGQAFGQGPAWPTRHLRFISGGAAGGTSDIVARNLQEPLQSKFGQSVVIENMPGVGGLIG
AGNAARATDGHTFFVSNLASNVLSVLLYEKVPFDWHTDLPGVARCCTLPNGLFVRSDTGITSAQQLFDTLRKDPEKRVFS
SAAIGTTSHLSCVMLGQRLGIDLLHIPFKGAAGNMLGLLQGDVFFTIENIPTFAALVKEGRLRLLAVSTAERSPNFPDVP
TIQESDIENFDVFSWFGISAARSTPRAAIDAVAAEILGQLAEPVMQTRFENLGMTVAGLGPDAYDKFIASEMADWGATVK
AAGLKPAK
>SEQF2266_AEE66129.1 acetyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTPSQSRRPGSGHTLTALFEPRSVAVVGASDDPSKIGGRPLHLLKAARFALPIYPVNPARSVVQGLDAYARITETPTRP
DLAIVAVPAAHVLATFDDVVAAGARAAIVYTSGFAEIGAEGVKVQAELTARARASGVRVLGPNCLGVINTRSKLIATFSG
AVGHAPPRPGSIGLASQSGALGAHCLVLAERRGIAFSVWATSGNESDIDVAELIAYMATDPGTHVIVACIEGVRDAGRLI
EALELARTHGKQIVMMKVGSSPIGAAAAASHTASMVGSDQVFDAVLREFGVYRAHSIEDMLDVAYALTVHQSPRGRSLAV
VTTSGGVGVLLADEAERLGVDMPELPAIAQARIRELLPYAGTRNPVDVTAQITNTPEILGPMLDALLASGTVGSLLLFLS
HLGLNAAMMRRLMPALTALSKRPGPQVRVACLLACDEVRQELEALGFSVFEDPTRAIRTVAALMEIATAQAQARPARTLP
RLPDTAHAVTPGMQYSETEAKRLVRSIGIQTLPERIAQDPAQAAAIATELGFPVALKIVSPEILHKSDVGGVQLAVQTAD
EARSVYTSMMARVRRNCPQARIDGIAIAPMARPGVDLILGCIQDPTFGPCLMLGSGGVYTEILADAVIRRAPFDAATARS
MIAQLKGAPLLDGARGMPRADTDALAQAVAMLSVYAYANRRHIESLEINPLRVLPAGQGVVALDALATTVRHPTEPGEAT
VCPAQEAHS
>SEQF2266_AEE66130.1 citrate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDMHHFTTAISKIVSTPQEEETIIRGHRLSDLIREQPFVASAFLLLTGRLPDAGEARTLDAVLTACVDHGVTPAAAIGR
TFASYGAPIAQAMAGAALLYGDVAGGVGDPLAAMMKQAIAEAGARNGAPGEHDVDAAAGNLVAAALRAGGRMPGFGNPPH
ARDPRPRVLLEVARCAGTAGIHCELLLAAERHLAAAKGRDIPINIDGIVAALALDLGLPDGCAAALVMIARKFSVLTHYL
EEKGQNTKWRHVPQECVHYTGPMPS
>SEQF2266_AEE66131.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGALRHACPGSRAAAFVLSGLQTMTNEVKSAVRVIQILEYFDTVRREAGVLEISRALGFPASSTAGILRSLQRLSYLVQ
DEQRLYRPTPRVTLLGSWIDPLLAHDGPLMALMSHLSKATGETIILALQVDAGARYIHIIPSTQRVRLHVNVGDVRPLLT
SGTGRLFVSTMEPDQVRRAVFRHNALRGANEPEINLSTVTRDATQIRKNGYATSLDRLVPGVGIIAALLPEREGTRPMAV
AVGGPSVTIRTRTAELASLLREGIGQYLPHLGNAGDQS
>SEQF2266_AEE66132.1 molybdopterin oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKERDTNAARPDGEPPVQWRRHSSHWGVFDAAHTGDRLKVRPFAGDPDPNRLIENLPDAIRHGVRVPEPMVRLGWLRDGP
GPDTRRGSDDYVPMSWDEILDRLARKLRRVVDHHGTAGVFGGSYGWSSAGRFHHAQSQLHRFLNVALGGYVRSVHSYSSG
AAQVVLPHVVGGFDEVTLCNVSWEQITRHTDVVLAFGGMALKNSRVAAGGVSRHIERQAMAQAAGRGCRFYTIGPQRDDL
PTEAAATWLPVVPGTDVALMLGIAHTLVAAGLHDRDFVVDFCDGWPVFEDYLLGRADGLAKNAAWAAALCGIDAAAITEL
ALGLAGKRVLVTVAHSLQRADHGEQPVWMGLVLAALLGQVGLEGGGYSYALGSISKYGRRKNAVSIAALPQGANHEKRFI
PCARIADMLLSPGETFPYNGRTLRYPHIRLAYWAGGNPFHHHQDLGRLAQAFQRLDTFVVHEIGWTATARHADIVLPCTM
TLERDDIGASPTDDLMVAMQQVVPPYADARNDYDIFSDLAQRMGCGAAMTEGRSASDWLQWIYAATREQLAAKGLDAPSF
DAFWEKGELRLPQRPDDGGAQRAFRLDPAAHPLPTPSGRIQIASAQIAAFGYDDCPGHPAWLPPADPVSAAYPLYLVANQ
PANKLHSQFDYGGYSQASKREGREVCTLHPALARAREIGEGDIVRIYSPRGSCLAAATLSTDIREDVVRLPTGAWYDPEQ
DERGLPMCVHGNPNAVTRDAGTSSLAQGCSGQLTAVQIEKYLGPLRDVRAYCPPAIATRPGPPGPLAPPAG
>SEQF2266_AEE66133.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF2266_AEE66134.1 glutamyl-tRNA reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVAVLAFGLNHTSAPVSVRERVSMPVDLVKPALEGLRATFGGAVREAAILSTCNRTELYCAAEGQVAEHLPAWLAEHNR
LEAAALRPHLYRHQHDDAVRHAFRVASGLDSMVLGEPQILGQMKDAVRAANEAGALGTLLHQLFQRTFSVAKEVRSQTAI
GAHSVSMAATAVRLAERVFGQLEDARTLFIGAGEMIELCATHFAAQRPRSMVVANRTIERAETLAGRFSAQTMKLADLTE
RLAEFDVIVSCTASSLPILGLGMVERATRQRRHRPMVMIDLAVPRDIEPEVGRLDDVYLYSVDDLGRLVQSGTDARRAAV
VQAEAIIETRVQGFMHWMQSREVVPVIRDLHQAADDVRAAELERARRMLARGESPEAVLEQLAHGLTQKYLHGPLAALNR
SEGDERRQLLAWVPRLFPGRDSRR
>SEQF2266_AEE66135.1 peptide chain release factor 1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPSMRSRLEQLAHRLIEVDALLAEPETAADMDRFRKLSRERAELEPVVEAFNAFLGVEADVATAQEMLSDPDMKAMAED
EIKTGRARIEEMEAALQLLLLPRDPDDGRSLFLEIRAGTGGDESALFSGDLLRMYTRYAETRGWRVEIMSESESELGGYK
EVIARIDGDGAYGRLKFESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQHINKT
DSAVRITHVPTGLVVECQDDRSQHRNKDKAMQVLAARLKDKEMRERQSKEAAERKSLIGSGDRSERIRTYNYPQGRVTDH
RINLTLYKLQQIMEGDLDELTGALLAEHQAEQLAALGHDL
>SEQF2266_AEE66136.1 heme biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLLKDLLADPGLPRLEARMLAEHVLGRSRAWLLAHDTDPVEPAHEAAWRQLAARRLAGEPMAYLLGGREFMGHWYALTP
DVLIPRPDTELLVETALHWLQGRAAPRVLDLGTGSGAIAVSVALGCPQAEVTATDLSAAALAVAEGNAQRLGARVRCLAG
DWYEALPAQDRYDLIVSNPPYIAREDAHLAQGDLRFEPRGALTDENDGLAALARIAGGAPGRLLPGGAIWMEHGWDQAEA
ARALLRQAGLREVHSRRDLAGIERISGGYL
>SEQF2266_AEE66137.1 hypothetical protein BPTD_0687 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDVQEFIRETVTQHPVVLFMKGTTQFPQCGFSGRAIQILKGCGVKKLVTVNVLEDDEVRQAIKTFSNWPTIPQLYVGGE
FIGGSDIMSEMNESGELKQLLDDSGATA
>SEQF2266_AEE66138.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRLVVGITGATGAIYAVRLLQALRGVSDVESHLIVSASGVLNIKHELDVGRHDVQALADHVHSVRDVGATLASGAFQTA
GMVIVPCSMRTLAAVAHGLSDNLITRAADVTLKERRRLVMMVRETPFNLAHLRNMTAVTEMGGIIFPPLPAFYHRPASIE
EMVDHTVARVLELFDIEVPGPHWAGM
>SEQF2266_AEE66139.1 hypothetical protein BPTD_0689 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRRSFLAKVAHIAAAVGVSACAATSSFAATGDFPNKPLDIIVTFPPGGGTDMLARLIGNYLTESLGQTAVVENRPGASG
NVGARLVADRAPDGYSLLMVNSSFAVNPGVFRNLPFDPKKDFAAVINVAYVPSVFVVPAGSKYKTLGELMAAAKQTNTQV
TYGSCGNGTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAGKLQALAVTSKERSALLP
EVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLGYSTASDGPEVFQKMVETDIDRFSA
LTKQIGLKVD
>SEQF2266_AEE66140.1 4,5-dihydroxyphthalate decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSKLKISLSCGDYDRTRALFDGRAPIEGCEVTAVPLEPEEAFHRAFRYHEYDVTEISMSSHMMTTARGDNEYIAIPAFL
SRVFRHSGIYVRTDRDIDKPQDLRGKTIGVPEYQITANVWIRGILEDAYGVKPQDIKWRRGGIEEPGRGERAPIELPDGI
DLQQIPDDKTLSDMLEAGEIDGYIGARAPSCFLRGAPNVGRLFNDYLKTEQDYFRETRIFPIMHMVGIRRSLVEQNPWLP
VSVYKAFLKAKMLAVKELNEICHLAVTLPWMVHHYNAARELMGDDYWPYGLDANRHVIETFARYHYGQGLSRRLVKPEEL
FAASSLDLSKI
>SEQF2266_AEE66141.1 2Fe-2S ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDITESTAQHVSLTVNGRACGGCAEPRMHLADFLRGELGLTGTHIGCEHGVCGACTVLVDGYSTRSCLMLAVQAQDSRI
DTIEGLAGEDDALHPIQQAFHELHALQCGYCTPGILMSVAELLAANPNPDEAQVRDVLSGHLCRCTGYQNIVAAVLRAAQ
LMRAEAGHD
>SEQF2266_AEE66142.1 dehydrogenase/oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDATSPGLGRSAPRIEDDALLRGQARFLDDIEVEGVLHACFVRSPHAHARLVSIDLSAARAVPGVAAVYGARDLFGQLT
SWRMPLGFPLAALPDDTTPFVLAEREVAFVGEAIAVVVADSRHIAEDAAARVAIEYEVLGAVVDCRDALRPDAPLVRGEL
ASNILQQYTLAYGDCETAFAQAHRVLEDDFWVHRGCAHPMEGRGVLARMDRATDTLTVWSSTQMAHELHYTLALMLGQPE
DRLRVVTPDVGGGFGAKFMIYPEEMAIPAAARKLGRPVKWVEDRREHFTTSIQERDQYWKVAMAIDDQGHVLGIRGNFVH
DNGAYTPQGTNVPYNAASSMTGPYVVPAFSLDVSVAYTNKVPVATVRGAGYPQAAFVMERMMDRVAAELGIDPGECRRRN
LIGPAKIPYTKPLKSRAGMPLTIDSGDFPALQACALQASDYDGFAVRRDAALARGRWRGIAVANSVEPTGRGPFEVARVR
VQPSGQVSIYTGALAMGQGIKTTLAQICAGHLGVPVAAVEVQAGDTAYVGYGMGGFASRQAIMAGSAVDQAAAQVRRQAL
ETAAAVLKAEAETLELADGEVRAPDGQSVSLARLAMLRKGVPGYALVSPGDPGLDATAYFHCDAQTYAGASHVCEVEVDP
ATGAIEIVRYVAAQDSGRIINPQLAEGQVHGGVVHGIGNALFEWMGYDAAGQPLSTTFAEYLLPTAPEVPPIEVVFQPSP
TPLNPLGVKGVGECATIPVAVAVVGAVEHAVAHCGVRVTEFPLTPVRLLELLTQAEARAAAPTDSGEFVDGVH
>SEQF2266_AEE66143.1 hypothetical protein BPTD_0695 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66144.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSNLDNVPDATPRLEPLASGPNRPYVVFGKRYVPDTSE
RPFRQQGLASWYGKKFHGNSTSNGESYDMYAMTAAHPTMPIPSYARVTSKINGRTVIVRVNDRGPFHSDRIMDLSYVAAH
KLGIIGPGSGPVTVERILPAEILAMNGGAAAPRPGPASATGPLPVAAPSAAAAVELHPATQLASNAPTPPRPAAGAGSGV
YLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNLYRVRIGPYATREAALGAVQPVADRTGILPSLSATP
>SEQF2266_AEE66145.1 hypothetical protein BPTD_0697 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANARDDAMERVAVAIDVRSPGELAELPDVITASRAMGT
SLSVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQ
ADRPPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYT
QDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRHRTQLPDDPA
>SEQF2266_AEE66146.1 cytochrome C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIIKRVLVVAILALLAAVATLYWLGTRDHVPAGPQAAPATGSADELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPT
PFGTLYGPNITPDAETGIGGWSADDFWQVLHNGKGPGGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQASRPHEL
ASPYDQRLLLAAWRALYFEPGGPQADPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAAEALGGGMIDGLGWYAPPL
TGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGSTQYLSGDDALAIGTYLKSLPAAASPPARRGAPSATVMEL
GGKLYGQHCAQCHQADGKGSFPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATAANPRPHGMPPFAQALPDNDIAMLVS
YVRNSWGNQAGAVTPLDVKRTRESGAGR
>SEQF2266_AEE66147.1 HPr kinase/phosphorylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTVQELVDDNADKIPFSWIAGHDAADRAISDDGMAAADLVGHLNLIHPSRIQVFGQEELAYYTRFDLRRRMHHMDELLI
GGVPAILLADGLTPPQDLIDQCAQHQVPLLSTPVAAAQLIDLLRIYLGKKLAPTTTVHGVFLDVLGLGVLITGESGLGKS
ELALELISRGHGLVADDAVELSRTAPGVIEGHCPQLLQNLLEVRGLGLLDIRTIFGETSVRRKMRLKLIVHLVRATAQDK
FERLPLQDITQDMLGLPIRKVMLQVAAGRNLAVLVEAAVRNTILKLRGIDTLGEFMERQAMAILQSSK
>SEQF2266_AEE66148.1 nitrogen regulatory IIA protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNHLSRILPAGNVVLDMLATSKKRAFEQAGLLFENHHGLARSVVFDSLFSRERLGSTALGQGVAVPHGRVKGLDQALAAF
IRLAQPIPFDAPDGQPVSMLLCLLVPEAATQQHLDILAELAQLMSNKPLREALASETDPAAVHRMLTTGQL
>SEQF2266_AEE66149.1 ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDSHATLSTATAAGAAAGSLRATGLRKTYNGRTVVQDVSLSVVSGEVVGLLGPNGAGKTTSFYMIVGLVPADSGRIEID
GSNITSMPIHKRARMGLSYLPQDASVFRRLTVEQNIRAVLELQLGPNGKPLPEARIRDNLEALLEELQIGHIRANTAISL
SGGERRRVEIARALATSPRFILLDEPFAGVDPIAVIEIQRIVRFLKGRGIGVLITDHNVRETLGICDRAYIISEGKVLTD
GHPDEIVGDPAVRRVYLGEHFRM
>SEQF2266_AEE66150.1 hypothetical protein BPTD_0704 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHLRLSLAPLRLCSILLLAAAGAAQAQAQSGQAAPAEEPSTLILSDTLHYDDIKRQSIFTGNVILTRGLMTLTSDKLEV
NEDAAGNQFGVATADKGKIVTIRQDRPETFELIEGKGLRAEYESSKSQFDLIGQAIVTRYICGKPFDTIRGDRVRYNEKT
GIYQAQGGPNSSAAGGRVRSLAEPRAKADAAIAECRAKKQAPKKPQ
>SEQF2266_AEE66151.1 hypothetical protein BPTD_0705 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKERFPSLIALFLLLALVVGTWWAADYAQRAVQVDPPRRLTHEMDSWARDFVMLRTDVQGHPINRLEGVYVEHFPDDDSY
HVTTPRAIGQQAGNPITIGVSKTAIMEQGGQRIVMNGDTHVHRQPDARNETLDVRSQQLILLPDEDVVFTDLPAQVNKGN
SRMNGTGMHYNNKTRQLRVSAAADVEIAGTEGRKRQSTETPANSNQNKP
>SEQF2266_AEE66152.1 hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKNSPVSVPHPAEALVLARIPASVRERAAAVRLMVFDVDGVLTDGGLYYGEHGEMFKRFHALDGHGLRLLMEGGLKVAL
ITGRSGPIADRRAAELGIAEVLQGVRDKGGALSELAQRVGVQLNQTGYMGDDIIDLPAMQRAGFAASVANAPGYVAQAAH
WVSSQPGGQGAVRECCDLLLAAQGRLGTFLGTPALLGPGAIQ
>SEQF2266_AEE66153.1 hypothetical protein BPTD_0707 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAHPDPTPEAILASARRTLQTEAQAIADLAARLDDSFVQVVGMLLACRGRVVVSGIGKTGHIARKLAATLASTGTPAFF
VHAAEAIHGDLGMVTRDDVLIAISYSGTGQELLTILPVVRRMGAGLIAITGNAESELARLADVHLDASVSQEACPLNLAP
TASTTAALALGDALAVACLEARGFGREDFARSHPGGALGRRLLTHVRDVMRHGPALPIVAEDAPLPRALEEISAKGMGMT
AVVDAQRKPVGIFTDGDLRRLIERVGDIRSLTVADGMTRAPRTIGPDALAAEAAQQMDDRRLNQMLVVDTAGVLIGALHT
HDLMAAKVV
>SEQF2266_AEE66154.1 phosphoribosylglycinamide formyltransferase 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTFPAPVLGTPLSPTATRVMLLGAGELGKEVVIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQER
PHVVVPEIEAIATDLLVALEDEGAVHVTPTARAAHLTMNREGIRRLAAETLGLPTSPYRFVDTEQALREAIDGGIGYPCV
IKPVMSSSGKGQSIIRSADDIAAAWRYAQEGGRVGAGRVIVEGFIEFDYEITLLTVRARGADGQIVTQFCEPIGHRQVDG
DYVESWQPHPMSPVALQRSREIALAVTGDLGGLGIFGVELFVAGDQVWFSEVSPRPHDTGMVTLISQVQNEFELHARALL
GLPVDTRLRQPGASSVIYGGVDARGVAFEGVAQALAEPGTDIRLFGKPESYAKRRMGVGLAVADDVDQARAKAARVSQAV
RVRA
>SEQF2266_AEE66155.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAHALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66156.1 hypothetical protein BPTD_0712 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHAIEIVATLLFSVAVLHTFSVPFFARLAHRNGPHAGVWHLLSEVEAVFGVWAFVLIACMALMAGTDRAVQYMDTRNFT
EPLFVFAIMVVASSRPILELVGSVVRLLAAMVPIRRELATFFIVMSIVPLGGSFITEPAAMTLAAILLRDGYFRCSGRAG
FKYMTLGVLFVNVSIGGVLTSYAAPPVLMVAATFGWDTAYMATHFGWRAAVAVFLNAGVLTMLCRQALLEGAVGTGAGVN
ASGDASEKRPPVPAPVTLMHLAFLVGIVLTAHHPAVFLGMLMMFIGFAHAYQRHQSRLMIREGLMVGFFLAGLVVLGGLQ
KWWLQDLLGGLEPTVLFWGATALTAITDNAALTYLGSLVEGTSEAWRYMLVAGAVTGGGLTVIANAPNPAGFAILGKYFP
DGSISSGRLFIAALVPTLVAAAMFMLPV
>SEQF2266_AEE66157.1 hypothetical protein BPTD_0713 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIYAYKCSACGHAEDVLQKISDAPLADCPACGQSTYSKQVTAAGFQLKGSGWYVTDFRNNNGAGKPAAGQSAAPAASGG
DAGGASASAATPAPAAPAATST
>SEQF2266_AEE66158.1 hypothetical protein BPTD_0714 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRHSVMRVFKKYFITGLLIWVPLAITVWVLGLLVATLEGFVPGFLSSQSLFGVDIPGFRFVLVITVVLLTGVFAANLLGR
SLLEHWERILGRIPLVRSIYNSVKQVSDTVLAPNGRAFRQAVLIQYPRAGSWTIAFLTGTPSGEVASYLPGEHLSVYVPT
TPNPTSGFFLMMPRDQVIDLQMSVDAALKYIVSMGVVAPADRRPVSPPTTPGAPLAPGAEP
>SEQF2266_AEE66159.1 aspartyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTCYTGQVCRDHLGQTVTLYGWVNRRRDHGGVIFIDLRDRTGLAQIVFDPDNAEAFGTAERLRNEFCISITGLVRLRPE
GTANAELASGEVEVLCQQVEILNASVTPPFQLDDDNLSETTRLTHRVLDLRRPQMQHNLMLRYRVSIEVRKYLDQLGFID
IETPMLTKSTPEGARDYLVPSRVNAGYFFALPQSPQLFKQMLMVSGFDRYYQITKCFRDEDLRADRQPEFTQIDCETSFL
NEVEIREIFEGMIRHVFKVVQDVDLPTPFPIMSWTEAMQRYGSDKPDLRVNLEFTDMTDVMRDVDFKVFASAATTAGSRV
VALRVQGGGEMSRSEIDAYTQFVGIYGAKGLAYIKVNDVAKGREGLQSPIVKNLHDAALAELVKRTGAQNGDIIFFGADR
AKVVNDAIGALRVKIGHSEFGKKAGLFSGGWKPLWVVDFPMFEYDEEENRYTAAHHPFTSPKDGHEDFLESDPGKAVAKA
YDMVLNGWEIGGGSVRIHREEVQSKVFRALKIDAEEAREKFGFLLDALQYGAPPHGGIAFGLDRIITMMAGAESIRDVIA
FPKTQRAQCLLTGAPSEVDEKQLRELHIRLRNVEVK
>SEQF2266_AEE66160.1 putative endonuclease/exonuclease/phosphatase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLIRVVSYNIHKGRSALGRRESLNDLRLGLYGLRPDLVFLQEVQGRNEVSSVLHAQHESLAAALRLQAAYGRNAIRTGT
DHGNALLSRFDILDHENQDISDHRLEQRGLLHARIDVGGTEVHCFVVHLGLFAGSRGRQIQALTDRIRQSVPDGAPLLIV
GDFNDWGDRLAPMFVQQLGLYEVFSHAPRSHGGDLPRLRDSVRRLGNVLRGVPNSVAVLERNNQLGMGGAYCPLPPPRTF
PAVFPWFRLDRIYQRGFAVRSARVLRGREWARLSDHSPLLAELELP
>SEQF2266_AEE66161.1 putative phospholipase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAQIVRLHWTDGNAIRLLQNGGDFFPALCEAIDAARLSVHMETYIFLLDRTGRQMLECLESAARRGVKVRVVLDGFGSA
GTAETIRLRITQAGGQCRIFRPEPRWLGHLAFSRSRLRRLHRKVAVVDAELAFVGGINIVDDYDDLDPGDDIPAPRFDFA
VAVQGPLVPHILYAQDLLWVRLNWARLRRHPGDWMRLFKPVHADASPAGKLRAALLLRDNLRFRQTFEQAYLYGIQHARR
DILIANAYFFPGHQFRKSLMQAAARGVRVRLLLQGKPEYRMQYFATRALYDRLLRGGIEIYEYMPGYLHAKVAVIDNMAT
VGSSNLDPFSLLLAREANVVVDDQPFAWDLQERLERAIALGGQFIRPLDYQRRGWLRRCVDVAAYTMLRIGVALTGRAGR
Y
>SEQF2266_AEE66162.1 hypothetical protein BPTD_0718 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRRDLLDLLALAAVWGGSFLFMRVAVPEFGPAALMELRVGLAALFLLPLALWRGKPALIARHWKAILVVGTLNSALPFL
LYAYAAQSLGAGFLSVANAVTPVWGAVIGWLWLGDRLPRMRALGLLISLSGIIVLVWDKLDFHDGGTGPAVLAAISAPVF
YGMAANWTKRYLGHVDALTNATGSMVAASLVLAPLAIIHWPEQAVSFEAWRATVLLAIVCTGAAYIVFFRLIARVGPTAA
VSVTFLVPVFGVLWGVWFLDEAVTPRILAGAGVILVGTALALGLVGARRVAAAD
>SEQF2266_AEE66163.1 carboxyvinyl-carboxyphosphonate phosphorylmutase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNSTKRVLRERVAQRNGMLVAGAFNAMSARIVADQGFEAVYLTGAGLTNMHYGAPDLGIIGLRDVADATSRIRDAVELP
LIVDADTGFGNAVNVWHTVRVLERAGADAIQLEDQVFPKRCGHFAGKSVAPLSEMVSKIKAAADARRDEDFLIIARTDAR
AVEGFDAAIERARRFAEAGADILFVEAIVDQDEVGKLPQLLSQPLLVNIVVGGKTPPMPAAQLGRLGYSVVLYANATLQG
AVLGMQRALGALRRDGKLDEDPALLAPFLERQRLVGKPLYDELEERYKDA
>SEQF2266_AEE66164.1 hypothetical protein BPTD_0723 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRKYIDCREFPSEMNCSVALSADSDAELLEAAVQHATTVHKHADTPELRAQLKTMFHEGTPPLAAQAGSRA
>SEQF2266_AEE66165.1 aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDLATINDLHSVVEDDRNAIWHHMLQHDALQATAPWVVVEGKGTRIRDASGKEYLDATAGGFWTVNVGYGRERIANAMR
DQMLKLNYFAQSAGNVPGALFARQLVSKMPGMSRVYFSNSGSEANEKVFKMVRQISARHHAGRKYKILFRERDYHGSSIA
TLAAAGQPERAAQYGPFPDGFVQVPHCLEYRKQWDVANYGERAADAIEEVILREGPETVGLLCLEPITAGGGIIVPPEGY
WRRVQEICRRYDVLLHIDEVVCGLGRTGKWFGYQHFDIEPDFVTLAKGTASGYAAIACTVTHERIFEQFKDEPDDPLSFF
RDVSTFGGCAGSAAAALENLRILEEEGLVEHAAQVGDYLQACLRQLADKHAVIGDVRGKGLLQGVELVSDRAAKTPVSEA
DAKRVVAQCKAQGVLIGVITRALPGLNTTLCLAPPLILTRDEVDELCGAIDRALATVFG
>SEQF2266_AEE66166.1 amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSELWRLSACEIVAGVKSGAFSASEAVRAALDRMEAVNGRINAVVDSDPQAALAAAARVDARIAAGEDPGPLAGVPVTV
KVTHDQAGFATTMGIRKLKDHRAAANSPIVDNFERAGAIPIGRTNMPAFGLRWFTNGRLHGDTYNPFDRSLTPGGSSGGA
SAAVASGIGAIAHGTDIAGSIRYPAYACGVHGLRPTLGRIPNYNASFPERGLGGQLMSVSGPLARTVADIELSFAALAHA
DPRDPWWVPAPLAGPARPRRVALCLRPDGLEIDAAVADALLDAAARLRDAGWEVAELDDIPPMRDAAVAQVTLWLGDEYP
ALLAEAQAEGDPGALAMLRGQPQSAGVTLQSYCSALKARASYLRQWMLFFEDYPLMMLPVSARLTFANDLDTRSAADYDS
VWEAQMPQLGLAFMGLPCMSVATGMCGSAPVGIQLAAGRYREDLLFLAAEDIAARGMPPVPVDPV
>SEQF2266_AEE66167.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIFRKRDLQHRPVVLRIAGLSLVDGQPGAGSAILRDIDVDIRQGETVCLVGESGSGKSMTSLAVMGLLPKGHLRVTGGRI
ELDGQNLLDLGPAALRDLRAKRISMIFQEPMTALNPVMKVGPQIEEVLDSHTALPRREKKQRVLDIMEQVHLPDVARIYE
SYPHQLSGGQRQRIMIAMALVLEPRLLIADEPTTALDVTTQNQVLKLISELQHKHDTAVLFITHDMGVVAEIADRVYVMR
LGEIVESAPVEQLLREPRQDYTRKLLKSVPSLIPRPGRAAPQACATLQVQGLAKRYAMGGFPGRRREVQAAHDVAFSIQP
GRTLGIVGESGSGKSTVARCVMRLIEPSEGAIRVGDADIARLGPRQLKPFRKHLQIVFQDPYRSLNPRRTIGASLIEGPV
NFGQDRQAALAQAAELLELVGLPADALARYPHQFSGGQRQRIAIARAIAMRPDVLVADEAVSALDVSVQAQVLELLDTLQ
RKLDIAILFITHDLRVAAQICDEVMVMRHGRVVEHDTAENVLARPAHAYTRALIEAAPGRDWDFANFRER
>SEQF2266_AEE66168.1 ABC transporter permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTLPQPASALQAVFRVTQLPAWCRFGWPPIAAALVLAVLVLATAAAYLYIPHDPIAINPLMRLKPASADHWLGTDALGR
DVFSRVMAGGQVSLLVGVAAAVISIAAGLCIGLVSGFFRVLDGVVMRITDAVMSVPSILLAIALVALNGPSIWSVIIAIT
VPEVPRVVRLVRSVVLSAREEPYVEAALALGTSMPGILWRHIMPNTLAPLMVQATYVCASAILTEAVLSFLGAGVSTEIP
TWGNIMAEARMYFQIRPGLMLWPGLLLSLCILSINLLGDTARDMLDPRLKRRGE
>SEQF2266_AEE66169.1 ABC transporter permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFGYILRRVLATIPVVVIVAVFVFLLLRLTPGDAAAIIAGDSATPAQIENIRKSLGLTEPLTVQFRTWMTQLASGDLGTS
IISRQPVTKLIGQRVGPTLQIATLTIILSVLIAVPLGVLAAWRHRSWLDYAVMAFSVIGFSIPAFVVGYILMKIFAVDLR
WLPVQGFTSVFQDPQQFLCTAVLPCMTLATVFVALIARMTRASMLDVLGEDYIRTARAKGVKERIVLFRHALGNAAVPIV
TIIGTGFALLIVGVVVTESVYNIPGIGRLTVDAVLARDYPVIQAMILLTSALYVFINLLIDLSYTIFDPRIRY
>SEQF2266_AEE66170.1 ABC transporter periplasmic-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFIARNAADPAVKIRAGARLAAVAAALCGLAATVPAAAQAPKTVTAVMHSGLRVLDPIITTAHITRNHGYMIYDVLVSMD
KDFNVRPQMADFSVSPDGLTYTFTLRENLWFHDGAPVTAADVVASLKRWGERDTGGQHIFDQTESLAATDARTITWKLSK
PFGPMLETLGKQSTVPPFIMPKRVARTPSSEAITDYTGSGPFRFVLDEFSPGVKVAYAKFDKYVPRNEPANWMAGGKVVK
VDRANWVTMPDAQTAVSALSSGEIDYLEQTPTDLLPILESNADVVLEVRDQLGYQALGRMNFKQPPFNDKRIRQAALKAM
SQEPILAAMVGNPKYYQVCGAVLGCGTPLASEAGAGALTGKGDVEGARALLKEAGYDGSPVVILQPTDVPILAAPPLVAA
QQLRAAGFKVDLQPMDWQTLVTRRTNKGAPSQGGWSMFFSYWMVPEVTTPLINATLNARGDEGFFGWAQDPELEAMRGEY
ITAGSPQAQLDVAKRIQARVMDEVTYLPLGQFQTVQGRRANLVDIIASPVPVFWQMDKK
>SEQF2266_AEE66171.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRSIVNSELGVRSPTEEELEDPLFVQAAARTLQVLSAFHRAVRPMSLDEIAEASGVGRSSTQRILNTLRVLGYVERSDG
GRGYVPGIRILDHALDYLRLNTLISRASPVLLDLRRNALERVDLSVFDDLRLVYASRLQSKRETFFATLVGHSVPTFCTA
GGRAILSHLPGAEVDDIIARSDRAPFTDKTITALREIRKKVEQARVSGYAVTIEEVLVGEIGIGVAVLGADGRPVGAIHI
AGSLSEWTPEAFTARFAPLAVEAATAINRLS
>SEQF2266_AEE66172.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVRPRTIDRERLLDIAESIISEAGAVTISFGGLAEAAGLSKASVQSVFGTREAMMEALLERWLRKEQRAYQKKIGPQSSL
RERVRRHVKITGKESSEANSRLAAVLTALVGSDATEGVMAKWYASRVGKFSAETQEERLLRIAFLAAEGAFFMRHVAGFP
MSDRLWRELFHDLLDFVAEPVGGAARSAA
>SEQF2266_AEE66173.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66174.1 carboxynorspermidine decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKTPYYLIDKRALLQNLEVIRRIRERSGAKVLLALKCFATWSVFDLMREYMDGTTSSSLFEVRLGREKFGGETHAYSVA
YAEDDIDDVVACADKIIFNSLSQLERYAPRASAIPRGLRLNPGISVSGYDLANPARPFSRLGETDLDRIAQAMPMIDGFM
VHNNCENRDFTRFDALLTELEHRYGHLLGQINWISLGGGIHFTEPGYALDAFCDRLRRFSEQYGVQVYLEPGEAAITNTA
TLEVTVLDVMRNEKNLAIVDAATEAHMLDLLIYRMSARVQPDQGPHRYVIYGNSCLAGDVFGEFSFESPLQPGSRISIQD
AAGYTMVKKNWFNGVRMPAIAIRELDGEIRLVREFGYQDYVDSLS
>SEQF2266_AEE66175.1 hypothetical protein BPTD_0734 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRNVLIIGAGGVAHVVAHKCAQHNATLGEIHIASRTLDKAQGIVRSVHAMGNLQTNGVVKAHGLNALDIKATAALIRAT
NARIVIQAGTSFLNMAVLAACIETGAAYIDTAIHEDPAKTCEAPPWYANYEWKQAQACADAGVTAILGAGFDPGVVNAYA
KLAVDELFDEVSSIDIIDTNAGSHGKYFATNFDPEINFREFTGSVWSWQEGRWCENRMFEEQRAWDLPVVGRQTTYLTGH
DEIHSLSTHLNVPNIRFWMGFSDHYINVFTVLNSLGLLSEQPVRTAEGQQVVPLKVVKAVLPDPASLARTYKGKTCIGDL
VRGVKDGRPHEVLIYNVCDHEQAYREVGSQAISYTAGVPATAAALLIADGAWDNRKMNNIEQLAPRPWLQLLETMGLPSR
IRDAHGDRALLSPCGKLLKAA
>SEQF2266_AEE66176.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66177.1 hypothetical protein BPTD_0736 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAISTLGPTAPGGLHWCRQRNAVAVSYGYRFNRTFLILMPCPGGQLAWPPP
>SEQF2266_AEE66178.1 hypothetical protein BPTD_0737 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKNYPAYFAATLLALAGLSAQAAPVDYRIDPEHTEVVVTWDHLGFSKPTAHAGGVTGVVRYDAASPADSAVDLRIPVSK
LTSHVPKLDGMLQGVQFFEAARYPDIRFKSTSVTDRGDGRLQIDGILRIKGIDKPVVLQARRNGQGMHPMAQRPAIGFDA
TTTLKRSDFGVDAFAPDVSDEVQLRITIEAVAEAAR
>SEQF2266_AEE66179.1 putative ferric siderophore receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVITFNLFSVKHSMRARPSAATRALHSSSRPRRLIPALLGALACLGTGVQAAPIDVDIPPQNLAQALHQLGRQANLQVLY
SQDLVDGQRSPAVQGRMEPAEALERLLKGRNIRYSIQHNTVTLTPMPLTATLPAISVVGALPDSDTYVATGTTAGTKTDT
PLIEIPQSISVVTAAQIREQNPQTLGDAVRYTPGIVVQEGFNRTDDPFIIRGFDVRTNPGVMFRDGLKIPLPHYSAMSEP
YALERIEVVKGPASVLYGQASPGGIVNVVSKRPTDSPLRELQLSGGSHSNRQLAGDFGGRIDDEGRLTYRLTGLARNADT
MIDHVPDDRYYLAPALTWRISPDTSLTLLASYMKNKTINNAGYPLEGTVKYNPNGRIPRHRFTGEPDWSKWDQEVANVGY
QFAHRFNDTWQFKQNLGYAQSRNRVNHAYWWTWVPGSDFSTAERGAYRRDDDAHGVSIDNQFEATWQSGRFRHNTLFGLD
YTETSFTRKQYAGYNNLAPIDFFDPAYGSDVLLPAKPDTYTNEKRSQLGLYLQDQIKFDDKLVVVLSGRYDNADGSTLNK
LSGVNTRTGDNAFTWRTGLLYLADNGLAPYTSYSTSFQPQAGTTSPARGTTPFDPTKGKQWEAGVKYQPNGSNSFITASV
FELTRTNVPTTDPANPVYSVQEGEVRSRGLELSATANLASGWNLIAAYTYTDAEITKSNSNTLGNTPEAVPRNMASLWSD
YTVPSGALAGLNIGAGVRYMGSTYNNTNAAKVGDYTVFDAALRYDFGARSPSLKGWTADLTVRNLFDKDYVASCTYACFY
GEGRTVLGRVTYKW
>SEQF2266_AEE66180.1 putative inner membrane sensor for iron transport [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVPPSKQDDLLTEQAVQWCVRIHDACCSEQDRAALQAWLEADPRHAREYEAVRDIWTLAQDLPAHEAPAKACAPRRRPY
PAARRALGACALGLACWAAGWWFAVLPSSYHRYASDARVATVTLGDGTEVDMNIDTAMVYRNYRDARRVRLSDGEAYFRV
FHDASHPFVVEAGAGTITVTGTAFNVWKSGDNVVVTLVEGRVDLRASATGKTVSLQPLTQARYAGRGEPVTRAVDGAQSA
AWRHGKLVLDNTTLRDAIMQINRYLPAEARYTAVDPAIAGLRLGGTYDVRNVGELARALPDILPVRTVRKADGSLALVPN
PPR
>SEQF2266_AEE66181.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66182.1 putative DNA methylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPPSRKPAAPRRVRRPAAAPVPRLAPVAGPGRLIDEGLSFYEASLAGKAERYGRGETPHTIHVWWARRPHSAMRALVYA
ALRAPADKRAAARLSELGATPVPQPGLLAEAAAELAGQYGGAPRVLDMFGGGGTIAFEAALLGCDAHSIDVNELAVFLQQ
ANLTYGATLDHGLLKQLAHRHGQAVLQRLARRTETLYPLRGRLASQAEKPIVYLWTYRHACPQCGYAYTLSRRPWLSKKA
GKALAMVATPGPDGDGVDMVSLPDGEPPPSRWAGRGATACPRCSATATPGIADSADHCVAVVTSAGVGKQFALRDDALPA
AGLLREQEETLLQRTGLALPATTLPAWSGIVNPALYGMRGHADLFNPRQRLVTLMLLEELLAEHRTLQAAHGADVARFVS
ASLSGLIDQMVDWNCRLSMWIPQNEQVGRAFCGPGVAMLWDYAEVDPVGTGPGNLHAKLERICAGIDALALLRRPVQVQR
ASAAALPYPDDSFDAIVTDPPYYDNIFYSVLADFFYAWKKPLIDAIENRPTTPPHVPTANSGHDELVASRQRAGGSARAA
HDEYCARLGQALREAARVLKPDGLLAFVYSHASVLGWAALVTAFRAAPFTINSVQPLSIERKARPRALASEAVNTCTTFV
ARRAQAPRPVLARAALQAQFDAILRGGLHRSLLRAGWHEHDAGVALIAQGVALLANCAAVEDADTAALIVDLAGQVSALL
PGFSIKQRASL
>SEQF2266_AEE66183.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKFSDRLKHARRLRQLSQENLAHISGLSQSAVASYENGLRQSSRSIRKLAIALQVNLDWFETGVGPMELEAYPSGPAAW
RPGLMEPGGERAAAPWPFRAVAHARYQALSARDKLLLEQLVRTFIDACHADYGRAPPWPRER
>SEQF2266_AEE66184.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTFSDRLKHARALRSLTQQDLARASGLSQSAVASYENGQRQSSRSVRKLAAALQVNLDWLETGKGSMESLADYSASPAG
GAYYLMEPGSGEAPPRALPPWPFTTIARAQYEALAARDKRLLEQMLRSFVEACHAEYADGRGRARKH
>SEQF2266_AEE66185.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAFSSVMIEARVQLEAGWRQAGWIVDWCEGQHALARLLAMHPPDAVALCGVAGTLSGLVRTTRTSVPAAVVVALLSEGG
LPERIAMMRAGVDLCWPIETQVEEVAAMVDAFARRGTASAAAASAWYLSNAGRVLAGPGGVRLPLTVAEREFMARLLAAP
GHRLARQQLACGFRQRGVQDGAPVSSEVLPSWTANSSHAASYDAAAGLSRNVDVMVSRLRAKAQRMGINLPLLSVRRWGY
LFIADSDAG
>SEQF2266_AEE66186.1 gamma-glutamyl kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAQTSAVSVISAANRLVAKVGSSLVTNEGRGLDRAAVGHWAAQIAALHQQGKQVVLVSSGAIAEGMARLGWRKRPSAMH
ELQAAAAVGQMGLCQAYEAAFAEFGLRTAQILLTHEDLADRHRYLNARSTLFALLRLGVVPIVNENDTVVTDEIRFGDND
TLGALVTNLIEADALIILTDQRGLYEADPRRDPAARFVAHAQAGDAALEAMAGGAGSGVGTGGMLTKILAAKRAAHSGAH
TVIASGRERNVLTRLAQGECIGTELRAVLPVWSARKQWLADHLRLRGRVVLDDGAVHALLHEGKSLLPIGVAEVQGEFER
GDVVACVDMHGRECARGLINYSSADTRRILRQPSSQIARILGSMTDPELMHRDNLVVT
>SEQF2266_AEE66187.1 GTPase ObgE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFVDEATIEVIAGKGGNGVASFRREKFIPKGGPDGGDGGRGGSIYAVADRNINTLIDFRYARLHRAKNGENGRGSDQYG
AAAPDITLRVPVGTVVHDADTGEVLFDLDRHDQKVTLAAGGAGGMGNIHFKSSTNRAPRQWTPGKEGEQRRLRMELKVLA
DVGLLGLPNAGKSTLISRISNARPKIADYPFTTLHPNLGVVRTSPSRSFVVADIPGLIEGASEGAGLGHLFLRHLARTRV
LLHLVDISSPDPEADPIEQAVVDANAIVEELRRYDPELAAKPRWLVLNKLDMVPDAQDAQQRFCAEFGWTGPVFAISGLN
GEGTQDLIWALQDYLDAEKRKDQDAQDQADGTYVFEDPRFDASRGGAAPATPPGGDE
>SEQF2266_AEE66188.1 50S ribosomal protein L27 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQKKGGGSTRNGRDSESKRLGVKVYGGQSILAGSIIVRQRGTRFHPGVNVGVGKDHTLFALANGKVHFSVKGALNKPTV
SVVAAE
>SEQF2266_AEE66189.1 50S ribosomal protein L21 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYAVIKTGGKQYRVATGEKLKVEQIPADIGQEITLDQVLSVGEGDQLKVGTPLVSGAVVKATVLAHGRHDKIKIFKMRRR
KHYQKHQGHRQNYTEIRIEAITA
>SEQF2266_AEE66190.1 hypothetical protein BPTD_0751 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVPHDDLPEDLERALLVGRVWQPAPVDGPCVVAVRGGRLYDLTAVTPTLADLLDRGDRVALARNAAGECLGPAADWLAG
RAAGAMLAPCDLQPVKAAGATFAASLVERIGAEQAGGDAGRAAAVRERIAGLIGTDLSQLRPGSPEAARLKAVLWARGMW
SPYLEVGLGPDAEVFSKAPPMASVGYGSWIGLLPESEWNNPEPEIVLAVDARGQAVGATLGNDVNLHDVEARSALLQNRA
KDNNGSCAMGPFVRLFDASYGLGDVRRADVRLRIEGQEDGFVLDATSHMREISRDPLELVRQTCGGHHQYPDGFMLFLGT
MFSPTQDRAAAGRGFTHRPGDLVRIASPRLGALVNRVGLATAIAPWTFGVRALYANLRRRGL
>SEQF2266_AEE66191.1 octaprenyl-diphosphate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLPELIAPIADDMKAVDTVIRDRLNSDVVLIRTIGDYIIGAGGKRMRPAMVLMVARALGYQGTHHQLLAAVVEFIHTAT
LLHDDVVDESDLRRGRDTANAVFGNAASVLVGDYLYSRSFEMMVEADSMRIMQILSQATTVIAEGEVLQLLNVHDPDVSQ
ERYLQVVRYKTAKLFEAAAQVGAVLAGASPEQETAAAAYGRHVGTAFQLVDDVLDYSGDAHALGKNVGDDLREGKPTLPL
IRVMETGTPEQRELIREAIKTGQADFAAVAQAIQATDALAHARQAAENEAELARQALSAFPVSLYQKSLLEFCAFAVNRD
R
>SEQF2266_AEE66192.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNFRQVETFRAVMLTRSMTQAAKDLHTTQPNVSRVIAQLEARIGLRLFERVAGKLVPTREGEVFFRDVEMTFAGLRSLE
SSAATLRRRGTGHLRISAVPSPALVTVPEAMQLFAERFPDVTVSMHVADSITVCQWTAAGYSDIGVASDIFSSPGIGHHV
ASEALGVCIVPAGHRLAGMPRALAPADLAGERFLSLSPNDAMRKEIDKVFAAAICHMVGLGLGVSIANPDVADGFRSLDI
AIKPFAPDIRFSTYLVYPSSSPLSLLAQTFCECYEISAGRKRARRQAG
>SEQF2266_AEE66193.1 putative hydantoin utilization protein A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLRIGVDIGGSFADFAVLDESTRTIQTLKVFSRPDAPGSEVLAGIEQLKARHGLDPAQVSYFTHGTTVGVNAVVQRRGL
KLALITTRNFEDVLDIGRLKIPDMYHLMSKRPAPLISRDRVFGVDERLGADGSVVAPVDEASVLAAAEALREAGCEGVVV
SLLHAYRNPAHERQVKAILQRALPGMFVSCSHEVWPIIREYERTLTATIGGYVQPRVSHYLESLQGALRESGVPVDLKVT
KSNGGVMSAEHGKANCVQMILSGTASGVIGAAYIADLCHIPNCMSLDIGGTTADIALIVDGKPQFATGEYIGDFQIHIPS
VSVSSVGDGGGSIAWVDELGVLKVGHQSAGSTPGPVCYGKGGTQPTITDAFAVMGVIGSQQLGYNAVQVDVEAARRSIEP
LAEKLGTDVLRTAEAIVNVSVSSMYAGVSRVISRFGIDPRVFSLMPFGGAGPMLACYLAKALKVQKLLVPTTPGVLSALG
GLIADVKNDFVRTTYCDLNAATVGSLAQAASELEAQARAWLVAEVGTDADAEIDISADMRYRGQSFEIDTPVERAWLEAG
AIDSLSQAFHKEHERLYGHGDASAGVQVVAMRLVITSRTPKPELNHIAQGAGVPPRESTLRIWLEGQYRDVPLYRCEKLL
AGQAFSGPAIVAQDDCTTCVLPGFDARVDTYGNLELTALALN
>SEQF2266_AEE66194.1 hydantoin utilization protein B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNFDKTVLQIFANYCVAAAESMAHTLMRTAHSAFVKETEDFSCTIMTPRGQTFASPKTLGATWYPGLDFSGAIDMIDGYE
PGDICMTNDAYSGYVATHTPDIMMWKPVYYQGEMVCFVGGHIHNTDMGGAVPASLSRTLTEVHQEGIRFPPTKIVRRGVL
NEELMRLMELNVRSPDQNRGDLQAQTAMLMTGERRIVEIIERFGLQAFKEGMAAMLDYSEQQARAIVRAMPDGEYFFAEY
ANEDSLNGKPLRVAITLRIRGDELEFDFTGSDPQLTSSLNMPTGGKERHVLALVGLNYVLYSLNPEILLNAGMLRVARCI
LPEGSVVNPLAPAAVGMRSLTCKVVQYATMGVFSQVVPDRLPASPAGGMSIVNVKTTDRDGKTIIAAIEPVGGGAGGDPY
SDGADASGAIVAFLRNTPVEINETEVPIRITRYGMVPDSGGPGRYRGGLGTCMEFQVYTPNSAVTARNRDRSRFASWGVL
GGKAGTVSRFLRNPGTAHEEDLGVHDFIHCQPGDVIRLEGCGGGGYGSPWERDPARVLHDVRCGYVSVENARGQYGVVIE
GGEVSRDATARLRAELAGRDPAVAHYDHGAGRDAFEAVWTLARYERMTHHLAGVAPIWRHFLKIKIFDALEQRLGGNVAD
TRPEIVDEIFAQLLKACPQLQAASA
>SEQF2266_AEE66195.1 putative amino acid deaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQQLKQALLRIDTPHTPPAEVDVAIIGAGAAGVATAHELTRLGVRVAVIEKGWVAAEQSSRNWGWCRTLGRDIRELELAR
LSVDLWRSVQADTGVDAGFRETGVVFVTDDPSELRTWERWQQAAAARGVPARMLSAREANATHAWGKTPWIGGIRTERDG
YAEPARAIPLLARHAMDNGAQVIQQCAVNELLVEGGRVAGVQTECGLVRASQVVVAGGVWSSLFCRKHKLPLPILQVHSS
ASRSRQFDTGGAAPARATHFSFRHREDGGLTLAKSGRGTMHVVPDLLRYGMKFRSLYRARKANVRLSIGRQFFAQCWDEF
RYFHLDRPPYARHRVLDPGPDMALVRSAYEDAGAVFPGMGSDLIDQAWGGVIDNTPDGIPVISDVARMPGLYLCTGFSGH
GFSSSLGAGRCLAQWIARGRSDLSLDAFSYARLVDGRRLQPSILY
>SEQF2266_AEE66196.1 succinate-semialdehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLSVGNAALLPGRNLIGSEWREAALGARFAVADPATGKVIAHVPDSGARDAGAAVTAAHQAFADWRRTPAKVRAQIIKR
WNALLHENAEDLARLISSEQGKPLAEARGEVSYAASYVEWFAEEATRADGDLIPSPAQGRRMFALREPVGVVAAITPWNF
PAAMIARKIAPALAAGCTVVCKPAEDTPLTSLALTALAQQAGVPPGVLNIVTASRGRAAEVADAWLDDPRVRKITFTGST
PVGKHLARRSADTLKRVSLELGGNAPFIVFDDADLDAAVEGLMVSKFRNGGQTCVCPNRIFVQAGVHDAFVRKLAARVEG
LVVGPASDPASQIGPMINARAVEKIEHHVADALERGARLAVGGKRIHSARCAGDHYYAPTVLTGVDETMACFREETFGPV
APITVFASEAEVVAAANATAFGLAAYFYSTDVRRIWRLADALETGIVGVNEGALAAEAAPFGGVKDSGYGREGSRHGLAE
YMQIKYVCQGQLD
>SEQF2266_AEE66197.1 cyclolysin-activating lysine-acyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPSAQAPSLLNPTDDFAALGNIAWLWMNSPMHRDWPVHLLARNTLAPIQLGQYILLRCNDVPVAYCSWALMDADTELSY
VMAPSSLGGNAWNCGDRLWIIDWIAPFSRDDNRALRRALAERHPDSVGRSLRVRRGGDTARVKEYRGRALDAAAARAQLD
RYHAELIAGLRASNGGYAPRGRGTA
>SEQF2266_AEE66198.1 bifunctional hemolysin-adenylate cyclase precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQQSHQAGYANAADRESGIPAAVLDGIKAVAKEKNATLMFRLVNPHSTSLIAEGVATKGLGVHAKSSDWGLQAGYIPVNP
NLSKLFGRAPEVIARADNDVNSSLAHGHTAVDLTLSKERLDYLRQAGLVTGMADGVVASNHAGYEQFEFRVKETSDGRYA
VQYRRKGGDDFEAVKVIGNAAGIPLTADIDMFAIMPHLSNFRDSARSSVTSGDSVTDYLARTRRAASEATGGLDRERIDL
LWKIARAGARSAVGTEARRQFRYDGDMNIGVITDFELEVRNALNRRAHAVGAQDVVQHGTEQNNPFPEADEKIFVVSATG
ESQMLTRGQLKEYIGQQRGEGYVFYENRAYGVAGKSLFDDGLGAAPGVPSGRSKFSPDVLETVPASPGLRRPSLGAVERQ
DSGYDSLDGVGSRSFSLGEVSDMAAVEAAELEMTRQVLHAGARQDDAEPGVSGASAHWGQRALQGAQAVAAAQRLVHAIA
LMTQFGRAGSTNTPQEAASLSAAVFGLGEASSAVAETVSGFFRGSSRWAGGFGVAGGAMALGGGIAAAVGAGMSLTDDAP
AGQKAAAGAEIALQLTGGTVELASSIALALAAARGVTSGLQVAGASAGAAAGALAAALSPMEIYGLVQQSHYADQLDKLA
QESSAYGYEGDALLAQLYRDKTAAEGAVAGVSAVLSTVGAAVSIAAAASVVGAPVAVVTSLLTGALNGILRGVQQPIIEK
LANDYARKIDELGGPQAYFEKNLQARHEQLANSDGLRKMLADLQAGWNASSVIGVQTTEISKSALELAAITGNADNLKSV
DVFVDRFVQGERVAGQPVVLDVAAGGIDIASRKGERPALTFITPLAAPGEEQRRRTKTGKSEFTTFVEIVGKQDRWRIRD
GAADTTIDLAKVVSQLVDANGVLKHSIKLDVIGGDGDDVVLANASRIHYDGGAGTNTVSYAALGRQDSITVSADGERFNV
RKQLNNANVYREGVATQTTAYGKRTENVQYRHVELARVGQLVEVDTLEHVQHIIGGAGNDSITGNAHDNFLAGGSGDDRL
DGGAGNDTLVGGEGQNTVIGGAGDDVFLQDLGVWSNQLDGGAGVDTVKYNVHQPSEERLERMGDTGIHADLQKGTVEKWP
ALNLFSVDHVKNIENLHGSRLNDRIAGDDQDNELWGHDGNDTIRGRGGDDILRGGLGLDTLYGEDGNDIFLQDDETVSDD
IDGGAGLDTVDYSAMIHPGRIVAPHEYGFGIEADLSREWVRKASALGVDYYDNVRNVENVIGTSMKDVLIGDAQANTLMG
QGGDDTVRGGDGDDLLFGGDGNDMLYGDAGNDTLYGGLGDDTLEGGAGNDWFGQTQAREHDVLRGGDGVDTVDYSQTGAH
AGIAAGRIGLGILADLGAGRVDKLGEAGSSAYDTVSGIENVVGTELADRITGDAQANVLRGAGGADVLAGGEGDDVLLGG
DGDDQLSGDAGRDRLYGEAGDDWFFQDAANAGNLLDGGDGRDTVDFSGPGRGLDAGAKGVFLSLGKGFASLMDEPETSNV
LRNIENAVGSARDDVLIGDAGANVLNGLAGNDVLSGGAGDDVLLGDEGSDLLSGDAGNDDLFGGQGDDTYLFGVGYGHDT
IYESGGGHDTIRINAGADQLWFARQGNDLEIRILGTDDALTVHDWYRDADHRVEIIHAANQAVDQAGIEKLVEAMAQYPD
PGAAAAAPPAARVPDTLMQSLAVNWR
>SEQF2266_AEE66199.1 cyclolysin secretion ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSPVAQCASVPDSGLLCLVMLARYHGLAADPEQLRHEFAEQAFCSETIQLAARRVGLKVRRHRPAPARLPRAPLPAIAL
DRQGGYFVLARFEPGADQAVLIQRPGQAPARLGQAEFEALWAGELLLCACAASPTQALARFDFSWFIPALVKHRHLIGEV
LLISLVLQFIALLTPLFFQVVMDKVLVNNAMETLNVIAVGFLAAILFEALLTGIRTYLFAHTSSKLDVELGARLYAHLLR
LPLAYFQARRVGDSVARVRELEHIRAFLTGNAVTVLLDVVFSVVFIAVMFFYSVKLTLVVLAALPCYFLLSLVLTPVLRR
RLDVKFNRGAENQAFLVETVSGIDTVKSLAVEPQWQRNWDRQLAGYVAAGLSVANVAMLANTGVTLISRLVALGVLWVGA
TEVVAQRMTVGELVAFNMLSGHVTQPVIRLAQLWNDFQQTGVSMQRLGDILNCRTEVAGDKAQLPALRGSIELDRVSFRY
RPDAADALRNVSLRIAPGEVVGVVGRSGSGKSTLTRLIQRMFVADRGRVLIDGHDIGIVDSASLRRQLGVVLQESTLFNR
SVRDNIALTRPGASMHEVVAAARLAGAHEFICQLPEGYDTMLGENGVGLSGGQRQRIGIARALIHRPRVLILDEATSALD
YESEHIIQRNMRDICDGRTVIIIAHRLSAVRCADRIVVMEGGEVAECGSHETLLAAGGLYARLQALQAGEAG
>SEQF2266_AEE66200.1 cyclolysin secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRALRELAARHGRVLAASWRQRHRRPAGWFDPVETEFLPSALSLQERPISPTARWLARILMALAAGALVWSVVGKTEIV
VHAAGKVVPVGQSKIIAASETGRVARVLVADNSRVAAGDVLLRLDAGVTEAEERKWRVQAAQARQDEARSRAMIRALDTG
RAPVLAELPADPGMMAAQSYLDSQYADYQAQLRSIEAAIATYRRELGLVTQIAHAHRGLRRDGDVSQQAYLEKEQARMTL
EGRLRQSEAQRAALQTQTRRQAFETLVLARKLAAQAEQEIARTSAQRSRLVLTAPVDGVVQQLVALTEGTAVAATQPLMM
VVPSGAGIQVQAQLDSKDIGFVRAGAPATVKVGAYDYTKYGTLEGKVLYVSPDTVVDDRQQHSYRVTIALAHPALEVDGK
PRLLKEGMAVQADIRTGSRRLIEYLLSPVARHAGESLGER
>SEQF2266_AEE66201.1 cyclolysin secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAVQVRRRGRALALALWAGFALSVGGGVRARDGLATPPAFEGQAAPAVSWPCPPPADRLDDLALLEAIDLALCHSPALR
QGWARIKARSAEVGLARAPYYPSVALSAGRSAQRRSTGLGEDGVRNNVMAVTLAWRLFDSGARSAALRAAQAQLDEAAQA
YGAVLQDKLAEVVGAYYEAATARQALHTAVEDTEIARRSASIAARRARAGLDSHGDVLHAQAALERARLAQAQAEGAQAR
ALAGLAQVLGVDPATPIVLAPGPLAPQRIEDRELAQWLRDARQRHPAIKAAQAGLAAATAQVDVARATDMPTVDLSLGHY
RNSSENVSVFAGSSRSVSASLNLRIPLFDGFARRHRIQGARAEVQRQEALLDQARLATGAAVARAYADLRAARASHEASL
RWLKAARAAYESDLRRYEAGVGGVAELLRAQSDWLSARQRHVLYAAQLRTRALALLAAAGELGRSTIDGDPPKE
>SEQF2266_AEE66202.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMVMDLRWFQDFLTLAECGQFTTAAELRHVSQSAFSRRIQSLETWVGTPLIDRGCFPTRLTAAGEQFRSAAAEIVRKVID
ARGEAGATGHDSMVLRVAMPHCLATSRFPAWCARWQQVGGAASLRLHVGNVHDSVEWLAAGVVDLLVCFRHAVEDIQLDA
QSYMRAGVEADVLRLYRPAGMALDEAELACEAPQARYPYVSYAQGAYFRRLIELSCGPLLQRAVLQRVCETDFVDGARDL
VRAGVGLAWLPDSSARAAVEHGEIVAVADRRCAIPMEICMYARRHGPAQEAVERVFDQFGRG
>SEQF2266_AEE66203.1 extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRLLNALTAALAIGAAAAGQAHAADLDGTLKKISDTGVITIGHRETSIPFSYYDANQKPVGYSIDICTRIVDAVKTRIK
RDDIQVKYLPVTSATRIPLMGNGTIDLECASTSNTLDCQKQVAFSVTTFVTGNRFISLKSANLKTIDDLKGKTVASTSGT
ANIRQANEINEARSLDMKVVPVKEHAEGFLMVETGRAAAFIMDDILLYGLAANAKEPDRYQVSGDSLSIEPYAIMLRRDD
PQFKALVDDTIKSLYASGDFEALYKRWYQSPLPPKGINLNVAMSEVLKRVVATPTDSGDPVAYK
>SEQF2266_AEE66204.1 glutamate/aspartate transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSFDYQAIIDALPYLFLTGLRFSLLLTLSSAAGGVVLGALLAIARLYGRRWVAWPAAIYVNLFRSLPLVLVIFLIYFIL
PYLLQWITQAERPIVLGATGSAFVTFILFEAAYFSEIIRAGIGSVGPGQYAAGSALGLTHGQVLRKVILPQAVRNMLPVL
LTQVIVIFQETALVYVLSLPDFLGAATKIAQRDNRLVEMYVLVAVVFFVLSFTASRGVRALRARLGA
>SEQF2266_AEE66205.1 glutamate/aspartate transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELLSMIEIERLGKCYGDLPVLKDCSLAVARGEVVVVCGPSGSGKSTLIKCVNRLEPFESGRIVVDGTDVGAPGTDLPAL
RARVGMVFQHFELFPHLSVLENVCLGQMSVLGRSRAQARAKADALLERVGVAAHRDKHPGQLSGGQQQRVAIARALAMDP
VVMLFDEPTSALDPEMIGEVLDVMTGLARDGMTMMVVTHEMGFARRVADRIVFMEAGEIIDDVASAEFFGSAASPRSREF
LSRIISH
>SEQF2266_AEE66206.1 aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSLFYINGSFVPAEQARVPAMDRGFLFGDGVYEVMAVIDGMLLEFERHAARLARSLGEIGIANPLPRERLLAVCRELVS
RAGLREGSVYVQVTRGADARRDFAFPSGVEPTVMLFTSEKDLRVNPLAQSGVQVATVPDLRWQRRDIKSVSLLAQVLAKQ
AAQARGAFEAVMVDAQGVVTEGSSSSVLLVNAAGEIVVRPLSQDILPGCTRAAVLELARERDMAMVERPFTLDECRQARE
VILTSALQFVLPVIAVDGEPVADGRPGPVCAALRELYLRHTLATAL
>SEQF2266_AEE66207.1 hypothetical protein BPTD_0771 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLIVAARFDTFPDVENAAQRLFSEGFTKQDVHVFYVNSAGEHSRYAYGGDRRSDPDSGRADMGAILGAALFGLAFAIAG
GFIVAGLNESTIAMLAAAGVGAYIGSLFGALWVTGHLARKRGEAAPVDHPEVRPAGLLLALHTDPTRETLACQVLRAANG
HDVEHAEGVWRDNRWQDFDPLKPPQREP
>SEQF2266_AEE66208.1 hypothetical protein BPTD_0772 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSINKYLAATLASLGLAAGAAATDFPKNEVRLVVNYGAGGNTDVASRALAKGMEKPLGKPVIVENKPGALGTIGPGYVA
RQAPDGYTVGVVTYSTQAIMPHLMKLPYTMDDFDFVAGVGRYRYGITVRADSPYKTLQDLVEAAKKPNGMFFGAPSSPNN
LALLELGRLTGGKFEQVSYKSGSETVTALLGGQVDVIVQNPSDVLPHIRDGKLRMIASASPMRWPELPEVPTIQESGWPV
QIDSWIGLATPRGAPADVLAKLQQAALAAVADPVTRDSFEKLGVDPASLKGSEYAELLKQGHEEMGRMIRDANLPRIN
>SEQF2266_AEE66209.1 acetoacetyl-CoA reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEPRIAVVTGAGRGIGLASARALLAAGNHVVTIDRGAIDTQALFGAQHDRVTAASADVQDLPALQALKARVEAELGPVS
ILVNNAGVSPKRPDGRSSGILEVSEEEWAQVLGINLTCVMRLCQLFLPAMRDQGYGRIVNVASLAGRARSIVAGPSYMAS
KAGVIGLTRAIASEMGPYGITANCVAPGRILTEMAQQAGPEVNQRYAEQIPVRRLGTPEEVGTSIAFLCGPDAGFVNGAI
IDINGGFYMP
>SEQF2266_AEE66210.1 acetolactate synthase catalytic subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTLPKPLSAPGFTLDGTVAHAIVRALARHGVDTLFGQSLPSLLHLAAEQAGMRQVAYRTENAGGYMADAYARVSGKPAI
VTAQNGPAATLLVAPLAEAMKVSVPVIALVQDVNRDQTDRNAFQELDHIALFQPVTKWVRRVTEASRIEDYVDQAFAAAC
SGRPGPVALLLPADLLAAAAPAPALPRNNSLGHFPLDRSVAAPQAIARAASLLAQAQRPVVVAGGGVHISDASAAMAALQ
ETAHLPVATTVMGKGAVDERHPLSIGVVGSNMGPNGPTRFQRRLIAEADVVLLVGNRTNQNGTDSWQLYPKNAQYIHIDV
DGLEVGRNYEALRLVGDARLTLEALTAALAGQDLAARRQARAGVEQAIALGHEKHLEDSAAVRLSDASPIRPERIMHELQ
QQLDEQSIVVADASYSSIWITHFLTALRPGMRFLTPRGLAGLGWGFPMAMGAKLANPAAEVYALVGDGGFGHVWSELETA
ARMGVKVTLIVINNGILGFQKHAENVKFGAHTSAVAFAPVNHTAIARACGCTGIRVEDPAQLADALAQARAASGSALIEV
ICDENAFPPITFFTPDAGVQA
>SEQF2266_AEE66211.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATLANRPLFAPIPPSMNMPLAPMARENIAAVIYRQLKQLLMMGELKPGEILTLRMLTERLGVSQTPVREALLQLVSERA
LAMSRGKSVSVPAPTREKLQELRDIRLTLEVLATERATPRISDAEIKTLERLHREMVRYKNSEQREGVLKTNYEFHFTLY
NASGMPDLVAIIEGLWAQTGPSLTYLYQKPFAHLYDAHPHLPLIEALRRHDVEAAVAAIRRDVAGYGAALMERLPAEAGQ
PAGG
>SEQF2266_AEE66212.1 hypothetical protein BPTD_0776 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLHPVVCLDRSRRGPGDFPLLSMSAVAMRRGVSALLGVAGTLALAAPAWAQARQEAASAAHPTWMAAAGNWQVLEGGPG
VARVKQRTTGVYAGSEHALGAGLRLGGVLGLTRSTARFDDLYAKGHVNSYSLALYGARTVAAGAGDFNAVAGAAYTWHDM
DTRRHFHWAGTSQTLTADTHGSTFQAFGELGYRWRASARVQIEPFAALAWRDVRTRAFVESGGWAAISAGPSRLTQTTTT
LGVRGEAGYMLGPAPGKLRLTLGWRRAFGDVDPQATLVLDGGNALAATGAPIARDAALAGLGAELALSRSAAIGLAYIGQ
YSGGNREHTGSLSLRWLFGA
>SEQF2266_AEE66213.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYKTTTEPAEKGRRAFSQVLEKLREMVISYEIKPGERLNEVALAERLGVSRTPVREALHFLARDGFLAEAGRGYVRRPLN
LKEMIDLYETREVLEVACLQLAAGRATPQRLDALEAFLAESRAKSPDLPVTELVSLDETFHHMLAEMSGNHELQRILHNV
NERIRFIRWINMERIGRDKTQAEHAAILAALRAGDIATAQQNLRSHISKRTEQIKECIAQGLAHIYLDDDETSPGA
>SEQF2266_AEE66214.1 Zinc-binding dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAVVIHGHGGPEVLQYDTAFPDPKAGEGDVILRVKATSINYHDVFTRRGMPGIKLDFPVIMGLDVAGEIVEVGPGVQGW
KAGDRVLVDPINRAEGGLMGETVHGGLAELCKAREHQLIRIPDGVSYEQAAALPVAFGTAYRMMHTIGQVQAGEKVLVLG
ASGGVGVGCVMLAKIAGAQVIACASSEAKMQRLRELGADHVINYADTDFAKAIYELYGKPHRRKFDGGVDVAVNFTGGDT
WVKSMRCLRRGGRLLTCGATAGYDPQTDLRFIWTFELNIRGSNGWMREDLDALLGLVQSGKMQVPIDRVLSLQDAGEALR
LIEDREVMGKVVVTP
>SEQF2266_AEE66215.1 putative acetyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAAPANLGALFSPARDPAAIALIDLGGESGPREYTYAELDAQADGVARGLPAGARAAILSANRMEFLAAYLGIMRAGLI
AVPVNYRLPPDSIDFILRDSGAALVFCDGPRRDAYTVALPSVEFGAGGAGGYARFLDPGPCEAARPADDQPALFLYTSGS
TGRPKGVKISHAGYLWTVRQRTASTDYGGHCFLVAAPLYHMNALNTIKLALAGQGRLVLMPQFSPAGYLDAIERYRCTWL
TAIPTMIALLARETGALAGADLASVAMVRLGSEPLTQRIADSARAMFPRAAFGNGYGATETGALVFGPHPQGLAQPVLSV
GYPHPAVQLRLADGADLDAATGVLQVRSPALMLGYHGLPEQTAAAMTHDGFYITGDVMRRDEHGFHYFIGRADDMFVCGG
ENIYPGEVEKMLERHPAIAQACIVPLADPLKGMKPVALVVSRPDATLSEQEVKDYALAHGPAYQHPRAVRFVDEMPISST
GKVNRKAALLAAELIAAASPLTQGGHALRR
>SEQF2266_AEE66216.1 hypothetical protein BPTD_0780 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSKENAMEFHQCYALDYHRARDKFRAAAAAAGASLTQYLHEGRTGPDGRPLHTDVARFGRADAPRRLLAISGTHGLEGF
FGSAAQIGWMLGDGPASLDPDVAVIMVHAINPWGFAHLSRTTENNVDLNRNFIDHGQPHPANPDYAILHPQLLREDWSSA
AVAAAQQAMEDFTARHGEDRLYDTLARGQYSHPDGLNYGGTAREWSNLTLERIVRDHLAGARKVALIDWHTGIGGYGEPF
FLCFNEEGGPLHELAARWWGRDRIVGQRPHGKARPNYQGLLFHGVQALLGDVPMCGAVIEFGTRGWHMRRLLRLDLWLKF
KADPASERYAMLRADLLDSFCPYDQVWREGTLRHAQEITRQAVAGLAAWTET
>SEQF2266_AEE66217.1 hypothetical protein BPTD_0781 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKSVKSFLYPLITGVVLVILWFASIRIFSVPNYLLPTPEAVLNTLRIGYVEGQYWPHFLFTLQSTVYGYLIGCGMALVV
GTVLAESETFEQFIYPYIIALQSTPKVAIAPLLLVWFGFGMASKVVMVALMSFFPMFINTVVGIRQANPAMLDLMKAFKA
SRSHVFFHVKLPAASGHIFAGLQISVVLSLIGAVVSEFISSSQGLGYLIQSASVNMDVATMFACLFSLVVIGLTGTNLIR
FLHRKLVFWEQSTTATVQPE
>SEQF2266_AEE66218.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSLNLSMIEGGRPASRAAAATLDAVAGAGDGAALLTANNLSVVYRTSKGPITAVDNLSLQLGAGEFVSVLGPSGCGKST
LIKVFSGLLKPSGGKALLNGTPIDEPRGDVGIVFQQPTLLPWKTVLDNVLVPIRALGMNVAEGRAKAMELLRLVGLEKFA
SNYPSELSGGMQQRVGIARGLIHDPALLLMDEPFSALDTMTRDRMSIELQRIWMATRKSALFITHSIAEAVFLSDRIVVM
SARPGRIIREVTVNLPRPRTLATLTDPEFTRLCGELRELFDQLVQFD
>SEQF2266_AEE66219.1 hypothetical protein BPTD_0783 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGIEHLKRHARRGILAGAAAMALTAAGGAANAAEKVTFAYGINISLSNAPTLMAIGMGYFKEAGLDVQATFFQGAAVML
PQVTQKHITFGWITPDPLVISRQPGRDALPVKMFYNGIYLSPFEVVVTKSSPARSLADLKGKKIGVGAMSWGNLAVTKAM
MKKLGLELQRDYEFVPVGVGATAFRALADDKVQALNLFDTFHVQMEQMGADLRRLPMDQSYRELFSSGWIAHQDTLRERP
ELVVAFARAAAKGVVACNANPQACVQNFWKLYPATKPADGTEEKKLADAVQILKVRLATMLPEQGPQQMGYYTEQSWHDY
VDVLHEGGQLSTKDVDVKPLYTNQFVKDINDFDAAAVVSAAKQLK
>SEQF2266_AEE66220.1 putative dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRTEPDQPMGAAPAGLDHVGLYAHDMDAAAAMYQRLGFTLTPLSQHSGTHAVTREVVKAGIANRCAMLGHGYIELVAVV
DPALDLRGIPEGLARYAGMHIVAFDTPDPGQRIAALREAGFAAEPGVLQRYIDTADGPRLARFSQVRTPRQAMPEGLILT
LRHETPELLWQARYMDHPNGARALAAAIVAVEDVDAAAARYARYLGVPAERRGGEAWFTLRSGRLALVDQAALAARLPGS
AAPTLPFPAALAVEVDNLSRTAAVLDDNQVAYRRAGGQLTVAARDAGGAAVIFCANAEAAFAGAPEEP
>SEQF2266_AEE66221.1 putative acetolactate synthase large subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQLNGAEAMVRMLQLNGVKHIFGLCGDTSLPFCDALQRLDHGMEHILTRDERSAAYMADAYARVTGKVGVCEGPSGGGA
TYLLPGLVEANESSVAVLGITSDVSVGSRGKYPLTELDQEALYRPLTKWNTTIDRADQIPGAVRAAFRAMTTGRPGTAHL
CLPYDVQKHEVDPADVWAQPGHDRFPAMRFAPDPAAIEQAAARLVGARAPVILCGGGVVISGACAALEELAVTLNAPVCT
TVSGQGSLADTHPLNAGVVGSNGGILATRAVLADADVVLLIGCRAGSTSTEHWRFPSREVPILHIDSDPMVIAANYRTDV
AMVGDALLALQALNREVHARIDARPTDAVDGKAVAAKAKGAKLAALQPLAASLDAPIRPERVVDALNRLLPAESVVVADP
GTPCPYFSAYFEASKPGRHFITNRAHGALGFSMAAGMGAAIGRPSAKVVSVMGDGSFGFTVGEMETIVRRKVPLLMIVLS
NSVYGWIKASQKAGYQERYFSVDFNRTDHARVAEAYGVKAWRVEDPRELDGVLKAAIEYGGPALVDIIVQPLQEAAAPVS
QWMG
>SEQF2266_AEE66222.1 putative mechanosensitive channel protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIPGSRIAWLLWPTVLCSLSVVVYVFHAYLFQRYLPGSNPESFRRFSAAAAFYAFAWLLARMAAAALTRKAKKKRKTPRL
LRELVSATLFAIATVATIGVFLGQSAGGILASSGLIIAILGFAIRNVLADVLSGIAIGVEAPYRIGDWVGFDATIRGRVT
EIGWRTTRILTPNDTYMILPNSQISRQMLTNYSAPRKQYQGELEIVLSHDISISDGKQLLFDAALSTSPAESLAPGQKPR
VRATAYTAEGVTYKIKYWVPQFSDSTDCRDAILVAIDDAIRSQGLALPVATPPRPQAIALRQPDTPDNPGA
>SEQF2266_AEE66223.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66224.1 acetolactate synthase large subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELNGADIVVRCLAEEGVEHVFGYPGGAVLYIYDAIFKQDKFQHILVRHEQAAVHAADAYSRASQKVGVCLVTSGPGVTN
AVTGIATAYMDSIPMVIISGQVPTAAIGEDAFQECDTVGITRPCVKHNFLVRDVKDLAETMRRAFFIARTGRPGPVLVDI
PKDITVAQCKYAPPKGEISMRSYAPVNKGHQGQIKKAVQMLLHAERPMIYTGGGVILSDAAEALRHLVDQTGAPCTNTLM
GLGAMPATDHRFLGMPGMHGTYEANMAMQHCDVLLAIGARFDDRVIGNPRHFAQNARKIIHIDIDPSSISKRVRVDVPIV
GNVKDVLADLSAQYDLARADAKPAPIEKWWQQIEAWRGKECLKYAGSDEVIKPQFVVEKLWEVTGGDAFVTSDVGQHQMW
AAQYYKFNKPRRWINSGGLGTMGVGLPYAMGVQMANPGADIAVITGEASIQMNIQELSTCHQYHLTPKIICLNNRFLGMV
RQWQQIDYGSRYSESYMDSLPDFVKVAEAYGHVGLRIERPADVEPALREAFKKHKDRLVFLDFITDRTENVWPMVKAGRG
LTEMLLGSEDL
>SEQF2266_AEE66225.1 acetolactate synthase 3 regulatory subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKHVISVLMENEPGALSRVVGLFSARGYNIETLTVAPTEDATLSRLTVVTVGSDEVIEQITKHLNRLVDVVKVVDLTEGA
HIERELMLIKVRAVGKEREEMKRMADIFRGRIIDVTDKSYTIELTGVQEKIQAFIEALDRSAILETVRTGVSGIGRGERI
LKI
>SEQF2266_AEE66226.1 ketol-acid reductoisomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKVFYDKDCDLSLVKGKTVAIIGYGSQGHAHALNLHDSGVKVVVGLRKGGASWNKAANAGLEVAEVAEAVKRADIVMMLL
PDENIAAVYRDEVHANIKAGAALAFAHGFNVHYGQVVPREDIDVIMAAPKAPGHTVRSTYSQGGGVPHLIAVYQDKSGSA
RDVALSYASANGGGRAGIIETNFREETETDLFGEQAVLCGGTVELIKAGFDTLVEAGYAPEMAYFECLHELKLIVDLIYE
GGIANMNYSISNNAEFGEYETGPKVVTDATRQAMRECLTAIQTGEYAKKFILENAAGAPTLTSRRRINAESQIEQVGGKL
RAMMPWIAANKLVDKAKN
>SEQF2266_AEE66227.1 putative CDP-diacylglycerol--serine O-phosphatidyltransferase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNFSMRDPENRHRSIYLLPNAFTTAALFAGFYAVVQAMNDRFETAAIAIFVAMVLDGMDGRVARLTNTQSAFGEQYDSL
SDMTSFGVAPALVIYEWILQDLGRWGWLAAFVYVAGAALRLARFNTNIAVVDKRFFQGLPSPAAAALVAGFVWLAIDNKL
PIHDSIMAWVAFVLTMYAGVAMVSNASFFSGKNFALGRSVPFWGILLVVAVFVFVSSDPPVVLFGLFVLYGLSGWVVMAW
RWNRARRLQQERRSGHHSP
>SEQF2266_AEE66228.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPIRRPIGRALRLAGAGMLLAALAACANLNQVPPGTPLADVQAQFGAPNFACDLPNGGQRVIWTQQPYGQFAWGANVGP
DGRVDRVVEVLTDEHFKVLGTGTWTADQVRCEFGPPAEIKQVGLPSVRQVVWSYRYRESRVWNSLMYVYMGREGDRVTRF
HPGPDPMYDEDWRWH
>SEQF2266_AEE66229.1 30S ribosomal protein S15 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVADIKKSEIVAQFQRAQGDTGSPEVQVALLTARINELTGHFKEHMKDHHSRRGLLRMVSRRRKLLDYLKGRNPDSYRA
LIEKLGLRK
>SEQF2266_AEE66230.1 polynucleotide phosphorylase/polyadenylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFNKVTKTFQYGQHSVVLETGEMARQASGAVLVSVEDTVVLATVVAAKKAKAGQDFFPLTVDYIEKTYAAGRIPGGFFKR
EGKPSEKETLTSRLIDRPLRPLFPEGFYNDVQVVIHTLSVNPDIDPDIPAMIGASAALAISGIPFNGPIGAARVGYVDGQ
YVLNPTATQLKSSKMDLVVAGTENAVLMVESEAKQLSEEIMLGGVVFGHEQMQAAINAIHDLVRDAGKPDWDWQPAPKNE
ALIAAVSAAAQEGLNAAYQIREKQARTTKLREVYAAVQAAMAEQAAQAGQPAPDSVGVDNILFDLEARIVRSQILNGEPR
IDGRDTRTVRPISIRLGVLPRAHGSALFTRGETQALVVATLGTKQDEQIIDALMGEYRDRFMLHYNMPPFATGETGRIGV
PKRREIGHGRLAKRALLPLLPAPEDFQYTIRLVSEITESNGSSSMASVCGGSLAMMDAGVPTNDHVAGVAMGLILDSGKF
AVLTDILGDEDHLGDMDFKVAGTETGITALQMDIKIQGITKEIMQVALAQAREGRLHILGKMRDALEGSRTELSAFAPRM
LTIKINPEKIRDVIGKGGATIRALTEETGTQIDISDDGTIVIASVDETQAKEAQRRIVELTADVEVGQIYDGSVLRLLDF
GAIVQVLPGRDGLLHISEIANYRIANINDVLKVGQPVRVKVIEADDKGRLRLSIKAIGGIEQQQSGTAEPAAQSEPQAE
>SEQF2266_AEE66231.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSRRLAALSGWAASVLLAGCIAPGGSGGPRGESMSADQFMQTDFNRTVTLEIRDNLASLDTLLDKLYRRNPREWRKSGV
ADQAAAVARVKRLIEERRPPAGLAGLRDIQVLAVSLDPAYGGDRVAAFVYGLADTLIAAHNDKTRIYLSDVLDGQRIYNA
ARNVEAAAWLLASRRTAQGEPLLLANEMSAAATNLSFEREFGAIIGRLDLIANLLGENSRRIGINYAQGLLFFNFLPVR
>SEQF2266_AEE66232.1 threonine dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDLAAIQTARDILRGQVLNTPFTHSRTLSDILGAEIWLKFENLQFTASFKERGALNRMLNLTEAERAAGVIAVSAGNHA
QGVAYHAQRMGVPAVIVMPRFTPTVKVANTRRFGAEVVLAGDTFDDAKARGYELARERGLVMIHPYDDPAVIAGQGTVAL
EMLQARPDLDAIVVGIGGGGLIAGIATAAKAIKPDIEIIGVQTERFPSMYAAVKGVAMESGHYTIAEGIAVKSPGTLTQE
IVTRLVDHIELVNESDIEHAIVVLLEIEKTVVEGAGAAGLAALLRLQERRDERFRGKRLGLVLTGGNIDPLMLGELIERG
MVRAGRLARIRVDLRDLPGALAQATKLIADAHASITEVHHQRAFTTLPVRNVEVDFVLQTRGHDHIQEVIAVLNAAGFAA
SNHDH
>SEQF2266_AEE66233.1 hypothetical protein BPTD_0798 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPYLNLIPNPAPPFVVLDACVLMSGIARQLLLRVARTGVFQPVWTERIGEEWRRNAARLWDIPAAALAAQWEATNASFPR
ALEVDTQPYETGLRYSDPKDFHVIAAGLARRARCGLPQAPATLVMTWNLKDFNRSELRRQGLDAFSPDHLLARWWQADPA
ALRDALATVADDYVALGREPLPLAAILQRERLYRLRRLADADQ
>SEQF2266_AEE66234.1 zinc-binding dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAVEITRPGGPEVLVPTERSVPEPASGEVLIKVSAAGVNRPDVLQRKGNYAPPPGASDLPGLEVAGEIVGGDAAAGGFA
IGDKVCALVAGGGYAEYVVAPAPQCLPIPRGLTEIEAAGLPETYFTVWSNVFDRGRLAAGEALLVHGGASGIGTTAIQLA
RAMGNKVYATVGSDERARAVEALGAALGINYKTQDYVKEVLDATGGAGVDVVLDMVAGEYIGRNLKCLADDGRIVIIALL
GGAHANVDCNQVLRRRLTITGSTLRPRPVEFKGEIARALRERVWPLLENGTLKPVVHATLPLEQAAAAHAMMEAGENIGK
IILTV
>SEQF2266_AEE66235.1 triosephosphate isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTAENRARLVLGNWKMHGNLAENAALLAELRAADAAAHCEMGVCVPFPYLAQTAAALQGSAIGWGAQDVSAHAKGAYTG
EVAAPMLAEFGCRWVLVGHSERRTLHAESDQLVADKARAALEAGLTPVVCVGESLQEREGGNTLGVIERQLEPVLALGRD
ALVRMVLAYEPVWAIGTGRTASPEQAQEVHSAIRVALDGLQASQVRVLYGGSVKGANAASLFAMPDIDGGLVGGASLVAE
EFLRIAAA
>SEQF2266_AEE66236.1 preprotein translocase subunit SecG [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLMLTVLLVVQVVSALAIIVLVLLQQGKGADMGSAFGSGSAGSLFGATGAANFLSRTTKWAAVVFFVSTAGLAYVTHKG
PSGPAIDSGVMQNFPQDRSVPQAPGSAPAGSGSSVPQAPGSGVPAAPAQPDASVPQAPWRFCPWAFTC
>SEQF2266_AEE66237.1 high-affinity choline transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSITPPDDEGAEPGPSSQAPHAQAAALRRPIERSRFGGSQRRPERQDGDDAPVSRSDLSKGPEEVLERRTASINWRVLLV
SSAVIVAFSVWAILVPGDARMRMKTAVDWIAANLGWYYVLTMTLVIGFVLWVAFSKEGDVRLGPDHSRPQYRLSTWVAML
FAAGVGIDMLFFSVTGPVVQYLHSPSGEGGTAAAMQDAVVWTMFHYGVAGWSMYALLGMAMGYFAYRWGMPLSIRAALYP
LLGKRVRGPLGDGISIIALVGTVFGVATSMGIGVVLLNVGFSLIFGLEQGLSLQIALVVGAVILTIGATTSGVDRGIRWI
SELNLWSAVAMMVYILLTGQTAFLLNALSENIGRFLVTFPARTLQTFAYEPGGPEWMGGWTLFFWAFWLAWGPFVGVFLA
RISRGWTLREFVIAAITAPVLCDFIIVSLFGNSALYHVLQGDTAFAALAVESSERGWYALLAMFPGAMFLIGLATLSGLL
FYLTSANSGAMVMSNFSASIPDPSHDGPKWLRIFWAVLTAVLTVAMLLAGGVTTMEYATLIFALPVTIIAYTVMASFYKV
LRMERAEREGQVLRRPSMAPMGGHLPERSWKQRLEQLHAFASLRQATQFLDHTVRPALGDVAAEFRNQGYEVASESLASE
RGIEEPLLRVSMDGFRAFQYHVVVVEAPVPMFSGRMSRETDVYYRLEVFTQTGSGGYDLMGLTRQQVIDDVLERFEAHLA
FLTFSTNTDTASVLTPPAPARNP
>SEQF2266_AEE66238.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MENERGTVERIVRLIAFLASQDDDVGVKDIADELQLPHSTAHRLLQQLVALNLMQRVQGARRYAFGPEMYRLGAMISNKV
NVVQLASAPLHRIVAYTNESCALALYRDQDATLVFAKQVESANQLRYQLDLYRPVSVLWGASGHAVLAHLPPERVRTLLK
KEPLSPTGLAALPARELNRDLKQIREQGYSVSTRGEKIEGAAGISTPIFGTGGHVIGCFSLFIPRIRYPEHRETELAQLL
VREAGALSDVLAGRQAAPAGAPGAAR
>SEQF2266_AEE66239.1 methylaspartate ammonia-lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVQRLLATDGIGGYYWRDQEAIGQGAPRDGFLYRGAPVTPGFTSIIQVSSTVLLTGVADDGSELYGDCATVNHAFRSGR
QQAPDAASLIAQAEGPLSRWLAQCDLSSFRDAAAQLDTMRLDGQPLHMALRYGLSQLLLQAVAAHHRVTMAEILAREYGL
TLADTPCDLLGSCGGNWYENVDKAIVRELPYFPQTAMVRTDQLDELPAYAEWISQRIRAVGRPDFFPTLHYDLHGLLSQR
VGDDLDAALVYLRKVEAASAPYPVLFEDPLDAGERGAQIALMGRLREALRRAGSGIRLIADEWCNTREDVREFVAQGCCD
LIQIKMPDLGGVDNTVQACLICRDGGVGVYLGGSCNETDISARVAAHVALAVRPVEFLGKPGLGLDEGVMIVTNEMQRAI
RSYRTRLSAA
>SEQF2266_AEE66240.1 hypothetical protein BPTD_0805 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRWQQWIIAALGCGAACLGIATSALAAPAGYPKGPVTLVVPTGPGGGTDLAARAFSERLSAILGQPVVVDNRAGAGGII
GTQDVAKSRPDGHTLLISSNQFGILPAVQDNLPFDPVKDFIPVTSIGLIPTLVLVNPSLPVRSVAELIDYARKQPGGVQY
ASAGIGSPNHLFAAMFGSMADVPMMHVPFRGTSPALVAVAGGQTAVAFASQPASQSFVAAGKLRAIAVTSARRLPSLPDL
PPVSDTVPGYDADIWLGVWAVAGTPDTVVDAIHAAFEEALKDPRVIDSLGKMGIVVATRSRQDFTAMVEREIGKWARVVA
EAGDGFQKQ
>SEQF2266_AEE66241.1 hypothetical protein BPTD_0806 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLASPSPAVGVTRPLADAIVATASSRLGAATLQTAQACLLDSLAVTLAGAQEPLVAVLDRTLAGFGGAGQATLIGRGRR
APLPDAALVNGAAGHAFDFDDMHIESAMHPSVPVVAAALAVAEHEGADGAALLRALALGIEAQLRIGEAVRPHHYQRGWH
ATGTLGHFGAAVAAGCLLGLDAQQTTMALGIAGTQASGPKETFGTMSKPLHAGQAARNGVMAALLARQGYTSTEDILDGH
YGFGRVCGDGAHWDGLLDGWGERWSMHDILYKPHASSFCTQALIECALALRATPGFAWTAVARIHGEVSAMSMANARIVE
PRDGMQAKFSLSHAIAQGLVHGQATIADFSDARAREPALRALRARTTIAQGAGLAWPEAIVTVTLADGSQLRRHADLRAS
TATSQDKWRVTLGKFMSVAGAVPGFASCDAVRDAVLRLPEAPGAVAALMALLRPQAATPSGA
>SEQF2266_AEE66242.1 hypothetical protein BPTD_0808 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADLFSVLRIAYTLALGAALAAPAAVAAPFPDRPVRLVVPYPPGGGADIFARTLSEPLAAQLGQPVIVENRPGANGIIGT
DAVARAAPDGYTILLGNSGPNAINQAIYPDLPYDAVDSFEEVSLIGYTTHVLVVHPGVQARSVTELIALARRSPGQLNFA
STGQGGTPHLAGELFKLMTGTDMVHVPYKGASPSNADVIAGQVQLTFNTLPPLMTSIRAGKVRALAVTGKQRSQLLPEVP
TIDEAGVAGYDVQTWYGIHAPAGTPAAVVDRLNQALVAVLSNAQVRAALVGQGYEVATSTPGEFSRMVRDDVAKWRKVVK
EAKVKVD
>SEQF2266_AEE66243.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE66244.1 short-chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLGIAGRWALVCGASKGLGYGCASALLQNGVNVVINARNDGVLQDAASALRKDAENQARQSGGQAGKVIAVACDITTEP
GRQAALEAPGGPGPDFDIVVTNAGGPPPGQYQDWDRDDWIKAIDANMLTPIALIKATVDGMQARGFGRIVNITSTAVKAP
ISTLGLSNGARSGLTGFIAGLARSEIAARGVTINNILPGRFDTDRLKSTMRVAAQACGQSIEALREEQQLGIPAGRFGRP
DEFGALCAFLCSVHAGYITGQNMLIDGGAYPGTY
>SEQF2266_AEE66245.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRHLDMQQLRTLVTIAQTGSFSATAEKLFKTQPAITHQMHQLEATLGTALFEKQGRSRVLTEDGQKMLKYASQVLALNDE
VFRVFQERLQGTLRIGSPHDAVETLLPSILRQASQALPQLNIDVCIDSAPRLFELLQRGEIDMAISARFHQEFEGLILKR
SPVVWLCAADYVHRPDKALPLILADGSSIYREMALAALEQHHIRWTVTRIVPDLVGIKAAIRAGLGVTPRSIDLLAPDMR
MLDEADGLPPLPEMTYHLWIRPHADDSPARQAYEMLRQAWELVDAVPAARAGPAAG
>SEQF2266_AEE66246.1 cystathionine beta-lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFDTLLTHGGRDPKAHKGMVNTPVYRTSTVVFESMAEYKATRGAKFDHVRYGRLGTHTVKELENLVAAIEGGHRAVLTP
SGVSAIATTLNTLARPGSHILVPDNVYYPCREFCEKVLAPRGVRVEYYAGSEVERLVRPDTSVVYCESPGSLTMEMQDFA
RIAAAAHAVGAKVVADNTWATPVFLQPFEHGIDVSIHAATKYLVGHSDVMMGTVTAHDPELWLAIRTEAAAQGLSISPDD
AYLATRGIRTLGVRMAAHYRNALDVAQWLAGHPRVAQVLYPALPQHPDHALWRRQMRGASGLLTLELEPCSLEQRDAFID
RLTLFAIGASWGGYESLVLPADTAGKRSLAGRDYAGPLVRLHIGLEDVEDLKRDLDQALRRED
>SEQF2266_AEE66247.1 hypothetical protein BPTD_0813 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKIQDLLSGMQPGTVAHDYLPVGTMSSGMAIAIPVTVIKGAAPGPCLWVNGQVHGNELNGVIAAVELGRRVDPAALSGS
LVITPTANPLGLDNRTKTAPQDLQDLDQTFPGNPQGMVTNHMAHALFQEVRAVASCLVNMHTMGSIHDSKPYCVYKVFPG
SAVTEAQLLRMTSFFEPSVSCRMDVGGAGELPGNIAGGLDYQCLAIDVPAFMVELGQGSWYTPENVEQALTGLLRLASHL
GLIDESGVSAGAPAPASVRRVTRRRWVMARHGGLFLAAGRAGQIVPAGAPLGRIVDLHGAEVEAVSLDTDCIVIGMRRDP
VVHTGDRVAFVATQWDQADIGAG
>SEQF2266_AEE66248.1 hypothetical protein BPTD_0814 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQHTLAKYLAAAVAVLPWTAGAQDKAAKPWQPDGPVTLILGYGAGGGHYALAQVLQARMAEELGQPLIVMPKPGAGGLIA
TDFVANARPDGRTITWSGPGVLTIWPQLRQISYDPKKLTPVNLLVQMGYMLVTKPGESRWNSVQDVIDGSKSGDVTYSSV
GVGTSNSMTGHLLNAMTGSRLREIGYKGGGPALMSTMAGETDIGFGDTATHKLIAAGRLRAIATTTRQREPRFPDVPTVA
ETVPGYEVTNWLGVIAPPGTPQPIVDRYQQIFAKLMAEPEIAKRVKELGMTPDVGTPQAFSELIDSETQLWKRLIRDQNI
KVE
>SEQF2266_AEE66249.1 hypothetical protein BPTD_0815 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTMQQRYDAVKDAMAQIGRLAAQLDGEALREAIGPVLVALGERDELFPRDEFPIRAGKPGGLYQLWRGESGDLALYASA
GKTGKKQPPHDHTTWAVIAGVYGEEHNVFFERTDDGSRAGFGTLRQIDALTVVQGNAARLSGEVFHTIEVVSEEDSLHLH
LYGRALDTLSGRINFATEEGGAYTRFMAVPETYAPWIAPRDLYEMLTDGGELAILDVRENGVYTQGHLFHAASMPLSVFE
LRVDDGLPSPHVRIVVIDDADGLAEQAVRLLHQRGYHNVAVLQGGQPGWNAAGLPVYTGVFVPSKAFGEVAEHVYGTPSI
SAVELDALRRSEEVLVLDSRTEQEFNLMSVPGAYSCPGAELVARALDHAGPIVVNCAGRTRSIIGAQSLRNAGKTDVRAL
ENGTMGQHLAGLPLERGKSASYLDRPVAAGAAQAAQAWALGMSIATLDAGELHDMLSNPYRTTYLFDARDPSCSSRATLP
RAVAAPGGQLVQQTDYYAPVRNARIVVFDTDGVQAPMTAGWLHQMGWEVYLHRPEATALVAPPRVEYDDERGVPVEAVAA
DAVIIDVGDSRTYRAGHLAGAAWAPRSRLPALLAQRKPAGPLLFTCADGRVSRLAAADAAAQGYQAAYLKGGTAALGADR
LRGDAPQFLTEAIDVWYRPYDRETGIEEAMHQYLSWETGLLDKVRSDPTVAFRI
>SEQF2266_AEE66250.1 hypothetical protein BPTD_0816 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNQRRNALRVLTGLCGAAALPRLALAQAGAYPAGPVTVVVPYGSGGSTDVIARLLVNDVSERLGGKFIVENKPGAAGNI
GTRQVGISRPDGTTLLYSTATPFCINPYVYRTLPFDPDKDFAAVSRTAKLPLVLVVNAGLGIKTPQAFIDYLRKNQQQCS
YSSYGIGTSSHIASAIFTKKIGAPGVLHVPYKDMTAMSDLAAGRNTFHIDAWSVVDPLVRAGKLTALAVSSAEPLPWAPK
LPTIASVIGSDYEVVTWHAVFAPRKTPAEIVQKLNHEFRQTIAKPSVQKTYVDQGFLTYPPATPAEIDAFVQQDKQRWKS
FVEAAGITPS
>SEQF2266_AEE66251.1 hypothetical protein BPTD_0817 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAASRDIFAPDFRRRPYWWEGYEPPECGEDTLPASADVAIVGGGYTGVCCALALREAGIEAVVLEAGRPGEGASTRSGGQ
VSGGVNVQKKALAAVGESAGQRAERLAARLRDAAASMAYVESLIERYAIECGWRRTGRLTTMWVPAHYQSWQARLDQLNA
CTGSQARMIPREELAAEIGSSVYHGAALIEHAGHLQPAQLYGGMLRAARDAGARVLGRTPVERIERRAGGYDVHTARGTV
RAGQVVIATIGYTGANLGGLKRRIVPVCTHMIATEALPPDLAASLLPTNRAVSESRRVVNHYRLSPDGRRLLFGGRARFV
PTDEATTARLLYRAMLKRFPQLAGTRITHSWGGNVAMTLDSMPHIGGADGLHYALGCNGSGVAMMSYLGHCVGRKIATQS
GEPINAFDMGEIPGHPFYFGNPWFLFAIGSWYQARDAYDHWRAR
>SEQF2266_AEE66252.1 hydantoin utilization protein B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVDNFRLQVLANHCTAAAEAMGYTLMRTAYSTFVKETEDFSAQLMTPAGKTFASPKTFGATWYTGLDYGRVIAMFDDYR
EGDIYLTNDPYSGFVATHTPDMHVWKPVFRDGRLVCFVGSHIHNTDMGGAVPASLSRTLTEVHQEGLRIPPMLLARDGVI
DEKVLRIMEVNVRMPEQNRGDLNAQIAALNVGERKVHEIIDRFGVDEFMQGAEAILDYAEQQTRALIREIPDGEYRFAEY
ADEDTVGGYPCRIQITLRVRGDELELDFTGSDPQVASSLNVPTGGDGHHSVITVGLIYVMHTLAPRNVLNAGSVRPCRAV
LPEGTVVNPQAPAAVGMRSLMAAVIQACTFGVFSRAMPDRLPACPAGGSTLLNVKTATREGRQVLSSIGPCGGGAGGGPE
HDGVEGCGANNAFLKNTPVEINEAEVPIEIIRYGLVPDTGGAGRQRGGNAATMEFRLLAPNGVVTARNRNRSELAAWGVM
GGKAGANSRFIRNPDSDAPEELRNSDLVNCAPGDVIRLQGPAGGGYGHPYERPIEQVVEDVRCGFVSRQRAREAYGVAVR
ADLSVDEAATRELRRADRGGQAHFDHGPGRSRFEAVWTPARYDAMTRIMAALPISWRHFVKHQMFAALAGSAPPQDGGAQ
DIERLYAQLSQRYADLPSPQAIAAASGAAA
>SEQF2266_AEE66253.1 hydantoin utilization protein A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRDIDGGTMGYRVGVDIGGSFTDFAVFDEDNGEIKSLKVFSRPDQPGEEVIAGVRMLGERYGIQPEQITYFTHGTTVGIN
TVIQRKGLKLALFTTENFSDVLELARLKTPDMYHLLSRRPAPLVKRSMVFGIAERMGPDGTVRAPLDEASVERAVRQALD
AGAEGIVVSLLHAYRNPAHELRVREIAEALAPGLPVSCSSETWPIIREYERTITAVIGGYVQPRVAHYLTSLQQALKNAG
VQPEPRLTKSNGGVMTAEQGKRDCVQMILSGTAAGVIGASHVAATAGLPRCLSLDIGGTSADIAVIVDGKPQYGVGELIG
DFQIYIPSVSVSSVGEGGGSIAWVDPLGVLKVGPESAGSHPGPACYRRGGTRATITDAFVCCGLVGHSELGYQAVTVDAD
ASRQAVGELADRLGRGIEETAEAIIQIAVSGMYSEVSGLVSRYGIDPREYAVLAFGGAGPMLGCFLARELKVREIVVPPS
PGTLSALGGLIADLKSDFLKTVYTDLSADRLAFVCDEFATLAGRARQWLAQEQGHAEEAELVYSAEMRYRGQSYEIDTVL
DPIHIEAGDVQAVGQAFHDMHRRLYGHADEQAPVQIVSLRVVIAGNNDKPAFPRHALRPGAPRAERKVRVWLDGAWHEVP
LYARTALAAGQQFTGPAIVTQDDCTTVIPPDYACRVDEYANLRITEGAAS
>SEQF2266_AEE66254.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDNRSVQRCLALLRSFRSGPGQSLTALSKAVDLPHSTVLRFLTTLESEGYVRKEGTLWSLTPQLLEIGFAALANTGVND
VIQSALQELADQCAGTANIGERSKNDVIIIARASSEAERRKILVVNLRVGNALPPASALCSALDLPEDQWAIARYPERKV
TTVGVALFSSQARGLSLGLSVNDDDYDMPRIEAEVLPRLRAQRDHIRRLMSLGEM
>SEQF2266_AEE66255.1 azurin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFKQVLGGMALMAAFSAPVLAAECSVDIAGTDQMQFDKKAIEVSKSCKQFTVNLKHTGKLPRNVMGHNWVLTKTADMQAV
EKDGIAAGLDNQYLKAGDTRVLAHTKVLGGGESDSVTFDVAKLAAGDDYTFFCSFPGHGALMKGTLKLVD
>SEQF2266_AEE66256.1 hypothetical protein BPTD_0822 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDQSASVSTHWVPHQPAERILMTLKTRGPQGIAAIAEVLDVTAEAVRQQMARLQVEGLVDAETRSAGRGRPTQIWRLTQ
AGHARFPDMHAEMTVQMLGAVRQVFGESGIDKLIGAREASMRASYAEAMQGADGLRERLERLVAVRSREGYMAELVATDD
GYLLVENHCPICAAAQACMAFCRSELDLFREIIGPQARVERAEHILAGARRCAYTVRPLRQAA
>SEQF2266_AEE66257.1 outer membrane component of multidrug efflux system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHPVPTTFARTAGALLAALALAGCAVGPQYQAPTPAPVKLASPEQALFSADRLQREWWRQLQDARLDALIGLALARNLD
IGLALARNLDIRQAQARLREARAALDEKELDRWPTVTAAGGYTRSLSQINPGPDQRNLAQSYRAGFDATWEIDLFGRLQR
RAEAAAARDQAAAADLAQTRLVVVAELARNYFEMRGAEQRLAVARANLATQQETLRVTAALVETGRGYAGDLASARAELA
GTRALLAPLETQRRLAQYHIAVLAAMRPAELGELRQEQPLAPLAAQLPIGDVAMLLQRRPDVRAAERLLAATNADVGAIT
AELYPRIDLGGFLGFIALRGGDLGQASSKAFALAPTISWPALHLGSVQAQLRAGQARHDAARARYEQVALQAIEEVEGAL
TRYGQNQQRLRDLLDSATQSQRAADLAQTRYREGAAPYLTVLDAQRTLLRAQDAVAQSESESYTSLVALYKALGGGWNTD
AAAPARSARTAALPASP
>SEQF2266_AEE66258.1 integral membrane component of multidrug efflux system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTFTDLFVRRPVLALVVSTLILLLGLRATGELPVRQYPLTENTTITITTQYPGASPELMQGFVTQPIAQAVATVENIDYL
SSSSTQGRSLITVRMKLNADSNKALTEIMAKVNQVKYRLPQEIYDPVLAKSSGEATSVAYVGFSSKTMPIPALTDYLQRV
VLPQLSSIDGVASVDLYGGQTLAMRVWLDPARMAARGISAGEIAQALRDNNVQAAPGQTKGLYVVSNIQVNTDLNSLTDF
RDMVVRQVDGAIVRLGDVGTVELGAASYDSSARMDGEKAVYFGLNATPVGNPLTIVERINALLPGIKQNLPPGVEVQVPF
ELARFINASIDEVRNTQLEAVLIVVAVIFLCLGSLRAVLVPVVTIPLSMLGAAAIMLSLGFSINLLTLLAMVLAIGLVVD
DAIVVVENVHRHIEEGKSPVHAALVGAREVAGPVIAMTLTLAAVYAPIGLMGGLTGSLFKEFAFTLAAAVGVSGVIALTL
SPVMSSFLLNSRVSEGWMARKAEHFFQRLGDAYGRVLDVSLRHRWVTGLIAVVVLANLPVLYGSAQRELAPAEDQAMILT
AVKSPQHANIDYVEKFGQKWDTVMQEIPEQNGRWLINGSDGVANSIGGVNLVTWQARKRSADEIQGDLQNRVNAIEGSNT
FAFQLPSLPGSTGGLPVQMVLMSAADYRVVYDAMETLKHAARASGLFMVVDSDLDYNNPVVRVDIDRAKANSLGVTMKAI
GDTLAVLVGENYVNRFGMDGRSYDVIPQSPRGMRLTPQSLGQFYVKSASGAQVPLATLVKISMGVEPNRLTQFDQLNSAT
FQAIPMPGVTMGDAMQFLTEQARLLPPGFSHDWQSDARQYSQEGSALVVTFLFAIIVIYLVLAAQYESLRDPLIILVSVP
MSICGALIPLALGMATINIYTQIGLVTLIGLISKHGILMVEFANEMQAHAGLDRRAAMERAARIRLRPILMTTAAMVVGL
VPLLFASGAGAHSRFSLGLVIVVGMLVGTLFTLFVLPTMYTLLARDHRAAGQSARARELARLDAQAGAASPAHETAS
>SEQF2266_AEE66259.1 HlyD family secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSKKGTLAAGIVAAVAIAGGAWLYLRDAGSAPAWTMAPVKVAAAPAALGPLPVTLAGIGTLQASRQVVIPAEVDGRIAR
IAFESGQAVRAGQVLAQLNDAPEQGDLARLQAQLRNARSVLERTRRLVPQQAATAEQLDQARAAYDQAAGEVRRVQALVE
QKQVKAPFDGVLGVRRVDLGQFVRAGEPVVSLTDARTMYADITLPEQALRDIRTGQAVSVGVDAYPGRAFDGVVSTIEPQ
VSAQARTLLVCATLPNPDGVLAPGMYVNARVALPERPGVITVPETAVSYSAYGDSVYVVDDTVRPATVRQVFLKTAERVD
SRIVVTEGLQAGQRVVTSGQLRLHNGAAVEVFGQDTLAAGGGTALASH
>SEQF2266_AEE66260.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGKRSYEDGCAGAHALDLVGERWALLVVRELLLGPKRFTDLRKGLPGISPNVLTQRLTELEAVAVLRRRKLDPPAGAWV
YELTDWGRELEPVILQLGKWGARSPALPREAGLSVDSLVLSFRAMFDPRAAARLTATYELVLNGQHFWARVENGQIALLR
GRPPARPDATIEASPNALAALVYDDGDLDAAVAAEQLRYSGPRAGIARFLGLFTLPEPAAQD
>SEQF2266_AEE66261.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66262.1 high-affinity choline transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQNELKPTINKPVFLTSALFILLLVVFTIAAPATAQDFFNVIQAWILGNASWFYILTVAIILLAVIFVAVSRYGNIKLGP
DHSEPDYRDITWFAMLFSTGMGIGLMFFGVAEPVMHFIDPPVGEGGTALAAREAMKITFFHWGLHAWAIYASVALVLAFF
CFRHGLPLTLRSALYPLIGERIYGPIGHAVDIFAIIGTVFGVATSLGLGVAQINSGLNHLFGVPVGIPTQIILIVISCGL
ATISVASGLDRGIRILSETNLLLAVVLLLFVLVLGPTVFLLQTFVQNTGAYLSDIVNKTFNLYAYEPTDWIGGWTLFYWG
WWIAWSPFVGLFIARISRGRTIRQFVGGVLLVPAGFTLFWMTVFGDAAIHAILVEGMGSLAETVKADSSLALFAFLEHLP
WGSVTSVVAIVMVVVFFVTSADSGALVVDQLASGGAESTPVWQRIFWSTLMGVVAIALLLADGLQALQTATIASALPFSI
ILLLALWGLFKALRLDATKRSLLHRTITRTQPVRGQNWEHRLRNIVMMPRRAHVLRFISDVVRPAMDDVAEALRKEAYEA
QVVDGEEGEVRLEVSHGVYLDFSYAVYPRSEVRPSLTPQEANDEEERRYFRAEVHLREGGQDYDIMGWTRDEVIGDILDQ
YERHRHYLHVVH
>SEQF2266_AEE66263.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLKQLEAFYWAATCASFAVAADRLHLSLSSLSKRIAELESALGLDLFDRSGHRAVLTAAGERLLPQARDLLASADRIRA
SLRAEPELGVRCRFGVGELSALTWLPRLIGRVRGRYPGLALEPYVDVGQVLKRKVAEGELDFAVVAGASSHSAIASAPVG
QAHFAWVAAPSVAGAAQSLTPQLLAGTALVSLPDGAGTTRLLDPWLAGGAPAGPRLAGCPERALRGTPRLRYL
>SEQF2266_AEE66264.1 DNA repair exonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMRVLHISDTHFGTEREPVVHALHALADTLRPDLVVLGGDITQRARRGQFAAARRFIQALQRPVLAVPGNHDIPLFNLAA
RLFDPYGNYRRALGAVLEPVYEDDRLLAIGVNSTRAARRKNGEVSRTQAQRVAQRLRDARPGQLRVVALHHPVHAMVESD
QRNLLIGREFAVPAWVDAGVDLILGGHIHLPYVAPLHGKAGEAGRRAWTVQAGTAVSRRVRGRVPNSVNLIDYAAQADSP
ACTVQRWDFQTDSGAFVLFGQQVLALNRARG
>SEQF2266_AEE66265.1 hypothetical protein BPTD_0832 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLFVNLLADVSSIDPMESYAVWIAAHPIIIFVAAPVLAAAGALLLWQLVAGLPAGRRRTMVFAVLALVAVGVFGALAAS
VEHQGGMVAFDQALARALGLSMPAALLWVLSWFTHLGDRTLLTLVAVGMTLTLLWRRRWVLAGACVAATGGAGALNWLLK
RAFQRVRPDHLHGYTLADGWSFPSGHASASMAVYGIACYLMLRTLPARWRSSALAGVAALIVAIGVSRVLLQVHFLSDVV
AGFAITAAWLALCVAVTEWALRVNARA
>SEQF2266_AEE66266.1 hypothetical protein BPTD_0833 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTREITIIGLGATGSQAAHALLHAAPDVSLTLYDRQPLRCEPFRGQATLAASAAEALRESAVIVLALTDEREIDRTLERF
SDGKVGVDLQGKRVLDLCPSPPDWVRALGAAVSEAGADYRHADPREVAGERAGPQALLRLMLAR
>SEQF2266_AEE66267.1 hypothetical protein BPTD_0834 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIPAAEPRARMTLAEFHRLLADQHPFAQVLGIDVVDIGHGTARAVLPARDTHQRLGGIVAGPMLMGLADLTMYAAVVGA
TGQAGAVTANLTIHFLRKTSGAAVIADARVLKTGRLAMAEAILRCDGADEPVAHVVSAWAVPAP
>SEQF2266_AEE66268.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66269.1 outer membrane porin protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKTLLAAALLAGFAGAAQAETSVTLYGIIDTGIGYNDVDFKVKGANADDSDFKYNHSRFGMINGVQNGSRWGLRGTEDL
GDGLQAVFQLESGFNSGNGNSAQDGRLFGRQATIGLQSESWGRLDFGRQTNIASKYFGSIDPFGAGFGQANIGMGMSAMN
TVRYDNMVMYQTPSYSGFQFGIGYSFSANDKDADAVNRVGFATADNVRAITTGLRYVNGPLNVALSYDQLNASNNQAQGE
VDATPRSYGLGGSYDFEVVKLALAYARTTDGWFGGQGYPVAVTLPSGDKFGGFGVNTFADGFKANSYMVGLSAPIGGASN
VFGSWQMVDPKLTGGDEKMNVFSLGYTYDLSKRTNLYAYGSYAKNFAFLEDAKSTAVGVGIRHRF
>SEQF2266_AEE66270.1 NADH-ubiquinone oxidoreductase chain 3 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLHPYFPVLLFILVATLIGFALLTAGSLLGPRRPYAEKLSPYECGFEAFEDARMKFDVRYYLVAILFILFDLEIAFLFP
WAIAQGTVGLVGFWTVMVFLAVLTVGFIYEWKKGALDWE
>SEQF2266_AEE66271.1 NADH dehydrogenase subunit B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAIDGILKQGFITTSADKFLNWAKTGSMWPMTFGLACCAVEMMHAGAARYDLDQFGIIFRPSPRQSDLMIVAGTLCNKMG
PALRKVYDQMPEPRWVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALVYGLLQMQNKIRLTNTIAR
>SEQF2266_AEE66272.1 NADH dehydrogenase subunit C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMMTRLETLKNNLQAAFGQDLALTESLGELTLEVAAEQWFSACTKLRTDPALRFESCIDLCGVDYLTWGNGTQPEEKTGP
VTRGRYAVVVHLLSIEHNWRLRVRTWAPDDEFPMVSSLLECWPGVNWFEREAFDLYGIVFEGHPDLRRILTDYGFIGHPF
RKDFPLSGTVEMRYDPEQKRVIYQPVTIDPREITPRVVREDSYGMGR
>SEQF2266_AEE66273.1 NADH dehydrogenase subunit D [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAEIKNYTLNFGPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAEHKTFIQALPYMDRLDYVSMMCNEHAYVM
AIEKLLGIEAPLRAQYIRVMFDEITRVLNHLMSLGSHALDVGAMAVFLYAFREREDLMDCYEAVSGARMHAAYYRPGGVY
RDLPDTMPQYGDSSKYRGEKEVRAMNDARSGSLLDFIEDFTNRFPSCVDEYETLLTDNRIWKQRLVGIGVVDPDRAKALG
FTGPMLRGSGVAWDLRKTQPYEVYDLMDFDVPVGVNGDCYDRYLVRVAEMRESNRIIRQCVEWLRNNPGPVMIENHKIAP
PSRTAMKSNMEELIHHFKLFSEGFHVPPGEAYAAVEHPKGEFGIYLVADGANKPYRLKIRAPGFAHLQSLDEMARGHMIA
DAVTIIGTQDIVFGEIDR
>SEQF2266_AEE66274.1 NADH dehydrogenase subunit E [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLSEQAYKKIDRELAKFPADQRQSAIMASLAIAQEEKGWLPAEILEDVANYIGVPPIAVQEVATFYNMFDVKPVGTHKI
AVCTNLPCALRDGEKAADYLKRKLGVDFRETTADGRFTLIEGECMGACGDSPVLIVNNKHMCVRMTEEKLDALVDGLKSQ
GESA
>SEQF2266_AEE66275.1 respiratory-chain NADH dehydrogenase, 51 kDa subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPDLYKRLAQGLDPNPLNDLSISMCLHGRHIAPQIMADVDGENWRLQEYVKRGGYEALRKILTTGMTPEDVIAEVKAS
GLRGRGGAGFPTGLKWSFMPRAFPGQKYLVCNSDEGEPGTFKDRDILRFNPHIVIEGMAIAAYAMGISVGYNYIHGEIFE
VYERFEEALEEARAAGFLGDKLLGSDFSFQLHAFHGYGAYICGEETALLESLEGKKGQPRFKPPFPASFGLYGKPTTINN
TETFAAVPWIIRNGGQAYLEVGKPNNGGTKLFSISGDVERPGNYEIPMGTPFSKLLELAGGMRGGRKLKAVIPGGSSAPV
LPADIMMDCTMDYDAIAKAGSMLGSGAVIVMDETRCMVKSLLRLSYFYFEESCGQCTPCREGTGWLYRMVHRIENGQGRP
EDLDMLDSVAGNIMGRTICALGDAAAMPVRSFIKHFRDEFAHHIEHKSCVVPQYL
>SEQF2266_AEE66276.1 NADH dehydrogenase subunit G [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVELTVDGNQVEVPEGSMVMHAAQKLGLYVPHFCYHKKLSIAANCRMCLVEVEKAPKALPACATPVTNGMVVHTCSEKAK
AAQKSVMEFLLINHPLDCPICDQGGECQLQDLAVGYGGSSSRYKEEKRVVFHKDLGPLVSAEEMARCIHCTRCVRFGQEI
AGVMELGMLNRGEHAEITSFVGRSIESELSGNMIDLCPVGALTSKPFRYSARTWELARRRSVSPHDSMGANLVVQVKGDC
ALRVVPFENEALNECWISDRDRFSYEGLNSDDRLAAPMIKGADGKWQEASWADALQAVAQGLSRVRESFGAGQIGALASE
YATTEEFSLLGRLVRALGSENIDFRLRQTDAGFDAALSGAPWLGMPVAELDNLDRVLVIGSFLRKDHPLMAQRLRQAAKR
GTQVLLLDAAADDPLMPVAGRLTVAPSGLASALAEVAVALAQAKGQAVPAEFAAVAAGEGAKQIAASLASGSNAAVLLGN
MAVNAPQAATLAANAQAVAQLAGAKLGFLTAGGNTVGGYLAGAVPGKGGKNAAAMLADPLKAYIVLHAEPSLDADNAPQA
LAALRGAQFAVALTPYRSAAQGWADVMLPVAPFTETSGTFVNAQGQPQSFKGTVAPFGQTRPAWKVLRVLGNVLHLAGFD
EETSETVRDAALAGGVEARLSNAISAPLGLGQPLDALERVADVPIYRTDAIVRRSEPLQAAPASRAPKARMNGRTLASLG
VSAGDKVRVSGAAGAIELEAALDEAVADRAVRVAAAFEQTAALGGAFGQISVERV
>SEQF2266_AEE66277.1 NADH dehydrogenase subunit H [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEWLNVLESHGQALLGPVAWMVVWSLVKIVVIAVPIILCVAYLTYWERKMIGAMHVRLGPTRVGFKGLLQPFADVFKLLT
KEVVVPSAANKVLFVVAPVVTLMPALAAWAVVPFGPEVVLANVNAGLLYIMAITSIGVYGVIVAGWASNSKYAFLGALRA
SAQMVSYELAIGFVLVSVLLVSGSLNMSEIVLGQGRGWFAERGLTFLSWNWLPLLPLFIIYVISAVAETNRHPFDVVEGE
SEIVAGHMVEYSGMAFALFFLGEYANMILLSCMAAIMFLGGWMSPIDIAPLNWIPGWIWLGIKTFCVVSMFVWFRASFPR
YRYDQIMRLGWKIFIPLTGVWLVVLAIWMQTPWNIWR
>SEQF2266_AEE66278.1 NADH dehydrogenase subunit I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEAIKDFFGSLLLTELFKGLRLTGKYFFKRKVTLRYPMEKTPTSARFRGLHALRRYPNGEERCIACKLCEAVCPALAITI
ESEQRDDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAP
YR
>SEQF2266_AEE66279.1 NADH-ubiquinone oxidoreductase, chain J [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTFTTVLFYILAFVLVIAAFRVITARSPVTAVLHLILAFANAAMIWMLLGAEFLALLLVLVYVGAVMVLFLFVVMMLDIR
IDSLRDGLKTYLPLGLVIGVVLVLEMAFVLGSTWYGAGPQAPVAGDYNNARALGEVMYTQYVYAIEVGAALLLVGMVAAI
ALTLRRRRDAKYNDPVAAVRVRAKDRFRMVKMTAQSDRAQARVASPSADAQGEQQ
>SEQF2266_AEE66280.1 NADH dehydrogenase subunit K [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLTLAHYLILGAILFAIGIFGIFLNRRNLIILLMSIELVLLAVNMNFVAFSSWFGDIAGQVFVFFILTVAAAEAAIGLA
ILVLLFRNLNTINVDELDRLKG
>SEQF2266_AEE66281.1 NADH-ubiquinone oxidoreductase, chain L [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSSPNLYLLIALAPLVGAILAGQFGTGFLGRPIGRRGSHVITILGVLISTIGSFVVLGDVLDGHTYDGTVYTWSLIGQT
KLEIGFLIDPLSAMMMVVVTSVSLMVHIYTIGYMADDPGYQRFFAYISLFTFSMLMLVMSNNMVQLFFGWEAVGLVSYLL
IGFWYTRPTAIFANMKAFLINRVGDFGFVLGIGLLFAYAGTMHYADVFAQADKLAGETLPGTDWMLLTVACICLFIGAMG
KSAQVPLHAWLPDSMEGPTPISALIHAATMVTAGIFMVARFSPLFELSDTALSFVIVIGAIGALFLGILGIIQNDIKRVV
AYSTLSQLGYMTVALGASAYSVAIFHLMTHAFFKALLFLGAGSVIIGMHHDQDIRNMGGLRKYMPITWITFLLGTLALVG
TPFFSGFYSKEHIIEAAGAANVWGASFAYYSTLIGVFVTSLYSFRVYFLVFHGKERFDAHGHGHHGDAHHDDHGHHGGTP
HESPWVVTLPLVLLAIPSVLIGAWVVEPMLFGKFFDGVIKVLPQHPAMAELGHEWHGWVAFGLHSVQTVPFWLVVAGAVI
AWYCYLINPRVPAAIQSTFSGVYKLLENKYYVDWINEQIIARGARCLGYGLWQTGDRGIIDGVLVNGSARVVGWVAAISR
HLQSGFIYHYAFAMIIGIMALVTFFVLIPQ
>SEQF2266_AEE66282.1 NADH dehydrogenase subunit M [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASDMASNNFPWLTLAIFVPIVFGLLVLALGRDDRPGLTRGLSLIGALAGFLVTIPLYTGFEAGTAQMQFVEKASWIEAF
NVNYHLGIDGISLWFVLLTAFITIIVVGAGWQVITSRVAQYMAAFLILSGLMVGVFAALDGMLFYVFFEATLIPMYIIIG
VWGGPNRVYAAFKFFLYTLLGSLLTLVAFVYLWNVSGGSFDIQTWHQTKLGYTPQVLIFVALLAAFAVKVPMWPVHTWLP
DAHVEAPTGGSVVLAAIMLKLGAYGFLRFSLPIAPDASHGLAGLMIALSLIAVIYIGLVAIVQDDMKKLVAYSSVAHMGF
VTLGFFIFNTAGLEGAIVQMISHGFVSGAMFLCIGVLYDRMHSRRIADYGGVVNVMPRFVTFFVLFSMANSGLPATSGFV
GEFLVIMGAVEYNFWIGLLTATALILGASYSLWMLKRVAFGDIGNDRVREMTDLSGREFLILGVMAIAVLFMGIYPKPFT
DVMHVSVEALLQHVAVSKL
>SEQF2266_AEE66283.1 NADH dehydrogenase subunit N [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMQSHLDFALATPEILLLVLGLAILLIDAVSSHPERKTTFVLTLATLAALTVVSLLQWRDGVEGQTFNGLYVTDSLAHLL
KVASYIAVAATLVYGRIYAQQRDMMQRGGELYVLTLFALLGQMVMISAGNLISIYLGLELMSLALYALIALRREDKVATE
AAMKYFVLGALASGFLLYGMSMVYGATGHLDLAKIAEVIASGQAKQLPLVFGVVFLVSGLAFKLGAVPFHMWLPDVYQGS
PTAVTLILGAAPKLAAFAITLRLLVDGLHGLAADWQPMLMILAVLSLAIGNLTAIVQTNFKRMLAYSTISHTGFVLLGLM
AGVVDGKPDAAASAYGAALFYMLTYVLTTLGTFGIILLLARQGFECEQIDDLKGLNRRNPWHAAIVLLLMFSLAGIPPLV
GFYAKLAVLQALVEAGHVALAVVAVMFSLIGAFYYLRVVKVVYFDDPVDQPAALAVTAGQRSILSLNGALILVLGILPGG
LMALCVQVIQASLG
>SEQF2266_AEE66284.1 hypothetical protein BPTD_0852 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQTAAVWLLIALALVSANLPFLSERVFALLPYKRAGVHAPKPFWLRLCEVLVWYAVVGLLGFAFEAQLGNRFAQAWEFY
AITFSLFLVLGYPGFVYRYLYKKRRPARA
>SEQF2266_AEE66285.1 TonB-dependent receptor for iron transport [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFYSSHPMPESLAAAIAVPLLGLLPAAQAASTAVQLPSVTVEGEYSSYQPESAQSPKFTAPLADTPRTVQVIPERLIQD
QGASDLEAVLRNAPGISMTAGEGGRPASDLPFIRGQNSASSLFVDGLRDPSTQSRDTFNLEQVDVVKGPDSVFSGRGGAG
GSINLVTKTPRNQDFTEVQAGIGTAETYRGTIDGNWVLGENTALRLNLLGTRDTVPGRDKAVEFSRVGIAPSLRLGLSGP
TRVTLGLYHYRHRRVPDYSIPYDPRTGTPITETIGVSRRNFYGLVRRDSGDTEDYAATVKWEHDLANGFKVENLARYSRA
TVEQITTMPELKTADLAKGLVYRNLRASYQVNDSFANRTDLRGTFDTGQWRHTFDLGGEFATSRRSRDRYKQEIPDAASP
CSPVTDGNNPALCASLRDPDPHVDFPGTVRRNHNPARYHTDILSLYGFDTIAFDEQWQLNLGLRWDHYKTSGRNLPVRGA
KPPVYERAARTDNLFNYQLGLVYKPRPDGSVYASYGTASTPSAVSDYAPADSISGTSQQLKPERSEAIEIGTKWQVLDRR
LLVTGAMFRETRKNTSIEVAEGLRAPAGKSRVTGMELGVAGSLTPRWDVYGGYALLDSKLVRASHKSGAQGQPLPSAPRH
AFSIWSTYKLLPELTVGAGAFYRSKVYGNADAGYNKDGTPKARWVPAYWRFDAMAAYQLNKHLTAQLNVYNLLDKTYYAK
TYRSHYAALGPGRSAMLTFKLSY
>SEQF2266_AEE66286.1 TonB-dependent receptor for iron transport [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSLDSYSASTLANSLAAAIAVPALCLMPGAQAQTSAGVTQLAPVQVEGEASPYQATTVQSSKMTAPLLDTPRTVQVVPQ
QVIQDQAATNLQDVLRNSPGITMGAGEGGRAGGDLPIIRGQNAAGSIFVDGVRDPSTQIRDTFNLEQVEIIKGPDSVYSG
RGGAGGSINLVSKTPKARDFAEGSVQIGTDSNYRATADGNWLLGDNAAFRLNLMGNKGDVPGRDHAVDFSRWGVAPTLQL
GVGTPTRITLGYYHYQDDSMPDYAIPYDPKSGQPVTETQGVSRKNFYGLTGRDFMKSRDDVATLAIDHDFSSKLRLRNVT
RYGRSVTDYAATNPDDSKGNVPNGLVYRALKAGYYTNKTFTNQTDLSGEFETGSLQHSFDVGFEYSNIKQDKDSYTQTIA
KGAMPCKVGANDASNPALCTSLWDPDPHDYYPGHLSRNDNPARYSTDTIALYGFDTIKFNEQWQASVGLRWDNYRVSGSN
IARGRNDPASTPAFYSTSREDNLFNYQLGLAYKPVPNGTIYASYGTSSTPSAVAGSNVSDAVTVSNESLAPEKSRTVEVG
TKWQLFDDRLTLSGALFQDIRKNTSVAVSATETEQIGKAKVRGIELGFSGSITPKWNVYGGYTFMDSELVEGAYNSGAVG
QDLPNTPRNAFSLWTTYKLVPQLTVGGGAYYVDKVYGNADNGRNADGTPKARWVPSYWRFDAMAAYEFNDHLTAQLNVMN
IFDKTYYTKAYAAHYAALGTGRAAVLSFNIKY
>SEQF2266_AEE66287.1 GnaT-family acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNMRQVLKTDRLVLEPQSMARFDQWFAMERQRDEAGHRDLTEDQAWLRLCARQGMWDAYACGFYYLLDPVSGEMRGEAG
FQFRRRGFGPGFDNHPEAAWAVASAHQGRGLAAEAMQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAF
DGAAHLLLERAG
>SEQF2266_AEE66288.1 3-ketoacyl-(acyl-carrier-protein) reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPREQPRFRGKRALVTGAGAGIGRAIALALAKDGAHVCVLDADHAAADETAAMVRQLGAEAATIVHDMGCASVVASIAS
MQDGFGAFDLLVNNAGISPKQPDGRKRMIWETPPEEWQRVIQVNLCGYFFALRAVLPGMVERRAGAVVNIASLAGLRYSS
IAGASYATAKNAVVGLTRQAAGEVAEFGIRINCVAPGRIETAMASVAGGEFNETIRASTPLRRLGQPADIADAVLFLLSE
QAGFITGETLPVTGGRGL
>SEQF2266_AEE66289.1 acetolactate synthase catalytic subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKAAGVAQIFGQSCPTALFLAADAIGIRQIGYRTENAGAAMADGAARVGRQLTVITAQNGPAAALLVAGFSEATKASVP
ILAIVQEVPRANADKNAFQELDHVQLFASCAKWVRRIDVAERAAEYTERAIRIATSGRPGPVVLLVSQDVLTTACPQARP
VAQDSDEPLGRFPLDRTVPVAGRLAQLAQRLLDAKRPLVVAGGGVHLSGACDALARLQSLAGLPVATTNMGKGAIDETHP
LSLGVIGNAMGTRSPAKHFMDYVRSADFVLFVGTRTNENGTASWSLFPEQAQYAQIDIDSEEVGRNYGAMRFAGDAAATL
QALGDALQGRGQAVAARRMAELAPAFEACRQAHRAELAPYAQSDASPMRPERIMAELRASHGDIIWVADASYSSIWLAQF
IPCTEAGTRFVTPRGIAGLGWGVPMAIGAKIARPGARVICLTGDGGFAHCWAELETARRHEVPLTIVVLNNGVLGFQINA
EESRFGTHTDVCHFGAIDHVAIAKACGCDGASVSDAASLRQAMAAAERSPVPFVIDVKTEPSAFPPISAFESQLRPLGGE
TP
>SEQF2266_AEE66290.1 hypothetical protein BPTD_0858 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLHRVLISLATGVLTLGVLGAAHADAYPTKPIRLVVPYPPGGITDIAARGLARAMSEELKQSVIVENRAGAGGIIGSDY
VARAPADDYTLLIGTSATHGTNPSTYANLPYSATGSFEPIAAVASSPLLVVVNPSSPVRDVQGLIAHLKANPGKESYAST
GTGGSLHLTLELFKLMTGTDIQHVPYKVSAPALTDLIGGHVQLMFDNMPSSLPQVKAGSLRALAVTGPQRSALVPELPTV
AEAVPGFASASWVALYAPKNTPAAIVQTLNAAANKGLKSQDVLAQFSAAGLEPTGGTSAALDSFMRAEIAKWAEVVKKIN
LPPSKL
>SEQF2266_AEE66291.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNVTFRQLTAFIEVASSRSFSQAAQALHVTQPALTAMIQKLETQLGVVLFTRTRRGAELTTTGRELLPELQRILANLEVV
IEDVRGAASPRGGTVTLACIPSLSNTWIPSLIARVEQAYPRIKVILKDAMTENRSIHEMLRTGDIDYGVGSPSVEQDGLE
FDLLAHDELVAVVPQDHPLARRTLVRWSELAESPLIGMSYQSHVRMLVDEAFAANGISKRPKREVSLITTAIGMVRAGLG
VSVLPTTAIEVCNVAGLKVLRLHAPRVRRPLGFLHLPTRSLSPAARLLLRFVKDAGPIPLGKQPE
>SEQF2266_AEE66292.1 phosphoserine phosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIHHLVIQSPALAAEHAEQLAALAQAQGVTRISTTAARLLDVQQDGDTRAQVRHWAETHGVDAAFVPAGLALADCRILA
MDMDSTLINIECIDEIATVAGVGAQVAQITEAAMRGEIKDFSESLRRRVALLAGAPAAALERVYAEKLRLNPGAERLLAS
VRAAGIQTLLVSGGFTFFTERLRERLGLDHAHANTLEVDADGKLTGRVLGDILDGDAKAAHLAALAQCLSARPEQIIAIG
DGANDLKMLARAGFAVAYHAKPIVREQTPYALNVCGLDGVLNWFEK
>SEQF2266_AEE66293.1 transcription-repair coupling factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIPATATTLSALKPGARFTQPRPPGSGDGWLLADLARQAGKPLVVLTADPLEAQRLADEIPQFAPELRVRQLPDWETLP
YDAFSPHQDLISQRLRTLHALMNQGVDILTVPVTTALYRLAPPAFLAAYTFSFKQKDRLDEAALRAQLTLANYSHVTQVT
APGEFCLRGGLIDLFPMGSVVPYRLDLFDDEIESIRSFDVDTQRSLYPVGEVQLLPGREFPMDEEARNRFRARFREVFEG
DPSRALPYKDIGNGIAFAGIEYYLPLFFEQTATLFDYLAADTITVTVGDIDDAMQRFAHDTRSRYDFLKVDRERPVLPPD
TLFLDHEALFARLKDFPRLALMAERPHPDFAAAPDVAVARRADDPVARLRALLAQTGDRVLLCADSAGRRETLAQMLGEH
GLAPEAQADSIQAFLDDGARFGLAVAPLSAGFCVPGGALLFLTENDLYPGHAGVTRRGKRTQERTSNVEAMVRDLAELRA
GDPVVHAQHGIGRYHGLVNMDMGEGEMEFLHLEYASGSTLYVPVSQLHVIARYSGADPDAAPLHQLGSGQWDKARRKAAR
QVRDTAAELLALYAQRAAREGYAFKLPMSDYEAFAEGFGFEETPDQAAAIQAVIMDMTSGRPMDRLVCGDVGFGKTEVAL
RAAFLAVANGKQVALLCPTTLLAEQHAQTFSDRFADWPVRVVELSRFRSAKEVAAAVEGINDGRVDIVIGTHKILSKDVR
FKRLGLVIIDEEHRFGVRQKETLKALRAEVDVLTLTATPIPRTLGMSLEGIRDFSVIATAPQKRLAIKTFVRREDGSTIR
EALLRELKRGGQVYFLHNEVETIHNRRARLEELVPEARIAVAHGQMPERELEQVMKGFYQQRHNVLLCTTIIETGIDIPT
ANTIVIHRADRFGLAQLHQLRGRVGRSHHQAYAYLLTPGEDAITNNAKKRLEAIQAMEELGSGFYLAMHDLEIRGTGEIL
GDSQSGNIQEVGFSMYNEMLNEAVRALKAGEEPDLDAPFNLACEVNLHAPALLPSDYCPDVHGRLAIYKRLSHADGEDDL
IRIQEELIDRFGKLPEAAQTLLATHRLRLAAQPLGIVKIDASETQALLQFGAKTTVDPLRIIELVQRQRHIKLSGQDKLR
VEIKAPQIAARADAVRAVLRALK
>SEQF2266_AEE66294.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSESLIAIVPAAGIGARASLPGEAAVPKQYRPLAGQPMLRHAVRALLADPRIVQVRVAVSAGDGWVEQALAGLPRTVWRP
CGGPNRADTVAAALADSGAAADDWILVHDAARPGLPAAALARLIDACLDDAVGGLLALPVADTVKAGRQRVSRTVDRDGL
WLAQTPQMFRAGLLRDALARARAAGLAVTDEASAVEAAGHAPRLVAGALRNFKVTWPDDFELMEKWL
>SEQF2266_AEE66295.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIPFRVGQGFDVHALVEGRPLIIGGVTIAHTHGLLGHSDADVLLHAVTDALLGGAGLGDIGRHFPDTDPAYRGADSRVL
LRAAFDKVRAAGWAPVNVDATIHAQAPKIGPHAAAMVANIAADLALDAGAVNIKAKTNEGLGYLGRKEGIAANVVVLLAR
AG
>SEQF2266_AEE66296.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66297.1 fructose-1,6-bisphosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRKTLTQYLVEQQRSAQALGPEVRLLIEVVARACKAISHAVSKGALGGVLGSLESENVQGEVQKKLDVLSNEILLEANE
WGGHLAAMASEEMETIHLIPNRYPKGEYLLLFDPLDGSSNIDVNVSIGTIFSVLRAPHRVAGADVCEQDFLQPGSQQVAA
GYAVYGPQTMLVLTIGNGVVGFTLDREMGSWVLTHESMRIPEDTKEFAINMSNMRHWAPPVKRYIDECLAGKTGPLGKDY
NMRWIASMVADVHRILTRGGIFMYPWDAREPGKAGKLRLMYEANPMGLIVEQAGGAAIDGTGRILDIQPDKLHQRVSVIL
GSKNEVERVGRYHAEAHAS
>SEQF2266_AEE66298.1 aminopeptidase N [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTDTPVTVYRKDYQPYPYTIADVALEFDLDPASTTVRCLMQVARKADARDDAPLVLDGEALELVSIRVDGRDWARDGYV
LDDATLTLRGLPPSAAVEIVSRCRPAANSTLMGLYVSGGNFFTQCEAEGFRRIAWFADRPDVMSRYRVTLRAAPDYPVLL
SNGNLLATATLPDGRLQAEWEDPFPKPSYLFALVAGRLTHREERVRTQSGRDVLLQVYSDPGSENRTEWALESLRHALRW
DESRFGLELDLDRFMVVAVRDFNMGAMENKGLNIFNAAYVLADPATATDANYEGIESVIGHEYFHNWTGNRVTCRDWFQL
SLKEGLTVFRDQEFSADMMARGLDEQAAASARAVKRIDDVVTLRAAQFPEDAGPMAHPIRPDSYQEIGNFYTATVYEKGA
EVIRMQHTLLGEPGFRAGMDEYFRRHDGQAVTCDDFVAAMESVYAARNPGRDLSVFRRWYSQAGTPRVSVKLDHDAQSGR
CTVTLTQRCAPVGVEKRAGRDFAKQAFHIPFAIGLLDAQGRALPLHLNGQPARDTVLLELTEARASWTFEQVPDMPVPSL
LRGFSAPVIVEYDWSDADLALLSAHDTDPFARWEAGQELATREILALTASHQAGQPLAVRPAFIAAWRALLTDPTLDAAY
RARALALPSEKTLAERMEQIDPPALAVARDFLRAEVGRQLAAPWRAAFDANQTPGAYSPAAGPAGRRALKNQALSHLMAA
ESADAQALAQAQYDQADNMTDSMAALSALVNFGAPDSAAAALAAFYERWRDDPLVVDKWFTLQATARSTDIDAVRALMAH
PAFTLRNPNRARALVFQFCLNNARGMHRADGRGYDFWAEQVLALDALNPEIAARLARGLDNWARFAEPLRGAMQAALAHV
RAHAGLSRNVQEIVSKALDLAA
>SEQF2266_AEE66299.1 hypothetical protein BPTD_0867 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFSIHAYSRLARLAGLAGLAGLAALLAGAALVAGCAAPSVSARVTSFQQWPDGVAGQTYQFAPESGQLNNLEYQSYQDMV
RAGIGATGLVEAREGRKARFTVSFRYGSAQTQVMVRRAYDPYFYGGYGGYYGPRWWGGGVGYWGPEWVDVPTVAYRNSLS
LEIRDTARGGAEVYRSTAYITSGRDDLLGAMPYLVQAIFDNFPGNNGSEREIEYPLAR
>SEQF2266_AEE66300.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66301.1 ABC transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARNKLDLRGSAFKAVLGFTFRHWARQPWRIGLIAMLALLSALADILTPLYVGRLIDAVAGGAPADTVARNAALGAFWLL
IALGVGATLLRQAIFMNIIALTLKMMHDIVGLAFHQVQRLSSDWHANTFAGSTVRKITRGMWALDLLNDTLLIALLPSLA
MLAGATALLGWHWPLMGLVVGLGSLLYVAVTMALSLDYVAPAARLGNAWDTRMGGALADAVSCNAVVKAFGAEWREEARL
ARVTDKWRHRTRRGWVRGTINGGVQGAMLVAMQAAILGVALLLWQRGQASVGDVTFAFTTFFMLQGYLRDVGMNIRNLQR
SINDMEELVSLQRQPLDVEDLPGAGPIDIGAGEIRFENVTFRYGPHEQPLYRDFSVRIAPGERVGLVGHSGSGKTTFIKL
IQRLYDVDGGRITIDGQDIAAVRQASLRSQIAIVQQDPVLFHRSLAENIAYGRPGATQAEIERAARLASAHDFIMALPKG
YDTLVGERGVKLSGGERQRVAIARAFLADAPILILDEATSSLDSESEVLIQRAMERLMEGRTTLVVAHRLSTVRALDRLL
VMDRGRVIEEGSHEALIRLHGGVYRRLFERQALELTRGLSQWELGGAAAS
>SEQF2266_AEE66302.1 thiopurine S-methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDADFWLDRWREGRTHFHQTRVTPLLQKYWPTLDVPAGGQVLVPLAGKSLDMVWLAGQGLRVLGVELSQLAVEQFFDEND
LRPEIHQSAQGRHYVAGNLELICGDVFALEDATLAACAGVYDRAALVALPEPMRKRYAREVYGRLGRGCRGILITLDYPQ
DQMEGPPFSVDDAEVQALYAGHTEARLIDRRDILDKEPKFNQRGVARLDTLVYRLERLG
>SEQF2266_AEE66303.1 vir-repressed protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGMKSILGLLLAAALLGGCAVYTPHGAAVVDPPDRGGGFCPPGQAKKGNC
>SEQF2266_AEE66304.1 hypothetical protein BPTD_0872 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFCMATLMLAASLALAGCAGGQGSQPGPPHPGAVNPYSSGGFHDAGPDYPDTGR
>SEQF2266_AEE66305.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSSLYRIAALSAAALLLAGCANQRAPKESGFLGDYSQLREEQVPGGARLIYRDAALKPRQYTAMWLSPVEYYPSPQPSA
QVSMETLTELQNYLDQSLRRKIGREIRLVNGPGPGVAKARIAITAVGSESEALAAYQYIPVALAVTGARAVLEGGRPQQA
TIAIESKVTDSQTGQLLWASVRGGTGERVRAIAQGQASVPASALKPLIDEWTDNVAREIRNYVRSK
>SEQF2266_AEE66306.1 hypothetical protein BPTD_0874 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDAHDPYLVSGRFEIANLLQTLQARQCLLLMRIPGRPFNSVTSVLHVDAQAGQVVLDAAQDDTLNQRLADVGDVAFDTS
LDNISISFAAARVARCEFEARPALLVDLPETLTRVQRRDTFRIAVPVAQPATWVREAGGAEPLALCDISPGGLALADPLQ
TLDPAPGKIYRGVLALPELGAFAAAIRVVHHLDEVLAKGKTSRRIGCAFVELDKGTGIRIQAYVNALQRDQIARQRGL
>SEQF2266_AEE66307.1 putative phospholipase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQVPDPRSPFIRPALAGALALALAGMSLPALAGISYRLDRPAAAPGETVRLEAVFFNDGSASAAWNAPQQLVLQWRGADD
QTIRSLAQRPAGEAALNIPVNNFARMSWDAVVPVHARGLQAVSIEGESTMLALDATGREQDTLASTPADVPVTDARTGQP
LPPAAVTAAGVSPDSGPAPAQVAVSQTFQPASAFDVFRSAISEYQPMYFDIGTREQTTARFQISAKYRLFSPKGDRPATF
GENFYLGYTQTSLWDLEGDSKPFIDTTFNPSAFWLSDNIWSSASQNWRVGLNTGVEHQSNGKSGNDSRSLNDAYVQPALN
YRFDSGSTLTFAPKVKTYFGVARENLDYADYAGYVDWNLRWAQDGGAVVSAMYRQGASSRRTTQLDFAWPLKRTWLDMNG
YLHLQYFNGYGETLLGYNQRHDSQFRIGLSLVP
>SEQF2266_AEE66308.1 hypothetical protein BPTD_0878 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNITQEIAKRVVQTSIRDLPADAVGYSETLAMSALGAMAAGHRSAGGREIVDYVKSAGGAAQATVLGHGLKTSMEMAGLA
NGTFAHATEYEDDSFPEAVSSYTLFPAIFAVAEHAQASGARVVEAFAAGYEAQARIGLACRQARRNGFMVLSLAGSIGCA
ASAAKLLGLDERQTTMALSLAASQGAGIGYQTGSMAHIVEMGFAARNGIAAALMAAQGMTGQPDVLEAPRGLMNMITGDQ
VEAPAAIIEHWGRPYRLMEIGIKSYPCCYHLQRIIETTVDLRHAEGLAAADIEEISVEVNAFFPTVVQHMEPHDEIEAQF
SLPHVLAIAMLEDQVVPAGFSQARIDDAAFQAFRRKVRQVVREDWGWTPTGWTPRITYRLADGRVIVREPEQARGQPPAL
LTFDQCVPKYLGCVQGIYPEQQVERSIALLRGLAGLDSVAELMRCLATPA
>SEQF2266_AEE66309.1 biotin carboxyl carrier protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVVKTKFSDLTHEDIDRILEIVNRVDDIDLQIQVDGLGLRVRKGNVGAPVAPPAVSAPAAAEAPAPAPSPAPAAQPAAA
PAAAPAAPAAARQDLLSITAPMIGRFYAKPSPNDPAFVALGSQVGPDDSVCILEVMKLFNTVKAGVAGEIVEILVQEGDM
VEEGDVLFRVKPQ
>SEQF2266_AEE66310.1 carboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRRIGIIDTTLRDAQQCLWATRMTAGMMDPIAQALDEAGFDMIDFMAPVQFDVCVRYLREDPFEKARHFRKRFRNTPMR
SYCRSKSLVGFSMVPDDMVELWIDCLAANGFSAVGTLDSLLDVDNMKVSVRRAKKIGIKSIGALVFCESPLHTDALYAGT
AAELVRCGVDGIMLKDSGALLTIERIRTLIPALRAAVGDIPIEVHSHSNTGLVQRVYLDAADLGIDQLHTSIAPLAGGVA
QPSIQNMTRNLAQRGYRTDVDMARVEEISAYLHRLAARYDFPLGKPMEYDEFHYRHQMPGGMTENWRFQLRQAGLENRFE
EILEEIGRVREDLAWPIMVTPFSQIIGVQAMLNVVNGERYRAVPDEVKMYALGHFGRLLGPVEPNALDRIVANGSPDVGL
TPQPKDPALPGLRKANPGMTDEELLLRYMFPADDVEATLGCKPLKLTVPAGGPIVRLIEEILPRAGIRHFELRSQSEHIS
FTRP
>SEQF2266_AEE66311.1 hypothetical protein BPTD_0881 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRRIRMTQPAASSHAVIVMYDAPAELDAWMHGDHYREVLATPGVTGVRRYEVLDGPQACRKYLAVIETDDLDATLAWRD
SEAGARSQ
>SEQF2266_AEE66312.1 hypothetical protein BPTD_0882 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFRTAMHYPRHNLTFKGARSAWLEDVGLLFEEMDSAGIRYGVAMGRASSGAGNLGGVANQDIVDLLATYPDRFLGFLGVD
LDNIAGSLAEIRELAGAPGVKEISIEPGSARVPRWSDDKTLDPVYELALELKLPVSISLSGLLSALAGHDITWSSPVSIQ
RVAQRYRDLKIVVSHAAWPYADEMVVVALACPNIYVSPDLYASTRGMICADSYVKGANMFLEDRTLFGTAYPVKDIQDSL
RDFLQLGWREDIIHKVLWTNAARLLGVDK
>SEQF2266_AEE66313.1 hypothetical protein BPTD_0883 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRTALIAGPYGIVGNALVQHLARDAAWDVVTISRRQEAALPGVRHIAADLLDAAQAEAALAAFPGITHVFYCAYAPRPT
LGEEAAPNLAMLANLVSAVDRHARGLERVVLVHGTKWYGNHLGPFRTPAREDDARHCPPNFYYDQQDWIAARQRESGRWS
WTAFRPHGIFGYALGSPMNHLMALSLYASVMKAVATPLKFPGTPAAFAALNQCTDARLLARAMAWSVDVAACENEAFNFH
NGEPERWANLWPAVAEAFGMQAGGVQQIRLAAMMPANEAAWQAICQRQGLRHFPLEAYVNWSFADWVYSNGFDQVCSLYK
LRRAGWTEILLFDDMLKSMLSDLRQRKLLPA
>SEQF2266_AEE66314.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQMKDNNVSNRATLVLYENRSIPLYRMIKEELIRFVQKKGIKSGMALPGDNELASQFGVSVGTVRRAIAELVSERIVIR
QQGRGTFLAPYDTSRMLNSFWHIERRDGVVDVPLVSTHGFSQASATEEVAQKLALQPGDPVFVIKNSMTMQGTPVLLDTI
YVPVRTFEGLTREKLSARDATIYDFYREQYGINIVKTIDRVSATVADKDTAKRLGCKLGASMLRILRVAYSFGDTPIEYR
CSLLDSENHEYVDVTGGDTSRYG
>SEQF2266_AEE66315.1 biotin carboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLKKVLIANRGEIALRIIRACREMDIRTVQVYSSADEDSLPVRLADEAAPIGGPEPSASYLNIAALIAAAREHGCDAIH
PGYGFLSENEDFAQACIDAGIVFIGPDPGAIRMMGDKAQARKIAKEAGVPIVPGSPEPVSDVEEAIRVAREVGYPLLVKA
AAGGGGRGMRVIQGEAQLREGLERASMEAKSAFGDGSVYIERYISPVRHVEIQVFGDGEDVIHLGERECSIQRRHQKLLE
ESPSPVLSDETRQRMGEAACALARAVKYRGAGTLEFVMDGKSGEFFFIEMNTRIQVEHPVTETVTGVDLVRLQLAVAAGG
RLGLRQQDIVMKGHAIECRINAEDPQKAFMPSPGTVNDIRLPSGPGVRMDSHVYRGYKLPPYYDSLLGKLIVWDESREKA
IARMLRALGELEIVGVKTTKEFHERLMRDEDFIAGNVSTQFVKEKLYADHPMCHLL
>SEQF2266_AEE66316.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66317.1 hypothetical protein BPTD_0888 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGDVMQRGELAYWLNVVVENGEPGAPQIPVPEQFVTALTTLRCIERNAQGQLVVTEKGRLALHMEEPGALHRQ
>SEQF2266_AEE66318.1 hypothetical protein BPTD_0889 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQHRDQEVLIDVSTAAMDTGGYGVLLTVTAEGGTEVDAAFSYLGTCASLDEARDRAEAFAQDWLRENIYR
>SEQF2266_AEE66319.1 putative mannose-6-phosphate isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHARRTPMSAASFHTDLPALVAQLRQHFNTVIVPLWLERGFDAGLGLPCEALDAHGAPLPAQRYRAMACARQLYVFSRTD
GAAAAAHAERLFSSLLRYFQNAAHGGWRHSVDAQGQPLDDTQDLYTHAFVVFACAAYFARTRDARARKTLLATVDVIEQR
FRTRQGLYVAALSADWAQVVRGPAQNPVMHLTEAYLAAAGVVEPAWFAQTLGRLTQDVASTFLYAPRLCIAEEPLDQPPR
FEPGHQFEWYSLLHGAPDLFGDLELGSALQRGCAWVRQHGVDAHSHGVAAVLDESGAVRDATQRIWAQTEYARYLALSGQ
WPELATQLRAFQARFLHQDGWHECLDAQGNVSRADMPSTTPYHLATCYAALEDALAGQG
>SEQF2266_AEE66320.1 hypothetical protein BPTD_0891 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVMCPACQAINAGSSGVEPHPRLGHQGFTNPSQKGREANREDHFRCIECGAKWLRETDRWGVDLGFRLAP
>SEQF2266_AEE66321.1 hypothetical protein BPTD_0892 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVQKVLNGFAVVAFATQPEHGMPPRAFIQTAPMDGAGQAEPQVFEIFLARRFRSAVEAMSAARNALDRVVSVDQDGVPAP
LPD
>SEQF2266_AEE66322.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWTYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66323.1 putative ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDSTPAVRVCAAADLVDGGLGVKVPVTDGAGQASAFFVRYRGQVYGYLNRCAHVGVELDWENSFFTRAGDLIMCARHGA
TYEPDTGLCIGGPCRNGRLTALQVDERPDAGGMAVYWLPSGKIQPRG
>SEQF2266_AEE66324.1 ABC transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMPSPSPTPAGRNSLDTLRTLAPFLWPADRPGLKARVVIAILCLLAAKAAVVYVPILYKSAVDQLGGGAPGAVTVPLGLI
LAYGAARVLSLLFSELRDAVFARVGQHAIRAVGLQIFLHLHALALRFHLARQTGGLTRAIERGTKGIQTLLTFLLFNVLP
TLFEIGLVCAVLWKMFDGWLALATGATVTLYLAYTLVVTEWRTRFRRQMNETDSEANTKAVESLLNYETVKYFGNEEHEA
QRYDASLRRYERAAVRSQVSLSILNIGQAVIISAGLTLVMWMAARGIAQGRYTLGDFVLVNTYLLQLYDPLSFFGFIYRE
IKQALIDMERMFELLGEGREIADPPGALALRLEGGAVEFREVYFGYDPRRPILKGVSFRIPAGKTVAVVGTSGAGKSTLA
RLLFRFYDADRGAILVDGQDVRGVTQASLRAAIGVVPQDTVLFNDTIHYNIAYGRPGASDGEVQAAARLAHIHDLIMAMP
DGYRTMVGERGLKLSGGEKQRVAIARTLLKNPSIFLFDEATSALDTHTEREIQANLREVSQGRSTLIIAHRLSTIADADE
IIVLGDGRVVERGRHQALLAQGGIYAGMWARQQEAARPAAVALDD
>SEQF2266_AEE66325.1 oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQVPVLKLNDGNAMPQLGLGVWQVPNDQAAASVKAALAAGYRSIDTAAIYGNEAGVGEGLRAAGVARKDLFVTTKLWND
RHGYDEAQRAMDESLRKLGLAYVDLFLIHWPVAGSDKFVDAWRAMVAMKEDGRARSIGVSNFTIANLRRLVDETGVVPAV
NQVELHPGFAQRELRAFHAEQGIATESWSPLGQGAVMHDATLAGIAARHGKSAAQVTLRWHLQNGLIVIPKSVTPARIQA
NIDVFDFELSADEMADIDALPEGPRLGPDPATFTG
>SEQF2266_AEE66326.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEYVRLGSTGLKVSRLCLGCMTYGEPARGNHAWTLDETQSRPFFRQALDAGINFFDTANSYSDGTSEEFLGRALREYVPR
DEVVVATKVFFPLRKEPNSGGLSRKAIMREIDASLRRLGTDYVDLYQIHRWDYDTPIEETLQALHDVVKAGKARYIGASS
MHAWQFAKALYLADRHGWTRFSTMQNHYNLLYREEEREMLKLCCAEGVGVLPWSPLARGRLTRDWAEGSARADTDDVLKR
LYSATEQADRGVIDAVGEVAAQRGVSRAQVAMAWLLRQPAVTAPIVGASKPRHLEDAVAALALRLTDEEAARLEAAYAPH
PVAGFA
>SEQF2266_AEE66327.1 hypothetical protein BPTD_0898 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPRQHFYFVWGMPIVLGALSVFGLLAALLGTGVWHWASWLALAWLLVVIARFWIVPRERRPAPGPRRGG
>SEQF2266_AEE66328.1 hypothetical protein BPTD_0899 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTASTIKTWYLVHKWTSLVCTLFLLIICITGLPLVFHHEIEHLLDEGKPVAQVAEGTPDASLDTIVARAHALYPDEYID
YVFLDDEEPQVYVGFTPKLGQAVEAGHAVRVDARTGDILHDGPKYSADRFSFMGIMLALHVDLYAGLAGELFLGLMGLLF
VIAIVSGVVLYGPFMKKLDFGTVRASRSNRLKWLDLHNLLGIVTLVWAFVVGLTGVINELSTPLFRLWQQTELQAMTAPY
QGKPVPRPAELSAPQRAADTALAAVPDRALTGISYPGNAFGSPQHYIVWLKGNTPLTSKLNTPVLVDGKTGELAAVARMP
WYLTVLELSRPLHFGDYGGMPLKIIWALLDLITIVVLGSGLYLWLARRKATDARVAELVRRHQQAAEPQRTPA
>SEQF2266_AEE66329.1 serine/threonine protein phosphatase 1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAPNLQYPAFLRLPRNPAGRDFAVGDIHGHFSRLEQALDECGFDPRRDRLFSVGDLIDRGPDSEAAVQWLAHPWFYAVQG
NHEDYAIRHVRTGLVDQDNWRSYGGGWFLDAAPERQRAWAGAFAALPVVIEVATQAGPVGLLHADCPVRDWSRLEYFLQA
RPKRARSVCQWSRERLASGDARGVDGIRAVVAGHTPVSEPVVLGNVYHIDTQGWRPHGYFTLFDLCTLSAWPRPAQAGAP
AARG
>SEQF2266_AEE66330.1 penicillin-binding protein 1A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTSSQSTKPPPPGGPRLFRKSLLIKAGVAVAGLGAAGALALGLALALAWPSLPELHAMTDYRPRVPLRVYTADGVLIGE
FGEEHRNVLRADEIPQVMKQAVLAAEDDRFYQHGGVDWMGVARAVLTNMVKLSKSQGGSTITMQVARNFYLSSEKTYSRK
FYELLLTYKIEAELTKDQILELYMNQIYLGHRSYGFAAASRTYFGKPLSEVTPAEAAMLAGIPKAPSRANPLASLPRATA
RQQYVLGRMQTLGYLTPEQVQEARAQTIVLRGSEGGPAHGFAIHGEYPAELVRQLMYSIYQDGAYTHGIDVYTTIDSKAQ
QAAYRAVRAGVLDYTRRAPYPGPQAQIDLPDGIEQDAQAFDEILDSVQDQAPDSDDLLAGVVLSTSPTSVTVARTATDIV
TVDDKKALAIVARALAPNAKDALRIRRGSVVYLHKNGDTWEIINMPALQAALVSMSPADGAISAMIGGFDFHRGSFNRVT
QAWRQPGSTIKPFVYAAALERGMTPATQVNDQPFMLTAEQTGSRAWEPKNDGNRYEPMLTLREGLYRSKNMVSIRILQAI
GPEYARDYLTRFGFEQARWPAMLPLALGAGGATPLQVANAYSVFANGGYRVTPYLIDRVTDRSGKVLMQTTPVKAGDETA
RAIDPRTAWVIDDIMHDTTTKGTAARVYRTLKRNDIAGKTGTTNDAVDVWFSGYTAQQTTTVWMGFDQPRSLGTNEFGSG
LALSTWLDYEQPTLKGTPQAPRAPRPQGLIVDNGEYYFSEFPPGQAVAALDLSSGDELTDFLNNMRPSDGAPARVQQPGQ
PPAGSSSGGQPPIPPIPVPRADLPDGQATPASLPLGAPPAAASAPPAAPAHGGASAQPVTLPGRVGATPL
>SEQF2266_AEE66331.1 putative peptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTLIKRTVLAAGLIGTTLGAAAQPPRAYPLKDFFRNPERGYFRLADDGKTLGFMQPVSIDGQPPRMNIYVQALADGVPA
GEPRKLTSETARDISNFFWKGDDTVLYQKDFGGDENFHVLAVNARTGQVADLTPYEGVRASIEDDLPDDPDHVLISHNRR
DPQVFDVYRVNVRTGAAELVAQNPGNVVGWQTDHAGKVRAAITSDGLNTTLLYRDDEAAPFRPLITTDYRVSVSPAFFTF
DDRKLYALSNRGRDKLALVVIDPATPDVEQPVFEPDEVDLDAAGYSRKRKVLTVASYQTDKPRHRFFDAETEALYARLAR
ALPGYDFALQGWNRDEDTFIVAAYNDRTPGSRYLYDARRDSLHKLADINPAIPEADMAPVRPVSYQSRDGLTIHGYLTLP
AGRAPRNLACIVNPHGGPWARDGWGYNPEVQFLANRGFCVLQMNFRGSTGYGRKFWEAGFGQWGLKMQDDITDGVQWLID
QGIADPRRIGIYGGSYGGYATLAGVAFTPDLYAAAVDYVGVSNLFTFMNTIPPYWKPLLAKMQDMVGDPVRDKARLEATS
PALHVDRIKTPLFIAQGAKDPRVNKAESDQVVQALRQRGVEVEYMVKDNEGHGFHNDENKFEFYAAMEKFFTEHLKP
>SEQF2266_AEE66332.1 hypothetical protein BPTD_0904 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTPHTDFFGLTIPFMQLLGVVPEHSGNGTARTRLPARADLVNSRGDIHGGTLMSVLDFTLGAAIRGDTPEVGVATIDMN
TSFMSPGRGDLVIETRCLRRGASIAFCKGEIRDSAGELVAKATATFKIIQRRPGGD
>SEQF2266_AEE66333.1 DNA polymerase IV [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQLQRKIVHIDMDAFYASVEQRDNPALRGLPVVVAWTGPRSVVCAASYEARRYGVHSAMAAARAQRLCPDAVYVPPDFN
RYREVSRQVRAIFARHTDLIEPLSLDEAYLDVTCNKLGLASATEVAQIIRRQIREETGLTASAGVAPNKFLAKIASDWNK
PDGLFVIKPSRVLDFLQPLPVRKVPGVGKVMQARLEQLGIQTVGDLSRHSVAELEQRFGRYGVRLYELARGIDERAVQAD
QPAQQVSAETTFDTDLALEALGEALERLAAKVWEQGAKKGRIGRTTVLKLKTDRFRILTRSLTLMQPPGSAAELAAIARQ
LCTRVDLPAHTRYRLVGVGMSNFPDAQAEAPRQAELFGDAF
>SEQF2266_AEE66334.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66335.1 putative decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGAIAAHETGDTAATATWDETVWRILKKEDIRLVTYVPDKVLKPLIDRVEADDHFQVVCPAREEEALGIVCGAQMAGMRS
ILLTQTSGFATLANVLASLPVPYEIPVVMVISERGALGDRQLVQVRVWQTMRPILDSLGIPHHTLTRADAVEFVAEEAIR
QAFATRSPAALILSPKLTKKSSD
>SEQF2266_AEE66336.1 hypothetical protein BPTD_0910 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSRICRRLAGALLGVVAACASQAQDTIRLGLQAVPTDELYQARDWAQPYGLKTEISTYSSAGDSLKAFLAGRVDVVSGG
AARLVTMAAKQPEVFYIVAANQYGGDRYGIIVGPEAPYKSIADLKGKKIGVVSGSGAHGTLMLYLEKNQLSPKDFRFVNM
KVEDIAAAVNRGVVDAGLAWEPHVALAEVNGAVKRIQSMKGVNESPNFILVNREYAGKHPEAVAKYIASMIDMSQLTAND
PKKAGEMIAAQLGKSGVSIPPKAMELAVSRIVVDPRIEDRLLEELPAIAEPMIAAGRINAMPEFGKLVQKSYYERAAALA
KARQ
>SEQF2266_AEE66337.1 inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPLAATTAHTVMIRPAARRTPGACAAYAEFGRFMLPIVTLLVFWEFAVRAGWIASNIFPSPSMIFARASEQLFSTGPEQ
GMLFKHIGASLYRAISAFLLSVLIGIPLGFCLGLMPSVHKWTSPILSVMLPLPAVAWTPILLVAFGQGDRTIITVCFLGA
FFPVLYSTIQGVKAVSKQSIWVVRSMGGKRRHVLLNVLLPSCLPALISGLKLGMAHSWRTLVAAEMLAAISTGLGYMIFA
ARSYMDVSTMFVGIALLALIGMAIEYGIFGMLEQRTIRKWHGASRIGGSK
>SEQF2266_AEE66338.1 inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSAMASSMPGGDGARVFDRLLVPLVSLGVPLLIWEFLARSGLVSDFLFPPPSSIFSTLWSDSGADVHGGQLYRHVYYSM
MRLLAGLALAAAVGTLIGILIGLTRWGRFVFKPLLSLFMPVPTLAWTPILLLLIGVDNKTTILIVFIAASFEVILNVVAG
IENMNVKVFWVARSMGASRLQIFFKVIVPGILPYLITGVRLGSGYAWRALIAAEMLAASSYGLGFMIYEASEFMDMTTIY
GGLIMIALLGYLIENVLMGAFEERTVGKWGVQVER
>SEQF2266_AEE66339.1 hypothetical protein BPTD_0914 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MREMSMNEETAAKLQGLTRRFAKLVHDLKFEDLPEEVLHKAKLIIRDGLGNQIAASAISEPARRVVEIVREWGGKPEATV
IGYGFKVPAPLAAMCNAMLGHGVELDDAHGSGLIKGGSVMIPSIMALAEANGKSGRDVITAIVAGYEVAVRIAKAINLGH
RQRGFHTTGTVSLFGAAAGGAKLLGCDEEGIAAAIGLAAMQSAGIQSYLDDPCMAKPFSPGKSAFNGTMAAVMASRGFAG
PRKALECKEGFFNAYCEDIRVDDLLDGLGERFVIMEVGFKPHAACRYAHGPIDLAQQFFEEGVRLEDVEKIDVRMCELSI
RQASKPKAPNLNAAMGSTEFGVALALAGGRNGLREYWDGFNDQRVHEAAADRTRLIMEPAYGVTGRQAAMAVTLKDGRVL
QRDQAEPKGEPSNPLTDQELTDKFTGLVDMVETSSQVSGEFSQRLMRLEDEKAIADLIGPLKAAGQTPALRAA
>SEQF2266_AEE66340.1 putative succinate-semialdehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNVTDGIAQRSMAEYTGILINGVWQAGEGSFPVLDKYTLVPAAEVFRASRRQVAQAVAQCKAAADRGAPAARERAAVLRR
AAGLLDTYRQDFEAVMMVEGGFTVHDISAEFTRAKVTLELSADEALRLTGSMVPFQASPGAEHKLGFTVRVPVGVVAAIT
PFNAPLNTVLHKVAPAFAAGNAVVLKPSAFTPLTSALLARVLLEAGMPPEFLAVVQGEGDDVGTWLLEEQDVAFYTFTGS
TRVGRIIQRAAGLRRTQMELGSIASTIVCADADLEAAVPRIANAAFRKAGQVCTSIQRLYVEDALKNELIERLSRYLDDM
PAGDPRAVATRVGPMISEAAATRAQAWIAEAVEAGARLVRGGERQGAVVQPAVLADVPESCSAWSTEVFSPMVSVGGFAR
FDDVLASANDTPYGLAAGIFTNDHARIMSAVRSLRFGTVHINETSSARCDVMPFGGVKDSGFGKEGPGYAAREMTEERLI
VFNQ
>SEQF2266_AEE66341.1 tricarballylate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDVLVIGGGNAALCAALSAREAGASVLLLEAAPREWRGGNSQHTRNLRCMHDAPQDVLVESYPEEEYWQDLLKVTGGIT
NEHLARLVIRRSSNCRPWMRSHGVRFQNSLSGTLHLARTNAFFMGGGKALVNAYYRSAAALGIQVRYDTPVAAIERDGER
FVAAVLEDGARIEAGSCVLAAGGFESNLDWLDQAWGTNENGERPALQFLIRGTRYNRGVLLRHMLDSGADAIGDPTQAHM
VAIDARSPLYDGGICTRIDCVPLGIVVNRAGQRFYDEGEDFWPKRYAIWGRLVAQQPGQIAWSIIDRKSIGRFMPPVFPG
TQADSIEALARKLGLPVEQTSRTIAEYNATCISGTFDHTVLDDCRTQGLTPAKTHWASPIVEPPFQGFPLKPGITFTYLG
LKTDDTAAVRFNDRPSPNLFVAGEMMAGNILGKGYTGDIGMAIGTAFGRIAGAGAAQHALAGRRQAA
>SEQF2266_AEE66342.1 citrate utilization protein B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTPYTESQVMARATIPIAVEDTGIEHDEAQARRILTICNACRYCEGFCAVFPAMTRRLDFVKEDVHYLANLCHNCGACL
HACQYAAPHEFDVNIPRTLAKVRLKTYSEYAWPRALGQLYDRNGLTLSLATAVGLSLFLALLFWLNGALWHAPLQGNFYA
IFPHNLLVAMFGLVFLYAALALGIGATRFWRGTRQDAAPPSSASGAAAEASFDVLTLRYLGGGHGEGCNEESARFTLWRR
RFHHLTFYGFMLCFAATGVATVYHYALGWQAPYPVLSLPVLLGTAGGIGLLIGPAGLYLLNRKRHADHGDPAQHAMDRGF
MALLFFVSLTGLLLLALRDTSWMAVLLAVHLGFVMAFFLTMPYGKFAHGIYRSAALLKNAVEKRTPGTLNVGAD
>SEQF2266_AEE66343.1 hypothetical protein BPTD_0918 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTADPEQLSLPCLYMRGGSSKGGFFLAADLPADPLERDATLLAAYGSPDARQIDGIGGADPLTSKAAIVARSGRPDADVE
YTFCQVDLTRAQVSTGGNCGNMLAAVGPYAVLRGLIPAREGQNRVRIYTTNTKQVVEASFAVRAGVPCVEGPTVVPGVPG
SGATVAIDFGDCAGSVSGTLLPTGRAADAIEIDGRPVRVSLVDAATPFVYVVAEDIGGDATATPQDIQNDSALMDRLEQA
RGWAAVTLGLVDDARKARETSPNVPRVMMISAPRDYVAGDTPIKAADINLCVRQLAMQKPHKALAVTGAVCTAIACRIPG
SVVQEQLRGDTGSEIRLGHPSGALSVDSQVDQTPAGPRVRKAALNRTARLIMAGQLFIAREKIRQLMQRMR
>SEQF2266_AEE66344.1 hypothetical protein BPTD_0919 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKPRTAPVASLSPLSFDHDHRSKKPRAVGLTSVIDFGPDGFGWAGPASLRDYLRCVADYIDYAKIYALNALILPEEIVR
ETVRIYRDADIKPYAGGILFEYAYLKNELDGYIRHLKKLGMPRIEVSENYLDFGDDERMRHIETMQKHGFEVIYEFGRKN
PTEPFSLAQLERVIRSNVAMGVHHTIIEQSEIDCVSASNPAILKDIAARDWFRNIFIEADPYAFPKGHATLLEKFGDGVN
LANITADQVLRLQGFRYGVGRAVNYSILSRI
>SEQF2266_AEE66345.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNTRSAYEKIIKDLQGVGFSDYEAKTYIALLLTPNATAYEISKEAGIPKANCYSVLEALRKNGAVQAVSENPVKYVAVD
PNRYFNQMVELTQLRCEDLKESLKNIGHLPQEDLVWSLNDAAAVGLHIEKMIGSARDTIRIKAADTTLEPHLPSLKKAAR
RGVKVLIILFGEDVRPFELGKNCKVYLHEGNGIRVGISHKLITVTRDYKEALVAEVGRDAYGSYTENKPIVTLADSLLRH
EIYFAEIFSCFGDEIQEKFGPALVKLRESYLPADQADALKVFLETADPARLAGKATAA
>SEQF2266_AEE66346.1 fumarylacetoacetate family hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQFVNLDHAGRAMAAVAHPHGYVLLPGPENGDSPELGERIRREEDLPALGAQALAAGTPLVAGSAAVLAPLLTRPGKIIC
LGLNYYDHAREGGRDKPTYPWFFLRAPSSLVAHGQAAWLPRVSGHFYYEAELAVVIGKRARHVMPEQALDMVLGYACFND
MSVRDYQKKTPQWTVGKNFDRTGGFGPALVLAGDLPPGGRGLGITCRVNGRTVQEANTDDMIFDVAEAIGIVTECMTLEP
GDVLVMGTPAGVGMARTPPLWLKPQDTVEVEIERVGRLCNPVLAEP
>SEQF2266_AEE66347.1 hypothetical protein BPTD_0922 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNEACTPTEASLDSYRNAQAWYGPQLDKHPEYWVHHLTGPELEQLDRAVRRADAGGKDITELSQDDFELGELGQRLQHVK
HEVLHGRGLYLIRGVPVEQYTMRQSAIAFWALGTNLGLPVSQNGKGHVLGHVANLGLDYADAAVRGYQTSNRLPYHTDSS
DIVGLLCVRPAKAGGLSSVVSSTTVWNELAARHPEHARTLLDSFHRTRWGEIPEGQKPYSSSPVFAPYQGRMYANYVRSA
IRKAQALPSVPRLSAQQNEALDCLDALTCDPALYLDMDFKPGDVQLLSNFTIFHSRTAYEDWPETERRRHLLRLWLACEG
GPPIPEPLLRRNGLASNGRPNGIEVPGVKPNAPLVPQ
>SEQF2266_AEE66348.1 hypothetical protein BPTD_0923 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLQRLFAVLLAASTHAAACAQTPTPAYPERTVRFLVPYTPGGNADMLVRLLSLKLTEYWDKPVVVENKPGASGTIAVNTV
AKAEPDGHTLVLGAAGNLVVANKLIKGLPYDPVEDLKAVSVVATPPFVLITAEQSRYQDVASLVADAGQRPEQITFGSAG
IGSANHLSGELLALMKRVKFTHVAYKGMGPALNDVVAGRIDFAFAPIPLVLPQIQAGKLRALAVSGTTRTQVLPDVPTVS
EAGVTGFESGAWFTVMVPKNTPDRIVDKINHDLKSAMQDADFIRKLAEEGAVPIGNTPAEASASLQSEMAKWGDLIDRLN
LQPI
>SEQF2266_AEE66349.1 LysR-type transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQKSAARGLGHIRIKHLRLLELVVQYGSLRKAAEGLHLSEPAASQMLREVESTFGVTLFERGRRGMRPNPFADVLVGRVW
VILRELHEMQADVAELEHRQGVSSDLGALPRCLHTLVPTTLVRLFGAGFRSRVRIAEGTSRQLLDALDQGAIDIAVTRLL
ESHAGLAGARNFDSAVLYEEAIAIVCSTDHPLSAVDTVTLDMLTQYDWVLPPSTSITGKLIEEEFVSAGLRPPVPKVEWL
TSASRLTLVQKSNFLGICPASVAAELQQGGRLHVLPVNPRVPLPPISVVWRRTKGDIAEIMDMKNALIECAAAMPGAMET
GAAVRAGEF
>SEQF2266_AEE66350.1 hypothetical protein BPTD_0925 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLKPAPNSIFAILLRSSWWISAAIALVLIASALASTRPTFTAVLFFAALPFLVIAAMAAWKQRNVPSAARVERATNAAR
AMSWETFSKVLQEGLRQDGCEVTVLQGGPADYVLRRKNRLAVVGAKRWKASRVGVQALQELNAVRETHGAHDAIYVTIGE
ISAPALAYAKANQIQFMAEAELTRLLPQLST
>SEQF2266_AEE66351.1 putative CoA ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAANIWPAIDAEAEIGDIRQWTTGAVLARRAERCPDRVFLRFAPDGRSYTFADLHRRTNGIAQAMIGYGIAQGEHVAML
SPNCPECLLGNLALGKVGAVSVPINTNAKASLLEYYLTHADCVTAIVADACMEAFAAVAPRLAQLRRVLVIGDAANARRM
LAGLPLAVEPFPADAASDEAVDNDVRFTDLAYLMFTSGTTGPSKAIMIPHGAAWHWGKHSVHYRYFLPEDVDYVCMPLFH
ANALLLSCTTAIVAGTSVVLDERFSASRFWERVRAFGVTRFNAIGAIGNFLWSQPASPVDLEHKVRICSLAPPPPFVHDF
ERRFGLRVIAGYALSDYGFGASLSPDAPPEKSLSLGRTCEGVAIRVVDEDDLTLPAGQVGEIVMRIEQPGAAPLGYYKMP
EATLAAWRNLWFHTGDRGYFDADGYLYLTDRKKDMIRRRGENISSYEVESVIALHPAVLQVAVYPLQSEHSEDEVAVTIM
LKDGQALDPDELVAFCQQQMAAHMVPRFVEFVDAMPLTPTNKIEKYKIKERAQADRSRLWDRERTPGARPGP
>SEQF2266_AEE66352.1 hypothetical protein BPTD_0927 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHSGNRITRRSFMLAAGALGLALAGAAQAAAFPQRPVAMIVPFPAGTAVDVVARFLATRFTQQWNQSVYVENRVGADGLI
GTVAAKMAPADGHTILYTGPPFLFVPDLNPQADYDPLKDFRPVARVTAPVYMLAATKSAPYSTFREMVETAKRTGSQLDV
GTVGAHGTATAAGMARAAGVDINIINYKTTAQLISDSIAGHVPMVLSALGSLNTLTHNGSLKALAVSGPQRSIIAPEVPT
AMEAGAKDFSVVSWNSAFVRTGTPDAAVDAIAQAIHKATLSPDFIEFCRAQGLEPAFEDGQAWLKTLPAERSYLNGLLRQ
SGLLAAK
>SEQF2266_AEE66353.1 hypothetical protein BPTD_0928 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQNSEQACGWQADPYALAYPESAPFWQAAETGTLLLPQCVRCECFHWHPRAFCPFCKAPDPRWTASSGQGEIFSFSVART
ATPYVVAYVRLAEGPLMLTNIVDCDPDSVRIGQRVSARFRPTQQGRLLPVFAPTHDHEKD
>SEQF2266_AEE66354.1 hypothetical protein BPTD_0930 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQEYRLVVFTNPTQGMEDQFDEWYVNQHLPDVLAVPGFKAGQRFELEQEQLKAGPHPWRFMTVFDIETDDLRHTFDTLIS
RVNTPLMPMSPSIAEHRIAYAYKAVTPKVQATPHGQQPK
>SEQF2266_AEE66355.1 hypothetical protein BPTD_0931 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRRHALKVLGAAALPALGWPMSAMAGEFPQKPIRFISPSPPGGVTDFLPRLLGQEMSKILGQPVVIENRTGGNQTIATN
YVAKAAPDGYTILLATSGALAVNPHLIADIPYQPLTDFEPISMLGGVASVVMATHASDARTLAQLLEAGRGKGRKPAFGH
TGIGTSPHLVLEALKQEAGIDIVDVPYKGTQQLFTDAKGGQFEFLCNNIGPSLPLIRNGDLRALAVTSRKRSPALPDVPA
IAETLPGFEVLGWMAAYVPAGTPADVIDRLAAALHASLATDEVRKALANFAIDAMPTSPQEAKDFLAAEYRRWGEVVRRS
GIRI
>SEQF2266_AEE66356.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLKSLRHFCVVATELNLRRAAEQLHIAQPALSVSIAQLESRLGARLFVRGRRGVTLTEAGALLLPEAMQILRHAERLPF
LARDAASGDVGTLRLAFVGSAPYRLLPQALPQLQRAHPGVHVELYEATTDRIVEGLHNRTFDLGIVRYPLDAFPGLELEL
VDEDGFCVALPHDHALVAAGEISLRDLADEPLLLPPREHSPPLRALMLEGFQAQGIMPRIANHMATQTATVLALVEMGAG
IALVPQSIVGRVGYRVAFRPLAPGSRFRTGLALLSSPDHHTTLADHFRRAIRQSIG
>SEQF2266_AEE66357.1 hypothetical protein BPTD_0933 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKYPIAIEPGSDTRAWGVVVPDLPGCFSAADEGIDQAIENAKEAIELWIETAIDSGAPIPPATSIANHQANPEFANWIWA
IADVDPAVLDETVERVNITIPRRILKRLDDRARAAGESRSSYIAHLAMTA
>SEQF2266_AEE66358.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66359.1 hypothetical protein BPTD_0935 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSKELIKQLERSGWTLRGVKGSHHVFTHPDRPGHISVPHPKKDLGIGLLNSILKAAGLK
>SEQF2266_AEE66360.1 putative sugar efflux transpoter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLPIILLSAAGFTILTTEFLIVGLLPPLARDLQVTVSQAGLLVSLFAFTVAAAGPVLTALLANLERKRLFVWVLVLFGL
ANALAAVSPNIWVMAFARFVPALALPVFWSLASATAVELVGPAYAGRAISIIGFGIVAATVLGIPIGVLVSDAFGWRAAF
AVLTAVAWAKALLLAYFPKPRTGRQNQRLSTQLRILRDPRLLGHVMLSLLVFTGMFTAYTYLADMLEHLAGFDGKVVGWT
MMAFGGAGILGNWLGGRLVDRSPLGATILFSLIMTAGLLFVAQVMQAPYWLALALALWGVAQAALLTVCHVRVIKAAPQA
PAFAASLNISGANIGIGLGAAVGGHFIDSRGLASLGTVAAVIVLAAVGLAIALVLSRRPSTPRPAAPAPGIEP
>SEQF2266_AEE66361.1 putative phosphoglycolate phosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSALILFDFDGTLADTAPDLAAAANRQRTRKGLEPMPYEALQPMASQGARGLLRAALGLLPDHPDYEPTRLQFLEDYAAE
STVHSRLFPGIADLLEDIAQRGLSWGIVTNKVTYLTLPIVEHLGLTRDSAVLVCGDTTAHAKPHPLPLLHAAEQAGFEAG
RCVYVGDDLRDIQAAHAAGMPAVAAAYGYVGMEEDVTTWQAEACAASPRELWSAIEPLLPTRATA
>SEQF2266_AEE66362.1 3-demethylubiquinone-9 3-methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTATQSSAPGVNVDQAEVEKFSALAARWWDPESEFKPLHAINPLRLGWIQETAGSLSGKRVLDMGCGGGILSESMAVAG
AQVTGIDLAEKSLKIARLHGLESGVKVDYRAVPVEELAAEQPGQYDVVTCMEMLEHVPDPASVVRACAALAKPGGWVFFS
TLNRNPKSFLFAIVGAEYVLRLLPRGTHSYDSFIKPSELATSARQAGLEPTGMRGMEYNPITQVYSLSANTSVNYLMSTR
K
>SEQF2266_AEE66363.1 outer membrane protein A precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKPSKFALALAFAAVTASGAASAQTVDNWRNPFGDVWKNGTNELCWRDAFWTPATGIPGCDGVPVAQKEKSAPMAAKVV
FNADTFFDFDKSTLKPEGRQLLDQVAQQAGTIDLETIIAVGHTDSIGTEAYNQKLSERRAAAVKTYLVSKGIDPNRIYTE
GKGELQPIASNKTREGRAQNRRVEIEIVGSRKN
>SEQF2266_AEE66364.1 DNA gyrase subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSFAKETLPVSLEEEMRRSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELNNDWNRAYKKSARIVGDVIGKYHPH
GDQSVYDTIVRMAQDFSMRYMLVDGQGNFGSIDGDNAAAMRYTEIRLAKIAHELLADIDQETVDFGPNYDGSEQEPLLLP
SRLPNLLVNGSSGIAVGMATNIPPHNLQEVVDGCLYCLRNPECSIDELIELIPAPDFPTGGVIYGITGVREGYRTGRGRV
IMRAKTHFEDMEKGNRQAIVVDAIPYQVNKKTLQERIAELVNDKKIEGISDIRDESDKDGMRLVIELKRGEVPEVVLNNL
YKNTQLQDTFGMNLVALVDGQPRLLNLKQLIEYFLQHRREVVTRRTVFQLRKARERGHVLEGLAVALANIDDFIAIIKAA
PTPPVARQELMARSWDSSLVREMLARVDGDAAGGVAAFRPDDLAPEYGLQGDGNYRLSETQAQEILNMRLQRLTGLEQDK
IIGEYKDVMATIADLLDILARPDRITTIISEELQAIKAEFSTSAKDTRRAEIEVNATELDTEDLITPMDMVVTLSHGGYI
KSQPLSEYRSQKRGGRGKQATAMKENDWVDQLFIANTHDYLLCFSNRGRVYWLKVWEVPQGTRNSRGKPIVNMFPLADGE
KVTVVLPVKEFSEDHYVFMATSRGTVKKTPLSDFSNPRKAGIIAVDLDDGDYLIGADLTDGKHDVMLFSDAGKAVRFDEN
DVRPMGRNARGVRGMMLEEGQTVIALLVAGDETQSVLTATENGYGKRTPITEYTRHGRGTKGMIAIQTSSRNGRVVGAVL
VMPSDEIMLITTGGVLVRTRVAEIREMGRATQGVTLISVDDGSSLSGVRRVVESDADADDEDGGEEGGEEGGDQGGDDTG
AQGKDSEPTEPTE
>SEQF2266_AEE66365.1 phosphoserine aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMARPWNFSAGPSALPEAVLQQAAAEMLDWHGSGMSVMEMSHRGKHFVQICDEAEADLRELLGLPADYAVMFMQGGGLGE
NAIVPMNLMGRRSTPAADFVVTGHWSTRSHKEAGRYGDAQIAASAAEATEIDGQAQSSWTWLPPVDTWRVRKDSAYLHLC
SNETIGGVEFTEWPDPASLGAPDVPLVVDVSSHFLSRPLDIARAGLVFAGAQKNAGPAGVTVVIARRDLLGHALPICPSA
FDYANVAADHSRYNTPPTFAIYVMGLVFKWIKAHGGVRGMEEANRAKAELLYGYLDGSAFYRNPVQASVRSRMNVPFVLR
DESLNDAFLQGAEAAGLMQLKGHKSVGGMRASIYNAMPLAGVQALIDYLKEFERRHG
>SEQF2266_AEE66366.1 p-protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDDSLQDKLRPLRDRIDAIDAQILDLLSQRARTAQEVGSVKHAAHADGPVLRPEREAEVIRRLQYSNPGPFPKAAVAAVW
TEIMSACRGLERGMTVAYLGPQGSFSEQAALEHFGHSVQQLPCPSFDEVFRAVEAGQADVGMVPVENSTEGAVNRSLDLL
LNTPLTILGERSLVIRHCLMSQSGTMDGIKTISAHPQALAQCQGWLTRHYPDLNRVAAASNSEAARVAAEDPTVAAIAGE
VAAPAWNLRVVAAGIQDDPQNRTRFLAVGHIEPLSSGKDKTSLILAVPNRAGAVYDMLAPMAANGVSMTRFESRPARTGQ
WEYYFYVDVLGHRDDANVARALAALQAQVAFFKVLGSYPAQ
>SEQF2266_AEE66367.1 prephenate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSANNSANGQGPLVPVLAVAGVGLIGGSFAAALRHAGQVGTILGVGRNPASLARARELGLIDEAVSPEEAAARADLVLLS
TPVGGLGAMLARMRDHLRPGCLLTDAGSTKSQVVMAARQALGEQVSCFVPGHPIAGGERTGPEAADAGLYVRRAVVLTPL
PENAAASVARVRACWHACGAHVVEMDDAAHDRLLASVSHMPHFLAAVYMAQVAGSDDAQARMDLAGSGFRDFTRIAAGSP
EMWRDIFLSNQAAMQSELAALRRVLDEAEQALGAGDGARLQALLERAAHARRNWRKDSK
>SEQF2266_AEE66368.1 3-phosphoshikimate 1-carboxyvinyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGLAYLDLPAARLARGEVALPGSKSISNRVLLLAALAEGSTEITGLLDSDDTRVMLAALRQLGVSVGEVADGCVTIEGV
ARFPTEQAELFLGNAGTAFRPLTAALALMGGDYRLSGVPRMHERPIGDLVDALRQFGAGIEYLGQAGYPPLRIGGGSIRV
DGPVRVEGSVSSQFLTALLMAAPVLARRSGQDITIEVVGELISKPYIEITLNLMARFGVSVRRDGWRAFTIARDAVYRGP
GRMAIEGDASTASYFLALGAIGGGPVRVTGVGEDSIQGDVAFAATLAAMGADVRYGPGWIETRGVRVAEGGRLKAFDADF
NLIPDAAMTAATLALYADGPCRLRNIGSWRVKETDRIHAMHTELEKLGAGVQSGADWLEVAPPEPGGWRDAHIGTWDDHR
MAMCFSLAAFGPAAVRILDPGCVSKTFPDYFDVYAGLLAARD
>SEQF2266_AEE66369.1 cytidylate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAIFASAGAAPVITIDGPTASGKGTIAHRVAKQLGWDVLDSGALYRLTALAALRRGLPATDEPAVAAVAQALDVRFDGPH
VYLEGRDAGHEIRQEEVGNYASRIAAYPGVRQALLERQRAFRQPPGLVADGRDMGAVVFPDASLKIFLVADVEARAQRRC
KQLIEKGISANLDDLLRDMRERDARDTQRAVAPLAPAADAHVLDSSGLTIEQTVQAVLDFWCA
>SEQF2266_AEE66370.1 30S ribosomal protein S1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSVSTSAILGGENFADLFAESLKSQDMKSGEVISAEVVRVDHNFVVVNAGLKSEALIPLEEFLNDQGELEVQPGDFVSV
AIDSLENGYGDTILSRDRAKRLSAWLQLEQALENGELVTGTITGKVKGGLTVMTNGIRAFLPGSLVDLRPVKDTTPYEGK
TLEFKVIKLDRKRNNVVLSRRQVLEASMGEERQKLLETLHEGAVVKGVVKNITDYGAFVDLGGIDGLLHITDMAWRRVRH
PSEVLQVGQEVEAKVLKFDQEKSRVSLGVKQLGEDPWVGLARRYPQGTRLFGKVTNLTDYGAFVEVEAGIEGLVHVSEMD
WTNKNVDPRKVVTLGEEVEVMVLEIDEDRRRISLGMKQCRQNPWEEFATNFKRGDKVRGAIKSITDFGVFVGLPGGIDGL
VHLSDLSWTESGEEAVRNFKKGDELEAVVLGIDTEKERISLGIKQLEGDPFNNFVATHDKGAVVPGTIKSVEPKGAVITL
SVDVEGYLRASEISSGRVEDATTVLKAGENIEAMIVNIDRKARSIQLSIKARDNAETAETIQRMSEASASSGTTNLGALL
KAKLDQQRNDG
>SEQF2266_AEE66371.1 integration host factor beta-subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKSELIAALAARYPQLAARDTDYAVKTMLDAMTQALASGQRIEIRGFGSFSLSQRSPRIGRNPKSGEQVLVPGKQVPHF
KAGKELREWVDLVGNDQGDDSSNGSSDPLQSVMDMHAMH
>SEQF2266_AEE66372.1 hypothetical protein BPTD_0948 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRYLVWALRLLVFVAVLMFALKNTNPVAVTFYADYVVHDVPLIVVMLVVFVVGALFGLLLTVPAAMRRRREALRLRREVE
RLQAAASGTPPAVTPEAVAPMSPL
>SEQF2266_AEE66373.1 tetratricopeptide repeat protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDFEPWWLIFVPVLFALGWLAARFDFRQMLRETRTLPDSYFRGLNFLLNEQPDRAIDAFVEVAKLDPETTELHFALGSLF
RRRGEMERAIRVHQSLLSRSDLPVAEREHAQHELAQDFLKAGMLDRAEGAFEQLKDTRYALPALRSLIRIYESEHDWPRA
IEAVKTLHGLVDEPVPQIVHYYCEQAQAALTAKPVDFDAAHAALDAADHAAGMVERGNAPAKASLVRTAMLRARLAALEN
DPKRERLYLESILTQAPEFAGLVAEALLTNYRQADQAAAGLAMLQQQYQRHASLDLFNVVFRELRVQQGSAPAWAFAREA
LRHHPSLLGLDRLLEAELASPGAPADAGPVTGADLTLLRSLIHKHTQRLDRYACRSCGFQARRFYWQCPGCNSWETYAPR
RLEELE
>SEQF2266_AEE66374.1 ADP-heptose synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQYPAERIARARVLVVGDVMLDRYWFGEVDRISPEAPVPVVRVARREDRLGGAANVARNVAALGAQVTLIGVVGADEVG
LRIERMAAEEGVRTDLVSDTEHPTTLKMRVLGRQQQLLRVDFEQHPEPAALDGISAAVARQLAQHDIVVLSDYAKGVLDR
VESIIAAAVGHSLPVLVDPKGDHYERYRGATLVTPNRAEMREAVGRWKTEDELAERAQRLRLDLDLEALLVTRSEQGMTL
FTDAGRDHADAAAHEVYDVSGAGDTVLATLAVMRAVGLSWGDAMRWANRAGGIVVGKLGTSVVTAAELAGEST
>SEQF2266_AEE66375.1 ADP-L-glycero-D-manno-heptose-6-epimerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIVVTGAAGFIGSNLVRGLNRRGIQDIIAVDDLTDGDKFRNLVDCSIADYLDKDEFRERVRGGNLPALRAVLHQGACSDT
TERNGRYMLDNNYRVTLELFEYCQAERVPFLYASSAAVYGGSSVYVEDPANEHPLNVYGYSKLLFDQVLRTRMDSLTAQV
VGLRYFNVYGPHEQHKGRMASVAFHNMNQFLAEGHVRLFAGWDGYEDGGQSRDFISVEDVVAVNLHFLDNPDQSGVFNCG
TGRAQPFNDVAAAVVNTLRAERGEAALPLAELVKKGLLRYIPFPDDLKGRYQSYTQADVSRLRATGFSAPMRDVQTGVSE
YVRYWRALK
>SEQF2266_AEE66376.1 hypothetical protein BPTD_0952 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPFLHDPVARCANAPAWPLVGRGRPWRPRPPGAAARAPAGKAPVGRKPASEPLARWLVMAGCALAAAPAHALDVNTATV
DQLETVRGVGPRTARVIIEERQRGGRFLSLEDLSERVSGIGHKKMQSLQAAGLTAGPAAPAAGARPEARPAGGPRAKAAA
GR
>SEQF2266_AEE66377.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66378.1 cysteine synthase B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTPTYPTIEQTVGNTPLVRLQRIPGAAGQARGNVILAKLEGNNPAGSVKDRPALSMILRAEERGEIHPGDTLIEATSGN
TGIALAMTAAMRGYRMVLIMPDNLSLERRAAMTAYGAELILTPAAKGGMEYARDLATAMQAEGKGKVLDQFGNPDNPRAH
IEGTGPEIWNQTDGRVTHFVSAMGTTGTIMGVSTYLKSRNAAVQVVGAQPAEGSQIPGIRKWPEAYMPKIFDRALVDAYE
SIAQAEEETMARRLAAEEGIFAGISSAGALVAALRVAERVENATIVFIVCDRGDRYLSTGVFN
>SEQF2266_AEE66379.1 membrane-bound lytic murein transglycosylase B precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFNCRRFLQIGTLSALLAGCATSSQTPQAQHLPAQAATGQADRVRIGPDKPVSSDEGPATLTPTGELRPDVRAFAEQLAA
QRELPLPQVLASLESTRYNATVARLIAPSGASGKKIWRSWLTYRGRFVEPKRIAWGVEFWNANQDLLNRAAQRYGVPASI
IASIIGVETLYGRNVGNFRVVDALATLAFDYLDPAKPERADMFRGQLGDFITLALQDKLDPETRGSYAGAIGMPQFMPGS
IMRYAVDGDDDGHIDLTNSVADAVMSVGNFLVEHGWQRGLPVFAPVALPADPAPLVAGGLTPTLDWNGLQAAGARPAAGA
GRGAWQEHPMGIVDLVEEARGTVQYRTATPNFFALTQYNRSYFYATAVADLAAELQARTGY
>SEQF2266_AEE66380.1 histone deacetylase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
METMYLTHPSCRLHEMGDWHPESPQRLDAISDQLLASGLLPYLQERQAPEASRADILRVHTPAYLDSLRAHQPEHGYYAI
DADTSMNRHTYEAALRAAGAGVAAVDAVLGGEAITAFCSVRPPGHHAERDHAMGFCFLNNVAIAARHALDFHGLQRVALV
DFDVHHGNGTEHAFAGDPRVLMCSFFQHPFFPNSGADDPAPNMLNVPVAAYTGGASIRTIVREQWLPRLHAHRPELILIS
AGFDAHREDDMAQMGLVEADYAWITDRLVEVADQHCQGRIVSTLEGGYNLSALGRSVVAHIRSLSKL
>SEQF2266_AEE66381.1 electron transfer flavoprotein beta-subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKVLVPVKRVVDYNVKVRVKSDQTGVDIANVKMSMNPFDEIAVEEATRLKEKGAVTEVVAVSCGAAQCQETLRTAMAIGA
DRAVLVQTDAELQPLAVAKLLKALVDKEQPQLVILGKQAIDDDANQTGQMLAALLDWPQATFASKVELGDGQVTVTREVD
GGLETLSLNLPAIVTTDLRLNEPRYVTLPNIMKAKKKPLETVSPQDLGVDPAPRLKTLKVSEPPARQAGIKVPDVATLVD
KLKNEAKVV
>SEQF2266_AEE66382.1 electron transfer flavoprotein alpha-subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTLVIAEHDNAQLKGATLNTIAAASRLGGEVHVLVAGSGAQAVAEQAAQAARVSKVLLADAPQLAEGLAENLAAQVLAV
AGGYSHILFAATASGKNVAPRVAAKLDVAQISDIIGVESADTFQRPIYAGNAIATVQSGDAVKVITVRTTGFDAVAAQGG
SAAVEALDAVADSGLSRFVGREVAKSDRPELAGARVVVSGGRGLGSAENFKILDPLADKLGAALGASRAAVDAGYAPNDW
QVGQTGKIVAPQLYVAVGISGAIQHLAGMKDSKVIVAINKDPEAPIFGVADYGLVGDLFQVVPELTGAL
>SEQF2266_AEE66383.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTYATPLQDFRFALNELAGLEEILKLPGFEEVTPDLVDAILEENARFVQQAIAPLNVAGDTKPPVWNDGQVTTTPGFSQG
FADYTAGGWQGLQHPQKWGGQGLPKVVAAPAGENIQAASLAFSLCPMLTDGVIEALLTVGSEAQRQTYVPKLIGGQWTGT
MNLTEPQAGSDLAQVATRAVRQDDGSYRLSGQKIFITYGEHDLAENIIHLVLARTPDAPAGVKGISLFIVPKYLVNEDGS
RGKRNDVWCASLEHKLGIHGSPTAVLLYGAGKGEVGEGAVGYLVGEANRGLEYMFIMMNAARYSVGQQGIGVSERAYQHA
QAYARERVQGRAIEGSAAPVTIAHHPDVQRMLLTMRALTEAARAVSYVAAAAHDKGTHHPDAEVRARNRAFYEYLVPIVK
GFSTESAVEVASLGIQVHGGMGFIEETGAAQHYRDARILPIYEGTTAIQANDLVGRKTLRDGGATAHASIAAMRDTLKAV
AAEAQRADTADHTALRVLRDNFDQAIQSYEGAVEFILAHAASNVRAVYSSSVPYLMLAGVVHGGWQMARAALACRRHLAA
GSGDAFHRHKLGTALFYGAHILPRALALAAAVRAGDVADSCGSMADIA
>SEQF2266_AEE66384.1 antioxidant protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGQLRLGDTAPDFEQKSSIGPLRLYDYLGDSWGVLFSHPADFTPVCTTELGYTAKLAGEFAKRNVKVLALSVDPVDSHTK
WIDDINDTQSTTVNFPILADDDRKVSELYDMIHPNANATLTVRSVFVIDPAKKVRLTITYPASTGRNFDEILRVIDSLQL
TDSHSVATPVNWKDGEDVIIVPSLKDEAVIKEKFPKGYKALRPYLRITPQPNK
>SEQF2266_AEE66385.1 sulfate-binding protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRNTAGIRGAIVALATVFSLGLPWAVQAQDKQTLLNVSYDPTRELYRAVDEAFIKEYQARAGVDLTVRQSHGGSGRQAR
SVIDGLDADVVTLALAYDIDAIADRGLLPQDWQKRLPRNSSPYTSTIVFLVRKGNPRQIHDWDDLVKDGVQVITPNPKTS
GGARWNYLAAWAYALARNEGSEAKAREFVGQLLSHVPVLDTGARGSTTTFVERGVGDVLLAWENEAFLAREELGPDKFDI
VVPSLSILAEPPVAVVDKVVDRKGTRAAAQAYLEYLYTPAAQEIIARNFYRPTDAGVAAKYASRFPKLKLVTIDDPIFGG
WRKAQKDHFSDGGTFDQVYQPQRK
>SEQF2266_AEE66386.1 sulfate transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIEVRGLSKRFGAFRALDEVSLHIETGELVALLGPSGCGKTTLLRIIAGLESADAGSVLFAGEDATEVDVRQRQVGFVF
QHYALFKHMTVFENVAFGLRVRHRSQRPSEARIRAKVLDLLGLVQLDWLADRYPAQLSGGQRQRIALARALAVEPRVLLL
DEPFGALDAKVRKELRRWLRRLHDELHVASVFVTHDQEEALEVTDRVVLMNAGRIEQVGSPREVWERPATPFVYGFLGDV
NQLHGHATRGVWRLGEVALPAPDLPEADNQRAIAYVRPHDIDLARAGTAAPGIPVRLNHVYLAGPSAYLELARQDDQAII
EAQVPEPLFRSLGLKEGEALLAQPRRARVFAVQP
>SEQF2266_AEE66387.1 sulfate adenylyltransferase subunit 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAVMTRSHLDWLESEAIFILREVAAECARPALLFSGGKDSVVLLRLAEKAFRPGRFPFPLLHIDTGHNYDEVISFRDAR
AAELGETLLVRSVEDSIARGSVALRRETDSRNAAQAVTLLEAIEELGLDACIGGARRDEEKARAKERIFSFRDEFGQWDP
KAQRPELWNLFNTRVHRGENMWVFPISNWTELDVWQYIQRERLALPSIYYSHTREVVRRKGLLVPVTRLTPPAEGETVEQ
LAVRFRTVGDISCTCPVASDAADPAAIIAETAVTDITERGATRMDDQTSEASMERRKREGYF
>SEQF2266_AEE66388.1 hypothetical protein BPTD_0968 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGRGAVTNVPHRFQQADRVRVDDGWANPDYTAGSDAAALPSVAEALGQGGRRAIPIAVEGADASPNTCAQAPAPRTIVQ
AEEARKMLSRNDSPDIPFDVAANPYRGCEHGCVYCYARPTHAYLGYSPGLDFETRLVAKANAVAALRAELARPGYRASPI
NIGSATDAYQPIERTWRLTRGMLELLLQTRHPLTVVTKNALVERDLDLLQDLARQKLVTVFVSITTLDAAMARTLEPRAS
APYRRLQTVRTLAQAGVPVGVLVAPVIPFINDESLEHILQEASAAGACYASYTVLRLPWEVKEVFETWLQAHFPDRAQRV
LHRIEDLRNGRRNDTAFGSRMRGTGIWADLLRQRFALATRKLDLNRHRPELDTHRFVPPLEPGLPPARGRREARAQPGQL
ALF
>SEQF2266_AEE66389.1 hypothetical protein BPTD_0969 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGRTLGALRRLARAWAGAAVPQRKWPFPPTPPGQAQPCTPCTDSQPRSVQAVQPAQARALHAQAELSGAATQAATQVLS
TKAKIIDVLLVAVWGAMIPALMWLGAAGGF
>SEQF2266_AEE66390.1 hypothetical protein BPTD_0970 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSYTSLILVVLAAMAHAAWNLLAKRAAMVGPMFVFAYGLAATILYAPWVIWVLAHDGMVWSWPVVLCILASSMLHLGYSL
CLQRGYQVADLSVVYPIARGTGPLLSTMGAFTLLSEPTTTTGIAGMLCVVGGVLLIATQGRLGMFRQAQAWIGVRWGVVI
GLFIAAYTVVDAYGVKILLIMPVLFDWFTCATRTLMMTPHVLRRRAQYWPAMRGYWHLAIAVGVLSPLGYILVLYALRNG
APLSLVAPAREMSMMLGTLAGMFLLREKVGIGRLAGCLAILAGVVLLGSS
>SEQF2266_AEE66391.1 50S ribosomal protein L19 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLIAILEQEEIARLTGGNAVTEFAPGDTVVVSVNVVEGTRKRVQAFEGVVIAKRNRGLNSSFIVRKISSGEAVERTFQL
YSPQIAGIEVKRRGDVRRAKLYYLRSRSGKSARIKEKLVLKKAKSA
>SEQF2266_AEE66392.1 hypothetical protein BPTD_0972 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQPWETANQGLARVDERLLTPPELRSSLRPADHWRLDPLCAAEPRAPGREGSLVAAAVLIPLVMRADGVRVMLTQRAAH
LHDHAGQVSFPGGRIEVSDATPVAAALREAQEETGLPVQQVEVLGSMPQYFTATGFAITPVVSLVQPDFELAPDAFEVAE
VFEVPLSFLMDPANHRLYRAALPDGYVRQYYAMPWQRYFIWGATAGMLRNLYQTVREALPG
>SEQF2266_AEE66393.1 oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKYRKLGHTDLDVSLIGLGTMTWGEQNTEAQAHEQLDYALAHGINLVDAAEMYPVPPKPETQGRTESCIGSWLARTGRRH
EVVLASKAAGPVRDAKRPSHIRDGKTFLDRKNLTQALDASLKRLQTDYLDLYQLHWPDRTTNTFGKLAYPWVDDAHTVPI
EETLEVLQDFVRAGKVRHVGLSNETPWGVARFLQAAEKHGLPKVATIQNPYNLLNRIFEIGLAEFSHREGVGLLAYSPLA
MGILSGKYLDGARPEGSRLALFTRFTRYSNPQAEAAARDYVMLARDHGLAPAQMALAWVNQRPFVSSNLMGATTLAQLKE
NIESVEVTLSDEVLQGIEAIHARQPNPAP
>SEQF2266_AEE66394.1 hypothetical protein BPTD_0974 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE66395.1 hypothetical protein BPTD_0976 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTPIPLARGWLPAAPSTLDPLRKYWLFRPGALTAGLRQLGHVRLRVLAEYPTGAPRDEADGMRIAAQSPVWVREVLMSI
DGVDSVVARSLTPLRASHGVWQGMRRLLTRPLADMLYHDPGIHRSVFVCRRLAAGVPFHATAIARAPAGGPEPALWARRS
AFWRAGQPLLVAECFLPAFWSLARAPVAPR
>SEQF2266_AEE66396.1 putative RNA pseudouridylate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEKVRISKLMSERGLCSRREADSYIERGWVRVDGVVVSELGARALPDQVITLERAAAARQTARVTILLHKPVGYVSGQAE
KGYTPAVALIDARSRYAGDRAPQRFERGQLQGLAVAGRLDIDSQGLLVLTQDGRIAKKLIGEDSEVDKEYLVRVQGRLSE
AGLALLNHGLSLDGKPLRPAQVRWQNADQLRFVLREGKKRQIRRMCELVGLRVVGLKRVRIGRVSLGDLPAGQWRYLRAD
ERF
>SEQF2266_AEE66397.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRLQGMELFVEVARTLSFGRAAENLAIPKSTLSRQVAELERSVGLRLLSRTTRRVELTEAGQLYFERCQRIVAEARIAH
EELQNLVETPSGPLRVNMPADFGTDFLSEAFTEFSRRYPEVTFYLDLASPEHAERVFQTCDVSIEIGDLPDSTHIARLLG
VLPAHLYASPDYLARHGEPQHPDDLPRHECIQFRAGTGRVTRWPLNSGERHVEITPGNRFSVNSVSMVRNLATLGAGIAI
LAPMGNVREDIESGRLKRILPDWLAGPFPVYAVTDTRMLPAKTRIFVEFLMERLSNKTLAGQNNPAFLNLR
>SEQF2266_AEE66398.1 acriflavine resistance protein B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKFFIDRPVFAWVIAIVLMMAGALSILSLPVAQYPNIAPPAISINVTYPGASAQTVQDTVVQVIEQQMNGIDNLQYISS
ESNSDGSMSITLTFSQGTNPDTAQVQVQNKLAVAQPLLPLEVQQQGIRVTKATKNFLIVAGFVSTDGTMDKSDLADYVAS
YIQDPISRTPGVGNFQLFGAPYAMRIWISPEKLVNFGLTASDVTTAIREQNVQVSSGQLGGQPAVRGQQLNATVIGPSRL
QTPEAFGRILLKVNRDGSQVRLKDVASIELGAQTYAIDSYYNGKPASGLAIKLASGANALDTAQAVRETINGLKPYFPPG
MDVVYPYDTTPFVSLSIEGVVKTLFEAVLLVFLVMYLFLQNVRATLIPTLAVPVVLLGTFGVLAAFGYSINTLTMFGMVL
AIGLLVDDAIVVVENVERVMAEEGLSPRQATRKSMGQITGALIGIAMVLAAVFVPMAFFGGSTGVIYRQFSITIVSSMVL
SVVVAIVFTPALCATMLKPIPKGHHGSKKGFFGWFNRTFERSSQAYANNVARSMGRTKRLLLIYVVILLGMAWMFMRIPT
AFLPDEDQGILFAQVQAPAGATSERTQATIDAAVKYLLEDEKESVASVFAVNGFSFGGRGQNAAILFIKLRDWNERKGAE
HRAAAVAARANAKFRAELRDAQAAVFAPPAVMELGNATGFDFQLQDRAGVGHEKLLAARNQLLQEAGASPMLVAVRPNGI
EDAPQYQLDIDREKARALGVSITEINNTLATAWGSSYVNDFIDRGRVKKVFVQGEASSRMLPQDLDKWYVRNNAGDMVPF
SAFSSAQWTFGPQKLNRYNGVPSYNIQGQAAPGYSSGDAMAEMERLADKLPLGIGYDWTGLSFEERLSGAQAPALYAISL
IVVFLCLAALYESWSIPTAVMLVVPLGVVGALLATMTRGLSNDVYFQVGLLTTIGLAAKNAILIVEFAKEHYEEGASLTE
AAVHAARQRLRPILMTSLAFILGVVPLAISTGAGSGSQNAIGTGVIGGMLTGTFLAIFFVPLFFVLTLRLFKVKRASENR
EDDDPHGGAQPATHGGQPQ
>SEQF2266_AEE66399.1 outer membrane lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPVVMRTLLSLAVATALAGCSLAPTYERPQAPVDAAYPSGPAYGAPGQAAAGAPAAADVGWRDFFGDPLLQELLALSLA
NNRDLRVAALNVEAARLNPSGQAGISRSYQVGASLSTWELDLFGRIRSLSEQALQLYLAQDETRLATQLTLVAETANAYL
TLRADQELLALTRQTLAAQQESYKLTRQSYDLGVATELDLSQAEISLRTAERNLSQYTRMAAQDRNALVLLVGQPLPAGI
GAQLDQAVALPDGVVLADLPAGLPSDLLARRPDIRAAEHQLQAANASIGAARAAFFPRISLTGSAGTASASLGGLFDAGS
GAWSFAPQISVPIFAGGALRASLDLAKIQKDIGIARYEQAIQSGFREVSDALAGRGTLQEQIRSQELLVQANQRAYDLSQ
QRYQQGIDNYLSVLDSQRSLYTAQQTLVETRLARLSNLIQLYKALGGGWSERTVAAAQAG
>SEQF2266_AEE66400.1 hypothetical protein BPTD_0982 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIIIMIIVGFVVGLITRAIMPGDQNMGYIMTTILGIIGSVVAGFLGQQLGWYAPGEPAGWIGSVVGAIIVLFVVGLVAK
KRA
>SEQF2266_AEE66401.1 hypothetical protein BPTD_0983 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYSPLSGRAWRGLLLAMLMLLAACSERSADWSLYNVKGHLPDLKFSLPGAHGKTVSSDDLKGKTVLLFFGYASCPDVCPT
TMAQLTAVLQQLGEQARDVRILFVSVDPHRDTPDILQAYVNEFNSNAIGVTGNEKQIADLARRYRVAYQIEKPKPGDDAD
IYDVTHSRGVYIFDNQGKARLLASDTDTIDTMVKDLRQLIAQTQ
>SEQF2266_AEE66402.1 oligopeptidase A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQNPLLAPVADLVDYAAVKPEHIVPAVQALVDIARAAVEHAADPALPATWDAVVAPLDSASERLWRAWSVAGHLNAVVN
TPVLREAYNAALPLVTEFSTWVGLHEGLYRQYQRLQAAEDFAAWPPVRRRVVELALRDFRLSGVELQGAARERYAEISDR
EAQASQKFSENVLDAIDAWSLLVDDQARLDGIPADVLAAARKAAEDDGATGWKLTLKMPCYLPVMQYARDRALRETLYRA
YGTVASEHGDAAYDNSPLIEELLQLRADEAGLLQYPTFAALRLQTRMARDATEVVDFLRDLARRAKPYAERDLAELQAFA
AGELGLAELQPWDVPFAAERLRESRYAYSEDEIKQYFTEPRVLAGLFEVIETLFDVRLREVPVSSWHADVRGVRVESPDG
ATLGHLYLDLYARAGKQSGAWVDSERSRRRVQGDLQTPVAYLTCNFSRPNGDKAALLTHDDVITLFHETGHALHALLSEV
DEPGAAAFASVEWDAIELPSQFMENFCWEWSVVQKLSAHVETGQPLPRDLYDRLVAARNFQSGMQTVRQIEFALFDMMLH
DRPQGAPIADVLALLQQVRQEVAVLFPPAWHRLPHSFSHLFAGGYGAGYYSYKWAEVLSADAYEAFEEAARQGEPAATTL
DGATGARFRKEILAVGGARPAADSFRAFRGREPRIDALLRHSGMQA
>SEQF2266_AEE66403.1 FolD bifunctional protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTARIIDGAALSQRIREEVAQRVQALTAKGVRPGLAVVLVGDDPASQVYVRNKVAACEKAGLHSVKEQYPADLTEAQLLE
RIDALNRDPSIHGILVQLPLPRHMDAHKVIEAIAAEKDVDGFHISNAGLLMTGQPLFRPCTPYGVMKMLESEGVALRGAE
AVIVGASNIVGKPMAMLLLQAGATITICNSKTRDLGAQTRRADVLVVATGKPGMIDGSMIKPGAVVIDVGINRGADGKLC
GDVDMASAREVAGAISPVPGGVGPMTIAMLLVNTVEAAERAAA
>SEQF2266_AEE66404.1 two-component response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTPHLSSTVFIVDDDEAVRDSLRWLLEANGYRVRAYASGENFLDEYDASQIGVLIADVRMPGMSGLELQEQLIARNAPL
PIVFITGHGDVPMAVSTMKKGAVDFLEKPFNESDLREIVARMLEQAVQRISKFQAQKDHEAMLARLTAREQQVLERIVAG
RLNKQIADDLGISIKTVEAHRANIMEKLEVTTVADLMKVALAKPEAHT
>SEQF2266_AEE66405.1 tw-component sensor kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSPPKSNIPMSFRDHARARRRGVYWLTPALVLVLYICVMGVFFWLQRIHDDSVMFVTIDQELRQQRLIWVVLALSCVIV
ISLLMLWRYTRFRSEAEAALIAETGFRRAMENSMSTGMRVLDMEGRIAYVNPAFCRMIGWNEADLIGRSPPFPYWVPGRH
DQHQHTLEVLTSGKTPSSGLEVEAQRRDGSRFTARMYVSPLLDPNGDQIGWMTSMTDITEPKRIREALTAAHERFMTVLE
GLDDAISVTADTHDGLELLFANRTYRRVFGAQTGGHDELLAGRRGRFTDESVEVFAPSVQRWFEVHHRMLAWTDGRRVRM
QVARDITERRVHEEASRVQQEKIQLTSRLTTMGEMASSLAHELNQPLTAIANYSMGAVALVKAGHTSPNMLLPALEKAAS
QAERAGKIISRIREFVKRSEPRRQRVAISRIVDNAIGFAEIDARKRRIRIERFVPSNAPDVLADPILIEQVLLNLLKNGL
EAMEKSESDELKVAVIPHEQHIEVAVVDRGHGLPEPERLFEPFFSTKSQGLGMGLNICRTIIESHHGRLWADPNPAGGTI
FRFTLPCATPQSQAQNDQSEELHA
>SEQF2266_AEE66406.1 pyruvate dehydrogenase subunit E1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSFAQAGALAAANDEDTLETQEWLEALAAVLDREGPQRAHYLLERLIDEARRSGAHIPFSPNTAYVNTIPPGLEPAHPG
NLELEARIRSYVRWNAMAMVVRANKHNPPDGGDLGGHIASFASLATMIGCGQNHFWHGETEEHGGDLVYFQGHTSPGMYG
RAYLEGRLTEDQLNHFRQEVDGKGLSSYPHPKLMPDFWQFPTVSMGLGPLMAIYQARFLKYLHARGIADTSNRKVWVFCG
DGEMDEPESLGAIALAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGDFRGSGWNVIKLIWGGYWDPLLAHDKEGI
LRRIMEEAVDGEYQAYKANDGKYVREHFFGKHPKLLEMVARMSDEDIWRLNRGGHDPHKVYAAFDAASKHAGQPTVILAK
TIKGYGMGHVGQAKNPTHQQKKLELDSIREFRDRFGIPIPDDKLEELPYYKPAEDSPEMQYLHERRKALGGYLPKRRAKA
DEQLKAPALDAFKAVLEPTAEGREISTTQAFVRVLNQVLRDKDLGPRVVPILADESRTFGMEGLFRQIGIYAPEGQKYTP
VDKDQVMYYKESADGQLLQEGINEAGAMSSWMAAATSYSTNNRIMVPFYIYYSMFGFQRVGDLAWAAGDMQARGFLLGGT
AGRTTLNGEGLQHEDGHSHLLASTIPNCVSYDPTFAHELAVIIQHGLKRMVEDQENVYYYLTVMNENYPQPGLTAGDEEG
IIRGMYKLKSHGKGKQRVQLMGSGTILCEVMAAQELLEADWGVASDIWSVTSFTELRRDGLDAERHNLLHPEGKQQVPYV
TTQLAKSDGPIIASTDYMKLFADQIRPFVPKDRTYKVLGTDGFGRSDFRYKLREHFEVDRHFVVLASLRALADEGKIPAA
KVAEAIKKYGINPNKANPHHA
>SEQF2266_AEE66407.1 dihydrolipoamide acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNIVEIKVPDIGDFKEVEVIEVLVSAGDTIKAEQSLITVESDKASMEIPASAAGVVKSVKVKVGDKIAEGTVILEVEAA
GEAAAAPKAEAPKAEAPKAEQAAETPKADAAKAEAPQAQAAQAEAPAAAGPIEVKVPDIGDFKEVEVIEVLVAEGDTIKA
EQSLITVESDKASMEIPASAGGVVQSLKVKVGDKVAMGTVIAVVQGQGAAAAPAAAEPAAPASPVAPASAPAQRPAPAAA
LQDEDLKPGQLPHASPSVRKFARELGVNLSRVTGSAAKGRITADDVRAYVKQALSAGAPAGASGGGDGAALGLLPWPKID
FTKFGPIEAKPLSRIKKISGANLHRNWVMIPHVTNNDEADITDLEALRVALNKENEKSGVKVTMLAFLIKAVVAALKKFP
EFNASLDGDNLVLKQYYHIGFAADTPNGLVVPVVRDADKKGILELARETSELARKAREGKASPAEMQGGCFSISSLGGIG
GTHFTPIINAPEVAILGVSRSAHKPVWDGKQFVPRLTLPLSLSYDHRVIDGASAARFNAYLGQLLVDFRRIAL
>SEQF2266_AEE66408.1 dihydrolipoamide dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNIVEIKVPDIGDFKEVEVIEVLVAAGDTIKAEQSLITVESDKASMEIPASSAGVVKSVKVKVGDKVAEGTVILDVEAA
GEAAAAPKAEAPKAEAPKAEAPKADAPKAPAAKASAPAAAAYSGSADLECDMLVLGAGPGGYSAAFRAADLGMDTVMVER
YATLGGVCLNVGCIPSKALLHNAAVIDEARALAAHGISFGEPKVDLDKLRGYKDSVVAKLTGGLAGMARARKVRVVTGTG
EFADPHHLTVTDGEGKKQTIRFKQAIIAAGSQSVKLPFLPDDERIVDSTGALQLRAIPKKMLIVGGGIIGLEMGTVYSTL
GARLDVVEMLDGLMQGADRDLVKVWQKMNAPRFDNIMLKTKTVGAEARKDGIYVSFEGEGAPKEPQRYDLVLQAVGRSPN
GKKIGAERAGVAVTERGFIEVDRQMRTNVPHIYAIGDVVGQPMLAHKAVHEGHVAAEAAHGEKSYFDARVIPSVAYTDPE
VAWVGLTEDEAKKQGVKVEKGLFPWAASGRAIANGRDEGFTKLLFDAETHRIVGGGIVGTHAGDLISEIALAIEMGADMV
DIGKTIHPHPTLGESVGMAAEVAEGVCTDLPPMRKK
>SEQF2266_AEE66409.1 flagellin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAVINTNYLSLVAQNNLNKSQSALGSAIERLSSGLRINSAKDDAAGQAIANRFTANVKGLTQAARNANDGISIAQTTEG
ALNEINNNLQRIRELTVQASNGTNSASDIDSIQQEVNQRLEEINRIAEQTDFNGIKVLKSNATDMTLSIQVGAKDNETID
IKIDRNSNWNLYDAVGTVPGGTVNGEARTVNALGFDVLSAVTTTIASDTVTFDAAVAAAEQAAGAAAGDGSVVSYGDAAN
PQYAVVVDNAGTLTSYALTFDKDGKAALGDQLGAVASQAAEAAVGVNDVASGDNVTVSGGNANALSKLDDAMKAVDEQRS
SLGAIQNRFESTVANLNNTITNLSAARSRIEDSDYATEVSNMTKNQILQQAGTSVLAQANQVPQNVLSLLR
>SEQF2266_AEE66410.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66411.1 16S ribosomal RNA methyltransferase RsmE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLPRFYCDARLAPGECVALPEALAHHAVRVLRLRAGAALVLFDGAGGEYPATLEIEGKAAWAQLGAHVPREAELPGRIT
LVQGLPAGDKMDWVVEKAVELGAWRVSPIAAQRSVLQLNGARAEKRLAHWQRIAQAAAEQCGRNRLMAVDAPQALAAWLA
QAPGAALRLLCHPEAELDLAGALARHAAHDDICLLVGPEGGWSDEELEQARAAGVQAVRFGPRVLRTETAGIALIAAVSA
IRGWNG
>SEQF2266_AEE66412.1 transketolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNPTAPKLALADAIRVLAMDAVQKANSGHPGAPMGMAEIAQALWLGNLRHNPADPAWANRDRFVLSNGHGSMLIYALLH
LTGYDLPLEELKNFRQLHSRTPGHPEVGITPGVETTTGPLGQGLANAVGMALAEALLAAEFNRAGHTVVDHHTYVFLGDG
CLMEGISHEACSLAGTLKLSKLVALYDDNGISIDGHVEHWFADDTATRFEGYGWNVIRGVDGHDVAAVDAAIKQARAQSE
KPTLIVCRTVIGKGSPNMAGTHNVHGAPLGNDEIAATRAALGWSAGPFEVPQDIYAAWDSRPAGALAQAAWEDKFQAYAA
QYPAEAAEFTRRMKGELPEGFAARFEAFLQATVAKGETVATRKASQFAIAELAGLLPEMLGGSADLTGSNFTDWKGVAPL
RAGHHGVHFGRHINYGVREFGMAAIMNGIALHGGYLPFGGTFLTFSDYSRNAIRMAALMKQRVVHVFTHDSIGLGEDGPT
HQSIEHAASLRLIPNLSVWRPCDTVETAAAWGAAVTRPASIGMDLHDGGPTALLLSRQNLPFVARDEATQKAIVRGGYVL
RDAHDARAAIIATGSEVAIALAAQELLAADGIAVRVVSMPSTDVFDRQDAEWKREVLPAGMPRVAVEAGVTAFWHKYVGL
EGAVVGIDRYGESAPAGALFKFFGLTAEKVAEAVKQVL
>SEQF2266_AEE66413.1 glyceraldehyde-3-phosphate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIRVVINGYGRIGRNILRAHYENGKKHDIEIVAINDLGDPKTNAHLTRFDTAHGKFPGTVTVDGDYMVVNGDKIRVLAN
RNPAELPWGELGVDVVLECTGFFTSKEKAGAHLKGGAKKVIISAPGGKDVDATIVFGVNQNVLKAEHTVISNASCTTNCL
APLVKPLHDKLGVETGLMTTVHAYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLVLPELNGKLDGFAIRVPTI
NVSLVDLSFVAKRDTTVEEVNSILQAAAEGELKDILTYNTEPLVSIDFNHNPASSNFDATLTKVSGKLVKVSSWYDNEWG
FSNRMLDTTVALMSAK
>SEQF2266_AEE66414.1 phosphoglycerate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNVNTLSALAKSGALSGKRVFIRADLNVPFDDAGRISEDTRIRASVPGIRLALDAGAAVMVTSHLGRPKEGALTEADSL
APVAQRLSELLGMQVRLVPDWVDGVSVEPGEVVLLENCRGNVGEKKDDEGLSRKMAALCDVYVNDAFGTAHRAEATTHGI
ARFAPVACAGPLLEAELDALGRALHDPKRPLVAIVGGSKVSTKLSILQSLADKVDQLVVGGGIANTFMLAAGLPIGKSLA
EPEQVEQARAVIEIMKRRGAEVPIPTDVVCAKSFGADAAATVKAAADVAEDDMILDIGPQTAQRLADILKTAGTIVWNGP
VGVFEFDQFAHGTEVVARAIADSAGFSIAGGGDTLAAIAKYGIADQTGYISTGGGAFLEFLEGKALPAVAVLQARAA
>SEQF2266_AEE66415.1 enoyl-(acyl carrier protein) reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAAAPLQGRRGLVTGIANQDSIAWGCARAFRALGAELAVTYLNDKARVHVEPLARSIDAALLLPLDLRVDGQLESVFEQ
IGARWGSLDFVMHSIAYAPRDDLRGRVVDCSRAGFLQAMDISCWSFIRMAHLAEPLMPKGGTLFCMTYYGSQMVVEHYNM
MGPVKAALESATRYLAAELGPQGIRVHAISPGPLKTRAASGITGFDALLDRAQAKAPARSLVGIDDVDEATAWLATDAAR
RITGQTLYIDGGYHIID
>SEQF2266_AEE66416.1 acetate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDNLLVINAGSSSLKFYLYEIAEGDELRPTLGGQLDGIGGSRPHLRIRAQDGHTLLERDVAPTHAADVPGAQEVLGTWL
SGHLGGAPCAIGHRVVHGGTQYDAPVLVDDDVLAQLDDLTPLAPLHQPNNLAPIRVIRERRPNIPQVACFDTAFHRTHSP
LADRYALPEHLYQEGVRRYGFHGLSYEYIAQRLRRALPEIAGGKIVAAHLGNGVSACTMVDGRSVDSTMGFTALEGLPMG
TRPGRLDPGVVLWMMERGMSHDDIEHLLYHDCGLKGLSGIGNDVRELLASDAPAARLALDYFAWRVAEGIAGLGCAMNGI
DAIVFTAGIGENAAPVRAAIARHWEWLGVRLDEARNARHGPRISSDDSAIGVYVVRTNEELIIAQHTLALVRQRQA
>SEQF2266_AEE66417.1 phosphate acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSATRHNHYERLIAHARTLPALPCAVAHPCDETSLGAALQAMQLGLLTPILVGPQQKIRDVAERCGLDLGGAAIVDAPHS
HAAAAAAVQLVRGGQASLLMKGSLHTDELMHEVVARDTGLRTERRISHVFIMDVPTYPEPLFITDAAINIFPDLETKADI
VRNAIALHLGLGLGEPRVAILSAVEQVMPSIPSTLEAAALCKMADRGQIQGGILDGPLALDNAISPEAAQVKGIVSPVAG
RAQVLVVPDLEAGNMLAKNLSFLANAQAAGIVLGARVPIVLTSRADSAQTRLASCAVATLYAHHLARATPLA
>SEQF2266_AEE66418.1 hypothetical protein BPTD_1000 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAASAADRTAPDRSPAPAAHPAANLWTSAYQYTLDAWQRGILYTDVMRQRGNQYLTHMAKRAPNVLSMKSELVLDGRKFE
RPVNYALLRIVPPADAPVDPQKHPFLVVDPRAGHGPGIGGFKPESEIGVAVRAGHPCYFATFLPHPTDTQTVEDVMRAEA
RFLEEIIALHPQAEGRPVVVGNCQAGWQIMMTAAMRPELFGPIIVAGAPLSYWAGWRDMNPMRYSGGLLGGSWLTQMTSD
LGNGKFDGAWLVQNFENLNPANTLWSKQYNLYAKVDTEAPRYLEFEKWWGGHVFLNGPEIQYIVDNLFVGNRLATAGLVT
SDGIRIDLRNIRSPIIVFCSKGDNITPPPQALGWITDLYQDDREVVAHNQTIVYAVHESIGHLGIFVSGAVARKEHQEFT
ANIDVIDVLPPGIYQAEIADKTPDTPNADLAYGDYVLSFERRRLDDVREIVERNEEDDQRFAAVARISDINLGLYRSFVQ
PWVRAAVTPQSAEWMQRMHPLRLPYELISDRNPWVAPVAQLAEQVREQRQPAAPDNPFWALQKMASDAIVAGLDIWRDLR
DSACERIFMATYGSPLVQDWAGLGAKDGPPRRHPGVSPEHRDFMAARAAELRAQIDQGGLREAGLRMLLYVSGAEGGVDE
RSFAMIRKMRADTDAKLSLQAFKDATRDQALMMQLDGPAAIRAIPKLLENASAADIRATLHGITHVLEAAGPLSDRARAS
LDEMKRLFQGAERRAVKRADAPAPARKAAARKTATGKAATGKTAARPAGRKAAATPRKGRTA
>SEQF2266_AEE66419.1 glutathione S-transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAPLTLYVDARFRSPYAMSAHVALAEKQLEFEVRLVDLAAGEQRMQPYQSRALTARVPALAHAGFHLTESSAIQEYLED
AFAPPAHPALYPAGAQARARARQVQAWLRTDLAALRRARPIDSVFDAPATTPLDDAAHCDAAKLIRVAEALLPPGQAHLF
GAWSIVDTELALMLNRLAHSGDDLPAPLRDYAAAQWQRASVQAWLRHYEAARG
>SEQF2266_AEE66420.1 hypothetical protein BPTD_1004 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTPADLQLLADYNQWMNQRLYACAAQLPPDELARERGAYFGSLLGTLNHVAVSDRVWLQRFAAHPARPAALQPVLALPT
PARLDEVLYPALGPLAAHRAWLDRCIVDWAAQLRPDDLACELAYTSLACEAARRPFGGLVLHFFNHQTHHRGQATTLLSQ
AGIDMGATDLVLRVPASGDAPA
>SEQF2266_AEE66421.1 putative acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLEIIEADFNDAAHARAIIALLDEYARGPMGGGEPLSAHARANLVAELARRPHARALLAWQDGEPAGLAICIEGFSTFAC
RPLLNLHDLAVAERFRGQGVGTRLLEALEALAARLDCCKVTLEVLEGNTRAQALYRRLGYAGYELAADTGRAMFWQKKLS
A
>SEQF2266_AEE66422.1 curved DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFKDYYKILGVQSDAPEDEIRRAYRKLARKYHPDVSKESDAETRMRDVNEAYDVLGNQEKRQAYDNLAAGVAPDGGFQP
PPGWDQGFEFHYARDGEGDQQFSDFFSSLFGGQARRRAAQQDFRARGEDHHAAIEVDLEDALRGATRDISLRSMQPDEHG
QPQVRTRTLSVRIPAGVREGQYIRLAGQGMPGYGGAENGDLYLEVRFKPHPRYRAEGRDLYMNLPVAPWEAALGAQVEAP
TPGGAVEVAVPPGSRNGRKLRLRGRGIPGDPPGDLYLVLDLVLPPADSEAAREAYRKMAQDLAFDPRRNLGV
>SEQF2266_AEE66423.1 hypothetical protein BPTD_1007 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKIVVTQATVIGKTRALSAEELAHACDAEVEWVARLVEVGIVPARGRQPAEWRFYSLDLRRAREARRLERDMGAGLDAA
ALILDLCQEVRQLKARLRALGEPPA
>SEQF2266_AEE66424.1 phosphate transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLHLFSGLDLWVGLSLVLALTFVLAFEFINGFHDTANAVATVIYTKAMPPHLAVILSGIFNFLGVLLGGVGVAYAIVHLL
PVELLINVDTGRGLAMVFAMLSAAIAWNLGTWYFGIPASSSHTLIGSILGVGMANALLTDISLAEGVNWGKAIDIGLSLV
VSPVAGFMVAGGILLLLKRWLPLSKMHKTPEQRRAIDAKKHPPFWNRLVLVLSAMGVSFVHGSNDGQKGIGLIMLVLIGI
VPAKFVLDVNSTTYQIDRTRDAASHLSAFYHRNEATLGEFLALSRGGNGADLPKTFRCDPKLTMPTIAALQDDLRGVTNY
ADLSADKRIDVRRYLLCLDDTAKKVARLEGLPARERADLQRLRGDLTTTTEYAPLWVIVAVALALGIGTMVGWRRVVLTV
GEKIGKQGMTYAQGMAAQVTAVGAIGLANVFSLPVSTTHVLSSGVAGTMVANNSGLQGGTVRTILMAWVLTLPASMLLSA
GLFWVGTLLAA
>SEQF2266_AEE66425.1 molybdenum cofactor biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSTSPSAPLVRSHPDELLIGLVSISDRASTGVYQDQGLPSLRDWLGTALTSPWQAVERLIPDEPAAISAAMVDLVDGC
GCDLVLTTGGTGPARRDCTPEATLAVATKEMPGFGEQMRQISLRFVPTAILSRQVAVIRETAGHAALIINLPGQPKAIRE
TLEGLKDADGAVLAAGVFAAVPYCIDLIGGPYAETDPAVIKAFRPKSALRQPAARQ
>SEQF2266_AEE66426.1 hypothetical protein BPTD_1011 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKARFALLALGLALAGCANVKDIRDREPAFYGSPQRSAQEYAACVSAAWKGLGVPVEQREIRNGYELVSRGSLGVDAVLT
TTTWQGKTDASLSTRLPQSGQQLVDAANLCL
>SEQF2266_AEE66427.1 putative peptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAAARLWRGAWLALALLAAQGAQAQGYISRKLSAPVPGGVAVVDLGQAAQAPEVTYRGRPVMVLREADGPWIAVVGIPL
AARPGSEAISVRGSGGAVRSIAFDIGAKKYTAQHIKLKNQRQVTPNPDDLKRIERELAEQTDAYRIFRAGVTPSNVLLDR
PVPGRLSSPFGLRRFFNGQERNPHSGLDFAAAAGTPIKAPAAGRVVLVGDYFFNGRTVFVDHGQGFISMFCHMSEIDVKV
GDEVPRGGVVGKVGATGRATGPHLHWNISLNDARVDPAIFIGAFKP
>SEQF2266_AEE66428.1 hypothetical protein BPTD_1013 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDKHETLRDAADRLNSARRAFGLGEDGLRLLRRSREAFINSLRNTGLTYAQAQVKYDNCLDEQQQLHQQAIHELQYAER
LHRQLLAELEQTA
>SEQF2266_AEE66429.1 translation initiation factor IF-1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKEELIELNGIVDEVLPDSRYRVKLDNGIEVGAYASGRMRKHRIRILAGDRVTLEMSPYDLTKGRINFRHKDERSGPPS
RPPQHRR
>SEQF2266_AEE66430.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66431.1 RNA polymerase sigma factor for flagellar operon [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNPEDSLVQYAPLVRKLALQLLARLPSSVQLDDLVQAGMIGLLDAVRRYQESPDAQFETYATARIRGAMLDELRSQDWL
PRSVRSKSRRIETAIQRKEQELMRAPSEGEIAEELGVPLAEYQGMLADAQGVQILHYEDFNTDGDSDSPWAESSAEHADP
LDALLAGDLRRALIDAIDGLPEREKLLLSLCYEQGLNLKEIGAVLNVTEARVCQLRAQATARIRARLKEQAWARLPTAHH
LAQVV
>SEQF2266_AEE66432.1 transcriptional activator FlhD [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTADSSLLADIREVNLSYLLLAQRMLRDDYAASMFRLGFSNEVADILMRLSPAQLVKLANSSSLLCRFRFDDYSLLSAL
TQDVLGGALQQAHATILLARQPVEELA
>SEQF2266_AEE66433.1 transcriptional activator FlhC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATKSVSQEADEILLASSMITLGARLQVLQAETGLSHDRLARLYREIRGCSPPKGMLPFSVDWFMTWLPNIHSSLFYNVY
TFLNQRTSSQGIRAVIDAYRLYLEHAPADAAEPVLSFTRAWMLVRFFDGGMLQLSGCRQCGGHFIAHAHDPQTDFVCAIC
RPPPRAGKTRAAARARAGQLAAPARP
>SEQF2266_AEE66434.1 flagellar motor protein MotA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIVIGYAVVILAVVGSFIGLGGHLGALYQPFELTLIAGAAVGAFMAGNSRKSLGLVAKAIPEAFRSSPYSKDVYMELMA
LLYVLLNKARREGLMAIESHIEDPLSSPIFNEYPRIMKDAKLMEFITDYLRIMISGNMSSFEIETLMDEEIETYRHEREV
PTHALQQVADALPAFGIVAAVLGVIKALAAVDQPPAILGDLISKAMVGTFLGVLLAYGFVAPMAARIERRTSESVKVLEC
IKVTLLASMNGYPPQLAVEFGRKVLFSAVRPSFGELEEHVRQAKSAATGRA
>SEQF2266_AEE66435.1 flagellar motor protein MotB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTVNNHRVVIRRRKVRRGGHHGGSWKIAYADFITAMMAFFLVMWLISIVPREELKGIAEYFRMPLRVALTGGPSSSAET
SAIPGGGQDPLRSQGDVRRAEGNRVEAQPMGDAERRDRHRLERLKVRLENLIEESPVLKNFRPQLLIDMTTEGLRIQIVD
NQNRPMFATGSADVQPYMRDILRELGPVLNDLPNKISIAGHTDASQYARGERAYSNWELSADRANASRQELVAGGMHEGK
VLRIQGLASSMSLVKDDPFAAVNRRISLVVLNASTQRRIENENAAAADVNARDAQGVGAALAGQLAASGSDGGAR
>SEQF2266_AEE66436.1 chemotaxis protein CheA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSGLDLSQFYETFFDEADELLAQMEQLLLELDVGAPDIEQLNAIFRAAHSIKGGAATFGCFQKLAGTTHLLENLLDAIR
RGEMGLRADMVDIFLETKDVLKSQLDAYRASEEPEDAVFERICAVLRQLALEGGQAPAAAAPAPVAAPEPDPEPEPAPQP
AAASTAAGLPLRVRFSKVSDKDAQSLLEEMGNLGDVRASERAGQTLTVWVDTTCSPDDIEAVCCFIIDADQLEIAREAEP
AHAPAQAAVAAAPDAAATPTPAPAPAAAQAAEPARAARPSIAPAHADKESTSIRVGVEKVDQVINLVGELVITQAMLAQT
ASTLDPVLHDRLLNGMEQLERNARDLQEAVMSIRMMPMDYVFSCFPRLVRDIAGKMGKQIELQTYGRATELDKSLIERII
DPLTHLVRNSLDHGIETPDKRVAAGKEPVGQLVLSAQHNGGNIAIEVSDDGGGLSRERILRKAVAQGLTVNENSPDDEIW
QLIFAPGFSTADQVTDISGRGVGMDVVRRNIQDMGGHVQLSSVPGQGTTTRIVLPLTLAILDGMSVRVGEETFILPLNHV
TESLQPQVDQIYSVAGNERVMQVRGEYLPLVEMHRVFSVGQAQADPTQAIAVIMQAEERRFALLVDHLVGQHQVVVKNLE
SNYRKVPGISAATILGDGSVALIVDVLALARANREKWSQPEAILN
>SEQF2266_AEE66437.1 chemotaxis protein CheW [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAKPHTQATRAEDVGNEFLVFTLGEEEYGIDILKVQEIRGYDAATVTRIANVPSFIKGVTNLRGIIVPIVDLRIKFNLG
SVEYNEQTVVIILNLDRRVVGIVVDGVSDVLMLNAAQVRPAPEFGATLSTEYLTGLGTVDERMLILVDIEKLMTSDEMAL
VEKVAS
>SEQF2266_AEE66438.1 methyl-accepting chemotaxis protein I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKFLANLSIRGSLLGVLAFFSFMLVVGAALGVLSLRVSNDTLQGVKQTQDVADAMDRVVNSYKDALNGLGRAAASHYGA
IVSAIGQPVQVEQGLGSEAAGLLQRAKASLNRAETEYEYYKGLARPASAADSLKEVENAFEALVGQGLHPLAAALEKGDM
AGYQSHAQNVLDALEGRFSGAIAAFDFWRASELLDAHEVAETRYRFVLAAVAAGGVLAALLVFSTYLFLRRRVLQPLREV
GQHFDKIAAGDLTARVDVRNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEET
AASMEQLASTVKQNADNARQANQLAGVASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVE
AARAGEQGKGFAVVAGEVRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASEE
QSSGIEQVNRAVSQMDEVTQQNAALVEEAAAAAGSLQEQAQRLAEAVAVFKINTGEVIEVPAHQLGSRQAPGAREAALAR
DDALALGH
>SEQF2266_AEE66439.1 chemotaxis-specific methylesterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKIKVLCVDDSALVRGLMTEIINSHPDMEVVATAPDPLVARELIKKHNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV
MVSSLTERGGEITLRALELGAIDFVTKPKLGIRDGLIEYSEVIADKIRAASRARLRALAPASHAAPLRLRSPFASSEKLV
IVGASTGGTEAIREVLQPLPADSPAILITQHMLAGFTRSFAQRLDALCAVTVREASDGERVLPGHVYLAPGGETHMRLGR
SGANYVIGLQASEPVNRHRPSVDVLFHSAAEAAGGNAIGVILTGMGKDGAAGLLAMKRAGARTMAQDEASCVVFGMPREA
IALGAADEVVPLADISERILTRLGDRGHRV
>SEQF2266_AEE66440.1 chemotaxis protein CheY [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVDKGMKILVVDDFPTMRRIIRNLLKELGFENVDEAEDGAIGLEKLRNGAFQFVVSDWNMPNLDGLEMLKQIRADAALKS
LPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLEEKLNKIFEKLAG
>SEQF2266_AEE66441.1 chemotaxis regulator CheZ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNATDTGMQADPTDLIQRIASLTRMLRDSMRELGLDQAIKDAAEAIPDARDRLRYVAQMTEQAANRVLNATEAAGPIQDG
MARGAQALDERWQQWYDQPLELPQARALVQDTRAFLAAVPQHTQQTQAKLMEIVMAQDFQDLTGQVIMRMMDVVGAIERE
LLQVLLDNVPQERRDEANSLLNGPQVNPGGKADVVTSQDQVDDLLASLGF
>SEQF2266_AEE66442.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE66443.1 putative aldo/keto reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSFPTQRLGATDMRITRVGFGAWAIGGPGWSVGWGAQDDGESIRAIRHAVNRGINWIDTAAVYGLGHSESLVGRALAG
MPPSERPYVFTKGGLVGSPADPMAKPRRIGAPDSLRREVEASLRRLGVEAIDLYQMHWPAGDGTPLEVYWQALLDLRQAG
KVRHVGLSNHNLAQVQAAEQLGHVETLQPPFSAIRRESAADLLPWCASHDTGVIVYSPMQSGLLSGAFSAERAAALPEGD
WRARNAEFMAPRLAANLEFADALKPIAQHHGASVGAIAVAWALAWPGVTGAIAGARSAEQVDGWLGAATLELDSDDMRQI
ADALARTGVGGGPLLPPPDEAALALTARP
>SEQF2266_AEE66444.1 apolipoprotein N-acyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPAGKGPAWRQPAILAAAGAAHALSFAPDPLPAWSLAPVQVIALAVAAHASLQAPSARRALARGWLFAMFSFSLGLYWM
YVSMHDYGGLAAPLAAAGVLALSAFLALFPGLACAAARWLCPPHWDASPPARARRTLYTAATWAACWAALEWLRAVVLTG
FPWLNIGYAHVDSPLAGWAPLLGVHGMALLAAFAAAALAGLWQSASGRIDSRQALAAGVALLLAGAGWLLGQFSWSRPEG
KPLHLRLVQGNVEQSQKFDPALLETGLRRHLELASLPPRPGEPKPDMIILPETVLPVFQDQLPASVWDAWIEVARRADTR
IAMGVPLHTQPDGATGHRYTNSVIGFDASTPVEQLRTGTTAMRYDKQHLVPWGEYVPPGFRWFVDMLDIPLGDFDRGAAR
QPSFDIAGQRIAFNICYEDLFGPELLPALQDGPDGRPGATIMANVSNLGWFGNTWALRQHLQIGRLRTMETARPMVAATN
TGITAAIDARGRVAAALPADRAGVLPVAVQGMTGLTPYARFGDKPALALIGLLLIAAAARGRRPRQP
>SEQF2266_AEE66445.1 magnesium and cobalt efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDPYPATEAHAQRAAKSPPKSLLDRLLSLVRREPEDREGIKAILEAAHERELLDAESYAMIKGALAVSERTVADIMVPR
SRMDLLDISQPLPQLLATIIETAHSRFPVYEDDRDNIIGILLAKDLLRYMLEPALDIRSLVRPAVFIPEVKRLNVLLREF
RASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDIEDEFDEDEEESIFPEGENQWRLTASTDISHFNATFATDLPDDEYDS
VGGWLGGQLGRIPRRGDSADHDGLHIEVVRADARRALWLRVRRNAGAQPPASAAE
>SEQF2266_AEE66446.1 putative metalloprotease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQYGVADARLPRWRLRRWVQYALAGAAGDGHAGLAGAELGLRLVGLAEGRRLNREFRGRDYATNVLTFEYGTGPDGVARG
DIVVCVPVLAREAREQRKTLLDHAAHLTVHGTLHALGYDHIKAGEARRMEALETAVLARMGIADPYLAA
>SEQF2266_AEE66447.1 PhoH-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSRSRARRTMPAIVNLDGDNIHLANLCGPLDENLRQLADGMGVKLARRGSRVTIEGEQAELAGRALRRFHEQATHRAL
SVDDIQLGLVEIGVGRPVEVQADPRELDQTLPPVDDESGGVVLRTRRTDLRPRTPRQRDYMNNILKHDITFGVGPAGTGK
TWLAVACAIDAMERDTVQRLVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFERVQRLFEKQTIEIAPLAY
MRGRTLNHAFVILDEAQNTTPEQMKMFLTRIGFGSKAVITGDPSQVDLPRGQQSGLAHAVQVLEEVQGIATTRFTNRDVV
RHPLVARIVDAYDQAAANGD
>SEQF2266_AEE66448.1 hypothetical protein BPTD_1035 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYIRTFGCQMNEYDSDKMADVLRADQGLELTDNPEDADVILFNTCSVREKAQEKVFSDLGRVQHLKKQNPNLVIGVGGCV
ASQEGEAIVKRAPYVDVVFGPQTLHRLPDLIKRRRAQGVSQVDISFPEIEKFDALPPPRVDGATAFVSIMEGCSKYCSFC
VVPYTRGEEVSRPFDDVLLEVADLADQGVKEVTLLGQNVNAYRGAMGDSGEIADFAMLLEYVHEIPGIERIRYTTSHPKE
MTQRMVDAYARLPKLVSFLHLPVQAGSDRVLAAMKRGYTALEFKSVVRRLRAARPSLTLSSDFIVGFPGETEEDFQKTMK
LIEDVGFDTSFSFVYSRRPGTPAADLHDDTPQDVKLRRLQQLQALINQQAAAIAQGMIGTRQRVLVEGPSRRDPNELMGR
TENNRIVNFPGVPRLIGHMVDVVVTHAHTNSLRGRVAGIERDTSGAE
>SEQF2266_AEE66449.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE66450.1 preprotein translocase subunit SecF [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFFRIHRTIPFMRHALVLNIISLVTFLAAVFFIITRGFHLSIEFTGGTVMEVSYAQTAQLDQVRTAIGTLGYTDFQVQN
FGTSRDVMIRLPIAEGQTSATQSETVMGALKAADPAVELRRVEFVGPQIGQELLHNGLMALLVVVIGIMVYLGLRFEWKF
AVAGVIANLHDVVIILGFFAFFQWEFSLAVLAGVLAVLGYSVNESVVIMDRIRENFRKYRKASVQEVINSAITQTISRTI
ITHGSTQMMVLAMLFFGGPTLHYFSLALTIGIWFGIYSSVFVAAALAMWMGVKREDLVKPVKKDGDEVEIA
>SEQF2266_AEE66451.1 preprotein translocase subunit SecD [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRYPLWKYITVLVAVVIGLLYTLPNFYGESPAVQVSSAKATIKVDQATLEQVQQIIENAQLPVDSVYYEQNGTLGTVRA
RFPSTDVQLQARDLIDRTLNTVAGDPHYTVALNLLPASPPWMRSLGWFEPKPMYLGLDLRGGVHFLLQVDMQGALTARYD
SLVADVRSALRDQKAEVGAIERSGQSVVATFATAEQRDRARDVLRSRLPDLQFTETSDGGKLQLTGMLNPAAVTRVQDTA
LKQNINTLHNRINELGVAEPVIQQQGADRIIVQLPGVQDVAKAKELLGRTATLEIRMVDDSPAAQSALAAGSVPFGLERY
TDRDGRPLLVRRQVVLTGENLQDAQPGRDGQTQQPAVHLTLDSKGARIFRDVTRDNIGKRMAILLFENGKGEVVTAPVIR
SEIGGGQVQISGSMTAEEAADTALLLRAGALAAPMSIIEERTIGPSLGADNIAKGFYSTLYGFIAIAIFIIVYYHLFGIF
STIGLTVNVLLLLALLSMLQATLTLPGIAAIALTLGMAIDANVLINERIREELRNGATPQQAIHHGFERAWGTILDSNLT
TLIVGLALLAFGSGPIRGFAVVHCLGIVTSMFSSVVGVRALANLWYGRKKKLSSISIGTVWKPKAN
>SEQF2266_AEE66452.1 putative secreted protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAIDTAGLVLAQAAPAEGNALMGMLPIVLMFVILYFLMIRPQMKRQKEHRNMVAALSKGDEVVTSGGMLGRVSKVTDSY
ITVEVSELADKPVEVVMQKTAVSAVLPKGTIKAL
>SEQF2266_AEE66453.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66454.1 queuine tRNA-ribosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGLQFELLATDGGARRGRLTLNHGVVETPIFMSVGTYGSVKAMLPHELEDIGAQIVLGNTFHLWLRPGTAIMEKHGGLH
GFMQWDKPILTDSGGFQVFSLQGMRKITEEGVKFASPIDGARLFLTPEESMRIQRSLNSDIVMVFDECTPYEIDGRPASI
DEDARSMRMSLRWARRSRDEFDRLGNPNALFGIVQGGMYEALRDESLAGLAEIGFHGYAIGGLSVGEPKEDMMRILAHVT
PRLPAQAPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGWLFTRYGDVKIRNARYRDDTRPLDPSCACHTCGHFSR
AYLHHLQRANEITGARLNTLHNLHFYLAIMGEMREAIAAGRFEAWRAQFAADRARGVD
>SEQF2266_AEE66455.1 tRNA ribosyltransferase-isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTPLTLADFDYHLPPELIAQSPAAERGGSRLLHLDAASRLHDRRFPDLAGLLRPHDLLVFNDTRVIKARLTGQKATGGK
VEVLVERITAPDRALAHVRASKSPGPGMRLRLAEAFEAEVLGREGELFDLRFPAPVLDLLDAHGATPLPPYITHAADATD
ERRYQTVYAREPGAVAAPTAGLHFDQPMLEQLAAQGVQRAFVTLHVGAGTFQPVRVQNLAEHIMHAEWYTVPEATVAAIA
RARAHGGRIVAVGTTSVRALESAAAQAQDGPLAAAQGDTRLFITPGYRYRAVDALLTNFHLPQSTLLMLVSALAGVEPIR
RAYAHAVAERYRFFSYGDAMFIETPAP
>SEQF2266_AEE66456.1 D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRAGKQGKWQQWLAGVMLALGAAGAAAQGLPSSLVAAWKATKLPDQSLSLVVQEINGPRLATLNAKEPRNPASVMKLVT
TWAALSELGPSYAWRTEFLTEPGNRPDAHGVLRGPLYLRAGGDPQLLLQDLWALLRELRLRGVKQIGDLVVDRSIFGQVA
IDPGAFDGASDRAYNASPDALMVGFGAQRLLFTPDAAARKWVPMIDPPLPGLRLEGAVEWSDVRCPGPPVVGTEPVVTQQ
GVSIRLSGKVAGSCGEFSLYRLALSQPEYASAVFRLLWRELGGTLKGQIRSGVVPPDAVVLASHDSPTLGEAIRTINKRS
NNVMARTLLLTLGAERGRRPATVESSGVVARTVLGAQGLEMPELVIDNGSGLSREGRVSADSLASMLTVAWNSPLMPEFI
SSLAIAGVDGTVRRRLKGNGAQGMAHLKTGSLRDVRAVAGYVLGASGKRYVVVSMVNHENAAAVRSFDDALVAWLAEQ
>SEQF2266_AEE66457.1 uracil phosphoribosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVHEIRHPLIRHKLGIMRRADLSTKSFRELSQEVAALLTYEATKDMPLAPASVEGWCGTVEVDKITGKKVTVVPILRAG
IGMLDGVLSLIPGAKVSVVGVARNEETLQAHTYLERLVGELDQRLALIVDPMLATGGSMVAAIDMLKRAGCREIRALTLV
SAPEGIDAVLKAHPDVQIYTASIDQGLNENGYIMPGLGDAGDRIFGTTQKHAE
>SEQF2266_AEE66458.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKQVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE66459.1 pertactin precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNMSLSRIVKAAPLRRTTLAMALGALGAAPAAHADWNNQSIVKTGERQHGIHIQGSDPGGVRTASGTTIKVSGRQAQGIL
LENPAAELQFRNGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVAGEQAQASIADSTLQGA
GGVQIERGANVTVQRSAIVDGGLHIGALQSLQPEDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRA
AGVAAMQGAVVHLQRATIRRGDAPAGGAVPGGAVPGGAVPGGFGPGGFGPVLDGWYGVDVSGSSVELAQSIVEAPELGAA
IRVGRGARVTVSGGSLSAPHGNVIETGGARRFAPQAAPLSITLQAGAHAQGKALLYRVLPEPVKLTLTGGADAQGDIVAT
ELPSIPGTSIGPLDVALASQARWTGATRAVDSLSIDNATWVMTDNSNVGALRLASDGSVDFQQPAEAGRFKVLTVNTLAG
SGLFRMNVFADLGLSDKLVVMQDASGQHRLWVRNSGSEPASANTLLLVQTPLGSAATFTLANKDGKVDIGTYRYRLAANG
NGQWSLVGAKAPPAPKPAPQPGPQPPQPPQPQPEAPAPQPPAGRELSAAANAAVNTGGVGLASTLWYAESNALSKRLGEL
RLNPDAGGAWGRGFAQRQQLDNRAGRRFDQKVAGFELGADHAVAVAGGRWHLGGLAGYTRGDRGFTGDGGGHTDSVHVGG
YATYIADSGFYLDATLRASRLENDFKVAGSDGYAVKGKYRTHGVGASLEAGRRFTHADGWFLEPQAELAVFRAGGGAYRA
ANGLRVRDEGGSSVLGRLGLEVGKRIELAGGRQVQPYIKASVLQEFDGAGTVHTNGIAHRTELRGTRAELGLGMAAALGR
GHSLYASYEYSKGPKLAMPWTFHAGYRYSW
>SEQF2266_AEE66460.1 siroheme synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLFPIFADLTGRRVLVVGGGAVAVRKTQALLQAGAEVVVGAPRLDPALAALAEQGGIARLDGGFEPAWLAGAWLVVAAT
DDRAVNAAVSEAARARRVFCNVVDDAELSSFQVPSVVDRSPLIVAISSSGVAPVLARRLRERIESLFDHSLGQLAALAAR
YRPRIRAARPDLGQRRRFYDWLLDGPVAARLRQQQPGLAEQELEQALRAPQAAPRGSVVLVGAGPGDPGLLTLKALRALN
EADIILYDRLVSEGVLALARRDAERVPVGKLPGKGHDATQARIHALMLAQARAGRRVVRLKGGDAFIFGRGGEELEYLRA
HGVPYEVVPGITAALACAAYAGMPLTHRDHAQSVRMVTAHCRADQDTLDWAGLARDQQTLAFYMGVGQLDYVTARLLEHG
RAPATPFALIENGSRPEQRVVTGTLADLPEIARRRGVRPPALLVIGEVAALADTLQWFGQHQRGLPGPQALAA
>SEQF2266_AEE66461.1 hypothetical protein BPTD_1049 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMVRFFVSIGVLAWAGAAQAGVCDAKFMHDGGQVQLTGSGNIGLGADLGFTEVSKTNGDNCRARVQGMATFSYAGLPPGK
SRLDYLMTVKNGQATFVKYAEAGEQPRSEGQFDLRMLGLFAYDKISGEGQRLPGASYRLRIGKEAPVGGQPTTVVRIGEK
TVGARQDLSTALGRHACWPITYPRSSEPTMATFKGLTLPIPGMDTTVTDWYCPSVNLVMRQDIDQAGIKSSVEITQLK
>SEQF2266_AEE66462.1 hypothetical protein BPTD_1050 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAARRSDEATKEKLIDSVKTSLNDAETLLREAASTTGDKATELRERALASVRRTREALYDAQDAVLERGRRAARATDDYV
HDNPWQAISIAGVTGLLLGLLISRR
>SEQF2266_AEE66463.1 hypothetical protein BPTD_1051 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGLRRSVFGVAASLVGLTRTRLELLALEAAGEKIRLIKLLGMAFGALLFLTLAVLVFTITIAVAFWPTESRYAALGWLAG
GYGVIGLVLFFLVRRDLVDGPVPFAATLEELGRDTDMLERVRDAQRASDGQRNAEDD
>SEQF2266_AEE66464.1 hypothetical protein BPTD_1052 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARHSASVDRMVRLELLRARAALEREALAQGIVEAGRTLTPSNMVKSIWPSLGKANTSRLFWQAFALVRRYPFVSSTLSA
MVMGRGARRSRLLKLAGVALVGWQAYRIWQSAREERQAD
>SEQF2266_AEE66465.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGSALKYRDLRDFLAQLERQGELKRITAPVSTRLEMTEIADRVLRAGGPALLFENARHNDAPADMPVLANLFGTPRRVA
WGMGADDVGALRETGELLASLREPEAPKGLRDALAKVSMLKAALWDMSPKTVRSAACQEIVWEGADVELSRLPIQTCWPG
DVAPLLAWGLVITRGPNARRQNLGIYRQQPLGPNKLIMRWLSHRGGALDFRDHAQAHPGKPFPITVALGADPATILGAVT
PVPDTLSEYQFAGLLRGSRTEVVKALGSDLSVPASAEIVLEGHLLPADDPRAVAAVVPEGANPPPATGYEMALEGPYGDH
TGYYNEQDWFPVFTVDRITMRRNPIYHSTYTGKPPDEPAVLGVALNEVFVPLLRRQLPEIVDFYLPPEGCSYRLAVVSIR
KQYAGHAKRVMFGLWSVLRQFMYTKFIVVVDEDIDPRDWTEVVWAMTTRMDPVRDTVLVENAPIDYLDFASPVSGLGGKM
GLDATNKWPGETSREWGTPIHMDEAVKRRVDAMWDTLGL
>SEQF2266_AEE66466.1 putative transglycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDASVAGLFRQLAQGVHHHLAEWLRISSVYLGIAVIVTVSMGFALPGLRDQALQVHKALLTALAPTSMPSAELEPGAEA
GADASSAVVMAIPSAPASNATGFLGPLRSDTPPAPPNRPSAASSAQVEALRNYISRKYKVAYDATAVLVNTVYKVGREKQ
LDPLLLLAVIAIESRYNPFAESPVGAQGLMQVMTRVHQDKFDAIAHVGKGNPLDPVANIHVGSTILKDCINRRGSFNGGL
ACYVGATGPDDGGYGAKVLAERRRLALASGIALARD
>SEQF2266_AEE66467.1 aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRLATRTNDFLTFQVVELFKEAQALQAAGRDIISLGIGEPDFTAPPQVVEALERATRAGLNGYSAPAGLSALREAIAAF
YESEFGARVDPARIIVTAGASGALALACAALVNPGAQVLMPDPSYPANSNFVLAAGGQPRLIPSTAAKRFQLSAQDVRDH
WNDATQGVLIASPSNPTGTSIAHDELAELLAAVRERQGFSIVDEIYLGLSYESQPRSALLLDDNIIVINSFSKYFHMTGW
RLGWMIVPESMAAKVEKMAASLAICAPTLAQHAALACFTPDALKIFEHRREAFKQRRDYLLPEFERLGIPVPVRPDGAFY
IYADIAALGTTSMAFSHRLLHEGGVAAVPGLDFGPAHGERTMRFSYATGLDRLQEAVARIEKLL
>SEQF2266_AEE66468.1 hypothetical protein BPTD_1056 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPSRRAFLLGRRPRQSSWAAFCERLSLAVAAPLRDLDPAGGAALLRARSDAEVRRARALCQEYGVSLGLPGARPAGRPV
LQIDPRGLRALAPEGGAWRAGPGCLAGELAAAGLGQFAEVAPTCTLADWLADSHGWPTGETGVSGVLEASVLLADGTAEV
LGPFGAADVRPLRSATVQRLVPALFQLAGGQDAAACLAQPAWPARYRLDALQPREPAGVNLAHLLLGHDSALAWVESVLL
APAAAPPPAASGSAPAEAARLDARVRALFDPDGVLAARAGSGAVGAKGRE
>SEQF2266_AEE66469.1 malic enzyme [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDANFRKAALEYHEHGRPGKISVTPTKQLSNQRDLSLAYSPGVAAACEEIVDDPVNVFRYTGRGNLVGVITNGTAVLGLG
NIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFH
DDQHGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIEGVVYEGRKKLMDADKERF
ARKTKARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPLILALANPNPEILPEAAHAVRDDIVMATGRSDYPNQVNNV
LCFPYIFRGALDVGATTITREMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAAM
EGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDERVLRAVQVIVDEKVAKPILVGRP
QVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTTYWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGA
VSGFHDHLRFIDEVIGRKPGAQTYAAMNILLLNERTVALVDTHVNDDPSAEQIAEYTVAAAEEMRRLNLAPKVALLSRSN
FGTGSSASGAKMRRALELVRERAPELEIDGEMHGDCALDEALRLRILPSSTLKGEANLLVCPNVDSGNIAYNLLKTTAGG
NVAVGPFLLGANAAVHILTSSSTVRRIVNMAAMAVVNADAVR
>SEQF2266_AEE66470.1 hypothetical protein BPTD_1059 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRNGQTTLQRQLRRGGALDHDGLDKQAVVDATRELGMSLLVADCDRARSRSAVLRAIAKAVDFPEYFGGNLDALYDCLC
DTVLDHKTGIVLWLYRLHSGDPALHEDSNLIDGVCADTAEFARENGRVFAYVIEHAGRHPDPEPGVAAAPYGEA
>SEQF2266_AEE66471.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66472.1 phosphate transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MENTATAAKAKLEVKNLNFYYGKFHAIRNVNMSIRENKVTAFIGPSGCGKSTLLRTFNRMFELYPGQRAEGEILLDGENL
LTSKTDISLIRAKVGMVFQKPTPFPMSIYDNIAFGVRLFERLSKGEMDERVEWALSKAALWNEVKDKLHQSGNSLSGGQQ
QRLCIARGVAIKPEVLLLDEPCSALDPISTAKIEELIAELKHEYTVVIVTHNMQQAARCSDYTAYMYLGELMEYGATDQI
FVKPARKETEDYITGRFG
>SEQF2266_AEE66473.1 phosphate transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNGVYRRRHLVNKVMLTISLGALLFGLFWLFWIIATLLVKGAPALSFTLFTEITPPPGQAGGLLNAVVGSVLMAGVGTL
IGTPVGILAGTYLAEYGQRGWLAPATRFLNDVLLSAPSIIIGLFIYAVYVAQVGHYSGWAGALALSILVIPVVVRTTDNM
LLLVPNSLREATAALGCPKWRMITLVCYRAAKTGIITGVLLAIARISGETAPLLFTALSNQFMSLNMNAPMANLPVVIYQ
YAASPFKDWNNLAWAGATLITLLVLGINILARNLFRKS
>SEQF2266_AEE66474.1 phosphate transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAVMDNSVPLPSSTADSTTTGTPSPMKQNNNALMDALFKNLTRTFAFLVFILLAAIMISLIYGSRESLAKYGLSFLWLN
DWDPVQQNYGAVVPIIGTLLTSFIALLIAVPVSFGIAIFLIELAPTWLRRPLGTAVEMLAAIPSIIYGMWGLFVFVPVFQ
QYVQPALIATLGSVPIIGGLFAGPPFGIGIFTAGLILSIMIIPFIAAVMRDVFELVPPMLKESAYGLGSTTWEVMWRVVL
PFTKSGVIGGIMLGLGRALGETMAVTFVIGNAFRWSGSLFSPGNSIASALANEFNEAGGIQKSALLELGLILFLITTVVL
AFSKMLLVRLSRAEGRQA
>SEQF2266_AEE66475.1 phosphate-binding periplasmic protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFKRVFKQISIGAALSAAVFAAQAADVTGAGASFPYPIYAKWASDYKAATNNAVNYQSIGSGGGQQQIKAKTVDFGASDD
PLKAEDLEKNGLLQFPAVIGGTVPVINIDGIAPGQLKLSGAVLADIFLGKVKKWDDAAIKALNPDLKLPSADIVVVHRSD
GSGTTFGWTNYLSKVSPAWKEQVGEGKAVKWPTGQGGKGNEGVAAYVGQLKNSIGYVEYAYAKQNKLAWTQLQNKDGKFV
QPEQKAFAAAAANADWKSAPGMGVVLTNEPGADSWPVTAATFILVHKSQDKPVQGRAVLEFFDWAFKNGAKSAEALDYVP
LPEAVTTEIRAAWGEVKGADGKAVWQ
>SEQF2266_AEE66476.1 polyphosphate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSRPPSEPLLLNRELSLLKFNERVLAMAENPRVPLLERLRYVCIVSSNLDEFFEIRISTLKEQQRQTPTLVGPDGMTAD
EAFERVQVKVHALVASQYALLNDDILPRLQAEGIVLHHASEWNAQQQEWAREVFNRDVMPLLTPIGLDPAHPFPRVYNKS
LNFIVALSGADAFGRQASIAVVQAPRALPRLIKMPPEISGHPDGYILLTSLLRAFVGELFPGLEMLGCYQWRVTRNSDLF
VDEEEVTNLRHALQGELSQRNFGAAVRLEVDKLTPPDLEAYLQREFSLAPEDTYRVSGPVNLSRLMQLCNSNTRPDLLFP
AYLAPVPAPFDRVGEKPAELFAAVAEQDRLLHHPYQSFQPVIDFLTAAALDPDVMAIKQTIYRTGEDSELMQILLAAACA
GKEVTVVVELMARFDEQTNINWAARLEEVGAHVVYGVVAHKTHAKMALVLRREKGRLRRYAHLGTGNYHPRTARLYTDFG
LLTADPRLCEDMDKVFTQLTGLGARRSLKALLQSPFSLHDGMVSLIRAETRAARAGKRARIMAKMNSLLEVQVIEELYKA
SQAGVKIDLIVRGVCALRAGVPGLSENIRVRSIVGRFLEHSRVFYFYADGAETVYLSSADWMDRNFFRRVEIAFPVYDKT
LRKRVIDEAFTYALRDNQLAWQQQADGTYARVRNRREAYDVQEALIQRLGQDG
>SEQF2266_AEE66477.1 exopolyphosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDHLLAAVDLGSNSFRLSIGRVVQQDGTAQIYQIDRLKETVRLAAGLDQDKNLGEDALARALAVLERFGERLRSFHPSRV
RAVATNTFRVARNTRDFLPRAERALGFPIEVIAGREEARLIFSGVAHSLPPSLNRRLVIDIGGGSTEVIIGKGVEPNLMS
SLYMGCVSFSRQFFGDGVVDSHQMKQAELAARREIEVISKQYRKTGWKEAYGSSGTAKALYAILTECGFSTRGITRAGLA
KLKDRIIRSGRVIPAELPGIKLERADVLPGGLAIMSALFDELNIDVMHTGDGALRLGVLYDLLGRDDEHDKRHESVQQFM
KRYHVDANQARRVRQAALALFDVLLPDGDGHERAELRLALGWAADLHEVGLSIAHNAYHKHTAYVLEHADMPGFSNDEQE
LLALLALGHHGKLSKLESLVANRSQWIAILCLRLAALLFRRREDITPLPLAVSIKGTSIVVRAQQAWLNRHPLSDFTLRA
EDGEWSKVGFSFELLET
>SEQF2266_AEE66478.1 hypothetical protein BPTD_1067 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLELVRIDTGSTAATAWPGAAPRTLAVGLARTAEEVEQIQRLRYDVFTEDMGAVFPQAQDGVEQDRFDQWCEHLMVRELD
TGRVVGTYRILTPEKAREAGGYYSESEFDLSGLGALREQLVEVGRSCTHADYRNGAVIMLLWSGLAEYLRRGGYEYVLGC
ASVSLRDDGVTAAEVWRNVARHLDDPALPRVRPLHRYPIERLNSTLPARVPPLIKGYLKLGAKVCGEPAWDPDFNAADFP
VLLSMAGMDERYRRHFGLDREARR
>SEQF2266_AEE66479.1 phosphoglucomutase/phosphomannomutase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQRKYFGTDGVRGEVGGPVINAAFALRLGYAAGRVLAREHREHASGRGRNRPQVVIGKDTRISGYMLESALEAGLSAAG
IDVLLAGPVPTPAVAYLTRTLRLAAGIVISASHNPYQDNGIKFFSAHGMKLPDDIEAAIEQAVDEPLGCVGSEELGRARR
MADAQGRYIEFCKSTFPHDLDLNGLKLVVDAAHGAAYNVAPHVFRELGAEVHAIGVSPDGFNINKGVGALHPESLAEEVR
ARGADLGIALDGDADRLQMVDGTGRIYNGDELLYAIVRERMQRGPVAGVVGTLMTNYGLERQLQQIGVGFERANVGDRYV
LEQMQARGWLYGGESSGHLLCLDCHTTGDGTIAALQVLTALRRADATLAEWVADLRMYPQRMINVPLAPGLDWKTHDGLA
RARGAVEAELAGRGRVLIRASGTEPKLRLMVEAEDEALAQASAQKLADSLGA
>SEQF2266_AEE66480.1 dihydropteroate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANNFQCGRFEFDLERPLVMGIVNVTPDSFSDGGEHADTDSAIAHARQLIDEGAHILDLGGESTRPGAQPVSAADELARI
LPLIEGLRDCGVPLSIDTFKPEVMRAVLDAGADMINDIYGFRQPGAIDAVARSRCGLCVMHMKGEPRTMQEAPEYADLMG
EIGVFLGARAQRLRAAWVDPRRIVLDPGFGFGKTMDQNYQLLRRLASLRVSSYPLLVGVSRKSMIGAATGKPVGDRLAGS
VAAALACVARGAAIVRVHDVAATVDALKVWQAAEQGAVPT
>SEQF2266_AEE66481.1 cell division protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNSFSKVAVWMVIALVLFTVFKQFDGRAQTQDGVSYTQFMDDAKAGRIRKVDVQGDVLYVTPDAGRPYSLTSPGDLWMV
SDLLKYGVQVSGKAREEPSLLMSIFVSWFPMLLLIGVWIFFMRQMQGGGRGGAFSFGKSRARMLDENTNQVTFADVAGCD
EAKEDVQELVDFLRDPSKFQKLGGRIPRGVLMVGSPGTGKTLLAKAIAGEAKVPFFSISGSDFVEMFVGVGAARVRDMFE
NAKKHAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQMLVEMDGFESGQGVIVIAATNRPDVLDPALLRPGRFDRQVV
VPLPDIRGREQILKVHMRKVPLSPNVDATILARGTPGFSGADLANLVNEAALFAARRNGRTVDMSDFEKAKDKIIMGAER
RSIVMPEEERKNTAYHESGHAIVARMLPKTDPVHKVTIIPRGRALGVTMQLPETDRYSMDKERLLNTIAVLFGGRIAEEI
FMNQMTTGASNDFERATAIARDIVTRYGMTDELGPMVYAENEGEVFLGRSVTKTTHVSEATMQKVDSEIRRIIDEQYGVA
RKILEDNRARVEVMTSALLEWETIDADQIDDIVNDRPPRPPKTPQGPSDTFDTPPTGLAAGGNTAAAV
>SEQF2266_AEE66482.1 ribosomal RNA large subunit methyltransferase j [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKNKFSKDWIHQHINDPYVKLAQQKGYRARAAFKLLEILDAEKLMRRGDVVVDLGSAPGSWSQVARERLAGPGGVVDGR
IIALDLLPMEPVAGVEFIQGDFREEEVLEQLARMVDGQPVDLVISDMAPNLSGVGVADSARIQHVCELALEFACAHLKPN
GALIVKAFHGSGFSQIVQSYKQRFKRVVERKPKASRDKSSETFLVARDLK
>SEQF2266_AEE66483.1 hypothetical protein BPTD_1072 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPILELTSRERSDLRSAAHPLRPVVLIGDNGLTDAVLKEIDLALTAHELIKVRAGGDDREAREAMLATICDTLSCAAVHH
LGKTLILFRPDLRAAAAKAAADTPAKRRPSEPHTPKKMAAEGKRLTKTRPARKAAEAAAPAAGARPGRDDLNQAGRPARP
STRKASPGHAIPRRSGSALSLRAGARGGLAGRKPARANKR
>SEQF2266_AEE66484.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66485.1 hypothetical protein BPTD_1075 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAVSLPAISGWQWVRDGLRLFMKQPLAMFTWAMAISLLLLFATYTPLVGPLLFVALMPSITLMTLSACKHVEADRVMLP
SMWLQPLKKPGVFKKLFLMGMLYVGLCLAAGLLAFLPFSSSLAEGVRMASANNLAPIMTAMRAPLLVFTALYVIIAAVFW
HAPVLVGWHGLRLLQALFFSGIACWRNKWPFLVYGVVWILVFLFIDLCIGLLIGMGVPDTLAGTLQVPVTIIAGGVLYCS
FYPAYTSVFGVNDAHAGLDNSDSAHA
>SEQF2266_AEE66486.1 homoserine kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVFTSVSDQDARTLLARFDLGDLVSLRGITAGIENTNFFLNTTRGEYVLTLFEVLTQEQLPFYIELMYHLAARGIPVPQ
PQTLRDGTRLTTLHGKPCAIVTRLPGGYEPAPGPDHCRLAGATLARAHLAGQDFPLRQPNLRGLPWWQATAPKVLPFLEP
GQARLLEAELADQQAHAATALWQSLPSGPAHCDLFRDNVLFAGTFDDPLMGGFIDFYFAGCDTWLFDVAVSVNDWCIVRD
TGEFVPELVHGWLQAYAEVRPFTDAERQAWPVMLRAAALRFWLSRLYDFYLPRPAQTLKPHDPRHFERVLQARHRHPAPD
LPKSEAAA
>SEQF2266_AEE66487.1 tRNA-dihydrouridine synthase A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSPDWRLCVAPMIDVTDRHCRYFHRLLAPRARLYTEMITTGALLHGDVARHLDFDAAEHPVALQLGGSEPDALAQAARL
GRQWGYDEINLNCGCPSERVQRGAFGACLMAEPALVADCMKAMQDAVDIPVTVKHRLGLDYDESYGFVRDFVGQIYDTGC
RVFVVHARNAVLKGLSPKDNREIPPLRYDVARQLKRDFPDCVIVLNGGLADAQAAQAVAGEFDGVMLGRAAWHTPRVLSE
VSLQWWPAIRLPSDAQVVDAMMQYAATQIARGVPLRVMTRPLLGLVNGQAGARRWRRLLSDPVRLAANDPSLLYEAWRSL
QGAPRERDACADPLPAV
>SEQF2266_AEE66488.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66489.1 hypothetical protein BPTD_1079 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKVSEILRVKGDTLYTASPDTHVSVAVQTMSEQDIGSLVIMESGMLAGMLTFREIIRHIDQHGGNVGDTTIRAIMDDAP
VSVSPNTSADEVQRLMLEKHARYIPVMDGPTLLGVISFYDMAQAIVAAQQFENNMLKAYIRDWPMESAPSKP
>SEQF2266_AEE66490.1 hypothetical protein BPTD_1080 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEPHAESAAAGQAAPPEKRRASWFTRMGRVVRFAGQRADEQKLLQVASSLTFTTVLAIVPMLAVVLSLFTAFPVFQEFRV
ALEDFLANSLMPPSVSDNIMDYLNQFARQATRLTAIGGAFLIVTSLLLIMTIDKTFNDIWQVTRQRPLPQRALVYWAVIT
LGPVVAGASLWATSFVARESLGLVRDVPEAVSVAISFIPLVLTGLGFAALFVVVPNRRVYWKDALVGGFGTAIVLELMKA
GFAYYLTRFPAYTVIYGAFATLPIFLLWIYLSWLAVLFGATVAASAPLIRLGRWEINRHAGAPFIDALGVLRVLHAAQGS
RPAGRSANALAKRLRLHHDELNAVLEALEDMGLVARTAEQRWVLTCDPRTTTLEPVFDRFLLDRGQPRLRDEPEIAAVAA
GVLGQGPDPTLADLAGVAQNTDIGPAAAVLQLETGKK
>SEQF2266_AEE66491.1 hypothetical protein BPTD_1081 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAELNPTLRRGAVACLLALIVLCVAWETVLAPIRPGGSWLFLKALPLAFPLRGVLRGNLYTFQWAAMLVLLYLMEGVVR
AMSDPAPLSAALGGVEIVLSGGFFLCAILYVRPAKRAARRSRA
>SEQF2266_AEE66492.1 hypothetical protein BPTD_1082 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKWLRLQDLPTDNSFAALPAEFYTRLQPRPPAAPRLLHANAEAAALIGLDPAEFSTQAFLDVFSGHAPLPGGDTLAAVYS
GHQFGVWAGQLGEVRGPAGGWELQLKGAGMTPYSRMGDGRAVLRSSVREYLASEAMHGLGIPTTRSLALVVSDDPVMRET
VETAAVVTRMAPSFVRFGSFEHWSARRQPEQLRVLADYVIDRFYPECRVAGAGRLDGEHGEILGLLAAVTRRTALLMADW
QAVGFCHGVMNTDNMSILGLTLDYGPYGFMDTFQLGHICNHSDSEGRYAWNRQPSVGLWNLYRLASSLHTLAPDPEALRA
VLDGYEAVFTQAFHGRMAGKLGLPQFLPEDETLLDDLLQLMHQQGADFTLAFRRLGEAVRGQRQPFEDSFIDRAAAGAWY
DRLAARHASDGRAAQARAAAMDEVNPLYVLRNHLAEQAIRAAARGDAGEIDILLKLLRNPYKHQPGYDAYAGLAPDWAAG
LEVSCSS
>SEQF2266_AEE66493.1 two-component response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVADGLLRIGLLEDDEDFRDELALGLGGYGFNVVCACGDAPSLYRFLQSQSCDIVILDANVPGEDGFSVATRLRAQSTT
GIVMLTGRGALEDRVRGLEGGADVYLTKPVDLLELSSVIRSLARRMRLARGAQGQAPASAGDTQRGVGGWSLQEGGWVLV
GPDGVSLHLNAQERIFMTSLLQSGGDAVTRQMLAEAFQPGNPDDFEPRRVDVMVSRLRAKAQSAGFKLPVLSVRGQGYVF
AA
>SEQF2266_AEE66494.1 two-component histidine kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSISRRLFLSVVLLAGLLVIGTQAAGLAANYRASVERQKRHVETAAASLAWVLSQSHTTPAQWQTLATDLQRHGGYALVR
IQEHYTGRMIEAGQLSEAPARADGSLQQGRASQIVATRTFRSADGTYVGSVAVYNPVIPILEAPFLTESVAQLVLIVAGL
LIWYSYMSRLHDRLQRGPLKRLAHNLAHIGQAGVDPKLAEGLPRELQPLGTALVQSHQRVHDQLRQQRARIDALENETYH
DPVTRLPNRKFFNESLRRAVQRDGGVDGHLLIFRQRDMAEINRQMKREATDQWLRLACAQLSKTIKEQAGAGAVLVRING
SDFAALLPGLPSPRAAVLAERLRRELRVLRLPLRTHGWCRWAMVLTPYTVGEQVSDILARLDHALMRAEIAESDEVEPAF
SQTGNRIDGEYGWQDILTRALEQHRFFLTLYPRQDAEGQVLHTEAQLTLRDQDSPEPLHAQLFMPPAARLGLSADCDIQA
IRMSMDQLVARDGDMVVRVSLPSLEQAHFLKRLEDVLRDRPEQAGHLIIEIDAHGLVDYFHNVQALCEIAARTGVRVGVR
RLSEQFAALERLHQLPLAYLKIGGSFVQGITRSPGNQQLADTVIQVARTLDIPAYAEDAEEPVARELLQAIGFRLMQEAD
NADFLAPRHNWIADLPAAPAAAEDNGDTAAHAPTRTRATDGRPWPPHELGMQRKRQEQSDRRLAEVARALEAQRQVHALL
SHELRTPAATISAAAQSLEIILAGSGQEVDSRLARIRRAVTRMIELMNQVLSPERLRDQALTLRPEPIELGELARDTVEG
MRLDTAHPLVLNAEAAVPAWCDPLLTALVLRNLIHNAVKYSPADQPVHIDVGLSYGAHGATAWVAVTDHGPGISDDESQR
IFEEHYRRAAHRETPGSGLGLHLARQICQSQDGTLTVQTQLGQGARFVMTLPTPGQAYTDGGNAQAANT
>SEQF2266_AEE66495.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66496.1 high-affinity branched-chain amino acid transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQSEQDPLLRVDGVTLAFGGVKALTGVGFAVSSGSITTVIGPNGAGKTSLFNTISGFYTPDAGSIHFLGQDITRLPAPR
RARLGLARSFQNIALFRGMTVLDNIKLGRHAHLRSNVLDALLYLGRARREEVALRADIETRIIDFLEIDHIRHAPVAALS
YGLQKRVELARALAMQPRILMLDEPVAGMNREETEDMARFILDARAEWGVTVLMVEHDMGMVMDLSDHVVVLNFGQVIAD
GTPAQVQADPEVIKAYLGAGEVGELRRRLAAQAA
>SEQF2266_AEE66497.1 high-affinity branched-chain amino acid transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDALFFLEVTLAGLGGGALYALAALAFVIVYKATRVVNIAIGEFLMMGAYAFYAFAADMQWPVWAAIGGAILASALLGAL
VERVAIRPMLGESPISVFMITVGLASILVGVVELVWTADQRRLPEFMPRDPVMIGEAFVAPKVFYGFWVAVGLAALVLLV
FRYWRGGVALRATAADQGAAYAMGINVPRVFSLAWAAAGAMAAVARLIVGAIGGISSSMGAFGLSVLVVVIVGGLDSVAG
ALLGGLFIGLVEAWAGAYLGGEYKLLVTFVVLVATLMARPYGLFGTREIERL
>SEQF2266_AEE66498.1 putative amino acids binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAAPVAQAAEDLVIGGSIPLSGVFAFAGQGIHAGIGDYVKMVNEEGGVAGRKLVYVPEDTAYKVDASVAAFKKIASQNK
VNFYYGDSTGFSKTINAELNRAGTMIMTGASFATELNDPAKYPNQFMLGPDYTEMFGILLRYIAKEQPGAKVAFVYSDTE
FGRDPITSSRAVAEKLGLKVVTEIMTPPGSVDVSTEVIKLRRAAPDYTIFHGYVLAPIPEFVGQGKRMGLKTRYMGTFWT
MDNSTVMQMGEDADGFMGVMPYRYYYDDAADAPMLKKIRAMRPDYQSTGYMQGFLAAMLFAETAKRTLAADKPLTAANMK
ATLDAIKDFDTGGLIGVPISIKGNSIPVGRIYRADAKQKKMLPVSDWIVLD
>SEQF2266_AEE66499.1 high-affinity branched-chain amino acid transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTSAAPVLAINNIEVVYNKAVQVLRGLSLEVPRGGIVALLGSNGAGKSTTLKAVSRLLELEDGALVSGAIRFQGSDTAG
RAPQALVRAGLAHVMEGRRVFEDLTVEENLVAAAYALSGRAGARPDFDLVYGYFPRLYERRRGLAGYLSGGEQQMLAIGR
ALIAQPSLMLLDEPSLGLSPMLVESIFSIIARINAEQGVSMLLVEQNASVALAVAHYGYIMETGKVVIGGSAERLAGDPD
VREFYLGVGGGGEARGFRQLKHYKRRKRWLS
>SEQF2266_AEE66500.1 putative long-chain fatty-acid--CoA ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRASMHPRAEGLPRGDWPALTLPQMLREQARRQPARIALRQKDYGIWQPIDWATYWRRACQVALGLRAAGLEPGGKVAI
IAENRLEWLLAQMGAGVLGAVPVGVYCTSPAAEVGYVLEHAEVDMVVCEDQEQTDKVLEVAARLPGLRRIVVMETKGLRN
HAEAERARMISFAELEARGAQCGAAEQARLEQALDAQTLDDVGLMIYTSGSTGKPKGVMISYRNMRGVAPGIADRLDMDA
GSVHLSYLPLCHVAEQMLSTFVPVYLGSQVNFGESIRTVQEDLREVAPTVFLGVPRIWEKLHAAISIKMQESGRLRRWLY
ARALRGCAPFLELSRARYGWRERLVYGWHYALILRALHNFVGLRRVKVAMTGAAPIPPEVLRYFRTLGIPLIEVYGLTES
TGMIFGQHPDRVRVGTVGEPTLGVQARVGEQGELLVRGEMVFHGYYRNPQASADTVCDGWLHTGDVVALEDGQYRIVDRL
KDIMITAGGKNLTPSEIENAVKGSPYVKECIAIGDQRRYVAALIQIEYDTVAKWAELNGIAYTHFRSLAEHPRVRQLVHG
EVERANAALAQVARVKRFHLLVKELDHDDGEVTATMKVRRASIAQAYRSEIEALYRQEEAA
>SEQF2266_AEE66501.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHASSRGTEEAAGSPRRADVIATAGELFRLHGYERTTVRELARAVGLQSGSLFHHFRSKEEILVAVMSEGIEEVLEQGAL
ALAHYQDPGARLAALFRVHMWSMLKGAGGDAMNALVYEWRSLSPAARGGVKALSDRYEDMWQDAVDDALRAGLVDGDARV
IKRYLLGGLNLTVQWYRPQGRLAPGDFIEAMLRAALPGLPPGTGAWPLRD
>SEQF2266_AEE66502.1 hypothetical protein BPTD_1093 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAALAYLLLSRRARPAAAPRPLRALPAGRRRMPLYLGVAAVLALAGALLSAFLLVTAMAGGSGGGYRGQADFLQQVAIVL
LAIGVVCAIAALVSFFRQRG
>SEQF2266_AEE66503.1 lysyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDQSPAPTAQDENRLIAERRAKLARLRETGVAFPNNFVPDAHAADLHARYDGLDQEALTAAAVTVKVAGRMMLKRVMGK
ASFATLQDGSGRIQIYLERGTLGEEAYAAFKQWDIGDIIAIEGPVFKTNKGELSVHANSARLLSKSLRPLPDKFHGVADQ
ELRYRQRYVDLIMTDATRRTFEARSKAVGGIRQAMLNAGFLEVETPMLHPIPGGAAAKPFVTHHNALDMQMFLRIAPELY
LKRLIVGGFERVFEINRNFRNEGVSPRHNPEFTMMEFYAAYADYRWLMDFTEDLIRQAAIAATGSAVLSYQDRELDLSQP
FDRLTICEAILKYAEGYTQAQLDDPAFVRAELRKLGANVEGPPLARAGLGALQLALFEETAEAKLWRPTYIIDYPVEVSP
LARASDTRDGITERFELFITGREIANGFSELNDPEDQAERFRAQVEAKDAGDEEAMYFDADYIRALEYGMPPTGGCGIGI
DRLVMLLTDSPSIRDVILFPHLRRED
>SEQF2266_AEE66504.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDTVAILTGASRGLGAALARGLLAPGTRLITLARRADPDLEAAARTRGASLEQVQVDLSDPAAAGAAAKRLCAALPRDA
RRYLLINNAGTVSPVAQAAGLTDGAAIAGALNLNVTAVVLLTARFVAALQGLPADRRVLNISSGAGRNPNAGWGVYCAAK
AALDMYSRVLKQEQGQDGVRVVALAPGIVDTDMQGAIRASDPADFPALERFREFHATGKLSAPADVAARILAYLDRDDFG
TTEIDDIRNYQ
>SEQF2266_AEE66505.1 peptide chain release factor 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGSGLADSCELVELALADSDDATLEAIEHDADRFQEKLETLEFRRMFANPADPLNCFVDIQAGAGGTEAQDWASMLLRQY
LKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEV
EVNPADLRIDTYRASGAGGQHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLED
SKTDVGWGHQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQGV
>SEQF2266_AEE66506.1 single-stranded-DNA-specific exonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVSPRLIIRTADLQACQHLEAAGIHPLLSRLWAARGVIHPEQTRMAWPALLPPDRLTHSAHAAAVLADAIEQGKRLLIVA
DYDCDGATACAVGLRALSAMGADVDFLVPNRFETGYGLSPAVVELACRHRRGKPDIIITVDNGIASVDGVAAANAAGIGV
VITDHHLPGDTLPEALAIVNPNQPGCGFGSKHLAGVGVIFYMMLALRAELRRRGVYAPDGGPRLDALSDLVALGTVADVV
KLDANNRLLVTQGLQRMRAGRMQPGVRALFAVAGREPRTASGFDLGFALGPRINAAGRLADMSLGIACLTTDDEAQTLEM
ARELDNINRERRTIEAEMRDQALAAMEAPDAAAGATVCVFDPGWHQGVVGLVASRLKEKFWRPTLAFAPAGEDELRGSGR
SIPDVHLRDALDLVSKRHPGLIRKFGGHAMAAGLTLGSGDFAAFAPAFDAAVRELTGRDRFEPLLETDGSLESGYANAEV
AGLLQQQVWGAGFAAPLFLDEFTVRSQRLVGGKHLKLALERGHQRFDAIWFGHDQSLPERIQAAYRLEQNIWNGMVSVQL
VIEHAA
>SEQF2266_AEE66507.1 hypothetical protein BPTD_1098 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALTGTRTTIAAMLIVIPGALPAAAVAPELARLLPQHAPTLHGWLQAASARVQAFDAARQGCTPFEGWQLEQAGYQPQPG
LPLGAGLGPLRAAGGTPGQPVWLADLAHLMLGADQAALLDPALLDLRADESAQLFEAAAPLFADSGFGATPIDAARWRLT
LPAGMAPQTASPAAVAGQRLRAWWTQDVAMRPWRRLLNEIQMVWYEHPVNEARAARGAAPINALWLYGGATPWPAGAPAP
ARVCDELAATQRAGDWAAWLDALAMLDAAQLAPLAGPHGRPVQPLQLLLLGDDRRAALTLKPRAGLARWLPAPKHNWNAW
WSRPV
>SEQF2266_AEE66508.1 lipoprotein releasing system transmembrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARIRQRRGCRDRFISFIAATSMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLPHIELYIPGAAPERVLQQWRQFAQA
ARANPEVKGEAPFVAAQGMLVRGQALRGVQVRGIDPATEGNVSDIPRQMVSGKLSDLVAGGFGAVLGSDLADGLGVKTGD
TVLMLAPQGSISPAGFAPRMRQFTVVGIFSSGHYEYDSTLVFIDDEDAAKVFRESGTAGVRLRVADMQRAPEVAAELTKV
LPPYVMAADWSRNNRTWFAAVQTEKRMMFLILALIVAVAAFNLLSSLVMAVKDKQSDIAILRTLGAGPGEVARIFLVQGA
LIGVVGTLLGVAGGIAIAYNVDVIVPFIERLLGVQFLPREVYFISALPSDPQADDIITIGLTSLVLSLLATLYPSWRASR
LQPAQVLRHD
>SEQF2266_AEE66509.1 lipoprotein releasing system ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEPNDTGPALQAEHLGKVYDEGPARIEVLSDVSLSVARGEMVAIVGASGSGKSTLLHILGLLDVPSSGTVSVDGVPAAG
LSEKRKSALRNRSLGFVYQFHHLLPEFSALDNVAMPLIVRRENRDRARAQAREVLELVGLAAREEHFPGQLSGGERQRVA
LARALVTRPACVLADEPTGNLDRHTAHNMFELLTRVNRESGTAFVIVTHDPELAARADRQLHMENGRLQPD
>SEQF2266_AEE66510.1 putative deoxyribonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIDTHCHLDAAEFDADRMAVARAAREAGVQAIVIPAVERANFATVRQLAHAVDSGAYALGIHPLYVARARDEDLDSLRR
AIESALPDPRFVAIGEIGLDFFVAEIASGAPRERQERFYAAQLDLAAEYGLPVLLHVRRSQDILLKHLRRRPGVPGGIAH
AFNGSAQQAGAFVEQGFALGLGGAMTYPRALQIRRHAADIGLDHLVLETDAPDIPPAWLYEPERRNTPGQLPRIAAELAA
LRGQAVADVARATTTTALRVLPRLGALLQDRAATP
>SEQF2266_AEE66511.1 serine protease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQASARGMGLRITSLAAALLGVYGAAGAAENRLECIGACPPGQPVAGAHYSGTNLSANREWVVYGEGSNAVFTLQGGSV
TASGGLMGAVNAADGARVYLNQVSVRTDAGNGWEAPGVRAEYGALVNVRGGSIATVGGGSYGVQSLDSGTMIELNGTDIR
TTDAYSDGLRAEFGGSIRAVGLTINTTGEHAVGAMGADDGTIALRDSRITTSGVDAYGLGTESQVLSPGGVLQVSNTAIQ
TSGKNAHGVYLQGGSSLNMSGGSIRTTGSGAAGLRVSNGSSVALNGVEVVASGPSLLSTLSATRQQSIVVGAGSNLTRND
GRLLLVRRVAGGELGQVTLTLKSGSYAAGNIENLAADGSRESSALTIVDVQSGAQWAGLVIDDTTAIVNGSQSGQHSGFS
TAGDMVLEGGSAPVTFTGVSNIGGSSSLGAGSQTTFGGATTIGQSLAVLPGGSVAFNGPLTIGESVTEGQGTALSFNAPA
IIGANVQGAGGAAFTFSGPAQVGGSVQGLDGASFRFSTSAPTAIAGGLSLAGGSSLGGGSPTTPIVVIGGADAVSGAILG
GNLDIGGALRMTGASLAPGNSIGTVTVGSVGALSGSTYLAEVNAKGQSDLLVVRSGNVDLAGVSLVVGQENGTGGYVLNH
DYTIIKTEAGKIVGEFAAASLDESLASTLVKLDPVKYGAQATQVSLSPDADKLAAARAGLIRNQSAVLDGALSVAGRNAS
ADAVMLMSDTGQRADALDQLSGEVHGSAVSALYSNTQLLNRTVARRMSANLGAGLLAGAPTAQAAGPAAASAMPGTAAYP
LWADVVDNWSSFDAKDNAAKAKSNTAGLFIGGDAAVGAGWRVGGALGFTDGRIKADAVDSRSDVTSYTAALYGGNSWAAG
KGKLNFLAGVGYTHHDIDSRRSVDVGGAQTLKADYKANTTQLFAELGYQVPVGASSSVEPYAGLAWFNNHSDSFDEDGGP
AALHGSGQTDQITTFTLGLRGNTALQLGATETRLSAGLGWRHANGDVDATRKLAFIQGGGTAFTVAGSPVAREAAVLDLA
AEVDVGRNAALGLAYGGQFGNGNKENTGSLYLKVRF
>SEQF2266_AEE66512.1 hypothetical protein BPTD_1103 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGAFCLFEECVAGIASRHPQWADVALPGDIQAEVLPRAPLPVHGAPAARYPGLFDVPD
>SEQF2266_AEE66513.1 hypothetical protein BPTD_1104 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66514.1 putative outer membrane ligand binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKNIYRVVWSLVRGAWVVAGEWARAGRKSSSPRRQNRQRARRGVAAMVGGSILAQALLPLSALAQGAPTLRPARVAQEE
AGQDAAWTRKLAAQAESLARRQAERQPGARVDGDYLKREAQAQVNDVLRDGVNLARESGLPFLRNLQGGLSHDFESGRTS
LQLNTIDEVYRAGRNTGLLQLGAHNQNDRPTANAGAVYRREVNDALMVGANGFLDYEFGKQHLRGSVGLEVIAPEFSLYG
NVYAPLSDWKGAKRNNRREEKPASGMDVGVGYRPAFAPGLSLSATHFRWNGAEVDYFDNGRTQAGAKGFKVGVEYRPVSL
VSVGLEQTKVIGGGRETRMQLGLNINLSEPLSKQLRRDASGTPAFSPDARRHALVERENRIVLNTRRKEIILPLVVSKVS
TLQADGRVTVIGATQPFATVTVRMPDGMTGTATADASGRFAYTSAGDQPSGVLALRARNAEGDSSREVTYRYVDEVVLGD
LQVAVMALVPLPADRALEVRGKTEPKVDVKVSFSNGESVLAKADAKGLFTVRSTRKVTQGKVLVQATHPQTRKEARAVAD
YLPPATLAPTIDAVTAQADTGRVTVTGQAEPGAQVDVHFPDGTAKTVDAGADGAYAATSDGDMVSGDIHAQATDKAGNQS
PEATRHYGDTTDITPPAAPTIANVATDATSGRVTAAGMAEPGANVTVNFPDGTRKTVVAGGDGAYTATSDRDMVSGDIRV
QATDKAGNQSPEATRAYADAVDRTAPEVPTVTHVATDAKSGRITVTGMAEPGANVTVNFPDGTRKTAVAGGDGAYTATSD
GDMVSGDIRVQATDKAGNRSPEATRAYADTVDTTPPAVPTITDVTTDATNGRITVTGVAEPGANVTVDFPDGTRKTVVAG
GDGAYTATSDRDMASGDVRVQAIDKGGNRSPEATRAYADTVDKTAPAAPTITNVTTDAASGRITVTGMAEPGANVAVNFP
DGTRKTVVADGAGAYAADSDGDMVAGDIHVQATDKAGNRSPEGTRAYVDTVDKTPSAAPTIVRVTTDRSSGVVTVAGTAD
PDNDVTVQFPDGGRKTVKAGKDGSYSVTSDNDIFSGIIQVSARNPAGNASPEVRQDYRDEFVPANAITNIETNSRNGIVT
VSGKTSPDATVVVSFPGGDEARTRAKGDGTFSVSSPMDIPRGVVSLSTEVNGVQTVVATRTYEDKFTKGGLDFTAFLPYT
PKFNGVSTSDTSAVLLSIPRYFYSGGAPVAKIMPPEADGSEFAKRAAAAMRAQVTPGRDSSEYDVRVSWPAGTFTPADVG
QRADLAVKVFDKGTGKYMLLLAPVNFPY
>SEQF2266_AEE66515.1 hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQEPRLDFVTCASPTGFHRMAYWEWGDPLNDRVLVCVHGLTRTGRDFDHLARRLAGQWRVVCPDVAGRGKSDWLSNPALY
AVPQYVSDMATLIARVWPATLAWVGTSMGGLIGLGLAGAATMMRLARAMRPRPDGLPAQADDLRLHRLVLNDVGPRLNVE
VLQRIAGNVAAQDSYSTFEAAVAAMRQISTTFGPHTDAQWDELARHIYVRQGGGWVRHFDPALAVPLGAQVAQAFEAGER
ILWQAYDSLDCPVLIVRGQDSDLLSAATAGEMLARNPRARLHEVPGVGHAPTLMTPEQIEPIARFLQE
>SEQF2266_AEE66516.1 hypothetical protein BPTD_1109 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIAAPNVDLHCHSTVSDGSMPPAAVARRAHANGVDVWALTDHDEIGGVAEAAQAAAALGMRFVAGVEISVTWAGLTVHI
VGLRVDPANEALVQGLRDTRAGRAARAVQIGERLAGLGMPGAYEGALPFAGNPELISRTHFARFLVEAGYCPDVQTVFNK
YLGDDCPGHVPMQWASLAEAVGWIRGAGGCAVIAHPGRYKYSPMQFDALYDEFLQLGGTGIEVVTGSHTSEEARRYAEVA
RRHGFLASRGSDFHSPTESRVDLGRLPPLPPDLKPVWHDWF
>SEQF2266_AEE66517.1 transcription elongation factor GreB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKAFVKESDRDDEDDLPEAQALPAGTRNYMTPQGYARLRDELSHLMNVERPSVVQVVSWAASNGDRSENGDYLYGKKRL
REIDRRMRFLTKRLDIAEVVDPAAQPNRDQVFFGATVLYMDRAGEERTVTIVGVDEAEPLAGKISWISPVARALTKAHEG
DTVTLRTPGGVEELEILEVRYPDA
>SEQF2266_AEE66518.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLAGLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66519.1 serotype 2 fimbrial subunit precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPMQIPFQRALRLCLRAALAAIASAAHADDGTIVITGTITDTTCVIEDPSGPNHTKVVQLPKISKNALKANGDQAGRTP
FIIKLKDCPSSLGNGVKAYFEPGPTTDYSTGDLRAYKMVYATNPQTQLSNITAATEAQGVQVRISNLNDSKITMGANEAT
QQAAGFDPEVQTGGTSRTVTMRYLASYVKKNGDVEASAITTYVGFSVVYP
>SEQF2266_AEE66520.1 malic enzyme [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDENLTKLALDYHAYPTPGKISVTPTKTLANQDDLSLAYSPGVAAACMAIFDQGNDAASKYTSRSNLVGVITNGTAVLGL
GNIGSLAAKPVMEGKGCLFKKFAGIDVFDIELAENDPDKLVDIIAALEPTLGGVNLEDIKAPECFYIEKKLRERMNIPVF
HDDQHGTAIISSAAILNGLKVVGKDIGQVKLACSGAGAAAIACLDLLVHLGIKREHIYVVDSRGVIWEGRDENMEPNKRR
YAQKTEARTLADVVNGADVFLGCSTAGVLTPEMVKTMAAQPLILALANPEPEIRPELAKAARPDCIVATGRSDYPNQVNN
VLCFPFIFRGALDAGATRITEEMKLACVKAIAELAQAEQNDEVARAYAGQELSFGPDYIIPKPFDPRLIVQIAPAVAQAA
ADSGVATRPIEDIEAYRQKLMGFVYHSGQLMRPLFQQAKQAPKRVVYADGEDERVLRAVQTVIDEKLAEPILVGRPSVIE
MRIKKFGLRMVPGQNVEIVDPEDDSRFNDTWNGYYQLRGREGVTPAIAKAMIRKHNTLIGAMLLRRGDADALLCGVASKY
DNQLKYVEEVIGRKPGQTYGALNVLMLPNQTLFVTDTHVNENPSADEIANITIQAAEEMLRFGVMPKIALLSHSNFGSRP
TDSSRKMAHARKLVAERAPHLEVDGEMHADAALSESIRLQAYPDSTLKGRANLLVMPNLDTGNITYNMLKMTGSNGIAMG
PILLGSARPVHILTTSATVRRIVNMTALAVVDAQQEAAEG
>SEQF2266_AEE66521.1 2-oxoacid dehydrogenase subunit E1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCNAQAGATPPQIPDPDPVETAEWCEALDSLTQAGGPERAAYVLQQLLARATALGVRAPGITRTAYLNTIAADQEPPFPG
NLSLEERIASINRWNALAMVVRANQAHGELGGHIASYASAADLFEVGFNHFFRAPAPGFGGDLVYMQPHSAPGIYARAYL
EGFLNDVDLAHFRQEITAGAQGLRGLSSYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLEHRSLAMPSDRKVWGIF
GDGEMDEPESIAALTLAARERLDNLVFVINCNLQRLDGPVRGNGRIIDELETLYAGAGWNVIKLVWGGDWDALLRRDPDG
VLAGTFSHTVDGQFQTFAANDGAYNRQHFFGQDPRLSALVADWSDEAIDRLRRGGHDMVKIHAAYHRATHHRGQPTVILA
QTKKGFGMGTAGQGKMTTHQQKKLDDEALLAFRDRFALPISDADCLALKFYKPAEDSAELRYLESRRAALGGYLPRRRTE
APRLAPPPVADWARFALQAAGKEMSSTMAIVRMLTALLKDPQLGPRIVPIVADEARTFGMANLFRQVGIYSAQGQLYEPE
DIGSVLAYREARDGQILEEGITEAGAISSWTAAGTSYSVNGLPMLPFYIYYSMFGFQRIGDLIWAAADQRTRGFLIGATS
GRTTLGGEGLQHQDGYSHLAAAAVPNCRAYDPAYAYEVAVLVEHGMQRMLDEQCDEFYYLTVTNENLAQPDMPEGEETRT
GILRGMHRVRAADATPQVRLLGAGPMLDEAMRAAQLLRDEHGLDAEVWSVTSFSELARGGRGAERAQALGLPCPDGNWLA
QCLGDQATPVVAVSDYVRAVPEQIRAWVPGPYRVLGTDGFGHSDTRARLRDFFEVGAPWIVLHALDLLAREDSAWQPALQ
ARREQLQAATRNVPSWQS
>SEQF2266_AEE66522.1 transcription regulator AsnC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPHALDAIDRRILDLLQTDASLTNVELARRVHLSPSPCLARVKALEAAGIIRGYVALADPAQLGLNLNVFIQVSLEKQV
ESELERFQGAMADCPEVMECYLMTGDADYLLRVVVADMPGLERFIVNRLSRIPGVKNIRSGFALKQVKYQTALPLRQGSG
PQ
>SEQF2266_AEE66523.1 2-oxoglutarate dehydrogenase E1 component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTESESLSTSYLFGGNAPYVEELYESYLDNPGSVPDNWREYFDQLQHSPATDGQEATRDQAHAPIVESFAQRARANAFV
QRVAEPDLSVASKQVSVQSLIAAYRSLGSRWADLDPLKRQERPAIPELDPAFYGLTEADLDQVYSATNTYFTTASTMTLR
DILKALRDTYCRSVGAEFMHISDPAAKRWIQQRLESTFSAPVFSTEEKRHILQQLTESEGLERFLHTKYVGQKRFSLEGG
ESFIASMDEVVNHAGESGVQEIVVGMAHRGRLNLLVNIMGKMPGDLFAEFEGKHAEGLTDGDVKYHNGFSSDLSTRGGPV
HLSLAFNPSHLEIVNPVVEGSVRARQERRGDGEGKQVLPVLVHGDAAFAGQGVVMETLNLAQTRGYGTGGTLHIVINNQI
GFTTSDPRDSRSTLYCTDVVKMIEAPVFHVNGDDPEAVVFATRLALDYRMQFRHDVVLDIVCFRKLGHNEQDTPSLTQPL
MYKRIGHHPGTRKLYADKLTTQGVLAEGDADQLVKDYRQLMEDGQRTIEPVLTDYKSKYAIDWSPFLGAKWTDQADTAVP
LAELKRIGERITTVPEGFTVHPLVAKLLNDRRNMAKGEVNLDWGMGEHLAFATLVASGYAVRITGQDSGRGTFTHRHAVL
HDQNRERWNDGFYVPLQNVSEGQAPFTVIDSVLSEEAVLAFEYGYSSAEPNTLTIWEAQFGDFVNGAQVVIDQFITAGEA
KWGRQSGLTLMLPHGYEGQGPEHSSGRIERFLQLCADHNIQVVQPTSAAQIFHLLRRQMIRPFRKPLVIFTPKSLLRNKD
AGSPLTDLAGGSFRPVIGEVDESIKAASVKRVLACSGKVYYDLVNARRERGADHVAIVRVEQLYPFAHKAFETELRKYPK
ATEVIWVQDEPQNQGPWFYVQHHLYENMADGQKLGYAGRAASASPAVGYLAKHQEQQKALIEQAFAAKYKGFMLTK
>SEQF2266_AEE66524.1 dihydrolipoamide succinyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAITDVLVPQLSESVSEATLLTWKKQAGAAVEADEILIEIETDKVVLEVPAPSSGVLSEIVMGDGSTVTSGEVIARIDTA
AKAAAAPAAAAEAPAAAAAPAAAAPAAASSAASGVASPAAAKILAEKGVDAASVAGTGRDGRVTKGDALAAGNAPAAKAA
APVAPPTLSLDGRPEQRVPMSRLRARIAERLLQSQAENAILTTFNEVNMQAVMDLRARYKDKFEKEHGVKLGFMSFFVKA
AVAALKKYPVLNASVDGKDIIYHGYFDIGIAVGTPRGLVVPILRNADQLTIAEIEKTIADFGKRAADGKLGIEEMTGGTF
SISNGGVFGSMLSTPIINPPQAAILGIHATKERPVVENGQIVIRPINYLAMSYDHRIIDGREAVLGLVAMKEALEDPQRL
LLDL
>SEQF2266_AEE66525.1 dihydrolipoamide dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKQFDVVVIGAGPGGYIAAIRAAQLGMSVACIDAWQNGQGGPAPGGTCTNVGCIPSKALLQSSEHYEQANHHFAEHGIE
VKGVSLKLDTLIGRKNTVVKQNNDGILYLFKKNKVTYFHGKGAFAGQVDGGWSIKVTGTTDADLVAKHVIVATGSSAREL
PGLPFDEKNILSNDGALNIGAVPKKLGVIGAGVIGLEMGSVWRRLGAEVTILEAMPEFLAAADQQVAKEALKSFAKQGLD
IQTGVKIGEIKAAAKSITVPYVDAKGAEQKLVVDKLIVSIGRVPYTGGLNAEAVGLKLDERGFVAVDEDCKTNLPNVWAV
GDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFATVPWVIYTSPEIAWVGKTEQQLKAEGREYKAGSFPFMANGRARALG
DTTGFAKVIADAKTDEVLGVHIIGPMASELISEAVTIMEFRGAAEDIARICHAHPTLSEAVKEAALAVDKRTLNF
>SEQF2266_AEE66526.1 hypothetical protein BPTD_1120 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCNPPLCFGFSGCDMNVREYYEHALAERGYQPDEAQLQAVERLQRYYDEWVRFKALRSNALKKLLNRLDVPRGVYLWGGV
GRGKSFLMDAFYATVPVVRKTRLHFHEFMRGVHRELEEVKGTQDPLDEVARRLARRYRLICFDEFHVSDVADAMILYRLL
LKLFEHGTSFVMTSNYEPSTLYPDGLHRDRILPAIALIQGRMDVLNVDAGIDYRRRSLEQVQCYHTPLDAQARQALEHAF
AQLSDTAPQDPVLHIEHREIRAQALAGSVVWFDFATLCGGPRSQNDYLELANRFHAVILSDVPRMGPRQASEARRFTWLI
DVFYDHKVKLIMSAEVEPEQLYTEGALANEFHRTVSRILEMQSREYLEAERRLAVTL
>SEQF2266_AEE66527.1 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAANRTALVTGAARGIDLAIATRLALDGHPVIMLDASPDVQASARALAGRGLRAHGMRLDIADEQAVRDLPRRCGQWWE
NLAIVVNNAGISPKHEGRKRKVADMPLDEWRRVLDVNLTGTFLVTQTCLPALIAAGWGRIIMITSQAARTRTPVPGAHYS
ATKSGMTGLARVLAGEVAEHGITVNCVAPGRIQSAMTAEVGGAVNASHSATVPLGRLGLPEEVAATVAFLASDGAGYTTG
ATIDVNGGSFML
>SEQF2266_AEE66528.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELRHLRYFLMLAETLHFGRAASRLGIAQPPLSRQIRDLEEQVGATLFYRGTRGVSLTDAGVAFAQRAAQIVAAADEAVF
EAREAGQGRTGRIVIGFVHSLAYSLLPRVLPGFRQKHPGIAVSLREVTVADKESALLSGQIDTGIYRPTVRHPEIATLPI
FEEGFVLALPSGHPLARKRRVSVHSLRDQPLILFRALRGDVGLHGTIAAFLRAHDVPVKACEEVGTIHAGMGLVLAGVGV
CIIPETSRMVHIEGVVTRPFAEATTRVSSTVCWRHQDSSRSLDAWVRHVRELIRTGESAG
>SEQF2266_AEE66529.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66530.1 putattive exported protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTFITLRAQACLAALLALAGASGAMAAGYPAQPIRLIVPYAAGGTTDLIARLVGQHMGTKLGQPVIVENKAGAGGNIGTE
QVSRATPDGYTLLLGTAGNMTVNQAIYKDMAFDPNKDFQPISLIATLPNLMVVNKTVPAQTTKEFVAWAKENPKTVFFAS
SGVGSTTHLTGELFNMATGLHMEHVPYKGSGPALIDLVGGTGPVVMFDNMPSAIALVRDGSLRALAVTGPDRESSAKDIP
TVKESGYPDFDVVTWFGLFAPAGTPADVVQKLNKTVQEVVHSPQVSKRLSELGATPKTNSPQEYATIMKDDTAKWAKVVK
TANIVKP
>SEQF2266_AEE66531.1 short-chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRAQGYTLITGATRGIGRAIADLLAARGEPVMGIARSGDAGFPGPLLQADLLDAAQRREVLREAASHGVLRLVNNAGFN
QMQPLGEITDAATSAILELNIAVAIDAAQAVLPGMTEAGAGRIVNIASRSLLARPGGSVYSAAKAAMVGLTRSWALELAT
RGITVNCVAPGPVATEMFQRNNPPELARSRALVEAIPVARLGTPEEIAHAVDYFLAPHAAYTTGQTLFVCGGASISQIKL
>SEQF2266_AEE66532.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF2266_AEE66533.1 ECF family RNA polymerase sigma factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPASLITSPSARPAADTAAVEGLYRQHRSWLAGWLRRRLGCPHRAEDLTQDVFVRVIQGRKAVRMEQARALLATIAKGLV
IDHQRRAALEHAYLEYLAAQPSGHAPSPQQQAELLQALVELDRLLEGLPPHARAVFLMSQLEGLGYAEIAQRLRISLSSV
QQYMLRAMSACYMAFHE
>SEQF2266_AEE66534.1 putative signal transduction protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRPAAPDAVAQQAIAWWVRLQSGCAAAAEHEACRAWLARDKAHQRAWDRVATLAAGIRRAPAAPALAILPDLASRGPSR
RQALRLLAGLGVGAAAGAGAYSWAPWQRLVADASTGVGERRQIVPGPGVRLVLASDSAVRLRIDATRRAIALLRGEMLVD
VHSGAAQPALQVDTGYGMALAEQARFGVCRAGGSARIGVYAGSVQVASAPHAPWHRGEAGESLRLDGAGVPRRGRVAADE
SAWEDGLLVVHGWRLDRLAAQLARYRLGVIRVDPAVAGLRLSGVFPLDDAERALAAVRQSLPIEIRRHTAYWLSVTPRAA
>SEQF2266_AEE66535.1 putative ferric siderophore receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFSRSQKHPSWRLSPCVLAAALCAVAVGSADTARAQAPAASAQHYEIAAGPLADALTRFARRAGVVLSFDPALVQGRSTA
GLQGVYGVRDGFAALLAGSGLQARAGGGNNWSLAALPRGGDAQTLAPVTVLGLEGALAPTVGYVASASLSGTKTDTPLIE
TPQSISVVTRDQITEQGAQTLNQVLRYTAGVATETRGATATRLDQFSVRGFSAATYLDGMRVFGGRDALPQVDAYRLERV
DVLKGPASVLYGQGGPGGVVNQVSKRPLDEPLREIEVQAGNFDFRRVNMDFSGPVDEDRRFLYRVTGAAYMSDGQVDHTR
ERRYFVSPSFTWRPSADTTLTVLTNFQRDPDMGSYGSISAMRTLLSAPDGRRLGPNHYDGDADFEKSDRRSYSLGYQLEH
RFNDTFKASQNLRFQHAEGVYRSIYGASNNNYGYLDKDYRYSQRGLAISDVDVDAFTIDNNLQARFDTGALAHTVLVGFD
YQRVQTDTLSGYGSAPPLDVFDPDYHMGIERPPFTSDQTQYNYQTGLYLQDQIRLDRLSLLLGGRYDWSRTHTGTDNLAN
GSHSSSALAAEAFTGRVGAIYNFDNGVAPYASYSESFEPQTGTGWNNTPFKPTEGKQYEVGVKYQPPGSATLLTLAAFDI
RRKNLPTTDPDPTHMCGVSRCSIQAGEVRTRGIELEAKTEPLRGLSLIAAYSYLDNEYEKAYPNTTGLDLKGKKPVAVPA
HQASAWARYQLQEGPLAGLGMGAGVRYIGSSYANETNTLKVPSVTLVDMMLDYDLGRASPALKGMQVALNVSNLFDKEYI
GSCLSDSWCWYGYQRSIKASLRYRW
>SEQF2266_AEE66536.1 putative iron uptake protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAPAAGAHMLHYRFAVTSRALAAILGGYALSSAAAACLAVWLPMRRVDAVVAALMLSFVVYTCAVLWVFATRNAWRAWA
GVLLPALALLMLYWLGKAAGGA
>SEQF2266_AEE66537.1 putative iron uptake protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNATAFCLAYAGFAALSLGMDRHYEDVFDRALPRRRRLALRSLEWLGLALSLWASAGAWGWNYGTVEWIGILSLAGLLL
IWLLTFWPRAALGAGGACALAAPVLALL
>SEQF2266_AEE66538.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66539.1 tryptophanyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTRVLTGITTTGTPHLGNYAGAIRPAIQASTQPGVDAFFFLADYHALIKCDDPARVARSRLELAATWLAAGLDPERVTF
YRQSDIPEITELCWLLTCVTPKGLMNRAHAYKASVDQNAAKGVEPDDGVTMGLFSYPVLMAADILLFNANQVPVGRDQVQ
HLEMARDIAQRFNHLYGREFFVLPEVVIAEEVATLPGLDGRKMSKSYNNTIPLFEGGAAGLRNATQRIVTDSRLPGEPKD
AEASHLYMLYRAFSTQQESMAFRRQLEEGMGWGDAKQALYERLERDLAPMRERYVELISNPGLIEDILQVGAAKARKLAQ
PLVRTLRDAVGLGVLQPAAAKAAQPARKAAKDARFVSFRDEDGSFRFRLLAADGEELLCSVPFANPKEAGALMRRLQDEA
PEQALRGHDDVSYAAWLDGKEVAYGPQAADAGARDALLAKAREALAQLAAA
>SEQF2266_AEE66540.1 transcription accessory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPETSATTNAAPGVDHARIIAQLATEIGARASQVASAVELLDDGATVPFIARYRKEATGGLDDGALRTLEVRLGYLRELE
ERRGAILESITQQGKLTPELQQEIATAETKQRLEDLYAPYKPKRRTRAQIAREAGLEPLADAILADPACDPAALAAQYLN
PEASINDAKAALDGARDILAERHAENADLLADIREHLWSTGLLYSKMVEGKETDGANFRDWFDFNEPLRTLPSHRILALM
RGRQQGVLELRVGLEADLEAETPHPCVVRIASFLKLGNGLFALDATPRARWLGEVCRWTWRVKLLTAFESELFGRLRESA
EAEAIRVFAANLKDLLLAAPAGPKTVLGLDPGIRTGCKVAVIDRTGKVVDTATVYPFEPRRDREGTIKTLAALAARHKVE
LIAIGNGTASRESEKLVGDMMARFPDLALTRVVVSEAGASVYSASETAALEFPDLDVTLRGAVSIARRLQDPLAELVKID
PKAIGVGQYQHDVNQRELARSLDAVVEDCVNAVGVDVNTASAALLARVSGLNTLLAKNIVAWRDENGAFPTRDMLRKVPR
FGEKAFEQAAGFLRIPNGDNPLDASAVHPEAYPVVERIVARIKADVRHIIGQREALKGVSPSDFTDERFGLPTVRDIFAE
LEKPGRDPRPEFKTAQFKEGVETLNDLFPGMVLEGVVTNVANFGAFVDIGVHQDGLVHISALAEKFVKDPRDVVRVGQTV
TVKVLEVDVARKRVALTMRLNDAAEPARRGNGAGAGAARGADRGARRPQADNGKGAPANSAMADAFAKLKR
>SEQF2266_AEE66541.1 ATP-dependent helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDLDISEFFADDGPLARAMPGYRPRQSQVELAQAIDSAIAARATLVAEAGTGIGKTWAYLVPAFAQGGKVLISTGTRTL
QDQLFARDLPKVRQALAAPVTAALLKGRGNYVCHYHLDRLQGDDRALKSRAEIGQLRQIQVFAGISKTGDRAELAQVPED
ADIWQRVTSTRENCLGQECPRIRDCFVVKARRQAQEADVVVVNHALFMADLVLREEGVTDLLPEVDTVIFDEAHQLPDTA
TRFLGSSVSTHQLLDFARTLEAAGLAYAREAAKWSDVGRQVETAARELRLACAPLERLPGRKATFEAMPDPDEFDAALAS
LREVLDAAVRALSGVAEKHPDLAAAARAGAEISVRLSRWATPPRHAAQAAEHDEGWGRDDQGVAVAAPSEALLAEAAAAA
NWSGPAVRWVEHGQHHVRLHAAPLSVAQAFSRYRKPGQAWILTSATLSVYGDFGHFTRQLGLEDARTGRWESPFDYPAQG
LLFVPRDMPEPQSPRFVERFVENLLPLLEASPGGALVLCTTLRAVDKVAQLLTDAFADAGHDWPLLRQGEATRRDLLERF
CKLEHPVLVGSASFWEGIDLPGDVLTLVAIDKLPFAPPDDPVIEARLRACRLRGGNPFAEYQLPEAAISLKQGAGRLIRT
ETDWGVLMVGDARLVEKPYGKRLWRGLPPFARTRDMNEALAFYARMGEAEP
>SEQF2266_AEE66542.1 competence lipoprotein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALRAAIALSTILIVAGCGSSSTKYDKTAGWSAEQLYADAKQEVAAGNWTDARERLTAIESRYPFGTYAQQALIELAYVN
WKDGENEQALAAIDRFQQLYPNHPGTDYVLYLKGLVNFTPASAFMSNLTGQDPAERDPKGLRASYDAFNELVQRFPNSKY
TPDAQKRMTWLVNAIAMNEVHVARYYYERGAYVAAANRAQTVITDFEGAPASEEALYIMVESYDKLGMTELKGDAERVLD
QNYPNSKFKTQGLSADKSWWNPFSWR
>SEQF2266_AEE66543.1 ribosomal large subunit pseudouridine synthase D [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDTAASVDLLSDDEPLLLTVPPDTPADRLDKVLAGLLPGHSRSRLQGWIEAGYVLVNGAQAKVRQAVGPGDVLSVWEQP
APESRAFAPEPVAFDVVAESPDWIVVDKPAGLVTHPGAGNWSGTLLNGLLHRYPELARVARAGIVHRLDKDTSGLMVVAR
NERAQTHLVRQLQARTMGRQYIALAHGWLGAAGTVDRPIGRDARVPVRMSVERPIAPKPAVTHFDPRRRGCAEGGARVSE
VLCRLETGRTHQIRVHLASLGHPLLADTLYGGKPLAGATRQMLHARALHFDDPGGAGEVSFEAGVPADMSDVQEALAWNA
>SEQF2266_AEE66544.1 hypothetical protein BPTD_1140 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNYFCTTRAGGAGVAPHDTLNLGLRAGDRPETVAENRRRVRAAVPAEPLWLRQVHGHEVVDADAGPPHEPAADASVTAAP
GRVLAIMVADCLPVVIADQDGTVLGAAHAGWRGLAGGVLENTLRAMQAKVPDARGWRAWIGPGIGPAAFEVGADVLQAFA
ADGPEAAALFAPRPGLPGKWLADLPGLALLRLRRAGVQAQSCGLCTVQDSRFFSYRRDRETGRMALLAWLDAR
>SEQF2266_AEE66545.1 poly-beta-hydroxybutyrate polymerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAHLSAAWPVPVSVAPDALAEIQADFSREWLRLCDEAKRGVLGAPADKRFAGAAWLDDRQRLLMAHAYLLSARAMARLV
EAAQVSEPMRNRLRFSVMQWVDAMSPANFLAFNPDAQRAIVESAGRTLQEGMANLLNDIQRGRISQTDETQFEIGRNVAT
TPGHVVFENSLMQLIQYAPQTAKVCERPLVIVPPNINKYYILDLQPENSFVRYAVEQGHTVFIISWRNPLAADTDGVDTA
TWSEYLDDAVLKALAVASDISGQPQVNALGFCVGGTMLASALALAQVRGERPVASLTLLTSLLDFHDTGILKVFVDEAHA
LLRDHQYGQRGLMPARDLATTFSFLRPNELVWNYVVSNYLKGKTPPAFDLLFWNADSTNLPGPFFAWYFRNTYLENNLKV
PGRARVAGVPLDLTRLDMPTYLYGSREDHIVPWPSAYASTQLLRGPMRFVLGASGHIAGVINPPAKQRRSYWVNESAGAV
SHDLPGDPNAWLAGAVEHAGSWWPDWTSWLAGHGGKQVAAPAQAGNKRFRPIEPAPGRYVKVRAV
>SEQF2266_AEE66546.1 3-ketoacyl-(acyl-carrier-protein) reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGKLAYVTGGMGGIGTAICQRLAKDGFRVVAGCGPSRNYQQWLDEQAAQGYTFYASVGNVSDWESTVKAFERVTADLGQ
VDVLVNNAGITRDGLFRKMSVDDWRAVIDTNLNSLFNVTKQVLDGMVERQWGRIVNISSVNGQKGQFGQTNYSTAKAGIH
GFTMALAQEVASKGITVNTISPGYIGTDMVRAIRPDVLEKIVATIPVRRLGTPEEIASMTSWLASDESGFATGADFSLNG
GLHMG
>SEQF2266_AEE66547.1 hypothetical protein BPTD_1143 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQAQTGAALRLIKKYPNRRLYDTQTSTYITLADVKQLVLANENFQVVDAKSGEDLTRSILLQIILEEESGGMPMFSSNM
LAQIIRFYGHAMQGIMGSYLEKNIQAFMEIQQRMAEQSKGLYGSQFGPEAWTQFMNVQTPMLQKMMNNYIDQSKNLFVQM
QDQMQDQTRAMFSNFPFTPPGGDGPQGGRGK
>SEQF2266_AEE66548.1 hypothetical protein BPTD_1144 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKKALLLALALSLPGAAFAAEYPIGKPAEKGGMEIGAVYLQPIEMDPPGMMRAAKDSDVHLEADIHATAGNATGFPEGE
WVPYLVVKYEVQKVGSDKVQKGTFMPMVANDGPHYGDNVKLDGPGKYKLKYTIMPPTADKMNHFGRHIDKETGVGPWFEP
FDLEYEFVFAGTGKKGGY
>SEQF2266_AEE66549.1 hypothetical protein BPTD_1145 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAPAAALLAMALGLGAPLAARAADLPTFTLTFQPDGTFEPARLEVPAGRFKIELINASNEPVEFESIPLRKEKVLGPGV
KSFVVITISRPGEYPFFDDFHQDVKGTLVVKPKD
>SEQF2266_AEE66550.1 hypothetical protein BPTD_1146 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEQVLFIVWRESVEALLVVGILYAWLRATPAGRRGMPYLWGGVAAGLALALLLALVLLGVSSWLSDEGQEWFQAGMSLVA
CALVVQMVIWMKRHGRTLKRELEGGARASIERDNWWGLLVLVMIAVAREGSETVVFLYGTVAAAAGQAGDAALLVLAGAA
GFLIALLTFWLLQLGGKLITWRRFFRVTEILLLLLAGALLVGGLDHLISLDVLPTLIDPVWDSSWLLDDSSGMGKVLADF
AGYRAYPALISVLLWLAYWLVVWLLLRRADGAAAISARSAA
>SEQF2266_AEE66551.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASVLGRATARFADVLRDHAPLLRKLQWGIVAAYAFLLIVPVFLPLPDNAASVFDNLTVLAQFAFWGVWWPFVLVSMPLL
GRAWCGWFCPEGMLTEWASERGQGRAIPRWMRWGGWPFVAFALTTIYGQLVSVYQYPLAALAVLGGSTVAAMIVGWRYGR
SKRVWCKYLCPVNGVFNLLAKLAPWHFKVDEEKWRHPVIRVEAINCAPLVPLRHMKGAGDCHVCGRCSGYRGAIALAPRS
PETEIVEVADGDGWQTALICFGLMGVAVGAFLWSASPWYVTIKQWAAAWLVEHDIIWPLLDNAPWFVLTHYPDVNDSFSW
LDGAGILLFVAGATLAVGLPAFAALWLADRVAPLAARAGRLAGVHKLAQGLIPCAGIGVFLGLSATTLTLLRHEGVGTGW
ANPVRFTLLALAVLWSLRLVWRLLARRPAGLARRGLAWLAAAAGLAPFCLSWVLFFAIW
>SEQF2266_AEE66552.1 hypothetical protein BPTD_1148 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSYAFRLLNVFAESCFGGNPLCVFEDARGLRDEEMQALALQFNLSETTFILPGGEGADAQVRVFTPDAEMRFAGHPALG
TARVVSELLGLGASVRLGFKAGVVPVREHDGAWTFTAPSSGMPRTARAALAAGEIAGLLGLDPADLHDEPLWVDTGSDQL
LVPLKTPEAVMRAAPHAAWPARWPANSLGRKTAYVFAFGPQTGAGARRIVQSRYFHARAGGGVAEDPGTGSACANLGGWL
LARGAPLPAHILVEQGDLVRRPCRLRLDVDDAGAIQVGGGVIEIGRGEIRLPR
>SEQF2266_AEE66553.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66554.1 putative dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFSHVTVGVSDLARAGRFYDALLQPLGLRQRQTQPDGGPPSLCWVRAGTSLPRFFAYMPFNGRPPSPGNGAMVAFLAETS
EQVDQAHAAGLAAGGSDEGAPGPRARYGPGYYGAYLRDPDGNKLHVVHRSGPAAAG
>SEQF2266_AEE66555.1 putative 2-pyrone-4,6-dicarboxylic acid hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVERARLAEGGGWDCHFHVFDASRYTLAAGSAYQPEDASLAAFRGVCRARGIGRAVLVHPSVYGADHSSYEDALAANGDW
LRGVAVVYPDEATTPDARIEHWDLLGTAGTRINRLFPGAPQHPERIVERVKPFGWHVQVLTDIVEDIGLVRRIAARDVPV
VVDHFGHHPHAQLLRSAGWQDLIALVREGAAWVKLSAPYRVGAQGPAWPGAQALVDQLVQANPRQLVWGSDWPHPPDHRH
PFPAPDQAAIGATIAQWLPDAQLRRQVMELNPLRLYGGTRAAGR
>SEQF2266_AEE66556.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKLRAACALAAALACGAVLAQDLGGKPLTLVVPFAPGGNADIVARSYAVPMARLIGATVVVDNRGGGGGAIGTAIVAKA
PADGSTLLSATPGQLGTLPHMFKTGYKSADFVPVGVVSKTSIALVVKHDDARFKTTEEFIAYARRNPGKLNVGHAGPGSP
NHLAMLQFENATGTRFTPIAYKGSGPALIDLLSGQIDVIFDQVSSSLPHLKAGKLSALLILGPTRDPSIGQVRTLKEAGL
PEFDASTYIGVLAPKGVPAETVAKLTSVIRQVADDPAFDSKLREIGSGAFYADPADFARILQADEDLAKAMIQQGRLIDG
>SEQF2266_AEE66557.1 putative racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAIIKSIEVCVARVPMDKVTYLSNRTVVDRHYGLVKVRSADGVEGIGFCYVGNQAGEIFRVAVEQLLGPVLIGRDSLAVE
GLWREMYQEALLQGRMGMVMRALSALDIALWDLNARAANLPLHKYLGAVELDSVAAYASGGYYVEGKTAGQLGEEMASYV
ELGFKAVKMKTGRWSPQGEESRVRAAREAIGEDVELMLDCNNGWVDTVQAMEYLRRMEPYNPYFIEEPFSPDDVESHARL
ARLTRIPVATAEIGYGRWYHKQLLDMGAAAILQTDAAVCGGITEWKRIAAMAAGYGIQMCPHWFHDVHAPLAAATPNARY
VEFFWDDQVLNFRRLVDRQLEHKDGRVILHQTPGLGFGFDENAVARYGRWTTVS
>SEQF2266_AEE66558.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFLHSFVTVAESGSIADAARRLGLAPTTVAQQIRALEADLGSRLLTRAGRTVRPTVAGARIVDRARELLRGERDLRSAA
SDTGLPAGPMRLGATPTALMGLVPPLLRRWMRAHPDIQIYIEPGTSSVLLERVMAGQLDAAILVHPNFELHKTCAWSLIR
EERLVLLAPSALRVGNALRVAAREPFIQYDRKVVAGKMADEYLRAHGVRPKVQFELDGIEHISALVAEGFGVSVLPDWPT
LGPADARVRRWPLPDPCPSRQVGMVWLRSSVRSPLAQAFHAYLGAAAGAP
>SEQF2266_AEE66559.1 short-chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQVATQSSLAGRTALVTGASRGIGRAIALALGRRGATVAVHYNAAREQADEVVQAIGAAGGRAWALRADLAHPDGAGAL
ARDLRASLREQTGDEGLDILVNNAGVSLRARLPEVSPQDFDRIIQVNLKTPFFLIQHLLPLLRDAGRIVNVSSMGTRAAY
PEMSVYAPAKAGLEALTLLLASDLGARGITVNAVLPGATATDMNTRARDPAMADALARDIALGRVGQPEDIADIVAFLAS
DQARWITGQRLDATGGQRL
>SEQF2266_AEE66560.1 hypothetical protein BPTD_1156 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPSRHLPPITALLSFRLNQLAQAGAGLPHPTRAIAVAAILINVFMATLESAIANTALPAIAADLGVSEASSIWVISAYH
LAMVAALLPIASLGEIIGHRRISMAGLVLFTLASLACGLAPSLPWLIAGRLAQGVGAAGILGVALAMTRFVYPREQLGRG
LGLNALVVSLSLAAGPTAASLILSLGSWHWLFLINVPLGLLGLALGVCALPPTPRSARRYDAVAGLLCALFLALLVYTLN
AYAHDVGAGGNTAYALATLAMLALLLRRQSGRGAPMLATDLLRRPIFALSAAATLGAFAAQTLAFVALPFMLQSLLGYTQ
VQTGFLITPWPALSDRHPPGLLGGIGMAVLAAGLLSLVALPAAPDAFDLGWRMALCGAGFGFFQAPNMRAMLADAPPERS
GGASGMTSSSIMLGQSLGAALVAGLFTLRGAAAAPAALWLGAAFAVIAGIASLLRLRHAAAAGAGARLDLTRV
>SEQF2266_AEE66561.1 sodium/solute symporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQESEFFQLSGTTAVLLLVAFYGATFLMSLMIGQKKENVDGYMVSNSSVGFGLSAASMIATWIWAASFYASATSGFKYGL
SGPIQYGFWGALMILFIYPFGKRFRQLAPKAHTLAEVIHARHGASSQMIMAVSNIVGSCISLMVNFTAAGALVSVLSPLS
FIQGVLIAGLGVLSYTLWSGFRASVMTDFAQLVAMILAAVIIIPLIFFNAGGPDMLQANMWRLSSEQADFFSTTAILEQG
APYFVAVLAYAIGNQTIAQRLFAVREDLIKPTFLTATIGYGAVVIGLDMLGLLALFVGLEPVNGNMNNIIPQMASTYLPP
VGIALFFILVVGSLSSTADSDLAALSAIVITDIYAKNLAGGRPDPRRMLWWGRATMIVATMVGVIFASLRLDILVMLVFV
GALWGAIVFPVIASFYWDRVSNSAFFWSVISAVVLFTIVRFELVPIEGAVAVFYEICAAIGGGVVIGLMSFAFFGRVTAL
TLGTLATLILLPCFVGTLREYIVLLGSLTAYGVSTVVCVALSLRNQERFDFSLLAERVTSFHYEKARMMGAKPAAPAAQP
QPARG
>SEQF2266_AEE66562.1 hypothetical protein BPTD_1158 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLTLYFLAWPVVSAAVLLVLIVTLWRDIRDARATGKSMI
>SEQF2266_AEE66563.1 putative muramoyltetrapeptide carboxypeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPALRAGARITIVAPASAIAGAADEAAEWLLERGYEPQVMPAARARLAPPFDYLAGDDAARLADLHAAFADPAVGAVWCL
QGGFGSWRVLDQIDYGLLRRHAKPFIGYSDVTALHLAIQRYAGFVTFHGPMLAQDLLAGRQAPTEQALLDMVSGRLGAGS
WIAAPPQARLATLASGVATGRLIGGNLALLAALTGTRYAIDARDGILFFEDVNEALPRVDRMLAQLRRAGAFDGVRGVLV
GSFTRLLGVPGDGEAAQAALYPLVREHFQARGIPVLAGWPSGHGDPNLTLPLGARVTLDAGRGALRLEQPVAV
>SEQF2266_AEE66564.1 hypothetical protein BPTD_1160 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPSAPTDSARSLYQDTAVAALRDDLALALCAAAHHGLGEGVCNHFSVALPGQAGAFLLNPRGLMWSEVRAEDIVLVDAA
GNKLAGRHEVEPTAMFIHAAIHQVAGKACVLHTHMPYATALTLTEARMLDTTLSQNAMRFHGRVAADRRYNGLALDAAEG
ERIARAMDGADIAFLGNHGVVVCGERIDYAFDDLYYLERACCAQVLAESSGRPLVPLDAALAASVAGQARSERLQSTLFF
EALRRALG
>SEQF2266_AEE66565.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFKLRQMEAFRAVMLTGSMNGVARLLFVSQPAVSRLIAHAEQSLGLRLFERDKGKLTPTAEAQRLFEEVGQLFDEALRI
DELARDLAERPEGELKLCSSPSLALNFLPPVIARYVNEHPRVRLKYHTTLLSDMAHELLGRKVELAVSVLPIDNPNLVVE
PFATGHMVCILPQGHALARQDSVGLAELARNRLVLYSRNIPFGQLVAAAFQRANVPWRATVDIVRAELACALVRSGVGVA
IVDEFSVAGGGWPGIEVRPLREPIPLALSLVRSRFERPGRQAQRFVKLLKEQAQRRAAAVQ
>SEQF2266_AEE66566.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMQTLGFVGLGMMGLPMLENLAGDERWQILAYDRSPAPFERLAGHPAWGKRLRAAAGLQELAACDTVITMLPNSAITNAV
VLGGDGQPGLIDLLESGAAIVDMGSSNPADTRRLSEQLAARGLTLIDAPVSGAVAKASTGTLAIMAGAAEADLRRVRPIL
ERMGAAIIHTGAVGSAHAMKALNNYVYAAGLLAVSEAMVIARRMELDLEVFTDVLNASSGRNVASETKLRQFIIPGTYNG
GFALALMAKDLGTAQSLQALTGVQADQLALCAELWRQALAQLPGGADNTEIHRFLAQRTPATEPA
>SEQF2266_AEE66567.1 hypothetical protein BPTD_1163 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFKPLFATAALALAIGQATAAYPERPIRMVVPFPPGSITDVVARSLGQGMAAELGQPVVVENKPGANGIIGTQDVVKAQP
DGYTLVVVGVSTAASGVSLFKNLPYDPARDLTPIGAVAETPYLLVGGQDVAGKTVADLYDYGRQHPGKLTYAYGSGSAQV
FGAKLAAMGDITVTPVPYRGGPQALTDVIGGTVDLTFTDLANGLQQARAGKVKVYGVSTPGRFALTPDIPTLNESGAPGF
DLTVWFGLMGPAGLPPAVTERLAGALDKALAAPELTQTYARQGLSVKTQGPAAFGAFVRSEIDKWAGIVKETGIAPQ
>SEQF2266_AEE66568.1 hypothetical protein BPTD_1164 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLIEIRKRTLIVETTYHENGPAPAQPLKLAASCAVIRNPYAGRYEPDLMPFMAELRSLGTLLATELVDTLGKDNIEVYS
KAAIVGVDGEMEHGAVWHEAGGWAMRSVLGEPKAMVPAVKAVATAGYRMMVPVHYIHASYVRSHFNSIEIGIQDAPRPRE
ILFALVMGTGARVHARLGGLTKEAVSVHDGQR
>SEQF2266_AEE66569.1 hypothetical protein BPTD_1166 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRRARRPGSGRRFFGHGGYDPRHGDLIRLPLHFYKFPAAELPGARPGPTLYRLASEHAMEIAALTWSTPLARLAPVPPR
TPAAPPSHDWPHAAPSVRPHGAAGPAAAPVDLLRDLHAQARMARAVAAYQAEQAARQTAARSPCAAQDLGDIDCLMVLQA
YRVAMPNAPVQDLQGMPPAAQRGSPAVGPIARTGPADQQIRR
>SEQF2266_AEE66570.1 hypothetical protein BPTD_1167 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKSIVLTLATQAGLAQAQYVGPSSNQQMSVKELLDTARDDAVVTLRGKLVKQLSDDTYLLDDGTGRVQVEIDRHLFPPN
QPVDANTLVEVSGEFDKEVIGTSEVEAKALRILGAAK
>SEQF2266_AEE66571.1 putative succinylglutamate desuccinylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTPTPVFTDYLRAHQFLGMQPGPRLLVLGAVHGNEVCGTRAIERILAELESGALAITRGQLTLLPVTNPLAYRKGERQG
DRNLNRNLRVCATPTDYEDRIGNALCPLLQAHDVLLDLHSFHTGGQPFAMLGPRDNQEALEPFAHAREEARLVAHLGPRR
VVEGWMQAYERGVRRRREQNPGAPAALLDAAYGVGSTEYFRAHGGYGVTLECGQHDDPAAPEVAYRAIRQTLALLGLADI
ALEPPRRDFETLCLVDVVDREADGDAFARPWASFDPVRQGELVGTRADGRQVLAPRDGYVVFPNPRALAGNEWFYFAVAS
DRLGEDAGN
>SEQF2266_AEE66572.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66573.1 hypothetical protein BPTD_1170 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPFNQTVWAARGSTALFVLLWSSGAIFAKWGLDYASPFAFLVLRFALALAVLTALGLRAGRCLPAPGTRLRTAATGALLL
GGYSICYLLALQHGVTPGVLATVLGVQPLLTLLWLERDLPARRLAGLTLALAGLVLVVWRNIDVARLNHAGMAYALAALG
CMTAGALLQKGSRQAPGEVLPLQYATSLALCLALAPGQPWQVQWSPGFVAAWLWLALVISVAATLLLYRLIQGGNLVNVT
SLFYLVPPGTALLDYLLLGNRPAPASLAGMAAIVAGLGLVFGRRRAH
>SEQF2266_AEE66574.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYTLKQLEAFYWSAVLGSFSASSRKLHTTQSAVAKRVGELEGFAGTPLFERRAKSLVLTQPGRKLFEGAREMLELNSRMV
LDMADPSRFEGSVRLGVTELVALTSLAGVIERLNQRYPKIQLVPEIEAGITMYQQLERDELDLAIMPGPFWSYEYDCVQL
GSVTNVWMASPALALDAARALTPHDLAPFPVISQPQNSALSHLYDAWFAQQGLSVKRVLTCNSLAMMAQLTMLGLGISHL
PSAYFDPLVARGALCRLRVQPDLPTIHYYAVYKKSLINPVVSTVIDIARETCNFEVEGAFLPLPPGGLRSG
>SEQF2266_AEE66575.1 amino acids ABC transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIKLEGVNKWYGEHHVLKDVSLEVGRGEVLVVCDPSGSGKSTLIRTINRLEPIGKGVIRIDGQDIHAKGVNINTLRRGIG
FVFQQFNLFPHMSVLDNVTYAPLHILKTPRREAEALAHQLLERVGMAHKAQAYPGALSGGQQQRVAIARALALKPPIMLF
DEPTSALDPEMVGEVLQVIKSLARDGMTMVCVTHEMGFAREVSDRVIFMDAGEILEIATPQRFFSAPEHPRAQRFLADII
GHHPA
>SEQF2266_AEE66576.1 amino acids ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDILHDYWPMLLVGQYPNGPLGGLALTLILALLGLLLSMPLALLIAIARVSPFRGLRVASRLLVNTVRGMPLLMLIFWA
YFAVPKLTGGSISGFWTLVTALVIYESAYLSEVIRSGIEAIPKGQIEASRSLGVGYWTTMRKVVLPQALFNVLPSMTSQF
VSTIKETSLGYVISVNELTFAANQVNNLVLTQPLQVFGILAIIYFLVCFSLSRSVAWLDSWVRRSRSMA
>SEQF2266_AEE66577.1 amino acids ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFFLDAHYLSQLADGMMTTVQLFLVAWVLAFTLAVLLVVIRTTNLAPCRWFVDAYVEYHRNVPLLVQVLFWYFGMPELLP
EGVRGWLYQHNAELSLAAIALGLGSAAYIAEDIRSGLRAIPGTQFEAARALGSSYLQCMRHVIVPQALRISIPPLVGRAL
LLFKNTSVAMAIGVVELTYQAREIENETYRTFATFGAATLMYLLGSFLLMFIGSRVYARYNIGSGGRRA
>SEQF2266_AEE66578.1 solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLCGTLGTSQPFSYQDAATRTVVGYDVDMCKLVADKLGVKVNYKLLSVAARVPELNESRVDILAANLGYSPERAEQIAFS
HTYYVSPQKLLVRKDSNLQTIESVNGRRVAATKGSSSEREIKRILDKSQVLGFTDSSASYLALQQKKVDAQFASELVLVR
LMLQSPPTAPVSIIDKAVFDEPWGLGMRKSETRFIAKVNEILDQAEASGEAQRLFEKWFGAQTPYKLQRSFKIGPIAG
>SEQF2266_AEE66579.1 aspartate aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIVADKIKRIKLSPSVATRAIVAQLREEGRRVIDLTVGEPDFSTPAHICEAAIAAMQRGETKYPPAQGTMPLRKAVRAR
LREETGVDYPEGRIIVGTGAKQVLYNGLAATLNEGDEVIIPAPYWVSYPDMVLVNGGVPVAVTATPATQYKLTPQALEAA
ITPRTKWLMMNAPSNPTGAIYTADEWRGLAEVLRRHPHVWLMTDDIYARLNFTATPTVHPLQVAPELAERTLVVNGVSKA
YAMTGWRIGYGAGPEALIKAIAILQSQSTSGACSISQAAAREALAGPQDCVAEFARTFKARRDAAVAALQGAPGLSVVMP
EGAFYVFPDCAGVLGKTTPDGRVLETDTDFVHYLLREAGVAVIDGTPYGVPGTFRLSFAAALEDIQQGCAAIRAACERLA
>SEQF2266_AEE66580.1 hypothetical protein BPTD_1177 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSIGFRILPLPEPPAADEVLAGFAQIGTAQISDCMGRLYGVQGLRPLHAGAARIVGRAITVKTRPGDNLMIHKAISLAG
PGDVIVVDGAGETANALVGELMMMDAQSRGVAAFVIDGAVRDLDVFQQGAFGCFARAVSHKGPYKDGPGEINVPVSIGGQ
VVAAGDVIVGDADGVVAIPLAQAGAVLAAARRKEDAELAAKEKLRAGTYAKPWVDRIIAEKTGDAQ
>SEQF2266_AEE66581.1 hypothetical protein BPTD_1178 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLTKNFVKAKNPCTAGYRWFLRDHNGHGEYQPVLDALVEAGRIDDAMWLIDQFGPTDQVLNLDTLDAPALVFAGTVTVR
RGITVDGVLRAGRNIVCGAGIRAGTLVQAGEGIDARGSIVCDGDVQAGGDIQTTWGVQVGKRLTVGGQLRAGWDIRTGGD
LNVAGPIRAGDAVVSGGILKCEQGIRAGQDVQAEYDINVVSGIQAGGSILAGGHVETGWGMIAGHDIVADGAIRSGEGLE
AGGRIEAGEGHGVYAGLRVRVDAWPDSARVAAARCFGPLLSGHWIGAAALDAQA
>SEQF2266_AEE66582.1 hypothetical protein BPTD_1179 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAYPRVMQRLPDQAVAGDPRPQPPEPPEPSDCCQSGCIPCVYDLYDEARERYQEALRAWRARHPEAAGGGDA
>SEQF2266_AEE66583.1 lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTLLPVLALAALLSACNANAPSDTPEGAPPPDTHTSRNSLDWQGTYQGVLPCADCPGIRTVLTLRADNTYQLQTQYLER
QPRPDTVQGRFGWLTGDNAIELDSAGDHYRYQVGENRLTMMSQDGTLPSGPLAEHYVLKRSQ
>SEQF2266_AEE66584.1 hypothetical protein BPTD_1181 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPRMNPYTVAPRTMQALMALQSYVNDCGLEHSLLELVKMRASQINGCAFCLNLHYTEARRQGESELRLQLLNAWRESPL
YTARERAALAWTEALTLLAQTRAPDADYAELATHFDELERVNLTMAINTINAWNRIAVGFRSLHPVNE
>SEQF2266_AEE66585.1 RNA polymerase sigma factor SigJ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKTAAITIDTPGADDFEPHRRHLYGLAYRMLGSWSEAEDIVQETWLRWREIDPATLDNARAFLSRIATRLCLDVLKSAR
VRRQVYVGPWLPEPLPDAQAYAGAAPGEIAHDVSVALMLALERLSASERAAFLLHDVFDVPFAEIAGTLGRTEAGCRQLA
ARARNRVRESRPRFAVEESEGIRLARAFIDAAQHGDVDILRQLLADDAVLHSDGGGKKLAFMRPIQGRANIVRAFAGLAR
KGQSDLSSVRIVQLNGMPAIYGIERDGLPRTISLGVCGGRIVRVYIMRNPDKLAHLARFTG
>SEQF2266_AEE66586.1 hypothetical protein BPTD_1183 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTTHRILAAGLLAALCAAASAAQAQAVQQQYQYPSAPSKDGSQSPPSTLRITETPGAAAVPIRDTPESVREYQRCRDVS
DRAAVSNEQMRAGVAQCLKELEARRQAG
>SEQF2266_AEE66587.1 hypothetical protein BPTD_1184 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPQLLALLVEREMPYGKYKGRLMADLPGHYLAWFARNGFPAGEIGRLLALMHELDHNGLRDLLKPLRGGRA
>SEQF2266_AEE66588.1 hypothetical protein BPTD_1185 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAARMPANAMSADPSDSSHLVETLVSSETLCDGGFLKARRDTVRLPSGRNATREYIVHPGAVVVVPLLDDGRVLLERQF
RYPIGQVMTEFPAGKLDPGEDPLACARRELLEETGYTAGQWASAGALHLAIAYSTEIIHIFFARQLRAGTRQLDEDEFLD
VHSATVPELLQACREGRVTDAKTLTCVLWLQNVLAGDWPLDWQPA
>SEQF2266_AEE66589.1 ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPAGHEVEVRPQGWRFDARPGESLLRAAARAGIRLPSSCRNGTCRTCLCRLVAGEVAYLVEWPGVSADEKAQGWILPCV
AQALAPVAIEAPQATPLPPKPPPSTLLTGARRA
>SEQF2266_AEE66590.1 hypothetical protein BPTD_1187 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGTPRAPMVSGLFRIGALLAAGLLCGGAWAQDAEADPYGDPIVAPRAAPPQWKPLKIDPPGHRYAFPLYSSKNLERDDL
RGIRRLVIVLHGVKRNAASIHGTVTALFAANPERAEDTLVIAPKFASAIDAGFAAMPAWRRASWEDGELSMQARGRPAPV
SSLQVLDDLLHELSDSSRLPALRTIVLAGHSGGAQLVQRYAVLNSLDETLRREGLTLQYVVANPSSYLYLSPERPRADGK
GHAPYERGICPTYNQYKYGLDHLPAYARGLDPASLPARYAQRHVTYLLGSADNNPEHQLLDKSCGAEAQGATRLARGLGY
WRYEAGVLAPRLPRSVAWHHDAQEVVDAGHDAAQMFSSSCGARALLGDRSAPLPDGPACLPARR
>SEQF2266_AEE66591.1 transcriptional regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRRVPLSPDAAHCSSCMLGHVCVPVGMPANEVEKLDELVKERVRVERGKTLYELDDPLDAVYGVRFGSLKTQLEDSSGQ
LQITGFHLPGEIVGLDGMIESKHVSSAVALEDSEVCVIRLPEIDRVSTQLPSLQQQFRRLMSREITRSHQMLATVGAMRS
EQRLAAFLLNLSQRYAALGYSSTEFVLRMSREEIGNYLGLTLETVSRLFSRFGREGLIRINQREVRLIDLPGLKQLIGQE
SC
>SEQF2266_AEE66592.1 ATP-dependent protease, ATPase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFDKLTTKFQQALADAQSLAARNDHPYIEPVHVLAALLGDPDSGAASLLARAGVAVNRVQPAIDSALKGLPQVQGDDNV
QVGRELQSVLVRTDKEAARRGDTYIASELFLLALADDKGDAGRILREAGLQKKALEAAIDAVRGGENVSGAEGESNREAL
SKYTLDLTERARQGKLDPVIGRDDEIRRTIQILQRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNDEVPETLRGKRVLSLD
LAALLAGAKFRGEFEERLKAVLKELAQDDGQNIVFIDELHTMAGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK
YIEKDAALERRFQKVLVGEPDVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHRYITDRFLPDKAIDLIDEAGARI
RMEIDSKPEVMDRLDRRIIQLKIEREAVKKETDDASMRRLAVIEEELEKLQREYNDYEEIWKAEKAAVQGTQAIKEEIDR
VRAEMAELQRKGQFDKLAELQYGKLPELEARLKAADSAEREAGESDSGKPRLLRTQVGAEEIAEVVSRATGIPVAKMMQG
ERDKLLRMEDFLHKRVVGQDEAVRLVSDAIRRSRAGLADPSRPYGSFLFLGPTGVGKTELTRALADFLFDSEEHMIRIDM
SEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVILLDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVI
VMTSNLGSQHIQSMAGKPYEVIKEVVWDELKHTFRPEFLNRIDEVVVFHGLEAQHIESIARIQLKRLGERLEKQEMRLDV
SDAALAEIARSGFDPVFGARPLKRAIQQQIENPVAKLILEGVFGPRDVVPVDWQDGKFVFTRTLQ
>SEQF2266_AEE66593.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66594.1 tracheal colonization factor precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHIYGNMNRATPCRGAVRALALALLGAGMWTLSPPSAWALKLPSLLTDDELKLVLPTGMSLEDFKRSLQESAPSALATPP
SSSPPVAKPGPGSVAEAPSGSGHKDNPSPPVVGVGPGMAESSGGHNPGVGGGTHENGLPGIGKVGGSAPGPDTSTGSGPD
AGMASGAGSTSPGASGGAGKDAMPPSEGERPDSGMSDSGRGGESSAGGLNPDGAGKPPREEGEPGSKSPADGGQDGPPPP
RDGGDADPQPPRDDGNGEQQPPKGGGDEGQRPPPAAGNGGNGGNGNAQLPERGDDAGPKPPEGEGGDEGPQPPQGGGEQD
APEVPPVAPAPPAGNGVYDPGTHTLTTPASAAVSLASSSHGVWQAEMNALSKRMGELRLTPVAGGVWGRAFGRRQDVDNR
VSREFRQTISGFELGADTALPVADGRWHVGAVAGYTNGRIKFDRGGTGDDDSVHVGAYATYIEDGGFYMDGIVRVSRIRH
AFKVDDAKGRRVRGQYRGNGVGASLELGKRFTWPGAWYVEPQLEVAAFHAQGADYTASNGLRIKDDGTNSMLGRLGLHVG
RQFDLGDGRVVQPYMKLSWVQEFDGKGTVRTNDIRHKVRLDGGRTELAVGVASQLGKHGSLFGSYEYAKGSRQTMPWTFH
VGYRYAW
>SEQF2266_AEE66595.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLIAPASPQAALSGEPPHGPRARMRRTLLDTAQRLMVQGITPSVAELAEAAAVSRATAYRYFPSQSALIAAVVDQSLGP
ILQWQPQSDDAAERIDELLRFAYPRLQQHEASLRAAIMVSLQQYAEASAGQNPDTPRLVRGHRVDTLKHVTAPLASQLEP
AAHQRVIRALSLLYGTEVFLILKDIWHLELDDIVDVVTWAAQAIVRQAQQEAGIAPTSGKTPAKRKRNAPG
>SEQF2266_AEE66596.1 hypothetical protein BPTD_1194 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQEIEQRIYLAATYDTKGEEAEYLRQLLRRDGVMVVTVDVATSGQGSPAMVSAQEVAACHPQGAQAVFTGERGSAIVAMA
LAFERYLAGQRDVGAVLGIGGSGGTALVTPAMRALPVGVPKLMVSTMASGNVAPYVGPSDIAMMYSVTDVAGLNRISRRV
LANAAGAIAGAFRQARQPIADDGRPAVGITMFGVTTPCVQHVTAALHDRYDCLVFHATGTGGQSMEKLADSRLLAGVLDL
TTTEVCDFLFGGVLACTDDRFGAIARSGVPYVGSCGALDMVNFGALDTVPAACRERLLYPHNPQVTLMRTTAQENARQGA
WIAERLNRCEGQVRFLIPEGGVSALDAPGQAFHDEAADAALFQALYDHVRQTDKRRLVRVPCHINDPLFARAAVEQFHEI
SQ
>SEQF2266_AEE66597.1 hypothetical protein BPTD_1195 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRFERSALLDKFQDMVRRRQPIVGGGAGTGLSAKCEEAGGIDLIVIYNSGRYRMAGRGSLAGLLAYGNANDIVLDMARE
VLPVVRHTPVLAGVNGTDPFCNFDAFLDELARVGFSGVQNFPTVGLIDGTFRANLEETGMGYGLEVEMIRLAHAKGLLTT
PYVFDPDQARAMTAAGADIVVAHMGLTTGGNIGAETALSLDDCVARIDAIAAAALAERGDVIVLCHGGPIATPQDAAHVL
QRCRHCHGFYGASSMERLPVEQALTATTRAFKQLSF
>SEQF2266_AEE66598.1 hypothetical protein BPTD_1196 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHLVYVSRVVAAPIERVWPHLRDFNGLSAWHPGVADSRLEEGGRDDAPGTVRFLSLNPSGYVRERLLMLDDAGRSLRYA
IIETDLPMRDYVAGVDLCPVTEGGGTFAQWWADFDVVAGANRDEVARLVGEGVFAAGLQALDQYLRDRQG
>SEQF2266_AEE66599.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRLPKHVTLKHLTAFVAVAQESSFTHAARRLFQTQSSVTTLVRQLETALGTQLFARTSRKVLLSAAGQDFLPRVMRLLA
DFDGVIEDVVRYGALERGRVSVAAAPSAITQLIAPAAADFARRHPAIRLYLRDDNSGRIQRQVAAQEVDFGLTSRWADAP
GLAFDPLLEDRFGVLYRADDTSIQPGRDGHVRWERLSHRKLVGVVDETGIMALLRARADLPIEAAAPFYEASSTTSQAAL
VKAGLGVALLPALAVERVREPGLAFALLARPTVMRTLCIIGHQERALSPAAAALIDTLRAYVRQATLPAGCRPAGRNSRA
>SEQF2266_AEE66600.1 N-acyl-D-glutamate deacylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQNAEKLDFKITGGWIIDGTGAPRRRADLGVRDGRIAAIGELGAHPARHAWDASGKIVAPGFIDVHGHDDLMFVEKPDLR
WKTSQGITTVVVGNCGVSAAPAPLPGNTAAALALLGETPLFADVPAYFAALDAQRPMINVAALVGHANLRLAAMRDPQAA
PTAAEQQAMQDMLQAALEAGAVGFSTGLAYQPGAAAQAAELEGLARVAAERRRLHTSHIRDEADGVEAAVEEVLAIGRGT
GCATVVSHHKCMMPQNWGRSRATLANIDRAREQGVEVALDIYPYPGSSTILIPERAETIDDIRITWSTPHPECSSEYLAD
IAARWGCDKTTAARRLAPAGAIYFAMDEDEVKRIFQHPCCMVGSDGLPNDARPHPRLWGSFTRVLGRYVREARLMTLEQA
VARMTALPARVFGFAERGVLQPGAWADVVVFDPDTVADRATWDEPTLASVGIAGVLVNGAEVFPQPPADGRPGQVLRAGA
>SEQF2266_AEE66601.1 hypothetical protein BPTD_1199 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKTLAVLALMAALPAAHADFPERPITLIVPFPAGGPTDIVGRVAAAKAGEILGQQIVVENRTGAAGTIGITATARAKPD
GYTLGLATVSTHGTAPHLFPNLAYDPIKDFTPVSNLVTSPNILSVNPSYPAADLTAFVAHVRANPGRDGYANAGAGGVND
LGMIWFLQLIGGKMTSIAYRGSAPALTDAVSGVVPVIFDNFPSSLPYIKSGHLRPLAITGAARNPRLPEVPTFAEQGYRD
YDVTAWYGVVAPAGLPDAVRDKLAQAFAQAVRDPATAAKMEETSAFPLGNTPAEFAAQIQAEQARWKTVIEKADIKLQ
>SEQF2266_AEE66602.1 oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLPPHPRLLAAAGLVLAWLLLYLWAWRQARMRAASQARALRALEARPGPQTVLVAYASQTGFAAELAEHTAAALASGGL
QARVAELGQIDAATLGHYARALFIVSTYGEGDPPDAAAPFADTAMQSGAGLGALRYAVLALGDSSYAHFCGFGHRLDDWL
RANGAAPLFDLVEVDAGDAAALRHWQHHLGVVTGCTDLPDWQAPAYQAWRLARRTLLNPGSQGAPCYFIELTPPHSTAPQ
WQAGDIAEIGPRDAPDSPLHAHREYSIASLPADGAVHLLVRQMRTADGALGLGSGWLTHTAQTGQAIDLRVRANRNFHPP
ADARPLILVGNGTGLAGLRALIKARRSAGHGRNWLVFGERSAAHDWFCRDELEQWRGEGWLEYVDAVFSRDAPQRRYVQD
LLRDRAERVRDWIREGAAVYVCGSLHGMAEGVHQALADILGPAQLQALQHAGRYRRDVY
>SEQF2266_AEE66603.1 thiamine biosynthesis lipoprotein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMARPPSYAPPLAARLPSAPPRLSGEPVALAGASMGTTWSARLALPPGVTRQQAQAAIAAALDEVVAQMSTWEAGSDIS
RFNRAATGWQALPEALFHVLSHALDLADASGGAYDPTIGALVDAWGFGAGPRVHEPPAAAAIAAALADCGHGRVRLDAQA
RRAWQPGGVRLDLSSIAKGYGVDRAALALRALGVTACLVEVGGELRAHGVRPDGLPWRVAVEVPDASGAHALAVPLRDQS
IATSGDYRRYIEQAGRRYAHTLAPRTGKPLDNDLASVTVIHPECMLADGLATALGVLGAAAGADYAARHDLAALFILRGA
AGHEVRATPAFAALLDRP
>SEQF2266_AEE66604.1 hypothetical protein BPTD_1202 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAVAKLAAALTLALPLAAQAHDVWVLPSSTVLSGVDSWITVDAAVGNDKFYFNHAPLRLDGLDIIAPDGSAAQAENVSR
GKIRSTFDLQLKQNGTYRVAVVNDGVFARWKEDGKPKRYFGKPEGMAAAVPANAQELEVSQSLGRVETFVTAGKPGAIKP
VGKGLELVAVSHPNDLYSDEPATFQMLLDGKPAAGLEMEIVPNGSRYRDKVEEIELKTNADGKFQVKWPQPGMYWVHTEA
EDDKVSVPTATKRRMSYALTLEVLRP
>SEQF2266_AEE66605.1 hypothetical protein BPTD_1203 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKLLLSVLLAGLVARTAYAADLGLSVEIPRLDVAEYHRPYVAIWIEQADQSVAGDLAVWYDVAKKNNEGTEWLKDMRQW
WRRSGRNQQFPVDGVSGATRPAGKHALSFAGTAKPLADLKPGKYAVVVEAAREVGGRELVRVPFDWPPQQAQQLTARGEH
ELGAIAVDLKP
>SEQF2266_AEE66606.1 hypothetical protein BPTD_1204 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDGKTSSKRRAYWLKTLHQWHWISSALCLLGMLLFAVTGLTLNNASHIESRARVDTRHLELPAPLRAELAAAAPARPALP
PALLEWLDRELDVDARGAAAKPEWSPDELYVSLPRPGGDAWLSIDLQSGELEYERTDRGWIAYLNDLHKGRHTGLAWSWF
LDIFAVACLVFSLTGLVLLKMHAGNRAATWPMVGLGVVIPVVLALLFIH
>SEQF2266_AEE66607.1 ABC, transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSNPVSASCAPVLQVHGLTKRYGERVIVDGLSFALRRGECYGLLGPNGAGKTTTLRALLGLTPFDDGAVEVLGHAVPAQ
ARQARARLGVVPQLDNLDPDFTVAENLLVFGRYFGLSDAQVRARLPQLLAFAALAAKADARIGELSGGMKRRLTLARALI
NDPDLIIMDEPTTGLDPQARHLIWERLKALLARGKTILLTTHFMDEAERLCHRLGVIDHGRLITEGAPRALIERCLEPQV
VEVYGDDLHAWLAAHRAALPARVEVSGETAFCHTDDATPVVQALQGWPDLRYLHRPANLEDLFLRLTGRGMREDA
>SEQF2266_AEE66608.1 ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAGAWGWPPLTRRCVAVLRRNFLVWRKTALTTVLGDVLDPVVALLALGFGLGALLPGIEGVPYVTFLSAGSMCVGALYG
ATFEATYNAFSRLHVQRTWDAMLSTPLDLDDVVWAEILWAAAKALKSGIAILLVVVALDIARAPTLLWVPPVLALAGLAF
ASMALVVSALARGYEFFMYYFTLGVTPMVFLSGVFFPASQLPAALAGPLQWLPVAPAVNLIRPLTLGQVPHAWWADVAQL
AVTAALGIWLVAVLMRRRLLR
>SEQF2266_AEE66609.1 hypothetical protein BPTD_1207 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVTDAVLNHAGREWGWVALRGVVAVLFGLMAVLMPGITLSALVLVWGAFALADGIFALVAGWRIRDQDKPLWPLILVGLT
GIAAGIATFAWPGLTALVLLYIIAFWAVIGGVFQIAAAIRFRKDIENEWLHGLSGALSIVFGALLLFQPGAGALALVWVI
GVYAVLFGVLLLALAFRLKNHVATPA
>SEQF2266_AEE66610.1 camphor resistance protein CrcB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTYAPLNFIAIGIGATLGAWLRWVLGLRLNGAGWPWGTLTANLVGGYLIGVMVALIASHPEWPAWIRLAAVTGFLGGLT
TFSTFSAETVDMLERGVYATAAAYAGASLAGSLAMTGLGLATVRLLLR
>SEQF2266_AEE66611.1 hypothetical protein BPTD_1209 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKVAVIGAGWAGLAASVALREADAKVTVFEAGRTPGGRARRVVHPEFGDDLDNGQHILLGAYGETLALMRRLGRNPDALL
MRRPLRLASLDGGFRLSAPPLPAPLHAAAALLLARGLPWRSRVAAVRLMHYLRQMQWQAPRDWTVTQLLDHTRQPAGIRQ
SVWAPLCLAALNTPPAQASALLYAHILRDSLTGHRRNSDLLLPYADLSALWPDVAARQATMRYGNTVRRLTPQTHSVEVN
GERFDAAVLAVSPQVAARLLEHALAEQGSGGLLRALQAFDYEPIATLNLRLAGPWPLPEPMMMLREEPARGFHGQWLFDR
SRLTGRGERGELAVVVSAARAVAAADREQAIAALTRQVAEQARRHPARLAPMPAVEIAELFVEKRATFAAMPGLARPLNS
TPWRSLALAGDWTDTGYPGVLEGAVRSGLQAARVVLGGAATPD
>SEQF2266_AEE66612.1 putative phytoene synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPDEYCQEKAAKSGSSFYYSFLFLPPARRRAITALYAFCREVDDVVDECSDPSLARVKLAWWRTQVDQMVDGKPDHPVT
RALQPHLADCNITRERLLAVIDGMEMDLDQTRYLDWPGLRKYCWHVAGVVGELSAGVFGYQDARTLDYAGKLGLAFQLTN
IIRDVGDDARRGRIYLPVNELQQFEVKAADILNGVHSERFSALMRFQAERTRGLYREAMQALPETDRRAQRPGLMMAAIY
HALLDEIERDDWQVLHQRISLTPVRKLWLAWKTWVSGGAPLVRRLAR
>SEQF2266_AEE66613.1 putative phytoene synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAIDHYENFPVASLLLPRRLRGAVTDIYRFARAADDIADEGAAEDAERLRQLAAFRAELHRIGAEPGTLAVPASADLAPI
FTPLAATIARHQLPITPFFDLLSAFEQDISVKRYESHDDLLDYCRRSANPVGRLMLHLYGAVDEANLRDADAICTGLQLV
NFWQDVRIDWRKQRVYLPEEDLRRHGVSRDDLAACRLTPQWRELMAFEVQRTRALLHSGAALPRRLPGRIGLELRLVVQG
GLRILQRIEDAGYDVFMNRPELGAKDWAVMLWRAFT
>SEQF2266_AEE66614.1 alanine racemase, catabolic [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRPIFASISQSALRHNLATVRRHLDDVAAKADGTPPSIWAVIKANAYGHGIEQAVAGFSAAQGLAMLDLQEAVRCREAG
WGGPILLLEGFFQPSDLEIVDRYHLATTVHTREQFDMLAHARLSRRVDIMVKLNSGMNRLGFAPDAYGSAYARAQQLHEY
GVVGGIGKMTHFACADGPQGVTQQMNVFNGATAHLAGATSVCNSAATLRYADLAVGHDGQTHWVRPGICLYGASPFADAQ
AGAFGLIPAMTLRSELIAIQDIPAGAAVGYGAIFRADRPMRIGVVACGYADGYPRHAGTGTPLTVGGVRTRLVGRVSMDM
LMVDLDPVPAAGIGTPVVLWGEDGPSVDEVAEAAGTIGYELLCALAPRVPVRHEG
>SEQF2266_AEE66615.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKDKCVLVTGATKGIGWALTQRLTDLGCHVVGIARNTADVDFPGYLYACDLADAGRTEEVLREIRDKFPVDAVVNNVGIV
APQALGEIDLATLYSVLDLNVRVAVQVTQTFVESMKVRRSGRIVNICSRAILGAYDRTSYSAAKSALVGCTRTWALELAE
YGVTVNAVAPGPVETELFRRGHPAGSDAEKRAQASIPMKRFGTPAEVAAAVAFLLSDDAGFITGQVLGVDGGGSLGGH
>SEQF2266_AEE66616.1 hypothetical protein BPTD_1214 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPHLPPDDDDRDLRALYRELPRHEPDIMLDASIREQAQRAAEADRRARRPRATWHPAWAVAACVVAVSALFVFTDLEQY
ALQPAAEVELQAEQEAAQATRDAVPEPPAPDPALAAPPPLGALAPEAARGAAAESSAQDAAPARRGYMPQRAAPAVRAEK
QQQENLAASARQRDDPAYAQRVERIRALVREGKPQEAAAEVLAWRRAAPGLALPPDLEQLAPADGGTPGQ
>SEQF2266_AEE66617.1 RNA polymerase sigma factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTASAADEALMLAYGAEGDMDAFDALYARHRAGLYRYILRSARNAAQADDIFQETWSRVIDARARYRPQARFTTWLLQI
AHNLLVDAHRRQPAPVAPEQAEAALASVPAAEHEQPEARLSEFQQRRRLQLAIERLPDEQRLAMLLRLEHDLDVEEIAQV
TGVSRETVKSRLRYATRRIREELSSESAPRSP
>SEQF2266_AEE66618.1 DNA repair protein RadA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKSRTIYVCAECGGTSLKWQGKCPHCSAWNTLEETVESAAPSAGGHRYAPLAAASPVRSLSEIEARETPRQPTGLDEFD
RVLGGGLVAGAVVLIGGDPGIGKSTLLLQALASLSATTKVLYVTGEESAEQVALRARRLGLQTGNVDLLAEIRLEAIQAA
VSEQKPTVAVIDSIQTLYSGELTAAPGSVSQVRECAAQLTRLAKQTGIAIVMIGHVTKDGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAFKNRFGAVNELGVFAMTDRGLRGVANPSALFLSQHQQQVAGSCVLATQEGTRPLLVEVQALVDTSHAPN
PRRLTVGLEGNRLAMLLAVMHRHAGVSTYDQDVFVNAVGGVRITEPAADLPVLLAIMSSLRDKPLPAGLVAFGEIGLAGE
IRPAPRGQERLREAAKLGFSVALIPKANAPRQPIEGLEIWAVDRLDAALDKLR
>SEQF2266_AEE66619.1 hypothetical protein BPTD_1218 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLLVIAACLASGALIGFMGGALGIGGGLIAIPALGLLLGMPQQLAQGTALIMVLPTIMMAVRKYHQHARIDMRVAGAGA
AGAVVFTWVGAQLALGIASRTLRLSFAVFLFFIALFYVYQTVRKRAAAAPAAPARPAPVLSPPRASVLGVLCGTLGGFFG
VGGAVLAVPIITSVFRLPQTMAQALALTMVIPGSMIALVTYTWAGQADWWIGVPLAAGSLVFVPVGVRLAYRLPERKLRA
CFAAMLFATVALLIFEA
>SEQF2266_AEE66620.1 hypothetical protein BPTD_1219 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTQSRIAAFLSTSALCLGLAAAPSAYAAQSDAQSGAKSSVKAPSGGKHAKSEKHAKSGAHHGAHHAKTGSTSTK
>SEQF2266_AEE66621.1 multidrug resistance protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPAAAPSPGFGATMRDIARQAWPVLISQWAGISFGVLDTAMTGHASPQDLAAMSLSVSVYITVFVGLMGVVHALIPILA
QHFGAGQQREVGSTWGQGVWLALGLSVVGAILMLFPDAWLSLSGDVDPAVRDRVAAYLRALVLALPATLVFRTIYALGTA
VSRPKVVMSINLAAVFVKAFCNWVLIYGKFGLPALGAVGAGLATAISGWLSLAAGLWIITHDRYYRRFRLRVGRPDWRAL
KELLRLGLPMGGSYLVEVSAFTFMALLVAREGTYVSGGHQIMSNLAALCYMMPMALGVATAALTAQAIGAGRPDLAHRTG
MAGLALGLLGAALTAAVLLVGRPLIIAAYTDDLEVAAVAASLLAIIPLFHLCDSMQCINSYLLRAHKVAVMPLVLQTVAL
GGVGLLGGWWLGFGPGRGGLDPLRTALMPGSPAGAGTMWLMAMAGLGLSAVLLHYWYRRIARLALARG
>SEQF2266_AEE66622.1 hypothetical protein BPTD_1221 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPISRSTPARLTVQATAKLPRLVLLGLSLIYIVAGLFMRDPWKTDDVVGLATMVTALREGGMTWLLPQVGHLAHAEEGP
MITWVGGASMWLFGPWLGDITAGRLPNLLWFGIATVSVWYGTYLLGRRAEAQPLKLPFGGEPAARDYGRMLADAALLLLL
ATVGILQRLHETSVVPAIMAWQALAFYAMARTLDRPFLGATTLGVAVAGAFLTRGWIGAAPVMVAAVLAFYPRSLLWQRV
RWLPWAALIAAALMLAWWLPATLAEGSDYWIRNWKTWTLASYDWPDLRITGRTLRDLPWYLWPTWPLALLAIWRWRAWLY
APHIWVPLVLAATAALMLLFLDGPNDAEYAMLAVPCAILGAFSLPTLRRGVVNTLDWFAVMCFSLTAATAWLGWVALHFG
WPAQISRNIARQTTGYEASISWLASALALVISAAWVVLVVWRLRSRPLALWRGTVLSAGGLTATWILLVLLWQPAVDYAR
SYRTVSGQLAEALQANLQPGECMRGLSLGSGQRASFLVFDNMSFTYDSKCTLVLQQTTHSSLRDGTAAYSDGATELWRGG
RRADRHEVFRLLRVTPTR
>SEQF2266_AEE66623.1 50S ribosomal protein L31 type B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKEGIHPEYREVVFMDVQTGNKFVTRSTIHTRETVEIDGKTYPLFKCDVTSESHPFYTGAQTRIVETGRVEKFRARFART
AGTVKSAS
>SEQF2266_AEE66624.1 putative tryptophan oxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPTPTQRPEAIVHDEKAQLDFARDMSYGDYLHLDELLGAQHPLSPEHNEMLFIVQHQTSELWMKLMLHELRAAIAAIQQ
DRLQPAFKMLARVSKILEQLVSAWDVLATMTPPEYSALRPYLAHSSGFQSYQYRQIEYLLGNKNAAMLQPHAHRADLLAQ
VRAAFEAPSLYDEALRFLARSGLAVPAGALQRDWTQPYRADDQVEQAWLTVYRQSERYWNQYQLGEKLTDLEDAFRLWRF
RHVTTVERIIGFKRGTGGTSGVTYLRKMLEVVLFPEIWKLRTDL
>SEQF2266_AEE66625.1 hypothetical protein BPTD_1224 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRLWDISPPVSADSPVFPGDTPYRQQWKWSLTPDCPVNVSEITLSPHIGAHADAPLHYENGAAAIGAVALEPFLGPCRV
IHAIGCGPLILPEHLAHAQAGLPPRVLVRTARHAALQWWVDDFSAYAPQTIEWLAGRGVTLIGIDTPSIDPASSKTLDSH
HAIRRHDMRVLENLRLDDVDEGDYELIALPLALVQADASPVRAVLRELA
>SEQF2266_AEE66626.1 DNA repair protein RadC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLPEPLLRADWPRERLLRHGAATLSDPELLALALRTGVAGCNAVQLGHDLLRRFGGLRGLLGTSPAELQVVPGLGTAKA
CVLAAVLELARRTLEEDLVRQDALANPDLVRRYCQAALGHRKVEHCIALYLDARLKLIICAEVARGTLTQAQIYPREIVR
EALRHHAAALILTHNHPGGTAAASAADIAMTRQIRQALALIDVRLIDHVIVAGAATVSMAAQGHL
>SEQF2266_AEE66627.1 FkbP-type peptidyl-prolyl cis-trans isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNVLVRPDSYLTLHYRIVLASGPAEGSVFTDTFDGRPATLQMGSGQWAPGLEAALLDHAEGERFSVALAPAQAYGERNPD
LIQKVTRAMLAEHAGADATFEPGDLVEFAAPNGGRYSGVLKEINADWAMFDFNHPLAGTALRVDVAILGVL
>SEQF2266_AEE66628.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAEVTAADAEVLLAQPRGFCAGVDRAIDIVERALELHGAPIYVRHEIVHNRYVVEDLRGKGAVFIDELDQAPAGAIVVF
SAHGVSQAVRGEAEARGLRVFDATCPLVTKVHIEVARMRAAGREIVMIGHKGHPEVEGTLGQAQGGMYLVETVEDVAALQ
VSDPGNLAYVTQTTLSVDDAAAVAGALKARFPGIVEPKKSDICYATQNRQDAVKLLAPECDLVLVVGSTNSSNSNRLREV
AERKGVAAYLIDGAHAIDPAWLQGRRSIGITAGASAPEVLVQQVVERVRELGAVSVRTMPGLEESVAFPLPKGLSRKIAQ
TESLE
>SEQF2266_AEE66629.1 putative glutathione-S-transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELYSYFRSSAAYRVRIALNLKGLQYDYRAVHLLKDGGQQLAPQYCALNPNALVPALVDGDAVLTQSLAIVEYLEETHPQ
PPLLPSDALGRARVRAIAQTIACDIHPLNNLRVLKYLKHELKVSEEAKNAWYKHWVELGLAGVEAMLAGAPHTGRFCHGD
APTLADLCLVPQLANARRFGCDLSAMPTLARIEAACAELPAFQQAAPAAQPDAE
>SEQF2266_AEE66630.1 hypothetical protein BPTD_1229 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAMHHARSGELIDLRPLGESLRETVSQALVRADHLEVMRLVLPRDQQLPSHAIDASAITIQCLEGAVMLTAQDTTQRMPA
GTLVYLAPGVAHAVKALEDSTLLVTLMLARP
>SEQF2266_AEE66631.1 hypothetical protein BPTD_1230 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDAFKQDSRIGVTVLTGFLGSGKTTLLNRLVQEPEYAEAVVIVNEFGDIGVDHHLVRNVDDRIVLLEGGCICCTASGGLV
DTLRDLFMLVVRRRIKPFKRVLLETTGLAGPASVMFSLRHDPFLAERYAYHGAIAMVDAQHVREQLMVQPEAAQQIALAD
LVVFSKADLAGQVQLASAMRDVARANPGVPMCVVRRGEPLDERLHGDFLVRERRQAAPLGRWLGAFAAPPGGPHPNVAHF
SLNLSVPLTRGMFLARMSEIQAAYDRGILRIKGLVCFEAEALPWAVHGVHRQLYPLEALPQWPGDDRQSRLVFILRGLDR
DAVQADVARRLQQG
>SEQF2266_AEE66632.1 hypothetical protein BPTD_1231 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPLSLAAQEQIFQAARTFNRYTEQSISDATLHELYELMKWGPTAMNSQPGRFIFLRSAEARQRLAPALSPGNLEKTLA
APVTVIVAQDTQFYEHLPTQFSAYDARPVFENNADAARATAMRNSSLQGAYLIVAARMLGLDAGPMSGFDAAKVDAEFFP
DGRCRANFLVNLGYGDPAGNYPRGPPPGLRHRGANPLIARP
>SEQF2266_AEE66633.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDRLKAMQVFVEVADRGSLSAAAMHLGMSRAMVSRYLAELEAWVGVRLLHRTTRRLSLTPAGSETLPRCRRMLEMVGDMR
EAVAAPDAEPRGLLRVTAAMSFGGAQLAEAVAEFVRRHPAASIDLLLVDRAVNLVEERVDLAVRITNDLDPNLIGRRLAD
CRSVVCVAPQYLQQHGAPARAEDLSLHNCLTHSYFGRSLWRFERAGEPVEVPVGGNITANETDVLMRAALAGAGIVMLPT
YLAAGQIAAGSLRLLLPDCAPPVLGIHGVYVSRKQMPLILRTMLDFLAERFSPAPWDAALKGR
>SEQF2266_AEE66634.1 hypothetical protein BPTD_1233 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDSEAIFVLETALLCASQPMQFAEMRKLFGDDQDIDNNALRAWLEALQAQWNERGLELVQLASGWRFQSRPQMQRYLER
LNPEKPPKYSRAVLETLAIVAWRQPVTRGDIEDIRGVTVSSQIVKVLEDRGWIEVIGHRDAPGRPALFATTRQFLDDLGL
RALDELPPLESAQAAAALAGLDLGGAEVLVEAVDAAEGDAARDEASGDEAAGQVAASLGDAQPEVAQAGVDGVESAVSPE
PVLPVSVDDDANEPAETAAASLPGAGVAEPAHESAGAAPDDGNGPVEVPPLQPDQISLPDEPAEARPHVPAPEVGPGEPQ
PEIVPAAPEPVTPPAPGRDEADGVVSNPEDDEPAASGRLPKV
>SEQF2266_AEE66635.1 hypothetical protein BPTD_1234 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTNTTMQDDNSFPDNESPVAQPPVDESAASGEAGDGEGGARARGRKLRTPFRRRRGDAAAAGEAGADEAGSQPAAQSEG
DARASERDADQALAYLDNAARIEQRLGKYLNSEAVMPKLHKVLADAGIGSRREMEELIVAGRVSVNGEPAHIGQRVAPND
QVRVNGKPIARPNAKKPPRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSGDMANRI
MHPRYGTEREYAVRVLGEMDDAQRKSLTEGIELEDGKAAFGSFEYLGGDGSNRWYRVTLQEGRNREVRRMFEAVGVTVSR
LIRTRFGDIVLPRNLRRGRWEELDGSLVTALMVQLGLLRDGDESEGRRKSRQPQSHDSALPPGFGTLERNGMNGARIGRR
GKLQGGRPGSAAACPSDPFGTGLMITGGYANGHPLGNDSAAGRGGKGKPAKGKAGGDKPQRGQGRKAAGAQAGGQGAAAK
PAGARGGKKAGGRAAAPGAKGAGGRAGGNKAASAGGKAAGVAKPASPTGNRGPAAPKPQRARRGGGGAGGGGGGGGGGGG
RGDDWQPKGAGAHESRLGFMGGRGGRGR
>SEQF2266_AEE66636.1 hypothetical protein BPTD_1235 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADLFALTEEALAGMDIELVDVERAAMGLLRVTIDRVDGVRIEDCEQVSRQLSRVYEVENIDYKRLEVGSPGVDRPLRNE
AEFRRFAGERIEIKLREALDGRKVFSGTLRAPEADGASGQDDTAGAGKAVFGLEFEAKKNDIQVLSFTLDDIERAKLDPV
LDFKGKKR
>SEQF2266_AEE66637.1 transcription elongation factor NusA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSREILLLVDALAREKNVTREVVFGALESALASAMKKRFKDDADIRVSIDRETGGHEGFRRWLVVPDEAGLQEPDKQELL
SEAREMAPDIEVGEYIEEALEPVEFGRIGAQAAKQAILQKIRDAEREQVLNDFLDRGETIISGSIKRMDKGDVIIETGKI
EARLPRSEMIPKENLRVGDRVRAFVLRVDHAARGQQVILSRTSPEFIRQLFENEVPEIEQGLLEIKAAARDPGVRAKIAV
VAYDKRIDPIGTCVGMRGSRVTAVRNELGGEQVDIVLWSEDPAQFVIGALAPANVESIVVDEDKHAMDVVVDEENLPKAI
GAKGQNVRLASELTGWQINIMTPEESLNRQETERAALRATFMSKLDVDEEVADILIDEGFTGIEEIAYVPMQELLEIEAF
DEDTINELRARARNALLTEAIAQEERLETAQDLLELEGITPELAAKLAERQVHTRDDLAELSTDELAEIAGLQEEEASDL
IMRARAHWFDEE
>SEQF2266_AEE66638.1 translation initiation factor IF-2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSNTVAQFATELKMPANVLLEQLRAAGVDLKSVDDAVTDSDKAKLLESLRRAHGATEGKKITLTRRQTSEIRQADATGR
SRTIQVEVRKKRVFVKRDPAELAAEQAAARAEEAAAEAVPAEAAPAPAEPVRAEPAVETAAKPVEPPVAEAPAEPVAAPA
AEPQPEQPAQAEAQPEPTPAAQAEPEPQPEPQPEAAPAQAVAEPVEPAKNVSVTETEAEQARPEPVVHAQTELTSQTPTP
VAQPSAPAESPKSVKAEPAAAPKTTAKPGEIRRAAAPAAPDRAREEARRAAEAEAAALREMLSRPRKVLRAPEPEPQAGA
LSGTLHKPAGKPATTAAPKKDAKPGAPGAKKTIKTAEVSSTWSDDSARKKPADNKPAVATRDGWRAGGKGGRGGRNSRNQ
HQDRRHEQVQQEFIAREIHVPETISVADLAHKMSVKAAEVIKQLMKLGQMVTINQVLDQETAMIVVQEFGHTAIAAKLDD
PEAFLDETAAVTEAEAEPRAPVVTVMGHVDHGKTSLLDYIRRAKVASGEAGGITQHIGAYHVETGRGVVTFLDTPGHEAF
TAMRARGAKATDIVILVVAADDGVMPQTREAIHHAKAGGVPLVVAVNKIDKPEANPERVKQELVAEEVVPEEYGGDVPFV
PVSAKTGAGIDDLLENVLLQAEILELKAPIEAPAKGLVIEARLDKGRGPVATILVQSGTLKRGDVVLAGASFGRVRAMLD
ENGKQIQTAGPSIPVEIQGLTEVPAAGDELMVLSDERKAREIALFRQGKFRDVKLARQQAANLESMFDNLGEGTQTLALI
VKTDVQGSQEALVSSLTKLSTDEVRVQVVHAAVGGISESDVNLAIASNAVVIGFNVRAEQSAKKLAETNGIDLRYYNIIY
DAVDEVKAAMSGMLAPEKREEVIGLVEVREVYTISRIGTVAGCMVLDGVVRRDSQVRLLRNNVVQWTGHLDSLRRFKDDV
KEVKSGFDCGLTLRGNNDLQLGDQLEVFEIKEIARTL
>SEQF2266_AEE66639.1 ribosome-binding factor A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRHKSKSIPGRNLRLADQIQKDLAGIIQREIDMTRAGLITLSGVELSADYAHAKVYFTVLGAEPDTAAALLNEKAGWLH
SQLYKLLHIHTVPTLRFVHDPQITRGIEMSVLIDRANRPGPHSGVPDEPEDQS
>SEQF2266_AEE66640.1 tRNA pseudouridine synthase B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKRRGLALDGVLLLDKPVGLSSNHALQRAKRTVDAAKAGHTGTLDPFATGLLVCCMGRATKISGRMLEADKTYQATLQF
GEETDSGDLTGHIVARAPDGFAGVEEAALRDVLSRFVGTIEQIPPMYSALKRDGKPLYEYARAGIELDRPPRQVTIRHIE
LLSFSGMQAQIDVACSKGTYIRTLAQDIGRALGCHAHLAALRRTHVGPFSLDRAVTLEALQAMPDAKQALLAMNELPAGL
LPAT
>SEQF2266_AEE66641.1 GTP-binding elongation factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRALRNVAIIAHVDHGKTTLVDQLLRQSGTFRENQSVAERVMDSNDIEKERGITILAKNCAVEYEGTHINIVDTPGHAD
FGGEVERVLSMVDGVLLLVDAVEGPMPQTIFVTRKALALGLKPIVVVNKIDRPGARPDFVINATFELFDKLGATEEQLDF
PVVYASGLSGYAGLTDDVRSGDMRPLFEAIMKYVPQRDDDANGPLQMQIISLDYNSYVGKIGVGRINRGRMRGNMDVAFR
FGPDGEVQRGRINQVMKFSGLERVVVDEAEAGDIVLVNGIEDLHIGSTITDPSTPEGLPVLRIDEPTLTMNFMVNTSPLA
GREGKFVTSRQIRDRLERELKSNVALRVRDTGDDTVFEVSGRGELHLTILLENMRREGYELAVSRPRVVFKEIDGVKCEP
FEALTVDVEDAHQGGVMEELGRRKGDLQDMQPDGRGRTRLEYIIPARGLIGFQNEFLTLTRGTGLMSHIFHEYAPLREGS
IGERRNGVLISQDNGDAVAYALWKLQDRGRMFVSPGEPLYEGMIIGIHSRDNDLVVNPIKGKQLTNVRASGTDEAVRLVP
PIQMSLEYAVEFIDDDELVEITPKSIRLRKRYLQEHERRRASRENA
>SEQF2266_AEE66642.1 putative toxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRISPRAGWLAASLLCLLLPGARAWAASELILVRGYGNCPSGYAPLTYDQAHRPSLRARMRELSGNEPWPIHGLADGQY
LGGKYGGELKRARLADIRGLRDHFCLASGSDGAIGRGVHAWGHVPGWGAWQWRRTLPPATGLGHYSNVRVARLDDLPFGD
LCAVFTRDGNPVVQACISPQAGRLHRESYATLRRALETLRRQGLPLRVYVDHDRRPDFAAVPDVPAYSITGLATCNRGGC
M
>SEQF2266_AEE66643.1 hypothetical protein BPTD_1242 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPFKFTVPALAALLAAWPLAHAGAVHDYPSAVIEAYHIGQLHTGSTPFVCARFHPEGQASPQALRIACAVQRYGKARRH
FDEHVARIITCHAANRPTSLRVESDVWTDPQIYRLFSRAEILSIAPCGAGGLLP
>SEQF2266_AEE66644.1 hypothetical protein BPTD_1243 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEIKTAAEKLADIGPAVSMFGSARISRESPYYETCAAISAALAGAGFAIIAGGGPGIMEAANKGAFEAGGTSVGLNISL
PHEAHNNEYQTISLSFEYFYSRKATFFMHSMAYVAMPGGFGTLDELFEALTLIQTGKVPPAPIVLVGSEFWHGLVDWLGE
QLLANGMIAAHDLNLFIIEDDPAKVVRKVVEFHDKQGRTDSQYAPSLPA
>SEQF2266_AEE66645.1 DNA polymerase I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKTLLLVDGSSYLYRAFHAMPDLRNAQGEPTGALYGVVNMLRKLVQDHKAEYAVCVFDARGKTFRDDLFPDYKSHRPPM
PEDLAAQIEPIHEAVRALGWPLLAIEGVEADDIIGTLARQASAQGIDTIVSTGDKDLAQLVDPHVTLVNTMSGEVLDVAG
VNSKFGVPPERIVDYLMLVGDTVDNVPGVNKVGPKTAVKWLAEHGSIDALVAAADSVKGVAGNNLREAIPNFPLTRTLLT
VKCDCDLTGHVSDWEDLAWRERDAATLTALFDRYGFRTWLRELTGDQERLPTGDARAVPQAVAPAELDYRIITDWAAFDA
WMALVEDAPLVALDTETTSLDEMQARLVGLSMAVKPGVACYIPVAHRGPEAGDQLPRDEVIARLRGWLEDAGRAKLLHHA
KYDTHVFANEGVSLAGVAEDTMLQAYVLESHRGVGLNDLAQRFLGRSGVNYEDLCGKGAKQIGFDEVAVPLAGHYSCEDS
DFTLQLHEVLRPRVAEDEGLERTYLLELQVSRVLTVVERNGVKVDAQELGRQSHKLGQEMLALEQRAYELAGQPFNLNSP
KQLGEILFGRMGLPVVRKTAGGAPSTDEEVLSKLAQDYPLPQVLLEYRGLSKLKSTYTDKLPRMISPATGRVHTHYSQAA
VITGRLASSDPNLQNIPVRTEAGRRVREAFIAEQGKLLSADYSQIELRIMAHVSDDANLQRAFAAGEDIHRATASEVFGV
PLAEVGAEQRRAAKAINFGLIYGMGVFGLASNLGITRDAAQAYIDRYFTRYPGVARYMDDTRRLARDQGYVETVFGRRLQ
LPDIRAASGPRRQGAERAAINAPMQGTAADLIKMAMVAVQDWLDAERLRTRMIMQVHDELVLEVPDEELAAVAEALPRLM
CDVATLRVPLVAEVGMGTNWEQAH
>SEQF2266_AEE66646.1 hypothetical protein BPTD_1245 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLLWILLATIAGGLIAVSIASWLAYRVFAKYLHHMVSLSVGVLLSVALLHLLPEAFETAHADARALFALMLAGLIGFFV
LEKIALLRHSHHHEGDGHHHHKGHNRREAGRGGVLILVGSSLHNLADGVLVAAAFLTDPMLGVLTAASIIVHEVPHKLGD
FVVLLNAGLARGRAFSLILFTSLCTAAGGVVGYFVLQEAQAAVPYVLVVAASSFLYISVADLMPQMHERVSLADAVPQLL
LVGAGVLLIYGVTSFMHHEHDPAHEHGQHAIEAADHRH
>SEQF2266_AEE66647.1 putative carboxymethylenebutenolidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFAAAAGSTAPTTIHTDTQGLSHGDFELAVPGGPVAAYYAAPAGREQLPIVLVVQEIFGLHEHIKDVCRRLAHDGYLAV
SVNLYQRQGDASRYDNIPGLVAELVSKVPDEQVHADLDASLAWAAAHGGDGARVGVTGFCWGGRTTWMYAARNPAVKAGV
AWYGRLSSGHGPLIKQVPLDVAGSLHAPVLGLYGGKDESIPLDDVRAMEARLQQGGAPAQASRIVVYPQAGHAFLADYRP
SYRAADAQDGWRRMLDWFALYL
>SEQF2266_AEE66648.1 hypothetical protein BPTD_1247 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGLLPLLDFAGYVALLLWGVHMVQTGVQRAFGAALSIALGRALGTRLRAFASGLGITAALQSSTATGLMITGFAAGGVV
ALVPALAAMLGANVGTTLIVQLLSFDLTSLAPILILAGVWMFRRAAPGRTRDLGRVFIGLGLLLLSLHQLVQLFQPFETA
PLLGVLLDALASQPVAAVLLAAALTWAAHSSVAVVVLVMSLASHGMVNPALAFALVLGANLGTAINPMIEGVTGDDPAAR
RLPLGNLLTRVAGVLAGIILLPWLQPWLSGLAGDPAHAVANFHTLFNVVIALVFLPILTPYAALLTRWLPKRADPNDPAR
PQYLDEWAHDVPAVALGNAAREALRMADMLQTLLLYARAGFKRDNRHRMVQARQLDSALDKLETAITTYLATLDQENMTR
EDHQRLDTILAFCSNIGHAGDIAYHGLLNHIGRLRKQGLLLSADQRASLDATLGELIANQRQAAALFVTDDLRQARALAG
EKARFRALEAEAAETQLQQIKSGKVDAAEVGALYLDILRDLKGINSHVVGASAYPLLARHGELLPSRLRDAGN
>SEQF2266_AEE66649.1 L-serine dehydratase 1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVSVFDLFKIGIGPSSSHTVGPMRAALLFVQGLERDGLLARVASVRAELYGSLGATGKGHGTDKGVLLGFMGQAPDTVD
PAAIAGMLQAVRANRRVLLLGRHDVPFVEKEHMLFYRREALAEHPNGMKFHAFDADGQPLRESRYLSVGGGFVVTAGAAN
AQVIGAHDQLPYPFRTGRELLDMCRASGHSVAGLMMRNELTWRGAAEIEQGLDRIWEVMQECVARGCGIGHPEADGDLPG
PLKVRRRAPELYRALTQRAERTLSDPLSVMDWVNLYAMAVNEENAAGGRVVTAPTNGAAGIIPAVLHYYDRFVPAANRAG
VHDFLLTAAAIGLLYKYNASLSGAEVGCQGEVGVACSMAAGALAAVQGGSVEQVENAAEIGMEHNLGLTCDPVGGLVQIP
CIERNAMASVKAVNAARMALRGDGHHYVSLDSVIKTMRETGADMKTKYKETARGGLAVNIVEC
>SEQF2266_AEE66650.1 hypothetical protein BPTD_1249 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQLVRPTLELPAGRRKVLLHSCCAPCSGEVMEAMTASGIDYAIYFYNPNIHPVKEYEIRKNENIRFAEEHGIEFIDADY
DMDNWFERVKGMENEPERGIRCTACFDMRFERTALYAHEHGFDTITSSLGISRWKDMNQINGCGERAAARYDDLVYWTYN
WRKGGGSQRMIEISKRENFYQQEYCGCVYSLRDTNRHRRAQGRERIHLGVKFYGVEEKL
>SEQF2266_AEE66651.1 glutamate-ammonia-ligase adenylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQYRPLIHESRLSVCLSPAMSSAPPFAAALAWSGHLRRRLDAHPDLAAWLANACAHPVSANVLAAWQAELSGPDAPEVLP
VEQCRGMLRKLRERVFLTLIVRDLGGQADLEEVVGAMTVLADIAVGTAYRSVAAELAAVHGLPREQSTGDPQEMLIVGMG
KLGGRELNVSSDIDLVMLYGDEGETDGPRRISNHEFYGRLTRRMMPVLSEVDADGQVFRTDLRLRPDGDAGPLAWSLDAL
EHYLIGQGREWERYAWLKARLMPAQAFADSNPDAQARQLESLRVPFVYRKYFDFDALAALRALRERIRQDWQRRALARNG
VDSANNIKLGDGGIREIEFIVQLSQLIRGGRMPALQRRGLLEALHAERAAGLVPEGDAQKLEAAYRFLRRTEHALQYRED
EQTHLLPADPAQRAALAAALGYEPAAFERTLAEHRAFVSQTFRNAFRLAGMGEEDDSPAPARTHANGHAMRPHAGALHDI
EERLAGQIQRDFPEHAEDLLRRTETLLGSHRVRSLPDSSRHRLEALLPAALTAATQTSAPMDAALRLFDLIETIAQRSAY
LALLAEYPDTLARVARMVAASPWAAQYLTQHPLLLDSLIDWRTLFEPLDFAQVAHQLAADLDACRLPDGEPDIERQMNLM
RDVQRQASFQLLAQDLEGELTVEKLADQLSALADLLLAETIRRVWPLVNRRPGAEPHLAVIAYGKLGGKELGYASDLDLV
FLFDDDREDAAELYAKLGRRMTSWLSTMTSSGRLYEVDLRLRPDGNAGLLAVSLEAFEQYQRSHAWPWEHQALTRARYAA
GDTEAGARFERIRADILVMPRDVQALRGEVLGMRDKISAGHPNRSELFDVKHDRGGMVDVEFVTQYLVLCHAATHRVLVN
NLGNIALLRLAGEAGLIPAPLALAAGDAYRTLRRAQHQLRLKGVDKARVPPGQLAAERATVCELWQTVLQDGTIAQAEVK
>SEQF2266_AEE66652.1 transcription termination factor Rho [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHLNELKALHVSQLLEMAAGLEIENANRLRKQELMFAIMKRRAKQGEQIFGDGVLEVLPDGFGFLRSPDTSYLASTDDIY
ISPSQIRRFNLHTGDSIEGEVRTPKDGERYFALVKVDKVNGSPPEAIKHRIMFENLTPLHPNQVMRLERDIKSEENLTGR
ILDIFAPIGKGQRGLIVAPPKSGKTVMMQHVAHAITTNYPDAVLIVLLVDERPEEVTEMQRTVRGEVVASTFDEPATRHV
QVAEMVIEKAKRLVEMKKDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRFFGAARNLEEGGSLTILGTAL
IETGSRMDEVIYEEFKGTGNSEVHLERRLAEKRVYPSINLNKSGTRREELLIKPELLQKVWVLRKFIHDMDEIQSMEFIL
DKMRATKTNAEFFDMMKK
>SEQF2266_AEE66653.1 thioredoxin 1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVVCFNPSYTSNKNSGRMLHARVAQRNPRITIMSEQIKNVSDASFEADVLKSGQPVLVDYWAAWCGPCKMIAPILEEVA
AEYAGRLTVAKLNVDENQDTAAKYGVRGIPTLMLFKDGQAAATKVGALSKSQLTAFLDGAL
>SEQF2266_AEE66654.1 DNA topoisomerase IV subunit B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATPRYTEASIRVLKGLEPVRQRPGMYTRTENPLHIVQEVIDNAADEALAGYGKQIQVTLHGDGSISVEDDGRGIPVGLH
PEENAPVVELVFTRLHAGGKFDKQGGGAYAFSGGLHGVGVSVTNALATRLEVVVWRDGAVHRLVFAGGDVIEALAPYPEG
GRKKSGTRVRVWPDAKYFDSPAIPMAELTHLLRSKAVLLPGVKVSLVNEKTGDTRTWQYQEGLRGYLAEALAGAELMIPF
FEGQQYAGADHDSFAEGEGAQWVVAWAEDGNVVRESYVNLIPTPAGGTHESGLREGLFGAVKGFAELHSLLPKGVKLLPE
DVFTRASFVLSAKVLDPQFQGQIKERLNSRDAVRLVGCFAKSALDLWLHSNVEYGKKLAELAIRQAQARQRSAQKVEKRK
SSGVAVLPGKLTDCESSDASRTEVFLVEGDSAGGSAKMGRDKEFQAILPLRGKVLNSWEVDRDRLFANNEIHDISVAIGV
DPHGPGDEPDLSGLRYGRICILSDADVDGSHIQVLLLTLFYRHFPKLIEAGNVFVARPPLFRVDVPAQGKRPARKIYCLD
AGELEAAQDKLRKEGVRESAWSVSRFKGLGEMNPEQLWETTMNPDTRRLLPVGYGDLTPGDTTRMFDMLMGKGESSQRRA
WIEEKGNLAELDI
>SEQF2266_AEE66655.1 hypothetical protein BPTD_1255 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQAPDSSVPVRMVVDLTVDDYAAFTAYAYQRPALRRRHASHLRFAVLLAAGLLAVILLRVWDGRQLDWGAALPAYAQAL
AVGLAVFALLAAGYEYALPRLARGNVRRALGRQPDNPFLGRHTLDFGPRGVDDAAAGASGTMPWEAVGQVEETASHLYLF
ISPLQGVIIPKRGQSADVLQAVRAQLRAHVPGAVLADAADKQ
>SEQF2266_AEE66656.1 DNA topoisomerase IV subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDSNQPGLFDGGATDPHEAITLGRYAEQAYLDYAVSVVRGRALPDVGDGQKPVQRRILYAMQAMGLAAGAKPVKSARVV
GDVLGKYHPHGDQAAYDAMVRMAQDFSLRYPLIDGHGNFGSRDGDNAAAMRYTEARLTPFSKLLLDELEEGTVDFVPNYD
GSQQEPAMLPARLPVMLLNGASGIAVGMATEIPSHNLREVAQACVALIRNPKLPQEELLALVPGPDFAGGGQIITPAADI
AQIYATGRGSLKARARWQFEEMARGQWQLVVTELPPGTSGQKVLEEIEEITNPKVRAGKKSLSAEQQQAKAVMLSLLDAV
RDESGKDAAVRLVFEPKTSRVDRDEFVNTLLAQTSMESNVPVNVVCIGTDGRPRQKSLRDVLEEWVAFRTDTVVRRTRHR
LDKVLDRIHVLEGRMVVYLNVDEVIQTIREAEEPRAALMARFGLTERQAEDILEMRLRQLARLEGIKIEQELAGKREEQL
RLQDLLDNPGSLKRLLIKEIEGDAKQYGDDRRTLIETAERAVLETKVVDEPVTVIVSQKGWLRARQGHGHDAGQFSFKQG
DDLYGAFECRTTDTLIAVGDNGRVYSVAVSGLPSARGDGQPVTTMIDLEAGTRIVHTIAAAPDSRWLLATRRGFGFAARL
SDMSSRQRAGKQFITLEKGDELLRPVPLFEGATQLALLSAKGKFLVFDLDEVKSLSGGGRGTILMGLDTADKLDQTVPIG
AAGLRAAGIYRNKQTEDILAGAALAPYVGKRARKGRQLNVRPRQPVLSPVF
>SEQF2266_AEE66657.1 hypothetical protein BPTD_1257 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDGTAAQRLAHLDALRGFALFGILVVNIGVFASVYYGTGLPDPAFSRPLDQWVNVLVAVLFESKFYLLFSFLFGYSFTL
QIDAAQRAGAAFAPRFLRRLAGLAVLGLAHAVLLYHGDILLTYAVLGALLLALRRTAPERALRWACWLALLAGLGWLALG
VLSLMTPQDPATLALTQEDALAALQAYRGTIGTTIARHIHDLTHGVWMVVLLVQGPFVLAMFLAGLALGRRHALADPLAH
PRLLRAVLAVGLPLGAAGAAVYAWSGLPGQPLGIDLIGLGAGMLTAPLLSASYAAALLLAMRRPAGARLARWLAPAGRMA
LTNYLLQSLVCAVLFTAWGLRWVGTLAPLSVLGLAVLVFALQLPWSAWWLRRHAYGPVEWLLRALTLARWPAWRIEPPPP
AARR
>SEQF2266_AEE66658.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66659.1 putative glutathione S-transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTYELIGSRGCGSAIVEMALALANVPYTLTDLPYLKPGPGRDRLLSLNVTGQVPTLVLPDGEVMTESAAIVMHLHDVAP
AAGLAPPPGSAERARFWNTLVRLVAVVYATFTYGDDPAKWTLPGDAAELLRTRVHDRRAQLWQEIERGAGAPHVLGRRFS
ALDLYVVVMTRWRPGPPWFQSVCPRLAAAARRAAEESNVAQVLRRHFDPPLE
>SEQF2266_AEE66660.1 high-affinity branched-chain amino acid transport, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKLENIHTYYGAIQALNGVSVEVKQGEIVTLIGANGAGKTTLLMTVCGNPRAREGVITFEGKDITHAETHHIMRSGIAI
SPEGRRVFKDLTVAENLMMGGFFSRREEVDAGLEHVYTLFPRLKERAGQRAGTMSGGEQQMLAIGRALMTQPRLLLLDEP
TLGLAPLIIAQIFDIIRTIREQGVTVFLVEQNANKALQVADRGYVLENGRVVLHDTGANLLVNGQVRKAYLGG
>SEQF2266_AEE66661.1 leucine/isoleucine/valine transporter ATP-binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSETLLKVSGLTMRFGGLLAVDSVAFEVRRDEVFAIIGPNGAGKTTVFNCVGGFYKPTAGEIVMDGKPITGMPSHKVARH
GLVRTFQNVRLFKQLTVLENLLVAQHTQVEARLLPGLLKLKSYRQAEAEALTRAAQWLDFMGLREFANREAGNLAYGHQR
RLEIARCMITKPRLLMLDEPAAGLNPQEKRDLQSLIDQLRREFGVAVLLIEHDMSLIMGISDRILVMEHGKPITTGIPDE
VRNDPRVIKAYLGEE
>SEQF2266_AEE66662.1 leucine/isoleucine/valine transporter permease subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQQSPLKNATIAAVMTAVIVTPIFGLQLVRQGARTLMEPRWDLVALACALVFAFQLLRPWISKPFKALKTGLPTLPSAL
ARGHKWLVVLLIAVSVIWPFFSGRSSVDIATLVLIYVMLGLGLNIVVGFAGLLDLGFVGFYAVGAYTYALLYHWGGWSFW
EALPFSGAVAALFGFVLGFPVLRLRGDYLAIVTLGFGEIIRLLLINLNMLTGGPDGISGLPKPSVLGMEMARRASTEGGQ
TFHEIMGWTFQNQHMVIYLYLMALALALATLFVSTRLIRMPVGRAWEALREDEIACRSLGLNPTRIKLSAFTLGAMFAGF
GGAFFAARQGMVNPESFTFIESALILAIVVLGGMGSQIGVILAAILLTVLPELAREFAEYRMLMFGLVMVLMMMWRPQGL
LPMKRPHVELRK
>SEQF2266_AEE66663.1 high-affinity branched-chain amino acid transport system, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDLIPQLTQQFFNGLSLGAIYALIAIGYTMVYGIIGMINFAHGEIYMIGAYVGLVTLTAIGTNSGLPLPFIIAAMLVVA
IFVTGVYGYSVERVAYRPVRGSPRLVALISAIGMSIFLQNWVALGQGARDMAVPALVSGAVQFHMGSSFDVTVPYSRIMI
IVVTVVLMVALTLFIKYSRMGRASRACSQDMHMANLLGIDTNRVISFTFVLGAMLAAVGGVLIAITIGKLNPFIGFLAGI
KAFTAAVLGGIGSIPGAMLGGVLLGLAETFAAAYISSQYKDIVAFALLVLILLFRPTGLLGKPEVEKV
>SEQF2266_AEE66664.1 leu/Ile/val-binding protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFSQRFTPLAVALGALAFAGAVHAADTIKIGIPQPMTGPNTQYGDQIQAGALTAIETINAKGGVKGKKLEPILIDDGCE
PKQAVPAANRVVNSGAKFAVAHACSGVTVAAVNVYEQEGIVAITPGATSSLVTDTIKPHFFFRTIGRDDQQGPFAARYIA
NTIKPKKVAVLHDKQTYGSGVATQVKDTLERNKVNVALFEGINVGDSDYSAIITKLKSAGVDFVYFGGYHPELGLLLRQA
REQGLNVQFMGPEGTANQDLVAIAGPAIDGLLVTLPSDFTKLPGNEGVVKAFQDAKRDPDGAFQMPAYAAVQLLAESINA
VGEDPAKVADHLHKNTFNTAIGKVEYDAKGDLKDFEFAVFKWDKNGKKTQL
>SEQF2266_AEE66665.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE66666.1 hypothetical protein BPTD_1269 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSASRRYEPLRSGPFLLAVFCMGLVVVGSNILVQVPLNDWLTWGGLSYPVAFLVTDVLNRRYGPDAARRVAWFGFAAAL
AVSVWVASPRIALASGLAYLCAQLIDIRVFDRLRDQRWWRAPLISGVIGAVADTAVFFSVAFAGSDTPWVTWMLGDLAIK
LAVNISMLALFRALMWNLARPAEARPAQASTGR
>SEQF2266_AEE66667.1 pyrroline-5-carboxylate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNDLSIAFIGGGNMAAALASGLAGKVCPAANIHVVDINADSHAGWRARGMSAAAAPDATLAGCRVWVYAVKPQHMREAV
AGTRPWLRPDTLIVSVAAGIRADTLAGWLGEPGQPWQRLVRCMPNTPALVGAGMTGLAALPGVTPQDRELAGQLLTSVGE
VVWVDGDAGLDAVTALSGSGPAYVFLFIEALIAGGRAVGLTDEQARQLALGTLAGATRLAAQSDEPPAVLRERVTSKGGT
TAAALDVYAQGDFAGLVERAMQAAARRSRELAEEFGR
>SEQF2266_AEE66668.1 glycerol-3-phosphate-binding periplasmic protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSQRLALTFAAVMAAFAGASAHAATEIQFWHSMEGALGDRVNGLVEEFNKQNADYQIKAVYKGNYGESMNAGIAAFRAG
NAPDILQVFEVGTATMMYAKGAIKPVQQMSEEVGDPIDPKQFIGAVAGYYSSPEGKLVSMPFNSSTVVFYYNKDAFKKAG
LDADKPPKTWEELAAVGQKLKAAGQECGYTTSWPSWVQLETFSAWHNVPYATKDNGFAGLDARLAVDTPLHVRHLDNLAK
LAKEGIFMYGGRGDEPNSLFISGKCAMITGSSGLRANIAKNAKFEFGTSTLPYYSDVQGAPQNTIIGGASLWVFANKKPE
TYKGVTKFFKFLASPEIAARWHQQTGYVPVTKAAYELTQKQGFYDKNPGTDVGVKQLNVETTAQSRGLRLGYLPQIREIE
DAEIERIVAGKVPAKDGLQSIVKRGNELLEKFEKSVK
>SEQF2266_AEE66669.1 sn-glycerol-3-phosphate transport system, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEKRVVFGHKTLPYLLLAPQIIITIVFFFLPAGQAMWQSLRLEDAFGLSSEFVGLANFADLFSQQSYLDSFRVTAVFSAL
VAFVGLAVSLLLAVMADRVLRGAGLYKTLLIWPYAVAPAVVGVLWLFLFSPSVGILAVALNGMGVNWNPRLDGDQALILV
LIAAVWKQISYNFLFFLAGLQSIPRSLIEAAAIDGASPARRFWTIVFPLLSPTTFFLLVVNIIYAFFDTFAVIDTTTQGG
PGTATSILVYKVYSDGFRGLDLGSSAAQSVVLMAIVVALTVLQFRYIDRKVQY
>SEQF2266_AEE66670.1 sn-glycerol-3-phosphate transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVERRPWLDILAHFILLCGVALVAFPIYVTFVASTQTAQEVASAPMSLIPGKHFVDNYMQALFAGSGGGSYGAPVGRMMY
VSLIMALAISLGKIAISLLSAFAVVYFRFPGRMFFFWMIFVTLMLPVEVRIAPTYKVVADLGLLNSYAGLTLPLIASATA
TFLFRQFFLTVPDELVEAARIDGAGPMRFFRDVLLPLSRTSIAALFVIQFIYGWNQYLWPLLITTQEDMYPVVIGIKRMI
SGGDSVTEWNITMATAILAMIPPALVVILMQKWFVKGLVDTEK
>SEQF2266_AEE66671.1 glycerol-3-phosphate transporter ATP-binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATLSFRNVKKTYAGNVPVIHGIDMDVADGEFIVIVGPSGCGKSTLMRMVAGLETVTEGEILIDDKVVNTLEPAERDIAM
VFQNYALYPHMSVFDNMAYGLKIRRLPKDEIRKRVEAAAQILELGKLLDRRPRALSGGQRQRVAMGRAIVREPKVFLFDE
PLSNLDAKLRVAMRLEILKLHRRLNTTSLYVTHDQVEAMTLAHRMVVMYQGVPEQIGTPMEVFEKPASTFVAGFIGSPPM
NLLEVAVGGDGIVHTSDGIALDISPLAVPQQVRGRKVVMGLRPEHMLLNAQGLAAEIEMVETLGSEQLVHGRCGKHMVVV
RCSTRQFSETPARVGDTLTIGPDGRHPLHWFEADTGRRVEGL
>SEQF2266_AEE66672.1 leu/Ile/val-binding protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKAFRFTPVIAALGMAAGIAMSAGAHAQTIKIAVVGPTTGQVTQYGDMVREGVDTAIERINATGGVNGKKLEAVVIDDG
CEPKQGPVAANRVVNDKIGFVVGHVCSGATIAATEIYNNEGVVMVTPSATSPAVTDGKNYEFIFRTIGRDDQQGPAAAKF
ILEKIKPKTVAVIHDKQSYGQGIATAVKDTLEKNGTKVVIFEGINAGDSDYSAVITKLKAAKVDFVYYGGYHPEMGLLLR
QGAEQGLDAKFMGPEGVGNPDINAIAGPAVEGMLLTLPADFTLNPVNAEIVKAFKDKKRDASGAFQLTAYAATQVIADGI
KGAGSEDPTKVAQYLHANSFQTPIGKTSWNKQGDLNAFEFEVFTWHKDGSKTSYK
>SEQF2266_AEE66673.1 hypothetical protein BPTD_1276 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLQPIIVPGWQGSGPGHWQTHWSRTLPHAVRLQQRDWHQPQRAEWVAALAAAVDAAPTPVLLVAHSLGCLVSAALPIAL
RAKVAGALLVAPADVERPGAPAAIAAFGPVPRQSLPYQSVVIASDDDPYCRLERARQFAQDWGSRLVVLQGAGHINADSQ
LGAWPQGLKQLAALRRRACWRISPPAEKIPPVPAGIMAPPRYG
>SEQF2266_AEE66674.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66675.1 hypothetical protein BPTD_1279 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDRQLIVLAALNIMVAVGAGAFGAHGLRRVVDPTLLAIWHTGVLYHLIHALGLFVVALLGARFGSPLLSMAGLVMFIGI
LLFCGSLYVLVLTGTRWLGAVTPLGGVAFLAAWAMVAWAAWRAPA
>SEQF2266_AEE66676.1 hypothetical protein BPTD_1280 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIAIAEKSPARGAPKRRAPAARKRALEEEARVDSFADLVDSPLIAMAHGVQRGLSPRLLDDAADYLQVPKSEIMAITEV
KAASLSRWMRDGQALPLGESDRLARVARVTKVARQVLGGDAEAVQWLNTPVPALGNVKPLSLLTSDASSRIVEDTLARAA
AGVYA
>SEQF2266_AEE66677.1 hypothetical protein BPTD_1281 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHVSLWRIATTAGKYRADDLSGAGAGAAAVGGRYNSPGTAVVYASSCVALAVLETVVHFAAPATAQANRYLIEIVVPRA
VYEARQVLEVDALHKRHPFWDAVPFAEVSQRIGDAWVRGNGSALLQLPSAIVPCRGVPDCNLLINPQHPDAASVRVARRE
KFIYDPRLAPGGPRQ
>SEQF2266_AEE66678.1 hypothetical protein BPTD_1282 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIRSGWMQWLGALALWCAAAGAGAAQQAPLRIGVIASVANEATEIAIAQARAQGLEVKLIEFNDWVMPNIAAAEGSIDA
NFFQHEPFLQLFNRSRGTHLTPIAYGYSTTIGLFSKKLKKGDAIPQGATIAVPNDPVNTGRALQLLASIGLIGLKPGAGH
QATLQDVTDNPRRIKLVQLEGSQSARTFDDVTASVTYTTFAKHAGIDEKDGLAFDNTDPETVRRYAIRWVATPERAQDPR
LLAFIRIYQSSPEVKATLRRLYGELIDFPWE
>SEQF2266_AEE66679.1 putative L-lactate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPGHRRRFWSSHVVFRTAPVRRLRRPRRRLPRPIFGYVAGAAEDNQAHDDNRRAFAEYGFLPRVLVDVSARHTRTELFG
QEWAAPFGVAPMGISALSAYRGDIVLARAARAAGIPAIMSGSSLIPLEEVARQAPGTWFQAYLPGDPGRIDALVERVARA
GYWTLVLTVDIPVSANRENNVRTGFSTPLKPGLRLAWDGLSRPRWLAGTFLRTLLAHGMPHFENSFATRGAPILSANVLR
DFSARDHLDWSHVQRIRRSWRGELVIKGIMHPRDAALARAHGADGIIVSNHGGRQLDGACAPLRVLPDIAEAAGAMAVMM
DSGIRRGGDVLKALALGARFVFLGRPFNYAAAVGGEAGVAHAIGLLREEIDRNMAMLGVTRCTAMAPGLLRRL
>SEQF2266_AEE66680.1 phosphatidylserine decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPFKDQLFLASQYLAPHHLVSRLMGRVADCRAPEIKNRMIARFVRRYNVDMSEALVEDPLAYASFNDFFTRALKPDARPL
DDEPGAALCPADGAISQIGAIDNGRIFQAKGHSFGLTDLLGGDAERAAPFAGGQFATIYLSPRDYHRVHMPLAGTLREMV
HVPGRLFSVNPLTARSVPELFARNERVACLFDTEHGPMALVLVGAMIVASIETVWAGLVTPHKRQVRSVRYDAAARAPIH
LDKGAEMGRFKLGSTVIVLFGPKRLRWLDLPSVRGPVRMGETLALPASTAISFPESE
>SEQF2266_AEE66681.1 hypothetical protein BPTD_1285 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTESARPTPATILLYTEEQRGNQWVESIVVGMLSDISGADKLVVIKDPHSGIKFVYRVEHDCNNLDAAAITELDETHFDG
KRTTAINGMNYRMGNPDSAMKLLRAKPRWIQDKGAVLSVLLRNAAARSTSFVSRRIDRERLTRVPADAPVERLPQP
>SEQF2266_AEE66682.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKYRATALPPPRLKLLCAAGALALLAACGSAPPADITLAGAAPAAAGAEPATIGDVRTERIQWASAKPGCTGECPRVEID
SVSFPGIPALSELVDRQLAAMTGVDQNLRGRYQTLSEYTQYFWKTAQARDATYFKASVKDVVGDIVAVELGTTQFLTGAA
HGIPATHYLNWQRSQGRPLTLDEVLIPSRKAEYVVAMREAHQRWLAANEDAQHDRAAYDRMWPFQETTNFALTRQGLVVK
YDAYTIAPYSHGQPEILIPYERLRGVLRPEFIPAG
>SEQF2266_AEE66683.1 putative lipoate-protein ligase A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRTAWTDYDWQLIHPGPLPPALHMALDAAITDEVGAGQRPPTLRIWEWSQPAVIIGRFQSLRNEVDPDGARRHGVTVVR
RVSGGGAMFVEPGNTITYSLSVPQALVAGMSFQESYAFLDAWVIRALHELGIKAWYQPLNDIASDAGKIGGAAQARRAGA
VLHHVTMSYDIDADKMVEVLRIGREKLSDKGTTSARKRVDPLRSQTGLARDTIIERMLQTFAGMCRLTPAEIGAATLQAA
QRQAEEKFSSPEWTALVP
>SEQF2266_AEE66684.1 hypothetical protein BPTD_1288 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKGIPAMHGEYKVPGGKLVVIDLEVAQGRLRQVRLSGDFFLEPPEALEAINRGLDGLPADAGAEGIAQAVRAALPAEAEL
FGFSPEAVAVVVQRALS
>SEQF2266_AEE66685.1 putative acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTATLSFRRAAATDLPAIIALLADDAFGQQREDPTMPPQPAYLAAFGAIDRDPNQLLAVVERAGQIIGCLQLSFIPGLSR
RGLWRGQIESVRVAASERGAGTGRALFEWAIAQCRDKGCGLVQLTTDKQRADARRFYESLGFKATHEGMKLDLA
>SEQF2266_AEE66686.1 putative glutathione transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDLYYWTTPNGHKITLFLEETGLPYRIHPVNISKGEQFQPEFLAIAPNNRIPAIVDQAPADGGTPIPLFESGAILLYLA
EKTGQFIPADLRGRADVLQWLFWQMGGLGPMAGQNHHFSAYAPERIPYAIERYVKETNRLYGVLDRQLAQREFVAGDYSI
ADMAAYPWIVPHERQGQDLNEFPNLKRWFEAIGARPATQRAYALADRINTKPSVDTEESRRVLFGQTAANVRR
>SEQF2266_AEE66687.1 glutathione peroxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTMYDFSAPTITGAERALADFRGQVALVVNVASRCGFTPQYSGLEELYRSYRNEGFVVLGFPCNQFGRQEPGDEAAIAQ
FCETQYAISFPLFAKIDVNGAHAHPLYRWLKARKPGLLGTRAIKWNFTKFLVGRDGLPLRRYAPAHTPESLRHDIARACA
APGPTP
>SEQF2266_AEE66688.1 hypothetical protein BPTD_1292 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHRRQLLKLAAAAPLTLYGTRLLAAGPPDTRLLVVFMRGAYDAASLLVPTTSEFYYESRPHIAIARDAAAALSDGWALHP
AVKDSLLPFYQRGELAFVPFAGTDDASRSHFETQNRIELGRAGGSGAAPASGFLNRLAAQLDGKAGRPAAFTEDVPQIFR
GQARVPNIDLGGAKRKSRLTADSSSAIAQMYQGTGLDASVNEGLAAMGQARAALEAEMREANGGAGNTEKLEQEARRIGT
FMAERYNLGFVDVGGWDTHVGQGAANGVLATKLGQLGRALAAYAQAMGPAWRHTTVVVISEFGRTLRENGNKGTDHGHGS
VYWVLGGGVRGGRIAGEQVAVKRDTLFQDRDYPVLTDYRALFAGLFGRLYGLDAQRLQAVFPGARPLDLKLV
>SEQF2266_AEE66689.1 hypothetical protein BPTD_1294 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAMTERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL
AAAQSRGDQQVVKELQVFLRRLAREDAQHGG
>SEQF2266_AEE66690.1 hypothetical protein BPTD_1295 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGNLKDLHPPVARGQAHTAKGARVALQNLWGAAGLPDEALDHVELHGAEPVLPSSFAVGTAAQASIAAAALAAAEIWHLR
GGQRQRVAVDMRHAAQECRSYFKINGVTPNIWDKITGVYPCGDGGWVRIHANFPHHRDGALALLGCPPGEAATREMVERA
LARWRAGDFEQVAADAGMVVAAMRSFDQWDRHPQGLATASQPVVRIERIDNADPRPLPKYGHEATPLQDIRVLDLTRIIA
GPVCGRALAAYGADVMLINLPHLPNIDNIIDTSRGKLSVHADLETADGRIALGNLLRSAHVFVQGYRPGGLQALGFGPED
AARIRPGIVYVSLSAYGDSGPWAGRRGFDSLVQTATGFNHAEAQAAGQEAPKAMPVQILDHASGYLMAFGALAALARQRI
EGGSWHVRVSLASTARWLRELGRVPDGLACPMPPIEELLYAEESGFGELTAVRHAAQFSLTPARWTRPAMPPGSHPTVWP
FR
>SEQF2266_AEE66691.1 putative arsenate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFHRGVCMSATIYHNPRCSTSRNVLQMLRDAGIEPTIIEYLKTPPSRQTLAGLIQQSGLSVREAVRAKEPIYQELGLDGV
DDEGLLDAMVDNPILINRPFVITERGARLCRPAESVREILP
>SEQF2266_AEE66692.1 putative bacterioferritin comigratory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRPALLLAALLSIAAPAAHAALPVGAPAPDFSAQASQGGNTFTFELAQALRQGPVVLYFYPAAFTQGCTIEARNFAEAI
DQYRALGATVIGVSGDDIETLRKFSVSECRGKFPVAADADGAIMKAYDAVHDRRPEYAQRISYVISPQGRIVYEFTDMSP
DRHVANTLQALRDWQARKK
>SEQF2266_AEE66693.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66694.1 hypothetical protein BPTD_1300 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIKSDDAGKLILRLALGILVIMHGLAKLSSGVGGIAGMLSSHGLPGFLAYFAYVGEIVGPLLIILGIYCRLGALLVVLNM
VVAILLAHMGQLFSISNTGGWALKLQGMFLFGALALAFMGAGRFSLAGSGGRWN
>SEQF2266_AEE66695.1 hypothetical protein BPTD_1302 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIALPSLEQAAEVRVSRQGGVAFVLALVRTRRFELGACSATLRAQIDAALHSAAGQARDACGQGDQRYFRVEVHFGAGSR
AEPLRFDVPEELAPHDLVWLWRSAPAR
>SEQF2266_AEE66696.1 hypothetical protein BPTD_1303 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRARFLRLAGAAALGLAAPRVPAAPSLLTRPVPADGSPLPVIGCGTYIGFDVARPSAEYDALGEVVRTLFAAGGTVLDS
SPMYGRAEAVTGRLLAEAGLRQRAFVATKVWTSGRAAGLAQMQASLRQLGGERIDLMQIHNLLDWRTHLPVLREWQAAGR
IRYVGISHYTASAYDEVEAVLRAERLDFLQINYALDDRQAAQRLLPLAADRGVAVLVNRPFGGGGLLRRLAGRPLPSWAA
DIGATSWAQVLLKFVLSHPAVTCAIPGTGRAAHMRDNLAAGMAAPPPLSFWNDKA
>SEQF2266_AEE66697.1 universal stress family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKILVPVDGSECAVRAVREAIKVANDSKGAQLHLLNVQLPLISGHAKMFLRHNELQSYYQAEGEAALATVLPVVAESGI
PFESEMRTGQYGETIANYAKEKQCDRIVMGTRGLGAVGGLLLGSVARKVIHLADVPITLVK
>SEQF2266_AEE66698.1 hypothetical protein BPTD_1306 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRLFSERPQMSRTSLSSLAPRPHRLLSLAWAATVLSLRVGMGISGLFCAWRYLVDLRPVRPLFDGVAAGATPLALYAAF
EAGCAVLLMAGASTRIAAAGMTAAHIAGVALALPAHGLWIPLPSALWLACLALLWCHGPGPCSVDACLHPAAIAPLSPPP
DDPAQRPI
>SEQF2266_AEE66699.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSITGASAAEIFDSVRQLAQARRLLPGQALPPVRELAQTLGVNRNTVAAAYKRLVGAGLALSQGRRGTIIRAPSEPGEQD
GAHPGSPLIDLASGNPDPARLPDPLAIMAGRASPPRLYGEATVDPRLQAYASQWYAGDCPAAFEVDLTHGAIDAIERLLG
ANLAAGDTVAVEAPGFLGSINALRALGLRAEGVALDAAGMLPDALERALADGAQAVLLTPRAQNPTGASLTRARARALRQ
VLQRYPHVMVIADDHFAHLSASPYHSPIPAAALRWALVRSVSKALGPDLRLAFVASDPDTSRRLRLRLASGTTWVSHLLQ
DVVAGCLASAPVQARMAQARRAYAQRRAWLADALRAEGIAAQWPADGLNLWVPLAQDSPALLLELAHRGWRLRNGRSFGV
REDVHGLRITIATLEHATARRLARDLRLCLDARDGLKKYPMLL
>SEQF2266_AEE66700.1 hypothetical protein BPTD_1308 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHADTAQDAPDAAARYPRADSVADFEHNLAAVRARMAAACQRAGRDPAGVRLLPVSKTVDEARIRMSYAAGCRELGENKV
QEAYRKWEAMADLADLRWSVIGHLQTNKAKLVARFAAEFQALDSVRLAEALERRLQAEGRALDVYVQVNTSGEASKYGLH
PDEAAAFIRQLPSYGALRVRGLMTLAVLSADAARVRQCFVLLRTLRDRLRQEAPAGVSLDELSMGMSGDYEIAIEEGATV
VRVGQAIYGARALPNDYYWPDSGAADRAEDE
>SEQF2266_AEE66701.1 pyridoxal kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKLAAPNPQALAPLPIDVVSIQSQVVYGQVGNSVAVPVFNGFGLRVAAVPTVVLSNTPHYPSMHGGAVPLDWFEGYLAD
LGARGALAGVRVVQLGYLGGPAQAEALGRWIAGLVAERPDLRVHIDPVIGDHDSGVYVAPGMVAAYRDHLLSLAQGLTPN
GFELECLTGLPTGTMEQTIAAARTLLGGRARWVIVTSAAPATWPPGRVRVAVVTHDDAQVLEHAHVDTAPKGTGDMFGAA
LTGHRLAGQPVAEAARRAALQVIEALERTREAGCGELLLAGPLR
>SEQF2266_AEE66702.1 alpha amylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRATVRLQLHAGFTLDAAGAQLDYYDALGISHLYLSPVARARCGSTHGYDVIDHAQVNPELGGLAALRRLAGAARARGM
GLILDIVPNHMAAHPDNRWWREVLRDGPASAYADWFDIDWRPPGRTLRGRVLLPVLTCGARAALASGEIGLRAGSDGTPA
LHANGLDLPLAPASLPMAALLLHHGGTPAQWHALLRAQAYRLAWWRSAAQAINWRRFFEIGDLVGVRVERPEVFDAVHAL
PLALYRAGLIDGLRIDHVDGLAEPGAYCRRLRAELAQAGQARAARGLSAEPYVVVEKILGDKETLRTDWPVQGTTGYDFM
NEASAWLHDARGAAPLAAFWRDNAGTWPHWREQLRRIRLRLLRRHFGAERRALARSLADLPELRASAAAIDPVLTQWLAC
FPVYRTYAEGGAGQAADQAWRQTAQTRANAHLDPAQQALLAALCLALDGRMADAPHRLALRRLQQLTPPLAAKALEDTWF
YRDGTLLSRNEVGPAPAQFALGGGALRRSVAARARRHPQALLATASHDHKRGEDVRARLAVLSEMPQQWCDWARQWLADA
GGSAAPPAWADRYMLLQTLVGAWPADLAPDDQAGMAALLRRVAAWQAKALREARQRSSWTCPDLAYETLCARYLRALADD
GAALPAVAALARRLAPAGLVNSLAQTALRLGLPGVPDLYQGCETWDLSLVDPDNRRAVDYAARRGALASLGNGALALPEL
WRDGRAKQALVARALQWRREQPALFEHGACRWLRVSGARARHVLACLRTRGPQQALIVVPRASALALAGQTGPDRDAAAH
WRDTCVHLPADAPPWRDILTHAGHQGRALALSELLARWPVALCRVQS
>SEQF2266_AEE66703.1 alpha amylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNEPAPLGATVCAPGKIRFRLWAPSAPPALALEIEGRAPIALRPGPDGYAQAIVDGAPGLRYRYRLAADCVVPDPASRLQ
DGDVHGHSVVVGPDRYPWRHTGWRGRPWQDSVIYEAHAGLCGGYAGLRRRLPEVARLGVTLLELMPIADFPGPRNWGYDG
VLPYAPDTAYGTPDELKALIDAAHGLEMGVMLDVVYNHFGPDGNYLHRYAADFFDARADTPWGAAIDYRQQAVQRYFIDN
ALYWLRKYRFDGLRLDAVHAMGRTDWLAGLAREARAACPDRRVHLVVENDANQASLLEQGFDAQWNDDAHHVLHHLLTGE
RQGYYADYAQAPAALLARALGEGYVYQGQAAPTRGGRARGEPSAHLPPWAFVLFLHNHDQVGNRADGLRLTSLLAPGSPA
LRAAIALQLLAPHIPLLFMGEEYGSTAPFFYFTSHGPELAAAVRAGRAREFAASMHDCDPPPDPNDPDTYRRSCPWPPPG
AERQAWFEYYRELLRLRARLLGERLTGARADGAAALGPAAVRAAWRLGDGARLTLYANLLPGSVIVPAPPAGQLAYATLA
GAGQDLVAGVLRGGCALALWEPAP
>SEQF2266_AEE66704.1 glycosyl hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYPSLPDRLLPGLPAPLGATSDGLGVNFAVFSANAARIELCLFDARGRKELARLPMPECTDEVWHGYLPDAQPGLVYGYR
AHGPYNPRAGHRFNPHKLLLDPYATALTGALRWSDALFGYRMQHPRADLSMDRRDSAAGVPKAVVTEPAFHWGATRRPAA
AWAHTVIYEAHVRGVSMLRSDLREPIRGTCAALSDPRFIDHLHRLGVTALELMPVHAFLQDRTLVERGLRNYWGYNTLAY
FAPEPAYLADGQPHDLRRAIRRLHAAGIEVILDVVYNHTCEGNELGPTLSWRGLDNASYYRLVPGDERRYIDDTGTGNTL
NLSHPRVLQMVMDSLRHWAVHYRVDGFRFDLGVTLGREGTGFDAGSGFFDALLQDPVLARVKLISEPWDVGPDGYQLGRH
PPGMAEWNDQFRDTARRFWRGDAGMAGALATRLTASRDVFDHRHRRPWSSINFAAAHDGFTLQDVVSFAERHNEANGEDG
ADGHGENYSSNWGVEGAASSAAIRETRARVQRALLATVMLADGTPMLLAGDEFGNSQGGNNNAYCQDGPMGWLDWAVAQS
TPGRALTAYAARLAGLRRAHPSLRATRYGDPAHQWQEGLGAIDWFNGRGAPMTSADWDAPEGRLLVLRRALPDPAQPGRV
DVTLLLCNAAAEPRPCVLPAPTLAWTLALDSASPEAPAAPCDGGEAIVGARAVLLLTASVDGAHAP
>SEQF2266_AEE66705.1 glycogen branching enzyme [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMRDSPSIQGTLDAATQHALLAGRHADPFSVLGPHQAGAHTVVRVLAPGARTVMAVLPGGQRTPLLPMQPGLFENTVPGL
QPGAPAAYRLCIEWEGGIQHTADPYAFGPVLDAAQLDHCAAGGWRYLAGLLGAHAASVDGCAGTRFALWAPNARRVAVVG
DFNGWDGRRHAMRLRYPAGVWELFLPDVGPGARYKFQVLGADGHTVLKADPLARQAEAPPATASIVPDERPFAWTDKAWM
EQRAARQRCDAPISIYEVHAGSWFDDAGAPRWQNLAARLPEYARSLGFTHIELLPVMAHPFGGSWGYQPLGLFAPAAAHG
APADFAHFVDRCHEAGLGVILDWVPAHFPDDAHGLARLDGTPLYEHADPREGRHPDWNTLIYNYGRREVRTFLIASAIHW
LRHYHVDGLRVDAVASMLYRDYSRPAGQWIPNRHGRRENLEAIDFLRELNAAVGVQCPGAITVAEESTAWPGVTAPVANG
GLGFDYKWNMGWMHDTLRYMRRDPIHRRHHHHDLSFGMVYAYAERFVLPLSHDEVVHGKGSLLGKMPGERAAQLAQLRLY
YAFMWAHPGKKLLFMGGEFGQQGEWNHDAMLQWSLLDDPAHRGLQRLVADLNHVYATLPELHCRDADPSGFAWIVGDDAD
NSVLAFARVDASHCLVAVCNFTPVPRPGYRFGVPHAGDWRVRVDTGATRYGGAGGGPPICLRSEPIPAHGHPQSLVLDLP
GFTALYLRHSE
>SEQF2266_AEE66706.1 alpha-glucosidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPATHPAPDPLWYKDAVIYQLHVKSFFDANDDGVGDFAGLLAKLDYIVELGVNTIWLLPFYPSPRRDDGYDIADYRGVHP
DYGSLADARLLVRAAHARGLRVITELVINHTSDQHPWFQRARAARPGSAHRAYYVWSDDDKAYAGTRIIFCDTEKSNWTW
DPVAGAYFWHRFYSHQPDLNYDNPQVLREVLGAMRYWLDMGVDGLRLDAVPYLVEREGTNNENLPETHAILRRIRRVIDS
EYPGRMLLAEANQWPEDAQEYFGAGDECHMAFHFPLMPRMYMAIAQEDRLPVTDIIRQTPSIAPQCQWAIFLRNHDELTL
EMVTSRERDYLWNVYAAEPRARINLGIRRRLAPLLERDRRRIELMNSLLLSMPGTPVLYYGDELGMGDNIHLGDRDGVRT
PMQWSPDRNGGFSRADPERLPLPLLMGPLYGYEAVNVEAQQRDPHSLLNWTRRMLAKRRQSHVFGRGELSFLYPGNRKIL
AYLRTWEDTVVLCVANLSQAAQPVELHLSEYAGRVPVEMLGGTAFPQIGELPYLLTLPPFGFYWLDLSAGAAPPAWHSEL
PPQMPESITLVSRGAGAALRLTEASRRQLEADVLPAYLQRQRWYAARRKPGVMRLAYSVPLNDDVESYYEAEIEVSDDGP
PRRFHTPVALAWQDDTAAQYPLARVRRGAQLGTLTDASLQPGYARVLLAALTAGRDIQAGGEPAVRLRFLPEPGLADLAL
RDDSEVRALSADQSNSSLLVGERVVFKLLRELHAGPHPEAEMTRYLTQAGYAHTPALLGEVVRVQGDQAPHTLALAHAYV
VNEGDAWNWTVAYLKRTLDAAILTGASADDYQQELAGYEVLAGTIGQRLAQMHSVLARAGELPGFAPRPASERDAALAGE
RAVAQLDRALQALRACESGLAPASHACAQWLFEHRDRLAAHIMTLAQAETGALRIRVHGDFHLGQILVAQTDAYLIDFEG
EPARPMAERRQLSSPFKDVAGILRSFDYAVAELSRDDPLGGAPRDFNTGVAEPADPASAPRETREALLARFRQRAGAALL
ASYGNAIDPVLALPPERAQALTCLYLLEKAAYEICYESAYRPERLPVPIHGLAETARAALLAAAVDHDEGPAP
>SEQF2266_AEE66707.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF2266_AEE66708.1 hypothetical protein BPTD_1320 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPTPTSQDRKQDDDTQREAQRSHGSQQARTKKDGHVSQIGSNQDQSSQRNRGQGARRS
>SEQF2266_AEE66709.1 hypothetical protein BPTD_1321 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFDTQVAGTLLTPRAKLPGVLFVHGWGGNQRFDLSRARDIAGLGCICLTFDLRGHAATEAQRRQVTREDSLRDIMAAYDA
LIAHPAVDTSAIAVVGSSYGGYLAAILTTLRAVRWLALHVPALYRDDEWAQPKLQLDRAAISAYRHATVAPEGNRALSAC
SSFRGDVLIVEAEHDDYIPHSTIMSYRGAFLHSHSLTHRIVDGADHALSDKRCQQAYSSILLNWATEMVVGARVGAGRPA
>SEQF2266_AEE66710.1 hypothetical protein BPTD_1322 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPAAAVPRRPVDLVVAHPGRRDAPRHERASLRALGLDIAELLGCEYADALPAAARDPRLRVYYVPARTLLDGRALALGI
QGPDDLFGGVAPHGFVATKAITHALPHDGCAAPAAWSRELGARLSDCVLPGCTVFALDEARQGGARMLRTSALRVKPVRA
TAGRGQRKVADAAALDQALAEQDAGEVRRYGLVLEEHLEDISTYSVGVAQVGVHLASYIGTQSLTLDHAGLEVYGGSDLW
FVSGPLPALLQLELDAPRRTALEHAMRYDEQAFACYPRLYASRRNYDVARGRDAQGRWRTGVLEQSWRAGGASLAEIAAL
RAFAQGGGLRRAHAATSEHYGPDPAHPPGTRIVFHAHDAEVGFISKAGGMTQDNGTDDDDT
>SEQF2266_AEE66711.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF2266_AEE66712.1 cardiolipin synthase 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTPWRDGNRFAILENGASYFPRVYTAIGKAREEILIETFILFDDAVGRELREALMAAARRGVRIDVTVDGYGSDSLPPD
FIAGLVELGVGFHVFDPRPRLLGMRTNLFRRLHRKIVAIDGTLAYVGGLNFSADHLDDYGPQSKQDYAIEIAGPLAADIR
DFARAALAAVPRRRWRRARPAAPPQAAGPARARLVVRDNDQHTNDIEQSYRVAIRAARRDIVIANAYFFPGYRLLRDLRA
AAARGVRVRLILQGEPDMPIAQLGARLLYDALAEAGVEILEYCERPLHGKVASIDDEWATVGSSNLDPFSLALNLEANVE
VRDSAFASGLRERLERLAIDHCRPAPQSDGAGRQLRRLFAGALVYHFLRRFPAWAGSLPAHKPRIQTLRPDGQGQPDEAT
>SEQF2266_AEE66713.1 hypothetical protein BPTD_1326 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPEPIRLRILTVNAHKGFTSFNRRFILHELREALREARPDLVFLQEVLGEHQRHAARHARWPAVSQYEFLADTLWSAYA
YGRNAVYPDGHHGNAVLSKYPIVSHRNEDLSVGAAHEPRGMLHCVLDVRDAPAPLHALCVHLGLREAHRQEQLRRLCQYL
RQHVPAQAAALLAGDFNDWRQRADATLARCGLADVHRLALGHAARTFPAACPLLRLDRIYVRNVAGSEPRRLSRRPWSRL
SDHVPLAAEVTL
>SEQF2266_AEE66714.1 hypothetical protein BPTD_1328 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHPFHVFAMSAHGGRGGGHAGGRHGGGHGAGGDGPDWRRGRKFSADDLQLMILALLDEGPSHGYELIKALGARSRGFYTP
SPGMVYPTLTWLEEAGHATVSQDGARKHYHLAEPGRAHLQANRERVTLLMAQLAHVGRKMEWMRRAWAGQPIETGSEGED
LATGWLPEYVQARMALKQALARHADATPARQRQLAAILARAAAELDDLSS
>SEQF2266_AEE66715.1 autotransporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSARRRTPARLAPLPAMLAAAGLLQSLGATPAAAACAPTLAPASGQSVQCDGAVVNQSVEAAAGSQNVTITVAPGALFS
TNATRALSVDDRSRIVNEGTIQMAGGAGASRGAMVGFGDNNQLINRGSITTSGSGVRGISVPNVGSTGTLVDNSGSIRTQ
GASAHGIAINGPGNRVQNSGAITVNGTDAKGVYLQGGSPAANVLVNGGTIHARGASSNGIFGPDGVHVNTTNANGFHARV
ENLPGGRILSDHSYALRGQNGNDTFINAGYLQGHGGAGRDTAVYMGPQGTGTLILRTGSAIAGLADGGGAASHAYLEGSG
TVDNRFANFRTLTMRGADWRWTSDAAFTESVDLRTGTFFLAGTLASPANRLAAGAVLAGTGTLAGALRNAGEIRPGPNDG
SGYGALTVRGDYTGAGGALRVNTVLAGDGAASDRLVIDGGHAGGSTPVTVVNRGGQGALTAADGILVVQAINGASSDAGA
FSLAAPLNAGAYEYRLYRGGATGAAPDSWYLRSRAYLVEDQLAGSLAEAEAIADDIGRRTGERPSIEDTPLYRPEVALYS
SIPMLARRMGLAQLGTFHERQGNQALLARDGERVAAWARAYGGNSKQALDGDAQPGIDARLAGVQLGQDLYSSVRPDGGQ
HRFGLFGGYGQARGDTHGSAGGERDAATGRLTIDGYSVGGYWTYVGPRGWYVDAVLANTWMDIDTDSKAGRDADTRGQAF
TASLESGYPLALSERWTLEPQAQLIYQHTRVDGFSDAVSEVRIRDDNALTARLGARLQGEYAAAAQVWRPYAALNFWRTF
SGENTVVLGEDSIDTRRGATSLELAAGASVTLARSLALYGRLAYATSIDSQYLRGASAQLGMRYTW
>SEQF2266_AEE66716.1 hypothetical protein BPTD_1331 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQQLGATRRYAASDLVGFLACEHLTQLDLRALDAGQAPAAADDEQMALVQAKGQAHEQAWLERLRARHPDLADVTRAGPD
LAARLAATRAAMAAGAPVIYQAALCHGPYVGHADFLLRTECPSALGDYGYEALDTKLARSPRASFVLQLSFYAWLLEHAQ
GVAPRSMHVVLGSGRELALRVADYAHYLRQVLRRFEAAIAAEPAPPTYPEPCEHCPQCRWRVACEARRVADDHLSLVAGM
SRQQARRLNAQGVATLAQLGALPEHAQVAGIEAGTLQRLRAQAALQWRARVDGARHYELLAAQDEGPRGLARLPRPDPGD
MFFDMEGDPLEDGGLEYLFGLYVIDDGAERFVPFWAHDRRQEKQAFEAFMDFVAERLRRHPDAHIYHYAPYEATALKKLM
SLHGTREAEVDHLLRAGKLVDLYRVVREGLRISEPSYSIKYVERFYLPRRAGEVTNAGASIVYYERWKATDEPRLLQDIA
DYNRDDVISTWRLRDWLCGIRPAALPWHNEAGQQDLDAARAVIGEMTEAERRLLPYRAALADDLPADEAAWSPRDAFRAL
AWHLLDFHRREQKPAWWAWFARAEATDGELIEDAECLGGLARDDAAPPVRQAQSLRYTYRYPAQETKLRTGARCTDVRTG
ASLANLVVDPHARLASFTCSARKPAPPPRMALGPAAPVNNKELVNAVFRYGDAVCRAPDGMSMPMRAVDALLRREPPRIR
GLARGAPLVAPHAELLPQVLDVVARMDETTLFLQGPPGAGKTYTGSRVLLQLLRAGRRVAVSSNSHHAINNLLRGLERLA
EREGFALRGAKKSTSAGDDSCLGGAQIEDVFDNKDVDPARHQLVAGTAWLFARPEFEQAFDYLFVDEAGQVSLANLVAMG
QCARNIVLLGDQMQLGQPSQGTHPGRSGESALDYLLDGQATIAASQGVFLDTSYRMHPEICGFISEAIYDGRLRAAPATA
AHRLLLDEAAGRELPAHGIRYVPVPHDGNTQSSREEAARVAELCALLLRQRHVDEAGAPAPLTLDDILFVAPYNVQVNTL
RAALPDGARVGTVDKFQGQEAQVVIVSMATSSGDYLPRDLEFLFSRNRLNVAISRARTLAILVASPALTAVRCRSAEQMA
LVNTLCWVAETGSASPYQV
>SEQF2266_AEE66717.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQDLNDLYYFVQTVDHRGFAPAGRALGMPKSKLSRRIAVLEERLGVRLIQRSTRHFSVTDIGQTYYEHCKAMLVEAEAAQ
EAIDAAQVEPRGVVRLSCPVALLHTHVGAMLGEFMLRYPRVTLHLDASNRRVDVLGEGVDVAIRVRPPPLENSDLVMRPF
ADRGQCLVASPALLARHGAPALPADLAAWPRLALGLPNQPHSWLLTGPQGAQATVPLAPRMVTTDMLALRSAAVAGVGVV
QLPSMMVRGQLADGTLVRLLPEWAPCRELIHAVFPSRRGLLSSVRTLVDFLAERFAALQEG
>SEQF2266_AEE66718.1 putative reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARLHIIICSTRPGRVGPAVADWFHAQALAHGGFEVALVDLAQVGLPLYDEPRHPMLQQYEHAHTRAWSRSVASADAFVF
VTPEYNYGPPPALVNALNYVYKEWNYKPAAFVSYGGVSGGMRAVQAEKQTLTTLRMVPIFEYVAIPMVAERLDAAGRFQP
QPIHDSMAQGLLTELRRFSDALQVLREPASTP
>SEQF2266_AEE66719.1 putative citrate lyase beta chain [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIPDPATAPSMNPTQTTNPMRPFRSVLYTPGANARALARARELDADALILDLEDAVAVSAKEEARVQVTHALREGGFGRR
SVIVRVNGLDTPWGEDDVRALAPLGPHAMLLPKVEHPAQLARAAALAAEAGAPGLAWWAMIETPLAILNIGAIAAAGAPL
RALVAGTSDLVKALHARHTPARAEVQAALSMTVLAARAHGLLALDGVHLDLADAEGLRHACRQGRDLGFDGKTLIHPRQI
DSANAAFGPSEAEVVRAHAIMAAWQDAQAHGAGVTVVDGMLVEALHVEDAQRVLALAQAIAAD
>SEQF2266_AEE66720.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGTSKPNATSGSTLEYVVDTLRQGILSGRLVPGQRLVEADLTRQLGVSRGPVRESFRRLSAEGLVESIPNQTTMVRRYS
KAEMLELFEIRAELEALAARRAAECMDDPAAKARFLQAIGPIWDEHSLAAGPSYFDENRRFHQAIADLSANTQLAELIRK
LQLPLIMFQLGGAITPQAIQASIDEHRRIAQAIVDGNRRKAAAEVKAHLKRACEMVERMPPDIFRP
>SEQF2266_AEE66721.1 putative acetyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAVQRIGKLLNPSSIAIVGASPAPNKLAGQLIPALREGGYEGAIYPVNPRYQEVAGLRCFASVGDIPDEVDHCVIVVGK
ERVPQVLRDCCAKQVPGASIYISGYAEASGDGREAQRALEEAASALTFIGPNCMGFSNLTARVMAAPSAVLKRAEGVGDV
ALVSQSGGLAYATMAYYAQRDGLGFSHIVNTGNSAGVSYSDLIEYMFQDPATRVVLAVAEAERAACEVIDAVHRLGLRKP
VVLLKLGRGQTGTRMALSHTGSLAGDYRLVRDVAEQHGIACADDVDQVLGLCELLRHGFGAEHAEGIASLCISGGNITLF
ADQADAHGLGFAELDAATEARLTAVLPDYISVHNPIDITALGYENPALHADVLDVLLTDAAVRTVVPILTTVDDYTEVCR
LLADVRARTRCAMIALWNGGSYETRSREILREAAIPVFHSAALLAACLQRLRRAAGRRAPMQAASAAPVADGALRALRES
EAMQWLAGHGVAVPPLRACARAGLAEAAREVGYPLVIKADSADTHISDQDSVILNIRNDGELAQALERVAGWPDERVLAM
RYLPGQELVAGVLAHPQLGQVLMVGSGGQWVELLKDVRFAALPASRDELADALAGTLVGRALHARFRGAAGFDEAVGLLA
ALAEAAVRAGPQVAQIELNPVTVGRHGAVAVDAAVYLRA
>SEQF2266_AEE66722.1 hypothetical protein BPTD_1337 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMKRITTLLRVLALAGAIAPMWAQAADFPSKPVRVVVPYSPGGPADALMRAVGQKLSDKWGQPVIVENRPGANEIIGAD
TVIKAAPDGYTLLLGSEAAFSLNPQLYAKLSYKPADLAPVSRLVTAQLMLVTRPDFPADDVAGLIKHLKANPGKYTYGIT
GIGGVLHLAGAWFNQLYGVQTSEVPYKGLPLAMQDVMAGRVDMLFAIAGGPMPHVATGKLKATALAGPHRVAIAPDVPTF
AQAGYPEFDASVYFALAAPAGTPEDVRRKVADDVGAVVSNADFVARNLTAIGFEPVRETPQAFAAFLELDRGVAAQRVQA
AGVKLDQP
>SEQF2266_AEE66723.1 citrate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNALTSDMGWSDARTIVVRGHDLNHEIIGHLNLGDFAFLEITGRKPDPQESTLFNALLAMLVEHGMTPTAMVARLTYLGA
PESMQAAIAAGLCGMGTKFVGTAEGAARLLQEALPLGSEQALDIDATAQRIVAEQRAARQMLPGIGHPVHKPVDPRTTAL
FALAERTGFHGRYVALMQALSAQAEKALGKPGVLPVNATGALAALASELGIAWQLCRGIAVIGRAVGLVGHIAEELRNPI
AERLWVRTDAEVSAHLKPAPQEPRP
>SEQF2266_AEE66724.1 hypothetical protein BPTD_1339 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLLSHIRVLDLGRFITAPLAGQLLGELGADVVKVESRDAIDPFRAFEGGLYGPHFQSHNRNKRSLALEFATPEGQAALR
RLIAGADVVLLNMRPGAEHKLGLDYESLRALNPGLVYCSITGFGASGPYAHRPAFDNVGQALSGWLSMFHQGSDPRVPGP
PVSDSLTGLYAAMGVLAALLERARSGQGRKVEVSMLESLIAFSNEPLGQLSAKGARPAHYGRASLSQSYILTCADGLRIG
LHLSSPEKFWRSLVEAIERPDLLARFPDRASRVDGYEALARELAAVFAQRERADWMRVLEAHDVPAAPERLLDELADDAQ
VRHLEVFQQLRHPRHGPVTAANRAIRFDGDNHSAFAPPPAFGEHTLEVLVQAGFGAEDIERLHACGAIAATGHGAHA
>SEQF2266_AEE66725.1 hypothetical protein BPTD_1340 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPNILQWALGAAFACVAAASTAQDYPARPVHLIVPYPPGGGTDVVARAVAQRLQAELGQPVVVESKPGASEIIGTGSVA
RAAPDGYTIGLVTSTYSINWVLDASLPYKPAQFAAVAPLVGVPMLALVPAGSPVQDMAGLVAASRQAPGRMNYASLGPNS
LQAMSTEWLKHLSGADLTAVAYKGAAPALVALSTGEVDFTFAGLGASRPMLDAGKVRALAISTAQAFPPMPTLPPVAQAA
PGYDVQIWYGLIAPAGVPPAILDRLNAALARVMDDAALRRQFSDLGYVPTVMDRKAFEQFLQRDTLQWREMIGAAGIRAQ
>SEQF2266_AEE66726.1 LacI family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGIAARTNVTIKDIATRLKLSHATVSRALADHPKISAATKASVREAAQAMGYVPNGTAQNMRTAHSPVIGLIVPDIQND
FYAAVAKIVADAAVARGFQLALSITEDNPEREFNDLRAFVVSRAAGVIITPTIKPKPETIALLKGVRAIQLIRQHAAVAA
EAVVIDERAATRAAAEHLIHYGHRRIAYVGTTTDLSLGEDRLSGFSSAMSKAGLDASLTAVGPPRVEFAHRAVHGLMSGP
KPPTALIIGSSRLTVGALKALRGLGLSCPADVSVVGYGDPDWFELVGDGLTTVSPPVYPLGAYAINLLLARIQGEAVPAA
ADPAHATASRFPATLAIRGSTRPLAR
>SEQF2266_AEE66727.1 isopropylmalate isomerase small subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAFIRAHGIILPMNQDHVDTDAIIPQRWLVTVERDGLADGFMGAWRYDEHGQPRPECVLNQPAYQGAAIVLARENYGCG
SSREHAVWAHQGYGIRAIVAASYGPIFHENCLKNGLLPVTLPAADVATLMAQALADPGCACEVDLVSQRVIGPDGRAYPF
EIDAGRRQLLLEGVDDIDLALARAADIAAFQRRQQQDQPWLA
>SEQF2266_AEE66728.1 hypothetical protein BPTD_1344 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSIKRVRGKTAALFAALGLWAAAVPAAGAATPYPERPIRLIVPFGAGGTTDILGRVLGQQLGEALKQTVIVENRPGANG
NIGSDAVAKAAPDGYTLLFAADATLVINPTLYSQLPFKPESDFAPISRIAVVPLVLVANPAVKADTLPELVKLGGKPDAR
LDFGSAGAGSMGHLVGERLNRATGMSMTHIPYKSGAQAISDVVSGQIPLLITGLAVAEPFLRDGKLKAIAVTSGQRFPGA
PKVPTIAEGGVKDFDSPSWYGLLAPAGTPAPVLEKIHAALASALQTEDMKKCMVELGAWPVVDTQAAFAELIKADTQRWS
QIIQAAGITVQ
>SEQF2266_AEE66729.1 putative mandelate racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRITAIREIAVPLQGNISNSLVSFAEHTVSLVALVSDVVRDGRPLIGYAFDSIGRYAQPGLMRERFIPRLLQAAPHELLD
DGGQAFDPARASAIMLRNEKPGGHGDRAAAVGALELAFWDLNAKLRDEPAYCTIARHVGRPAQAGATQVYAAGGYYYDSG
DPLQRLRDEFRGYLDQGFVKFKMKIGGASLADDLARIEAALGVAGEGANLAVDANGRFDLDTALAYARALEPYGLRWYEE
IGDPLDYHLNSLVAQAYAGTIATGENLFSLPDVRNLLHFAGVRPGRDILQMDPGLSYGLTEYLRMMAAVEAAGFGRSCLH
PHGGHLINLHIAAGLGLGGCEAYPGVFQPFGGYPAACALGAGQVRPTDAPGFGLEQKQELAPYISVLAHGKA
>SEQF2266_AEE66730.1 putative ketopantoate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIAIMGCGAMGSVYAGLLAANGHEVIAVDRWAEHVQAMSEQGLRVEGASGDRVARLRAYREAPAEPVDLIIIAVKAAQA
GSAAAQARAMLGPDTLVLTIQNGLGSADSVAEAIGAERLAVGIAAAFGASLSGPGHVHHNGMSAVRMGAYAGLGAEKLDG
IAEVWRGAGFNAQAVDNLPAMQWEKLICNVAYSAPCTLTGLTIGEVLDAPHASAVSQAAATEAWNVARALGVPVAVEDPV
AHVRAFGERIRGAKPSVMLDHEQRRVSEIDYINGAIPRQAARAGIQAPVNQTLTALVKQREEAWK
>SEQF2266_AEE66731.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF2266_AEE66732.1 putative amino-acid ABC transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGLQGIDKSFGGNRVLHGVDVVIPEGSVTALIGPSGSGKSTLLRCVNLLEIPEAGVLRLGPETLAFDGRRPARDAVQRI
RRQTGMVFQNFQLFPHQSVIDNVMEGLVTVQRWDKPRARARAMELLEKVGMTAKADAWPVTLSGGQQQRVAIARALAPSP
RVLLCDEPTSALDPSLAIEVVDVLRRLAGEGMTMLMATHDLRLAASIAQQVVFLEGGAVVEAGTPREVFAQSRDARTAAF
VSTLTQGLPEEWSAPA
>SEQF2266_AEE66733.1 putative amino-acid ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAWLQLMLDSFWPLLHAGLMFTVPLTLLSFAAGLALAFVVALLRLFGPWPIVALMRFYVWLIRGTPLLVQLFVIFYGLP
SVGIVLDPLPAALIGFTLNVGAYNSEVIRGAIESIPRGQWEAAYSLSMTRGQAMRRTVLPQAARVAVPPLANSFIALVKD
TSLAAVLTVPEIFQAAQRIAAVTYEPLILYTEAALIYLVFSSALSSLQVRLEKRFGQHAVFAEQHR
>SEQF2266_AEE66734.1 putative amino-acid ABC transporter, periplasmic amino acid-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNFSLRKLLLAGLVPLAMIGTAVQADDLAAIKAAGVIKIGTEGTYAPFSYHDASNKLTGFDVEIGRAIAQKLGVKAEFVE
GKWDGLIAGLDVKRYDAVINQVGITDARKAKYDFSDPYISSQAALIVREDNQAIKSFADLKGRKSANTLTSNFGKLAQSY
GAEVVPVQGFNEAIDLLMSGRVEATVNDNLSFLDFKKQKPNAKVKVAAYDKSKEFSESGVLIRKNNPELQAAINKALAEL
KADGTYRKISEQYFGADLSAAQ
>SEQF2266_AEE66735.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKAVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE66736.1 flagellar biosynthesis protein FlhB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAEESDLEKSEAASPRRLEKAREEGQIARSRELGTFMMLAAGVAGVWLSGSMLYQGLTGVLRRGLGFEPRVAQDPGVMVE
QAVHGAGRALLTVLPMFGMLAVVAVLSAVLLGGFVFSTKPLEPNFSKLSLWSGIKRMFSAQTVVELVKALAKAALVGGVA
VWVIWHYHDDMLGLMHVAPSAALTSAMSLVALCSALIVGSLLFVVLLDVPWQIWNHLKKLRMTKEDVRQEHKEGEGDPHV
KGRIRQQQRAMARRRMMSEVPGADVVVTNPTHYAVALKYADGAAGAPRVVAKGTGLIAARIRELAAEHRIPTLEAPPLAR
ALHQHVELGQEIPTALYTAVAEVLAWVFQLRSWRPGLGREPQAPTALVVPAELDPHSPTAAQGA
>SEQF2266_AEE66737.1 hypothetical protein BPTD_1355 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSAALKSCLERENALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLASGPAGTDAA
AAAHPELGPLWQALQANAAQAREHNQRNGTLIAVNLRHTQESLDALRQAAGTGAAATYDAQGRGKRGYSSAASGRAIVAT
>SEQF2266_AEE66738.1 negative regulator of flagellin synthesis [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIQSSTSHPVGPNAVGARAEHAVAQAYGSGAQAGSGSAQVALSPASRQLLAQEGGSDIDVERVAAIRAAIASGQLRIDP
TRIADSLIASARDLLK
>SEQF2266_AEE66739.1 flagellar basal body P-ring biosynthesis protein FlgA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSPRSRSIARLAALAILAGAMPRAAAEPPAQDPAELAAAAESYLRQQLAALPGEPSITLDPLRSDRLDACEALTPFMPS
GMRVRARMTVGLRCVAPRTWTVYAQATVSVPGQYYVAARQIAPGKTIEAADLTTRDGDLVALPPGVITDAAAILGMRPAH
RIAAGQPIKGAGLRSAESVSRGQSVRITARGNGFVVSSEGQALDNAPPGATVQVRTASGQVVSGIVQAAGLVEIQL
>SEQF2266_AEE66740.1 flagellar basal body rod protein FlgB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDRLNEDFRFFQQSIALRAQRQEVLSSNIANADTPNYKARDFDFKAAMQGALEQRMRLPDTNLALISARHIPGQATTPS
PAELMYRLPYQPSLDGNTVDMDSERVRFADNTLHYQSSLQVLSGRIRSLMSAIQE
>SEQF2266_AEE66741.1 flagellar basal body rod protein FlgC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLLSIFEIAGSALSAQSQRMNVSASNMANADSVAGPDGQPYRARQVVFQVNPPAGQAFGQEIGGVRVAGVVEDQSPFKK
IYDPKHPMADAQGYVNMPNVDPVAETVNMIAASRSYQANVEVLNTAKQLMLKTLTIGQS
>SEQF2266_AEE66742.1 flagellar basal body rod modification protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTVNETTSQAGLALAQAGSNSAAQGIQDQFLTLLVTQLRNQDPLNPMENAELTSQLAQISTVEGINNLKNTMLAISGQI
DVSQSMDAVSMIGKGVLMPGDKVSLGADPNDPAQRGATPFGIDLQGDATKVTVKVLDPSGAVVRTMELGDLKTGVHTLQW
DGNNDGGQPLADGKYSITVSASDADANPVKTEALTYGQVKSVAYSTNGLRLDLGLAGQISMLDVRKVIGASGSA
>SEQF2266_AEE66743.1 flagellar hook protein FlgE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGFGQGLSGLNAASQNLDVIGNNIANSGTVGFKSGAASFADVYASSRVGLGVKVSAINQRFTVGNISTTGGEYDMAIDGG
KGFFRLTDQSGGVFYSRNGEFMVDKNFYIVNAQGFRLTGYPAGGVGAQPVDLQLPQGNIAPQATSTAGLQTNLNANAKVI
DPNDTPPEDGLVELDGTTYRFTNAGGTFAWVAPAPLDGTYNGGDIVIAGGAVTGDLTSQPGYQPYKPLVAGIPFDPTNPL
SYTDQVPTTVYDSLGNSHQMIQYFAKRPAVGTESVYEVYYVLDGQAMQVNGGASQTLNFDTAGNLLNQPPTAQVTFANPG
GNAAPADPLEITVSYNGVTQYGSDFAPKVVQNGYSSGEFMGLSVGKDGSLVAKYTNGETQTIGTLVLANFNNVQGLQPVG
NNAWVETSESGQATLGQPGTNGLATIAGQALEASNVDMSRELVNMIVAQRTYQANAQTIKTQDEVMQVLMNMR
>SEQF2266_AEE66744.1 flagellar basal body rod protein FlgF [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDRIIYTAMNGAARIAEHQTVLGNNMANVNTPGFREQIALYRSVPMADGTSLPTRVSTVASTPGNNFEMGNMMTTGRELD
VALAGPGWFALQTPQGEAYTRAGALQVGVNGLLQTATGQPVLSDQNAVIEVPDQASLTIASDGTVTAIGAGDPPNNILNL
GRLKMVNPPPQQLVHGDDGVFRMPPQPGGQPAAPLPADPSQRLLSGVLEGSNASPMGAMVGMIQNARRFEMQMQVIREAD
KNAERANGILAAAS
>SEQF2266_AEE66745.1 flagellar basal body rod protein FlgG [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMRSLWVAKTGLEGQQTSMDVISNNLANVQTNGFKWGRAVFQDLMYQTLRQPGAQVGDANQLPSGLQLGMGVQVAATQRV
FSQGNMNNTGGEMDIAIQGRGFLQVELPDGTQAYTRDGSLQVDQNGQLTTAGGYVIQPPINVPDNALSLTIGKDGTVSVT
QPGAAGTNVQIGQLQVATFINPTGLQSVGENLYLETDSSGPANLLQPGIDGAGQILQQYVETSNVNVAEELVNMITTQRA
YEMNSKAVKTSDEMLARLTQL
>SEQF2266_AEE66746.1 flagellar basal body L-ring protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKTVLRLPVCAALLALAAGCAMIPPEPVVICPLTAPPPSPPQPSARPNGSIYQPSAYGNYPLFEDRRPRNVGDIVTIVL
EEKTNAAKGVATNTSRDGSATLGVAAAPRFMDGIINDKLDTDISGGNTANGTGKSSANNTFTGTITTTVIGVLPNGNLQI
AGEKQIAINRGSEYVRFSGVVDPRSITGSNTVSSTRVADARIEYRSKGVMDEVQTMGWLQRFFLIASPF
>SEQF2266_AEE66747.1 flagellar basal body P-ring protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTFPTSLSVLLIPLARAVLALELLGAGAAHAERLKDLASIQGVRGNQLIGYGLVVGLDGSGDQVRQTLFTQQSLTNMLSQ
LGITVPQGSNMQLKNVAAVMVTATLPSFARPGQTVDVVVSSMGNAKSLRGGTLLMTPLKGADNQVYVIAQGNLLVGGAGA
SAGGSSVQINQLNGGRISNGAIVERAVPTMYAQDGMVYLEMNNTDFGTTQNAATAINRQFGAGTAMALDGRVIQVRGPLD
PSMMPAFMSQVENLQVARAPATAKVIINARTGSVVMNRTVMIEEAAVAHGNLSVIINRQNQVFQPDTPFTEGQTVVVPNT
QIEVRQDGGALQRVTTSANLADVVKALNALGATPQDLLAILQAMKTAGALRADLEII
>SEQF2266_AEE66748.1 flagellar rod assembly protein/muramidase FlgJ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFVSYTSRPGVQESVFDLGRLADLKRDAVKAPDGQRQQTEVARQFEALFLQMMLKRMREATPKEGLFDSQQTEMLQGMA
DEQLALQLASPDIGLAQALLGQMQQGQPPVPAAAAAGGDAAAARALAGTAAPAPLVRDLRGNYVQPDPAPRREVNALLDV
LRSNRARDRAMAAAEGAPSHVVDFVSRMSRAANVAAQQSGVPARLILGQAALESGWGRRELRHEDGSTSYNLFGIKAGAS
WKGKVVNVMTTEYVDGVAQKLVQSFRAYSSYEESFSDYARLIGNSPRYEAAVTQAGNEIEAARRIQEAGYATDPRYAEKL
ISIMGQLRTSVARADFSGGL
>SEQF2266_AEE66749.1 flagellar hook-associated protein FlgK [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLYNLALTGLNASQAGLETTSHNINNATTVGYSRQRVITSTAGAGETGQGFFGRGVQVDTVTRQYDSFLYRQLVGAQGS
SAQLSTHLAQVSQVNNLFGDRTVGITPALAGLFTSTNAAATKPADPAVRADMIGKANSLVTQINTAYQELENQRNGLNTQ
ISTTVEQANSYLERINDLNKKIVIARGKDGHAPNDLLDQRDQAVSELNQLTGIRFYEQGDAFNITLQSGQTLLSGTTVYP
LQAVPSASDPKRLTVAYTLPSGPGTTIQVEMNDSEVTGGQLGGLLSFRSQSLDAVQDQLGQLAIGLAMAFNAQHRQGYDL
DGQPGGDMFGLQAPAAIRNSGNTSTGEWQSAYTDADAIRASAYRIQYDGANYTVTRLSDGSSFDVTPSGTPPTLSFDGLT
LTGSGTPAAGDAWTLQPARDAARDLKQLISDPSKLALADSALGTTNGNNGLKLAELQTAKVLGNGSMSLNEMFSQLVNNV
GVQTQQVSTANTAQANLVKQQATAHLSVSGVNLNEEYVNLTIFQEQYQASAKILDVASTVFDTLLGLR
>SEQF2266_AEE66750.1 flagellar hook-associated protein FlgL [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLSTALIYQNGLNGVLNQEAAMARLQEQLSSGRRVLTPADDPLAAALAINVSQTSSMNSNYDANRKQAEQALGAQTNTL
QSVVKNMQEMLKRVVEAGNGTMSDADRQALVIALKGAREELVGLANATDGNGQYLFSGYKGFTQPYSFDAATGKVTYNGD
LGQRGIQVDQSRLMSGGDVGSDIFNSVTSGTLAYIADAGAGNTGTGQYSAVSFDGPRAGNYVGRDFRIEFTRDAVTDELQ
YSVLSDPPVVPPEQPLPANMPYSEGSVIDMNGVSIKLSGQPEAGDVFTVETPKSWKMGVQGDAANTGSATLTPVSLPDGL
TGKNLSVAFLDDGAGGLLYSVTSTPPDPSLPANVPVKPGDVIDIGGLKVKVDGQPAAGDTYAVTTPKSANVDVFDTLNDL
IGALDTPISGDPQAAAALANTLATANKKLNLSLDNVLTVQASVGARLNELEALGNTGAQKVLSYVKQLSDLEDVNIYQAT
SDLLLRQVALQAASLALQRIQGNSLFSMGR
>SEQF2266_AEE66751.1 methyl-accepting chemotaxis protein I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWSNLKVRTCITLVLGLFLVAMLVSNGMAWLGMSSSNDKLERVNNAYSNQAVPAYDAYVMLLRARLNIVSSMMDLQEGRL
KESADTLAHAQRQAGEARERFEAFLAVAKASSGADRVGAVETAFHAYLEVAARQMEAMQNQRLGEFVQLNPSAQRLNTAF
DTAASAYLDRIDTDTDALVDDARAEHLRANTVTLVLIVLALALCAGCGVFIGRAVLRPLKEAGQHFDRIAAGDLTARVDV
RNSNEIGQLFAGLKRMEESLTRTVAAVRRGVDEINVGSREISAGNTDLSSHTEEQAASLEETAASMEQLASTVKQNADNA
RQANQLAGVASDVAERGGSAVSEVVTTMQDISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEV
RSLAQRSAQAAKEIKVLIEDSVGKVGTGSQQVERVGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDEA
TQQNAALVEEAAAAAGSLQEQAQRLAEAVSVFRINAGEVIDVSARQLAQQRQAPRVAAAPASAAAPEAPPEPAPRLARPA
ARADVAAEAASVRRPARRPAATEPAARTTAAPSRRRPPADNDWESF
>SEQF2266_AEE66752.1 methyl-accepting chemotaxis protein II [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFANLKVRTGLLLALVALALAALVSIALGWESVREGSRSLHALDSVSVQQGSLLKDAYAQMLRATIRADIAAVQRRGDAA
GTLENERTVKQLMGEAKARIEAFRKVPKLSELGRSMETGLTSSFGSFAASLDEMMAALERNDDAAYLQLKNVKAGQASAA
FAARLGEFSTNLDKLSSETLAAHETRETIMLYVYAALLLLIVGVIAGSYLYMTRAVVRPLQRASQQFERMAAGDLSARIE
GNSRNEIGALLTALRHMQESLTRTVAAVRRGVDEINVGSREISAGNTDLSSRTEEQAASLEETAASMEQLASTVKQNADN
ARQANQLAASASDVAESGGSAVSEVVSTMDGISASSRKISEIVSVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGE
VRSLAQRSAQAAKEIKVLIEDSVDKVGTGSQQVERAGATMQEIVASVKRVTDIMGEISAASEEQSSGIEQVNRAVSQMDE
VTQQNAALVEEAAAAAGSLQEQAQRLAEAVSVFKINTGEVIEVPAHQLSGYAAPLVAQS
>SEQF2266_AEE66753.1 methyl-accepting chemotaxis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVNLPIYDVETKLREDQYLISRTDTKGRIVYANPAFVEVSGFERDELIGKAHNLVRHPDMPPQAYEDLWRTLQAGQSWL
GVVKNRRKDGGFYWVLANATPIYEDGEVVAYSSVRVKASDEQIEAAEAAYAQLRAGTLRGRRLWRGQVVPTGWRRVLAAA
AFPLRGGLSARMLRQSLLAALGVLAMQWRLRGAVLRTMEGAADMARQVAAGNLTTQIGSDANDEVGKLAFSLDVMRKNLV
GIARGNQELSARTDDQSASLQNTAASMEELTSTVRQNADNARQANDLAARSMDVARRGGDAVGRVVDTMHGISDSSRKIA
DIVNIIEGIAFQTNILALNAAVEAARAGESGKGFAVVAGEVRSLAQKSAQAAREIKDLIEDSVSRVTEGSLQAEQAGATM
QEIVDAVRGVTDIIGEISVASQQQASGIEQVDEAVSQMDGMTVQNFGLVQQLGNTVAQLGQQSAALRETIRVFRMAREQG
>SEQF2266_AEE66754.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE66755.1 flagellar biosynthetic protein FliR [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIAFTMEQLNGWLAQFLWPFVRILALVGAAPLFSESTIPTRVKIGLAFMLTIAVAPAIGPMPAVPPSSYAGLFLLSQQVL
IGIALGLSMRVVFAAVQTAGEFVGLQMGLSFASFFDPATGANTAVLSRLFNIVAMLVFLALDGHLLVLGALVRSFDTLPV
AVGVLDRNGWGILAEWGTTIFVSGLLLALPLICALLTINLAMGILNRAAPQLSVFAIGFPVSLIVGLVLLAIVLPHSGPF
LERLFEQGLNTMNNVANGLAGK
>SEQF2266_AEE66756.1 flagellar biosynthetic protein FliQ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAETVMSMTYQALKVALALAGPLLLVTLIVGLVISIFQAATQINEMTLSFIPKLLAMCGTLVLLGPWLLGLLTDYIRQL
IGQIPMLVS
>SEQF2266_AEE66757.1 flagellar biosynthesis protein FliP [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAVAVAAAALWPSGALAQATLPALTATPGPNGSETYSLSMQTLLLMTSLSFLPAALLMMTGFTRIIIVLGLLRSAMGTA
MSPPNHVLIGLALFLTFYTMSPVFDKIYTDAYQPLAAGSIPFETAVERAGAPLHNFMLHQTRENDLTLFANLANLPAMED
PSQVPMRILIPAFITSELKTAFQIGFTIFIPFLIIDLVVASVLMALGMMMVPPVTVALPFKLMLFVLADGWHLLLGSLAQ
SFYQ
>SEQF2266_AEE66758.1 flagellar protein FliO [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTESAVLRVVIGLALVIAAILVSAWLARRSGLIQRHGGALLRQVGGMSLGPRQRVVVLEIEGTWLVLGVTPNQLTTLHTL
PAGQLPDPSPAAAGTFAAKLGQALQRGHRVDRP
>SEQF2266_AEE66759.1 flagellar motor switch protein FliN [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDTNERPDQTGAGAPAPAADDWADALAEQNRAAAPTQADGLKPQDDWADALAEQNAAPAAAAQSVFKPLATKETGQGTD
IDLIMDVPVQMTVELGRTRLTIKNLLQLGQGSVVELDGLAGEPMDIFVNGYLIAQGEVVVVDDKYGIRLTDIITPSERIN
RLNSRR
>SEQF2266_AEE66760.1 flagellar motor switch protein FliM [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAYEAFLSQDEVDALLAGVTGESDEKQPAGDEAGAPRAYDLSSPERVVRRRMQTLELINERFARHMRNVLLNFMRRNADI
TVGAIKILKYADFERNLPVPSNLNMIQMKPLRGTALFTYDPNLVFLVIDSLFGGDGRYHTRVEGRDFTTTEQRIIRRLLN
LTLESYGKSWDPVYPIEFEYVRSEMHTKFASITGNNEVVVVSPFHIEFGATGGDLNICLPYSMIEPVRDLLTRPLQDTAL
EEVDQRWAQQLQRQVRSADIDLVAEFGHIPSSIGELMRMKTGDVLPIAVPETVTAHVDGVPLMECGYGVFNGRYALRVQN
LINYDDTDSNEAPDHD
>SEQF2266_AEE66761.1 flagellar protein FliL [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPRTTLPLRPGGAGRLLRPLLMLLVLALVVAASVAGTWYFMKRMQPPVAVPVQLGVGQPQATPMQFVAPPATPPVVPAP
IFIPLEAFTVTLQNADSERILHVGITLRVSDEQTRQRIEKYMPEVRSRILMVLSSQSPQAVQTLQGKTEMAHAITEAVKR
PFSPLPDGQYVTDALFTAFVVQ
>SEQF2266_AEE66762.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66763.1 flagellar protein FliJ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSQLPLDMLIGLAKDSTDEAARELGRLSAERNNAEQQLNMLQDYRQDYLQRMQTAMQSGMSAADCHNYQRFIATLDDAI
GQQRHVLHRAEAHLNDGRLNWQQQKRKLNSFDTLAQRESRTQALLEARREQRVNDEYSARLVRRQAGF
>SEQF2266_AEE66764.1 flagellum-specific ATP synthase FliI [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVADRWQTQLQIGSIRAASTEPWLVSGRITRAAGLVLHTTGLRLPVGAACRIELARGHDHWADAEVVGFDGHTLYLMPQ
SDISGLPPGARVVPAEPAVQRPVPLPRKAELNGNAKPQVGRHLPVGNAMLGRVVDGAGRPLDGLGPLAGAEQAPLTALPI
NPLSRAPIDSVLDVGVRAINGLLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADIIVVGLIGERGREVKEFIEHNLGPE
GLARSVVVAAPADVSPLLRLQGASYATRLAEHFRDQGLDVLLIMDSLTRFAMAQREIALAIGEPPATKGYPPSVFAKLPA
LVERTGMGAPGPNGKAGSITAFYTVLAEGDDQQDPIADSARAILDGHVVLSRHLAEAGHYPAIDIEASISRAMTSLITTE
QFQQVRRFKQILSRYQRNRDLISVGAYVAGADPQLDDAIARYPRLEAYLQQNIGDSVDYGTAIDQLQRSLETREAYA
>SEQF2266_AEE66765.1 flagellar assembly protein H [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEALAREPVALPRSAAWRRWQMLSFDEPAEAETPEPAALEPEPEPAPDPEELLREWRATAERAGHAAGHQAGQEQGQRE
GYAAGHAQGLAAGRAEGHAEGLAQGREDARQQAERLHALAQACAASVARLEDNMGQSLLTLALDIAGQVLRTTLAEHPEA
MVAAVREVLQINPATGAAMRLWVHPDDLELVRTHLADELNEANWRLQADESITRGGCRTETAYGDVDATLQTRWRRVAAS
LGRSAAWEETA
>SEQF2266_AEE66766.1 flagellar motor switch protein G [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNDGKPLDGMTRSAVLMMSLGEDAAAEVFKYLSAREVQQVGAAMASLKQVTRGDVAVVLEEFRQEADQFMAVTLGSDDY
IRTVLTKALGSDRAAGLIEDILEAGEGGSGIDALNWLDPHTVAELIGDEHPQIIATILVHLERDRAASVLAMLSERMRND
VMLRIATFGGVQPAALSELTDVLNSVLAGQGAKRSKMGGVRTAAEILNMMNSSQEEAVVESLRERDSDLAQKIIDEMFVF
DNLLDVEDRAIQLILKEIDNDTLMVALKGAGDELRNKFLRNMSSRAAEMLREDLEAQGPIRMSKVEGEQKKILQIARRLA
ESGQIVLGTQGDDAYV
>SEQF2266_AEE66767.1 flagellar MS-ring protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQQATLSASLMARFPVLEKLRALPKPVLLGAAAALIAVVAAVAMWSREPDYKVLFSNLDDRDGGAIVSALDQMNVPYRF
SDNGSALLVPAERVYDTRMQLASQGLPRGGSVGFELLDNTRFGASQFAEQINYQRGLEGELARSIEAMHTVQHARVHLAM
PRQSLFVRDRQAPTASVLLNLYPGRSLSDAQVSAVAWLVASSVPELTAENVSIVDQNGRLLSAPLGEGRGMDADQLRFVR
EMEQRTVERILTILNPLVGPGNVHAQASAEIDFARREETSEVYRPNQEPGQAAVRSQQTSDSRQTGPNAAQGVPGALSNQ
PPANAQAPIVNPPAVAGTPQQQQQQRAQQQAAGATTTQTQQGAAAPSNDRHDATINYEVDRTISHVKQPVGMLKRLSVAV
VVNYLPNKEGESEALPPEELNKLTNLVREAMGYSEARGDSLNLVNSQFNDTPVAVPLWRDPELIAMIKTALGWLFGLILA
FWLYRKIRPVVTDYFYPQVDPEVAAAQRQEAEREAQAAARTREVNRYEDNLQLARDMAGKDPRAVAMVLRSWMSKDEK
>SEQF2266_AEE66768.1 flagellar hook-basal body complex protein FliE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVSGLSGIESMLSQMRAVVRAAQSGGATEAELAPGPSGFAAELQRSIRSVSQAQNAASDQAKAFELGAPGISLNDVMID
LQKASLGFQTSVQVRNRLVAAYKEISSMAV
>SEQF2266_AEE66769.1 hypothetical protein BPTD_1388 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAQDQIVVLTQSDQIRSTLQERRHPDCQIVISGIDQRPWPVRILGPDAKDGYFFWRPLDQACPDPVMLARMADEDEPPL
AFHAQTADGARIHFCVDSPVTLRFGDGSIAVLSLFPSAVRHTCARPPQAPA
>SEQF2266_AEE66770.1 putative flagellar protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTPAPPTPATADADPNRPVAVALSYDGGEAAPRVVAKGYGQLADTIVRTAREHGLHVHESRELVGLLMQVDLDAHIPPQ
LYTAVAELLAWLYRLEARELPEALAPRA
>SEQF2266_AEE66771.1 flagellar protein FliT [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTALTQHAPVLEIYQDIANLTSRMLAAANASNWDLVLNHGQEYVCLVERLRELEPGEPLDEAARGMKFDLLVRILENDAA
VRDLALPQLARLSDLLGRMKRQQSLLATYSGKANGT
>SEQF2266_AEE66772.1 flagellar protein FliS [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTYAARRPTGSYSVKSYSDIGLETQVMSATPERLITLLYAGARAAIAQARLHLEAGRIVERGQAIGKAIRIVDEGLKLGL
NQNAGGEVAANLARLYDYITRTLLTANLKADKEQLDIADRLLADLSEAWQASVDHPAPAVPA
>SEQF2266_AEE66773.1 flagellar hook-associated protein 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATISSLGSSGLELEGILEKLQAAEEKKLTLITARQASYETRISAYSKIQAAVEAVQKAAATLGSIDTLSAVKAVVSGDG
LSVKTAAGAVPGQYTVNIDKLATAQNLQSGQLDSRTDKHGTGGSIEIVQKDGTTTTVTLGEDTSLNGIVKAINGTDGLDV
RATVISDGNGKHYLMLNNKTEGTETAVTRITVSGNQEVADILDFDAANAGASNLTVQLAAQKAELTINGIPVVSDTNTVE
TAIDGLTLTLTKQSAAPLTVTVSSDPSVAATAVNDFVKAYNGLQTTIADLTAFDVKAEKQSALTGDGTTRNIQSAIAAAL
RVATGEGTLRTLSQLGITTDPKTGSLKTDTEKLEAALRDNPADVARIFSGPFGLGEKVKLATEQILGDEGSIKIRQEGLE
ETLESLQNQYDRQKLSIAATIEAYRKQFVQLDVFVTQMNNTSNYLSQQFAALSGTKK
>SEQF2266_AEE66774.1 putative flagellar protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVSPINAAAPALVSVAPAPVPAQPAAAVAPAAAAANGGGAQSATQDQYGAPKLPMDRALEEINAQLKAWSTQLQFEIDP
DVHQVVVSIVDAETGDVLRTIPSEAVIRIAKMIVKMQGNAVETTA
>SEQF2266_AEE66775.1 FolC bifunctional protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSRPDASADLPAWLQYLESIHAKAIDLGLDRVRQVAGRLDLSLDGVNFVVGGTNGKGSTCAMLESILLAAGYRVGLYT
SPHLIDFNERARINGEIASDAALVQQFEAVEAARGDVSLTYFEFTTLAILRLFAQSRLDAVGLEVGLGGRLDAVNIVDAD
CSIITSIDLDHTDWLGDTREKIGFEKAHIYRAGRPAICADPVPPQSLLDHVQAIGADLWLLGRDYNYSGDRQQWAYGGRA
QRRNALAYPALRGANQLLNAAAALAALEAVRDRLPVPQQAVRLGLLQASLPGRFQILPGQPTVILDVAHNPHAAAVLAQN
LDNMGFHPYTHAVFGMLADKNVDGVIARLGSRVDHWYCAGLPGPRGLDGQALAGHVRQVLPEAEGAAETPTVQACADPAA
AYAAAREKAGEGDRIIVFGSFLTVASVLQALGRKI
>SEQF2266_AEE66776.1 hypothetical protein BPTD_1396 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVLAAVIVLPMILDSEPVPVDSDIPIRVPDRNSAFQPTVNDPQAAAPQPEQPAPQAPAGTPEAGAPQPPALASAPPQTPP
PGQTPAQPQTPPAAQPPATPPQQAATPPAAPKPEAKPEPKPAKPAAPARSDDGARAMALLEGRSPPPAQSKPAANGNFVL
QVASYTTQADAQARRGKLHQAGVTNAFVEQASINGKQQYRLRVGPFPSREAAQAAQARLRTLGYDNGFIAAQ
>SEQF2266_AEE66777.1 colicin V production protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGFDFVVLTILAVSAVLGLVRGLLKEILSLLAYLLAFVAAIWWGPTVYVWLEPYIETALLRMGIAYAVVFIIVLLAVGL
VNMTLAALIRTTGLTPADHGLGAMFGLARGLVLVLVLVALAGFTPLPQEDWWRDAMFSHSATEAVRQVKSWLPPSLATWL
PY
>SEQF2266_AEE66778.1 amidophosphoribosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCGIVGVIGRGPVNQLLYDSLLLLQHRGQDAAGIATLQGNHFNMYKAHGLVRDVFRTRNMRALPGTSGVGQVRYPTAGSS
ASEEEAQPFYVNAPFGIMFAHNGNLTNWRELRESLYRVDRRHINTNSDSEVLLNVLAHELQSAASGVSLDDDTIFRAVSA
VHQRVKGAYAVVAQISGYGMLAFRDPHGIRPLCIGRQETEEGVEWMAASESVALEGSGFAFVRDVEPGEAIFVDLDGRMT
SRQCADNAQLVPCIFEYVYFARPDSLIDGVSVYDARLRMGEYLADKVARSMRLGDIDVVMPIPDSSRPAAMQLAHRLGLD
YREGLIKNRYVGRTFIMPGQAVRRKSVRQKLNAIGMEFKGKNVLLVDDSIVRGTTSREIVDMARAAGANKVYFASAAPPV
RFPNVYGIDMPTQKELIATGRTDDEIARTIGADALIYQDLQDMQQAVRDINPRLSRFEASCFDGEYVTGDITAEYLARLG
QSRDSSAGDEEAGGLQFNMGYAANDA
>SEQF2266_AEE66779.1 disulfide bond formation protein B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRYRERLLFLIAILCFGAVGLALLSQHVFDMPPCAWCVLQRLIYLCIGVVALAGALAGAIAARLAAMLAALLAICGIVA
AWYQYSVAAKMLSCDQTFADRFMSATGLDGALPWLFGIYATCMDATVAVLGIEYAIWSLALFVIVLALALPAALRRNA
>SEQF2266_AEE66780.1 PII uridylyl-transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHVDLNPLKQRMQAARAAAVAQFRQHPRPDMLLTELRRIVDQALRELVKLCPLPAGATLAAVGSYGRGELYPHSDVDLL
ILLPQPPSAADARAVEALVAALWDLGLEPGHSVRTLEDCEREARGDITVETALLESRWLAGSRTLMKRLDSAMQARLDAA
VFFQAKRVEMQQRHAHYQDTPYALEPNCKESPGGLRDLQVILWMARAAGFGHSWREVAQAGLLTSSEARDLRRAEQAFKR
LRIELHLLTGRREDRVLFDLQPGLAAVYGIASTATRRASELLMQRYYWAARLVTQLNVILVQNIEERLFPRPDSDARLID
DDFRNLRERLDIVREDGFERNPTLLLRAFLVMQQHPELIGMSARTLRAIWHSRHRIDAQFRRNPVNRKLFLQILQQPRGI
VHELRRMTMLNILPRYLPVFRRIVGQMQHDLFHVYTVDQHTLAVVRNLRRFTMPEHAQEYPLASQLIAGLDRHWLLYVAA
LFHDIAKGRGGDHSELGAREVRRFAQDHGLDPTDAELVEFLVRHHLLMSAVAQKRDLSDPQVVRDFAAQVGDERRLAALY
LLTVADIRGTSPRVWNAWKGKLLEDLFRLTLAALGGAHADAHTVLTERKDEAARLTRLAGLRDDAREAFWNQLDIAYFLR
HDASEIAWHTRHLYYQVAPDEPVVRVRPTEHGEGLQVMVYTRDAPDLFVTTCGYFDAKSLSVQDARVHTTRHGWALDSFI
VLAPEGFADLRAQATLVEHELAERLRDPHAARHAHAPRRLPHSHARRSRVFPVMPQAELSPDERSQSWRLSVTATDRPGL
LYALARVFAEHGVDLIMAKIMTLGERVEDVFIVSGSALERPRSQMQFERAILDALAGDEPRQQAA
>SEQF2266_AEE66781.1 methionine aminopeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGIVTDPADLAKMRAACQDAAKILDFITPYVKPGVTTGELDKLCLAYLTDELKVKSATIGYAPPGYPPFTGAICTSVNHQ
VCHGIPGDKVLKNGDSLNIDVTIIKDGWFGDTSRMYHVGEPSILSRRLTDITYDCMWKGIEQVRNGATLGDIGHAIQKYA
EAQGFSVVREFCGHGIGQRFHEDPQVLHYGKPGTGVKLVTGMLFTVEPMINAGRREIRQLADGWTVVTRDHSLSAQWEHT
VLVTDTGYEVLTVSPGMPAPPAFVTRPVEIPAL
>SEQF2266_AEE66782.1 30S ribosomal protein S2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLMREMLEAGVHFGHQTRYWNPKMAPYIFGHRNKIHIINLEQTVAKYQEASKFVKQLVARGGNILFVGTKRAARELVAT
EAARCGMPYVDARWLGGMLTNFKTVKSSIKRLKDMEAMVADGGFERMTKKEGLLFQRELDKLNKSIGGIKDMNGLPDALF
VIDVGYHKIAVAEAKVLGIPVVAVVDTNHSPDGIDHVIPGNDDSARAIALYAKGMADAVLEGREQNINGLVEEIGEGQEE
FVEVQDNQA
>SEQF2266_AEE66783.1 elongation factor Ts [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAEITAALVKELREKTDAPMMECKKALTEAEGDLARAEEILRVKLGNKASKAAARVTAEGLIGLYIAADGKQGAVIEVNC
ETDFVAKNTDFIDFINKLAELVATQNPADVAALSALPFGEGTVETTRTALVGKIGENISVRRFERIQTPNSLASYVHGGK
IGVLVEFSGAEEVGKDLAMHIAATKPKALNADGVNAEDIAAERSVAEQKAAESGKPAEIVAKMVEGSVQKFLKEVTLLSQ
PFVKNDKQTIEQMLKEKGASITKFVLFVVGEGIEKKTADFASEVAAAAAGRA
>SEQF2266_AEE66784.1 uridylate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSRSYKRVLLKLSGEALMGEDAFGINRSTIVRMTDEIAEVAALGVELAIVIGGGNIFRGVAPGAQGMDRATADYMGMMA
TIMNALALQDALKHKGVDTRVQSALNIDQVVEPYIRPKALRYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEIGAEIVLK
ATKVDGIYSADPNKDPTATRYARISFDEVIVRRLEVMDATAFALCRDQKLPIKVFSINKSGALKRAVSGEDEGTLVHV
>SEQF2266_AEE66785.1 ribosome recycling factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVADIRKSAETRMAKSLETLKASLAKIRTGRAHTGILDHVQVEYYGSPVPISQVANVNLVDARTISVQPYEKSMAGPIE
KAIRESDLGLNPVSMGETIRVPMPALTEERRRDLTKVVKSEGEDAKVAVRNLRREANEALKKLVKDKEISEDDERRAQDD
VQKLTDRAVGDIDKMIVQKEAEIMTV
>SEQF2266_AEE66786.1 undecaprenyl pyrophosphate synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALSSTQAIPETGDIPRHVAIIMDGNGRWATRRHLPRTAGHAKGVHAVRRVVEACGRRGVRYLTLFAFSSENWRRPADEV
SLLMRLFVQALEREVDKLQDQGVRLHVVGDLSAFEPKLQELIAQAQERTEHNDRLHLTVAANYGGRWDILQATRAMLRAD
PGLAQDPDRIDEARLAEHLSMAWAPEPDLFIRTGGEQRISNFLVWQLAYAEFYFTEQFWPDFGADELDAAFEWYRTRERR
FGRTSAQLRGGAKR
>SEQF2266_AEE66787.1 phosphatidate cytidylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLGQRIITAAVLLAVLALTLALANPWWFVALLALGAACAAWEWLRLTVRQPLSGALCVGLAAALLAAMLAMAQAWIQGGV
SGLRLEVWVGYWLTPAVVAVWLLGAGTAVARGRADAPAASLGWTLFAIPAVLAAWSVLALMYLSRGGAYVVSLLALVWVA
DIAAYFAGRAFGKRKLAPRVSPGKTVAGAVAGVLGAVAWIALSSQWDGTYGQALVERWSWWLALPAAALLGVVSIVGDLF
ESLLKRRAGRKDSSALLPGHGGVYDRIDAILPVAPLALLMSGVLF
>SEQF2266_AEE66788.1 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRFQRVAVLGSTGSIGDSTLDVIARHPDRLGVYALSAYSRMDKLAAQAAACGAAVVVVPDDAAAARFRAAWRGKAAMPE
VRVGPRALAETAAAPECTTVMAAIVGAAGLPAALAAAQAGKRVLLANKEALVAAGSLFMAAVRENGAELLPIDSEHNAIF
QCMPQGARAAAPTAPAPGVRRLLLTASGGPFRRQDPADLHEVTPAQACAHPNWSMGRKISVDSATMLNKGLEVIEAHWLF
AMPSERIDVLIHPQSVVHSMVEYDDGSVLAQLGQPDMRTPIAYGLGFPERLASGVGLLDLTRWGRLDFEQPDLQRFPCLA
LSFAALRAGQPACVALNAANEVAVAAFLEGRLRYTWIARVIEAVLEWQAKQASVTLTSLDDVLDLDARARSFAGNLGLA
>SEQF2266_AEE66789.1 hypothetical protein BPTD_1410 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLFTLLAFVVALGTLITFHELGHYWIARLCGVRVLRFSVGFGRVLARRTDRHGTEWAISAIPLGGYVKMQDDPPAGASAA
EAARSFNAQPVGRRIAIVAAGPLFNLFLAVVLYAGLNLAGTEVPAPVVGQPAAGTPAAQAGLMAGDRIEAVQGRAVDSWN
DARWRLLDVLSSQGEAQLEVRGPGGAARGLVLQVPGGNRLDPADGDPLAETGLRLAQPKPVVREVIAGGAGEQAGLRGGD
LIVAAGQAADLDAGALVALIQRHAGQPLALTVQRGADRLTLTVVPRAESVQGQEVGRIGVQLGGDIPMVTVRYGVIDSVW
RGVQRTWDTAWLSLRMMGRMVLGEVSWRNISGPVTIADYAGQTARIGLKAYIAYLALISISLGVLNLLPIPMLDGGHLLY
YLVEIVKGSPVSDRWIDIGQRAGIGLLAGLMGLALFNDFARLFT
>SEQF2266_AEE66790.1 surface antigen [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLRRMFHHKKGVIPGLLAAALLAPALAHAFEPFVVRDIRVEGIQRTDAGTVFGYLPVKVGEKFTDEEATEAVRRLYGTG
FFSDVQIQTDNNVVVVVVQERPTIASISFNGMREFDSKAITKSLAQVGFGEGRIFDQSMLERAEYELKEQYLAKGKYGVE
VTATVTPLPRNRVGVSFDVFEGEVAKIREIRVVGSKAFSEGELLDQFDLTTPGWLTWYTNTDKYSREKLEGDIERLRSFY
LDQGYLEFTVEPPQVTISPDRKDIYITITVHEGEPYKVREVKLAGNLMGLDSEINNLVEIKPGEVFSAAKANNSAKAITN
YLGDLGYAFANVNPNPQLDRAKHEADVTFYVDPSRRVYVRRIQIGGNTRTRDEVVRREMRQQEAAWYDAGDIKVSRDRVD
RLGYFNEVNVKTDPVPGSPDQVDVNVDVKEKPTGIINLGVGYGSSEKAILSAGISEDNVFGSGTNLTLQLNTSKTNRAVV
LSHTDPYFTKDGISRTTSAYYRVTEPWDNNDGDYRVKAMGLGMNFGVPISEYDRIFLGGTFERNQIDLYNNSPQAYRDFV
DQYGNSTNALIFNTGWSKDTRDSALAPTKGAYTRLKGDFSTMDLKYYLLTAQQQYYLPLGRSYTLALNGMIDYGRSYGGL
DYPVIKNVYAGGIGTVRGYEGASLGPRDRLTGDYIGGSRRMVANAQLYLPFPGASKDRTLRWFVFTDAGQVAAGSGMSCT
AGKPDSEVEDPCGWRFSAGIGLSWQSPLGPLQLSYARPLNSKSGDDTQAFQFQIGTGF
>SEQF2266_AEE66791.1 putative outer membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMSDFALNTSGSKRAKRGAGKLGVSLALAGALLFGSSAAVTAQAQGTKIGFVNTERILRESGPAKAAQSKIESEFKRRDD
ELQRLSSSLRSQAEKFDKDAPVLSESDRVKRQRELSNLDMDLQRKRREFQEDFNRRRNEEFSSIVTKANDAIKRIAEQEN
YDLIIQDAVTVNPRIDITDKVIQSLGR
>SEQF2266_AEE66792.1 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVLLDPENALALDVLLAGIDAQGLDWHLSAPDAADLPRIRGIGTLSSAGNEEISFLSNPRYQNQLATTRAAAVIVTPDV
AQARQEQGASGHVLVVCKHPYLLYARLAQWFERASRPAGPAGVHPSAVVDPSAEIDADVRVGAQCVIEAGARIGRGARLG
PGCVIGAGSTVGADSLLHPRVTLYAGVHVGERAIIHSGAVLGADGFGFAPDPTLGRGAWGKIPQLGEVRVGNDVEIGANT
TIDRGALDDTIVGDGVKLDNQIMVAHNVRIGAHTAIAACVGIAGSTTIGERCTIGGASMLSGHLAIADDVNISGGTAVTS
NIAKAGRYTGVYPYAEHSEWQRNAAVIQQLALLRRRLRALERE
>SEQF2266_AEE66793.1 (3R)-hydroxymyristoyl-ACP dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELDIKGIMDRLPHRYPMLLIDRVLEMVPGKSIVAIKNVSINEPFFTGHFPHHPVMPGVLIVEAMAQASALFSFTDENGG
LKCDGAKTAYYLVGIDGARFRKPVVPGDQLRLEVEAERLSRTICKYQGRALVDGQLVAEAKLMCAIRSLEE
>SEQF2266_AEE66794.1 UDP-N-acetylglucosamine acyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGNIHPTAVVDPAAQIDSSVVIGPYSVVGPGVSIAAGTEVGAHCVLDGVTSIGRDNRFYRFCSIGGMPQDKKYSGEPTR
LVIGDRNTVREFTTFNTGTVQDGGVTSIGDDNWIMAYVHIAHDCHIGNNTILANSVQLGGHVQVGDWAIVGGLTGVHQFA
KIGAHSMTGGNSSLMQDAPPFVLAAGNPCRPVGVNVEGLKRRGFSAAAISALRDAYKSIYRRGLSLDEGRAELRARQQAE
PDVAEHLQTMLDFLDASTRGIIRP
>SEQF2266_AEE66795.1 lipid-A-disaccharide synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLRIGMVAGEPSGDLLAGRIIAGLQARAPGVHCAGIGGPQMAARGFEAWHPMHALTVFGYIDAFKRIPSLLSTYGDVKR
RLLAEPPSVFVGIDAPDFNLRLEHQLRQAGTPTVHFVGPSIWAWRYERINKIRAAVSHMLVLFPFEEALYRKEGIPVTYV
GHPLAGVIPMQPDRAAARARLGIDADARVLAILPGSRSSEIRLLAPRFLQAAAELVRRDPRLQCVVPMVNPQRRAEFEAI
ATQHPVPGLRCVTAAEGQGETPVAWSVMEASNAVLVASGTATLETALYKRPMVISYVLSPWMRRIMAWKSGQQRPYLPWV
GLPNVLLRDFAVPELLQDEATPAALAEATWQALTDEAGAARIEARFTALHQDLLRDTPALAAQAILEVADGAA
>SEQF2266_AEE66796.1 ribonuclease HII [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEQPDLFGTLAPLPAIIAGVDEAGRGPLAGAVYAAAVILDPDRPVDGLADSKVLKAEQREALAVQIRAQALAWFVASASV
QEIDSLNILRATMLAMQRAVAGLAMAPELAMVDGNQAPKLRCAVQTVIKGDALVPAISAASILAKTARDADLLRLHALYP
QYGFDQHKGYGTPQHLSLLREHGPCPEHRRSFAPIKAYGAP
>SEQF2266_AEE66797.1 putative RNA methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKHLSSRDNPAVKALHKLAAGGGRRDGRILLDGVHLCQAWLAHQGTPLQALFDVARLDHPEIRALAGQVPPQHCLALDSR
LLQGLASVESGQGVVFVARAPEPALPERIDENCVLFDRIQDPGNVGTLLRTCAAAGVRRVLLAAGTAAAWSPKVLRSGQG
AHFALHIHEHLDLEAVLPRLDVPLVATTLARSGSLYDTDLPARCAWVFGHEGQGVAEALLRAAALRVHIPHESAAVESLN
VGAAAAICLFEQRRQRR
>SEQF2266_AEE66798.1 hypothetical protein BPTD_1419 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSTPIERAVYIVSDSTGITAETFSHSVLSQFDEVNFKPVRLPFIDTLDKAREVVARINRNALEAGVPPIVFSTLVNPEI
LALVRQSNGVFLDLFGTFVSHIEQALGLKSSHSIGRSHMAANSEKYRNRIDAINFSLAHDDGQFVNQLDQADVILLGVSR
CGKTPTSLYLAMQYAVKAANFPLTPDDFERGALPKTIAPYRGKLFGLSIQPERLAEVRNERRPNSHYARLEQCRYEVAEA
ERMMRREGISWLSTTTKSIEEIATTVLQEVGLERV
>SEQF2266_AEE66799.1 phosphoenolpyruvate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSYVVSFEQLRMTDVDSVGGKNASLGEMISQLAGAGVRVPGGFATTAQAFRDFLQASGLDKRIADRLATLNPEDVRELAS
AGAEIRQWVIDAPFSPEFEQAIRTAFAELDADGKGSFAVRSSATAEDLPDASFAGQQETFLNVVGVDDVLDKIRHVFASL
YNDRAISYRVHKGYAHAEVALSAGIQRMVRSDKGSAGVMFTIDTESGFQDVVFITSSYGLGETVVQGAVNPDEFYVFKPS
LERGNYPIVSRRIGSKLIKMEFDPERPEGRAVRTVDVPVSERNRYSLTDDEVIELARYAVIIEKHYQRPMDIEWGRDGVD
GKIYILQARPETVKSQQGVNDVQQRYRLKATGQVLVTGRAIGQKIGAGKVRVVADISEMDKVQAGDVLVTDMTDPNWEPV
MKRASAIITNRGGRTCHAAIIARELGIPAVVGCGDATDLLKDGQAVTASCAEGDEGRIYDGLIETEVEEVRRGEMPPIDV
KIMMNVGNPQLAFDFAQIPNAGVGLARLEFIINNNIGIHPKAVLDYPNVDGELKKAVESAARGHASPRAFFVEKLAEGVA
TIGAAFWPKPVIVRMSDFKSNEYRKLVGGSRYEPEEENPMLGLRGASRYIAADFEECFRMECEALKKVRDEMGLTNVEIM
VPFVRTLGQARKVVELLAAHGLARGENGLKLIMMCEVPSNAILAEQFLEYFDGFSIGSNDMTQLTLGLDRDSGMELLAAD
FDERDDAVKFMLRRAIKACLAANKYVGICGQGPSDHPDFAQWLKDEGILSMSLNPDTVVETWQQLAK
>SEQF2266_AEE66800.1 glutamine amidotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAALPVLILHTGNPAAALRAAHGSYAEMLRQAAGLDAAGTHVVASYKDEAPRAPGAYRAALITGSPAMVTDRAPWSEAA
ADWLRQAAGAGLPMFGICYGHQLLAHALGGVVGDNPAGRELGTLPVELLPAAATDPLLAGLPAAFDAQMMHEQAVLAAPP
GATVLARSAQDAHQILRLAPRIYTAQFHPEFTPGFVAAHLRHHAALYAAHGLDVEGLARAAGPTPLAASLVRRFLACCA
>SEQF2266_AEE66801.1 hypothetical protein BPTD_1422 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWIWFGLAAVALIGEVGSGTFYLLLVALGLAAGGIAAWLGADLAWQLVACGLVALLGLLALRRTGVLKKREVNAARNADV
NLDIGQSVMVDAWSDAGTTQVYYRGAQWQAELAHGQPRQAGRHIIAEIRGTRLVLAPAPAA
>SEQF2266_AEE66802.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66803.1 hypothetical protein BPTD_1424 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDVSTVVLIVIVILALMIVVKAIAIVPQQHAWVVERLGKFDRVLSPGAGFVIPFIERVSYKHSLKEIPLDVPSQVCITR
DNTQLQVDGVLYFQVTDPMRASYGSSNYISAITQLAQTTLRSVIGKLELDRTFEEREFINSTIVASLDEAALNWGVKVLR
YEIKDLTPPNEILRAMQAQITAEREKRALIAASEGRRQEQINIATGEREAAIARSEGEKQAQINQAQGEAAAVLAIAEAT
AKAIEQVGEAVRQPGGMEAVNLKVAERYVDAFSNVAKEGNTLILPSNLSDVGGLIASAMTIVKSTKSA
>SEQF2266_AEE66804.1 hypothetical protein BPTD_1425 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAPVTLLVISTLSSLVTQGVLGSLLRSGIAGIRELMWANVLVLCSLLLFTLQANPAMPPWLAIQAPNVLISSGVVLFCA
GVFRFMQQRPPWRLLLLGLALSIGANIWFHYVDPSVNARVVTASGLHALLWGGSAWTIYRNMPLRRSRYSYWFAGVTATV
AALGHALRTAVYGLQIEQTQGLLQSSVWNVAFLAIGVLVMPSMTLGMIMMIHDRMLAEREREANQDFLTGLLSRKAWWRE
GERLCARALRTGRPLTLLALDIDRFKQVNDQHGHAAGDVVLRHFGSLATALLRSGDVIGRLGGEEFVALLPDTDGDTGVS
VAERLLASVRATPCSHGGKALTYTFSGGVAQYRAGDTLPVLVERADAALYAAKQAGRDRIRNRAG
>SEQF2266_AEE66805.1 SsrA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIIDNRKATHDYFIEDRYEAGMVLEGWEVKAIRDGRVQLKESYVIVRDGEIYLLGMHVSPLPTASTHIRPDATRTRKLL
LKAEEIRKLIGKVEQRGYTLVPLNLHYKNGRIKLDFALGRGKKLYDKRDTAREKDWQREKERVLKHDTRVNQRDS
>SEQF2266_AEE66806.1 hypothetical protein BPTD_1427 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHKVQRSVLVPYSAAQMFDLVADVEKYPEFMPWCGGAEVHSRSEHGMQASILISFAGLKQRFSTRNTHDYPQRIDLELVD
GPFSMLVGHWVFQPLAEDACKVLFTLEYAFSNRALEMVVGPVFNRIAASFIDSFTKRAQAKYGE
>SEQF2266_AEE66807.1 hypothetical protein BPTD_1428 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVCHACPDGAWQRAVTLPAGATVADAVAASGFAAAHRGQDPWAHGVGVFGKAQAADAPLADGDRVEIYRGLSFDPKESR
RRRAEHRRALAARGGKARPAGLL
>SEQF2266_AEE66808.1 acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDFELTDEQRAFAQAARDYAQGELAPHAARWDAEGIFPREAFARAGELGFCAIYASEEIGGLGLPRLDATLVFEEMAAVD
PSTTAFLTIHNMATWMVGQWARPAVREQWGPLLASGEKLASYCLTEPNAGSDAGSLATRAERQGDDYVLNGAKAFISGGG
DTDLLVVMARTGGDGPGGVSAFAVPADAAGIAYGRKEEKMGWNSQSTRPITFEQVRVPASHMLGEPGEGFKIAMKGLDGG
RINIGTCSVGAAQGAMDAARRYMDERRQFNRKLAQFQALQFKLADMATHLVAARQMVRLAACKLDAGSADASTYCAMAKR
FATDMGFQICLDAQQIHGGYGYLRDYPLERLVRDTRVHQILEGTNEIMRVIVARQLLEKGADIR
>SEQF2266_AEE66809.1 enoly-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPVLFEERIADNGVRLGVATLNAPQTLNGLSLEMVELLDARLRAWAADAAVAMVILQGAGEKAFCAGGDLHGLYRSMR
ENTGGDPWANTHARRFFEHEYRLDYLIHTYPKPVLCWGHGIVMGGGVGLMMGASHRVVSETTRMAMPEITIGLFPDVGGS
WLLNRMPGRTGLFLALTGAHVNASDAFFAGLADFRLDSAQWPDFCASLLSLPWAGQPGGPGTGNAAPRSINDGLLRQALL
AHEPATQLEPGPLRQHSFLVNSLCSGKRLDDIYAEIAELKDHADPWLARAAATMLAGSPGSARLAYALQQHTRLRSLADV
FRIEYVAALACAAHGDFAEGIRALLVDKDRQPRWNPATLSEASDDWVRKFFDEPWPAGQPHPLADLGHGA
>SEQF2266_AEE66810.1 3-hydroxyisobutyrate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSIAFIGLGNMGAPMALNLVKAGHDLTVFDLVPAAVKTLTDAGARAAGSAAEAVQGAELVISMLPASKHVEGLYLGQDL
LASIGASALVIECSTIAPDSARKVAAAAQARGIAMIDAPVSGGTGGAAAGTLTFIVGGEAPALERARPVLASMGKNIFHA
GGAGAGQVAKICNNMLLGILMAGTSEALALGVANGLDPKVLSDIISKSSGRNWATELYNPWPGVMEHAPASKGYAGGFGV
DLMLKDLGLAAEAALGTRSSIPLGELARNLYSLHSQGGSGGLDFSSIVNLYSPGERN
>SEQF2266_AEE66811.1 hypothetical protein BPTD_1432 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDTEAFEAARQRVHDNFARQSVMALIGARLGAVEPGEVEIALPYRADLCQQNGFLHAGISTTIADSAGGYAAYTLFGPG
EDVLTSEFKMNFLAPADGEHFVASGKVLKPGRRLSICQVELRACRGERSTLCLVGLMTAVRVTPR
>SEQF2266_AEE66812.1 hypothetical protein BPTD_1433 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPARSHHRIFRSGWLRAAVLGANDGIVSTASLIAGVAAAQASYAAILTSGLAGLVAGALSMAAGEYVSVKSQADIEAADL
RLEQSSLKRNSREELEELTGIYVERGLSPDLAGQVARQLTRHNALDAHARDELGISVHNRAQPVQAALASAASFAVGAAL
PLAIAMAAPLAQLMPVVIAGSVAGLGILGAVAARAGGAPVGPAAVRVVLLGAAAMALTAGVGALFGVAV
>SEQF2266_AEE66813.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVHYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF2266_AEE66814.1 transaldolase B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSQLEALRRHTVVVADTGDFEAMRALRPTDATTNPSLILKAVQQEAYRPLLVQTARAHQGASPAEITDRLLVAFGRQIL
DIVPGRVSTEVDARLSFDTRATVERARGLIALYQAAGVPRERVLIKIASTWEGIQAARVLQAEGIRCNLTLLFCLPQAAA
CADAGVQLISPFVGRIYDWHKKNAGAEWVEDARRGANDPGVQSVSRIYRYYKRFGIETEIMGASFRNVDQILALAGCDLL
TISPELLTRLAQTEGEVPAALSPQAGHDDADAVRLDGGEVAFRTQLNEDAMASEKLSEGIRLFVADARKLDALIESHGAA
>SEQF2266_AEE66815.1 carbamoyl phosphate synthase small subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADGTIFRGVSIGVPGHTVAEVVFNTSMTGYQEILTDPSYAGQTVMLTYPHIGNTGVNPEDVEANRVYAAGLVVRDCPAR
VSNFRATQSLPEYLNAQGIVAIAGIDTRKLTRILRESGAQGSCILVGEDAERAVELARGFPGMSGQDLAKVVSIKERADW
TQGTWELGSGYTQPAQDRFHVVAYDYGVKSNILRLLADRGCRVTLVPAQTTAEEAFKLQPDGVFLSNGPGDPEPCDYAVD
ATRAFLERKLPVFGICLGHQLMGLALGGKTVKMKTGHHGANHPVQDVQSGRVFITSQNHGFAVDAATLPANTRVTHISLF
DGTLQGFELTDRPAFCFQGHPEASPGPHDIIVLFDKFISLMAGQK
>SEQF2266_AEE66816.1 carbamoyl phosphate synthase large subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPKRTDLKSILIIGAGPIIIGQACEFDYSGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIER
EKPDALLPTMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGVAHSMDEAWEVQR
RIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPTKELLIEESLLGWKEFEMEVVRDKADNCIIVCS
IENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMNPRVSRSSALASK
ATGFPIAKVAARLAVGYTLDELRNEITGGATPASFEPTIDYVVTKVPRFAFEKFPQADARLTTQMKSVGEVMAMGRTFQE
SFQKALRGLEVGVDGLNQKTTDREKLQIELGEPGPERIWYVGDAFAQGFTLDEVHGLTRIDPWFLAQIKEIVDIELALEQ
KTLADLDYATLWELKRRGFSDRRLAFLLDSSESEVRKLRHQLNVRPVYKRVDTCAAEFATNTAYMYSTYEEECESQPTDR
KKIIVLGGGPNRIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMI
VQYGGQTPLKLARALEANGVSIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYV
LGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAGVHSGDSACSLPPY
SLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAIQGGDVYVLEVNPRASRTVPYVSKATGLQLAKIAARAMAGRTLADQGI
TREVVPPYFSVKEAVFPFVKFPGVDTILGPEMKSTGEVMGVGNSFGEAFVKSQLAAGVRLPDSGTVFISVRNQDKPRAVE
VARGLHNLGFKLVATRGTAAEIEAAGIPVQVVNKVTEGRPHIVDMVKNGEVSLVINTVEERRNAIADSRTIRTQALANRI
TFFTTIAGARAAVEGMQFMRQGLGLQVYPLQELHAGLTAQ
>SEQF2266_AEE66817.1 phosphoglycerate mutase 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEIWFIRHGETDWNRQRRLQGWQDIPLNESGREQARLLAERLRDTASEHPFAALYSSDLKRAHDTAASLSAALQLRVRT
EPGIRERGFGVLEGLEMENLEQQAPQAAQAWRSRDPLRALEGGETLGQFQARIIATVDDLAARHAGERILAVTHGGALDI
IWRHASGVPLDAPRYAALLNVSINRVAIAQRKWEVLGWGDVEHIGAETGNDVTP
>SEQF2266_AEE66818.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEIYQIRAFVTVARLGNLTKAAEALSLTQPAVTAQLKALEQSLGVALFDRAAGRLSLAKAGEALLPTAEALLVLGAQLKS
EARQLQGQLQGVIDLGVPSEQPDFLRLGELAAALRQHLPLVELKTHVLPSTALLEQVGTARLAGALTIVAHPPRGVTWHA
LRSVRYRIALPASLADTLKRAGWRDIAQLPWLDGPSGSHLHLLLRDMFERHGLAPRVVMQNDDQSNLDALVRAGAGCALL
REETALAGAAAGDFIVWGQARADATLGFIAPPEQAGEPMLVALISIIQKIWKPGAAVAT
>SEQF2266_AEE66819.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKVSVECRNIRLSYGRNEVLKDISIHIEPGEFFALLGPSGSGKSTLLRLIAGFNRQSHGQLLVDGRDIGATPPWDRNIG
MVFQNYALWPHMTVWDNVAFGLVERRLPRAEIRDKVAAALELVGLADFGRRRPNQLSGGQQQRVALARTIVIEPQVLLLD
EPLSNLDKKLRVQMRQDLLSLQRRLGITTIFVTHDQEEAMTTADRMAVLDHGVVQQIGAPSTLFDYPVNRFVANFVGTMN
VLEGEVRERSRGGVVLAVDGVGELHLPVNGDAPQAGRLAASFRPHTVLIEMADGTGDARYVWLPGVVESSEFLGEFTRYQ
VQVGEQRLTADQHHLAGLSPFPVGAPVAVGLEPTQIRLLAA
>SEQF2266_AEE66820.1 ABC transporter permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSTGTFRLPAGPALAALLALFLVFPVGTVFYTAFVNADGSFTLGHFGAFFNQPLMKEAFFNSLYVAGWSSLLASLIAVP
LAYFTVRFEFRGALLIQTLGVLPLIMPPFVGAVAMQLIFGRSGSVNLLLDDWLGITLPFMDGLNGVIFVESLHYFPFILM
NLVVALRNIDGSMEEAAFNLGSRGFRLFCRIIFPLALPGYLAGTSLVFVKVFDDLGTPLVLGTTNMLAPQAYLRITQVGL
EDPLGYVISVIMIGFSILALWLSARVLKGKDYSTLQKGGNAIHKRRLRPVESMLAYAWIGAVLLLVLSPHLGVLLLSLAS
VWSYAPLPDGYTLAHYTAVFTESQGMIANTLLYCGLAAGVDVVLGTAIAYLMLRTRLPARQWLDFIASAALAIPGIVLAI
GYLRTFRGVEIPGTGVLLTSSWVLIMIAYSVRRLPYALRSCVAALQQINVSLEEAAESLGASRLRTIRRIVVPLMAGGML
AGFVTSFITAAVELSATIMLVTRDSQAPMSYGIYLYMQSAAGRGPGAALGVLAVVAVGIGTYVSHLLVERASARQRPARS
GESS
>SEQF2266_AEE66821.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66822.1 chorismate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGNTLGTLFCVTNFGESHGPAIGCVVDGCPPGLPLEAADIQAELDRRRPGTSRHVTQRQEADQVEILSGVYEGVTTGTP
IGLLIRNTDARSKDYSNIADTFRPGHADFAYWRKYGVRDPRGGGRSSARLTAPTVAAGAIAKKWLASQFGVRVRGYMSQL
GPIAIPFSSWDDVPGNAFYAPNAAVVPELEAYMDQLRRDGDSVGARIEVVAEGLPAGWGEPIYDRLDADIAHAMMGLNAV
KGVSLGAGFESIAQRGSEHGDEITPEGFASNHAGGVLGGISTGQPITVSLAIKPTSSIRVERRSVNRAGEPVMVQTLGRH
DPCVGIRATPIAEALLALVLIDHALRQRAQCGG
>SEQF2266_AEE66823.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPVIQTFLRAAAVAGLALLAGCAGVSTTQSGAIGVDRTQYMSSLVPEQALVQEAGQQYAEIVQEARAKGLLDRDPAQLS
RVRAISQRLIAQTGVFRADAANWPWEVHVLSVDEVNAWCMPGGKIAVYTGLLAHIKPTDDELAAVLGHEIAHALREHARE
RVSQQMATSIGLSVLSMATGSPGASDLGGKLTEVMFTLPNSRTHETEADRMGVELAARAGFDPRAAVTLWQKMGAADGNA
PPEFLSTHPSASTRIGELQQALQKVLPLYEQARGQAAK
>SEQF2266_AEE66824.1 molybdopterin-guanine dinucleotide biosynthesis protein B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRIIGFAGWSGAGKTQLLSRLIPCLKARGHSVSTLKHAHHTFDIDTPGKDSFRHREAGATEVLIASSARWALMHELRDE
PEPELGELLARMCPVDFILVEGFKRNAHIKIEVHRHANGKPWLFPDDPSIGAIACDAAPPHGTLPRVALDDYDAVADLVE
RLAWPLDTTIARLAAPVSPA
>SEQF2266_AEE66825.1 molybdopterin biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNHAPTPSLEEIASCVNGYDPDALPISQAREFIDRLVPRLNAVEWLPLRSALGRVLAHDIVSTLNVPAHDNSAMDGYAFA
GAELAGGADTPLRVVGSGLAGDNYQGTVGPGQCVRIMTGAVMPDGLDTVIPQEFVRQDGDRIVVPAGAVRPGDNRRLAGE
DLALGENALTAGRVLRPADIGLLASLAQAEVPVVRRLRVAFFSTGDELRSIGEPLDPGCVYDSNRYTIWSMLQRLGVEVL
DLGVVRDDPHALETAFSAAADNADVVITSGGVSVGEADYTKKVMAKLGDVLFWKIAMRPGRPLAIGRIHSNGRDAILFGL
PGNPVAVMVTFYALVRDALLTMSGATAQPMPWLRCVAAQPIRKKPGRTEYQRAIVTPAPGGGWQAAITGSQGSGILRSMS
QANGLLVLHHDQGNIAAGEPVDVLPFDGVI
>SEQF2266_AEE66826.1 molybdopterin-guanine dinucleotide biosynthesis protein A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDKNDITGLILAGGRASRMGSVDKGLQNFHGMPLAMHTLLRLGPQVGDIMINANRNLAAYEAMGAPVWPDALPDFPGPL
AGFAAGLERCETPYMVTAPCDTPNFPADMVSRLADALIAEGAQIAMAATTADGALRTQPVFCLMRIDLLDSLLEFLHSGQ
RKTEIWANQHRCAIVRFDDAQAFAGANTLAELRQLQS
>SEQF2266_AEE66827.1 putative iron sulfur binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVASESILQALQTVIDPNTGKDLVTTRAIRNLEVNGADVTFDAQLGYPAKSQIPALRRALIAAARGVAGVDNVSVNMQSV
IETHAVPRGIALLPNVKNVIAVASGKGGVGKSTTAVNLALALAAEGARVGLLDADIYGPSQAQMMGIEGRPQSEDGKTME
PLENYGVQVMSIGFLVDADEAMIWRGPMAVQALEQLLRQTNWKNLDYLVIDMPPGTGDIHLTLSQKVPVTGAVIVTTPQD
IALLDARKGVKMFEKVGVPIVGVVENMAVHVCSQCGHAEHIFGQGGGQRMAQDYGLAYLGALPLDINIRQQADGGRPSVV
ADPDGEVAGLYKDVARQVAVAVAAMGKDYSSKFSSISISRAPAGG
>SEQF2266_AEE66828.1 hypothetical protein BPTD_1451 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDTLPLSMEVAVVMRKERIVGEMSRWQDSRWVLEDVVPDEPGFGRAPRMLYHDENQQRWLHPGLTVRLFKDDAEGYLLN
VSAPAPCWFVLWRMEEEPGVASEPLARPEIVTLSYHDAGRWLDAQETVEQIPAPAYIVQWLHAFVQAHYVPEPKRRRRPV
SFQPLQDRFGNPASVSTTKKRGGGEP
>SEQF2266_AEE66829.1 hypothetical protein BPTD_1452 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQDPAGFIGRWSRRKSEARQQAETAADPAAGVAQASLADTPFAGAPAVADRPEETPERADAAPVQAPGPAADAETDLPL
PTLDDVRALTLDSDFSRFVAGGVSPDVKNAALKKLFTDPHYNVMDGLDVYIDDYTQLEGLPQETVRRMASAKVFKLFEED
EPASAQGEPADGACGPGQQAPGAMAEPDAAPAVPASAPDAIQSALPRDDAAGPADGPLPDAEPRRD
>SEQF2266_AEE66830.1 putative iron-sulfur binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTLICDCNRTMPLQPEALGQALGETLTLHSTLCRREAGAFQAAIRDGQDVVVACTQEKRLFGELGGATQGAVSPVRFVN
IRETGGWSRDAAQAMPKLAALLAAAHLPEPDPVATVTYKSGGRLLIIGSLDQAEQAAALLDDVLDVTLFGQGPGRAGGAQ
ERRYPVLSGRIDSLQGWLGAFELRWTRGNPIDLDLCTRCNACISACPDGAIGLDYQVDTARCTSHRACEQACTVAGAIDF
SRSPENFTDQYDLVLDLGGTPLFTQHAPPQGYFAWGGQAPATLLRLRELVGEFEKPKFFDYRQQLCAHSRNETVGCRACI
DICSARAISSDSHHQRIVVNPSLCVGCGACTTVCPSGALTYTYPRATDQGSKLRTLLATYAKAGGQDAMLLLHSQQEGAR
LVEQLGRQAALKQADGVPANVIPMALWHTASVGLDLWLSAVAFGARHIAVLTTAEEAPQYLEGLQAQFAQAQAILNGLGY
AGIHLSLVPADTPQALDAALRQLAPAQGPAVAARHAVVQEKRSTLDLALDHLVAHAPAPAPESIALPAGAPGAGAPFGTV
AVDSDACTLCMSCVSACPSNALLDNPQSPQLRMVEKNCVQCGLCATTCPENAITLVPRLLLAPRRREAVVLNESAPFHCV
RCNKAFGTQKGVEAMLGRLGGHAMFQGAALERLKMCGDCRVIDLYSAENETRITDL
>SEQF2266_AEE66831.1 hypothetical protein BPTD_1454 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNVSVTFASIAAPGFDEEVARAEIYGLLAQLYYAPPPSDLLAQLRAAPRQAPDQGGFLEASWQALVACAAEMGDDAVRAE
YDALFGGVGKPDIYLFASHYLTGFLNEKPLVGLRDDLAALGLRRDAAMSETEDHIAYLCEVMRYLIAGDDVAVANLTQQR
QFHARHLRPWIADLCDAIAAHPAARFYGALAEFTRAFFSVEAQAFDMMA
>SEQF2266_AEE66832.1 formate dehydrogenase large subunit precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQALPTMDRRTFLRRSGLGVGAGLAATQLSLVKRAEAAEGDGKVAIGNTKIEVRRTVCTHCSVGCAVDAVVENGVWVRQ
EPVFDSPINLGAHCAKGASVREHGHGEHRLRYPMKLVNGKYQRISWDTAYEEITAKLMQLRKESGPDSVYWIGSSKHNNE
QSYLLRKFVSFWGSNNCDHQARICHSTTVAGVANTWGYGAMTNSYNDMQNSKVALYIGSNAAEAHPVSMLHMLHAKETGC
KMIVVDPRFTRTAAKADQYVRIRSGTDIPFLFGLLYHIFKNGWEDQAYIDARVYGMDEVKADILAKWSPDKVEEACGVDE
ATMYSVAKTMHENRPGTLVWCMGQTQHSIGNAMVRASCIVQLALGNVGKSGGGANIFRGHDNVQGATDVGPNPDSLPGYY
GLAEGSWKHFANTWGVDYEWIKDRYASPAMMTKPGITVSRWIDGVLENPDLIDQDTNLRAVFYWGHAPNSQTRGLEMKRA
MDKLDLLVVVDPYPSATAAMAAMPGKAEDLNPNRAVYLLPAATQFETNGSCTASNRSLQWREKVIDPLWESRTDHMIMHQ
LAEKLGFGKELSKNYKMQKVKGMDEPVVEDILREINASVWAIGYTGQSPERLKAHMRNMHVFDVKTLRAKGGKDAETGYD
LTGDYFGLPWPCWGNPSLKHPGTANLYDTSLHVMDGSGNFRANFGVERNGVNLLAADGSHSKGADLTTGYPEFDHVLLKK
LGWWEDLTPEEQKAAEGKNWKTDPSGGIIRVTMKVHGCHPFGNARARAVVWNFPDAIPQHREPIYGTRPDLVAKYPTHND
LKTFWRLPTLYTSLQQKNVAEKLYEKFPIILTSGRLVEYEGGGEETRSNPWLAELQQESFVELNPKAAADRGIRNGDRVW
VLTPTGARLNVQALVTERVGPDTAFMPFHFSGHWQGVDMLASYPEGAAPIVRGEAVNTGTTYGYDSVTMMQETKTTICNI
EKA
>SEQF2266_AEE66833.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTNPRLLLIAAAAVFGLAACTEKPQELHSGVVGKPAYDGTGSNFVAPGWKQGDKNSWQQELKVRAQRGQNEYTRVN
>SEQF2266_AEE66834.1 formate dehydrogenase subunit C precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRSLFAALLASALLATAGAQTAAPSADAPAMGGIQSANIFEVKPDASEQPGYAEQTNAERAKVQPGNNAPMWRQVNSGQ
PGYSSLPASEAPEAGVLIQRFVQYPGSQYTTAGEAWRQVRNNWLIPYGGGLLLIVLVAIALFFLAKGPMKLREAETGRRI
ERFTYFERAAHWVNATAFVILALTGIVIAFGKFFLLPIMGSAAFGWMTWLLKTVHNFVGPVFAVSLLVVILTFIKDNLPR
RDDLIWLRKGGGLITGAHVPSHRFNAGEKIMFWVGMLFLGALAVASGLFLDQVFPGLSYVRGNMQIAHMVHAASVVLMMC
MIMGHIYLGTIGMRGAFKAMKTGYVDETWAREHHELWYDDIKAGKIPAQRTPDKSAKRLTRPAGA
>SEQF2266_AEE66835.1 hypothetical protein BPTD_1459 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKIAALIIALAAAPALAKLPPPTPEAAAKAKETAAKAAWSGKMDAFRLCRVQDEVAATYFERAKAAGKTTRAPMATPEC
KDPGPFVYNVEDKPREAAGAHSPADTAAKPPSSPAPAAEQKPGQ
>SEQF2266_AEE66836.1 hypothetical protein BPTD_1460 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRHIEISYSLGPSDPRPALLRNALMDLLSAVREHGSISAAAKALDLSYRHVWGELKKWEQTLGRTLIVWDKGQPARLNEF
GEKLLWAERQAQARLAPQINALRADLERAFAVAFDDAAHVVPLYASHDNALQALREHAVASAKLHLDIRFTGSVDAISAL
NEGRCVMAGFHTREAPEPGSLAERTYKPMLQPGLHKIIGFAQRSQGLIVARGNPHGITSLADLAASGVRYVNRALGTGTR
VLFDELLERAGLKPAAIAGYERTEPSHAAVAHAIVSGSADAGLGIEPAAHRERLDFIPLVRENYFLVCLKSTLDQPSTQA
LLSILRSPAWQATLAAIPGYAPAQTGQVLSMRRVLPWWDFARKKVRRTRPA
>SEQF2266_AEE66837.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVLFDLRGADVYYGPVHALRAAELRICAGEQVALVGANGSGKSTLLRLLHGLVTPRAGQARCAARARQAMVFQQPYMLR
TSAQNNVALALWLRGMRWRDARARALHALERVELIELAGRNAKSMSGGQQQRLALARAWALEPEVLLLDEPTASLDPHAK
RDVELLMEQFARPRDGLAPAMIFSSHNLGQVKRLARRVIYLERGRILADLPVDQFFNGPLPEAAALFVKGERIP
>SEQF2266_AEE66838.1 hypothetical protein BPTD_1463 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKILNAIRRGLALAGLATVLAAPLAARAETIVMASTTSTEQSGLFGHLLPAFKKASGIDIKVVAQGTGQALDMARRGDAD
VLFVHDQVAEEKFVADGYAVKRYPVMYNDFILVGPAKDPAGVKGNDIVAALGKLAKDNADFISRGDKSGTHAAELRFWKQ
TGSDSKGSGYKECGCGMGPALNMGSSMNAYVLSDRGTWLSFKNPGELKILVEGDKRLFNQYGVMVVNPAKFPHVKAKAAQ
QFVDWVTSKAGQDAIASYQVNGQQLFFPNADK
>SEQF2266_AEE66839.1 isopropylmalate isomerase large subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQTLYDKLWDAHVVHQESDGTCMLYIDRHLLHEVTSPQAFEGLALAGRQPWRVGANLAVADHNVPTLNRAQGIEDPISR
LQVDTLDDNCAKYGITEFRMNDLRQGIVHVIGPEQGATLPGMTVVCGDSHTSTHGALGALAFGIGTSEVEHVLATQTLLM
KKAKSMQINVEGELPFGCTAKDVVLHIIGIIGTAGGTGHAIEFSGSTIRGLSVEGRMTVCNMAIEAGARSGMVAVDDKTI
DYFRGRPFAPVGVLWDQAVGYWRTLHSDAGARFDRVINVDARDIKPQVTWGTSPEMVLPVDGRVPDPDREKDDVRRSGME
RALEYMGLKPNTPLVDIRVDRVFIGSCTNSRIEDLRAAAVVARGKRVAANVRQAMVVPGSGLVKQQAEREGLDKIFIEAG
FEWREPGCSMCLAMNADRLEPGERCASTSNRNFEGRQGQGGRTHLVSPAMAAAAAVAGHFVDVRSFR
>SEQF2266_AEE66840.1 isopropylmalate isomerase small subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAFTQHEGLVALLDRENVDTDLIIPKQFLKSIKRAGFGPNLFDELRYLDHGEPGMDNSKRPLNSDFVLNQPRYQGASVL
LARKNFGCGSSREHAPWALTQYGFRAIIAPSYADIFFNNSFKNGLLPIVLGELEVARLFDEVKAFPGFKLNIDLERQVVI
APDGRELGFDIEPFRKYCLLNGLDDIGLTLRQADKIRAFEAERLARHPWLESRPVA
>SEQF2266_AEE66841.1 3-isopropylmalate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHQIAVLPGDGIGPEIVEQAERVLKALDLPLELRQAPVGGAAFDQFEHPLPPATLELAQGSHAVLFGAVGDWKYDTLPR
EFRPEQAILGLRKALGLFANLRPAILYPELASASSLKPEIVSGLDILIIRELTGDIYFGTPRGVRTAADGAFAGEREGYD
TMRYAESEVRRIARIGFESARKRNKKLCSVDKANVLETSQFWRDLVIEVSRDYLDVELSHMYVDNAAMQLVRNPRQFDVI
VTGNLFGDILSDEAAMLTGSIGMLPSASLNAAGQGLYEPSHGSAPDIAGQGIANPLATILSAAMLLRYSLNLAPQADRVE
AAVRKVLADGLRTADIHEAGTTKVSTSQMGDAVLKALG
>SEQF2266_AEE66842.1 aspartate-semialdehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQAVGLVGWRGMVGSVLMQRMRDENDFALIEPVFFSTSNAGGAAPAWAEGAGSLQNAYDIDALKKLPIIVTAQGGDYTS
EVYPKLRGAGWQGIWIDAASTLRMADDAIIVLDPVNRPVIDAALKRGVRNFVGGNCTVSCMLMGLAGLFNNDLVEWMSSM
TYQAASGGGAQHMRELLTQFGLLNQAVKPLLDDPAAAILDIDRGVLARQQDPSLPQEHFGVPLGGNLIPWIDKDLGDGMS
REEWKAEAETNKILGRGAAFGTPATPIDGLCVRIGAMRCHSQALTIKLKRDVPLDEIEDLIAAGTQWAKVVPNTKEDTVK
ALTPVAVTGTLDIPVGRLRKLSMGLQYLGAFTVGDQLLWGAAEPLRRMLRIALAEA
>SEQF2266_AEE66843.1 hypothetical protein BPTD_1468 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSTLRPLQPARRSQALSWALVLALGAGATGAEAARLGHARVVSPPGAALQVVVPLLELSADDLATLQVSLADEAAWRQA
GLTPPVPLSSATVRIEPGADASRRNVRISSSQPPAGNAVDVLLDLRSGAGQRQVQVTVLVPPRGSAARVAPASVGTPAPA
GQASAGSIDVRRGDTLFGIAQRNAVAGASVYQMLVALWRANPEAFIQNNMNLVRAGETLDIPDAATVRAIDPAEARRIFA
QHAEAFARYRGRAGALAAGGAAVSGTGEAGAGRLGSAAQAEAAGAATAQDRLRLSSAQGGANAQADAAGDARASSGRALD
DAQQRVEKLQSNVDALSQAAGAGKTASGEGSAPANASAGAGGQPGADGKAGADGKPGSDGKPGADGKPGADGKPGGAAAG
AGAATQAGAASAGSTGGNGAAGSAGAGTAGSGPAAAAAKGESSQGGMPGWLADNLLAIVTAVLALIVFIVAWALRRAGAR
RDDDDEASAAYPEPTLDTAALTRKLDSISLDLDEPPTDEPRPGGKRT
>SEQF2266_AEE66844.1 tRNA pseudouridine synthase A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRIALGLAYDGSAWQGWQTQPHGVTVQDQVEAALASFAGGGGPVATVCAGRTDTGVHAAMQVIHLDTDLQRRDESWVRG
VNAFLPPSIVVQWARPVSEAFHARFSARSRTYVYLLWRGRVRPALWAGRAGWAFQPLDVPAMRAAARALLGEHDFSSFRS
SQCQARHPVRTLHRLDIDERGAFLVFTLRANAFLHHMVRNLIGALLQVGQGREPVAWMDALLCARDRRLGAPTFMPDGLY
LSAIEYPAEFGFDELDGGITLLSPFTGALG
>SEQF2266_AEE66845.1 putative periplasmic solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRRSFLKQATLGAAAGGAALAAPPLAQDSPTIHWRLASSFPRSADAIFTGGENLAKYVSEATDGKFSIRAFPAGEIVPA
LQVLDAVQNGTIECGHTASYYYFGKDPALCFDGAVPFGLNTRQMNAWMRHGDGLKLTRELFQKYNVVNFPCGYTGTQMGG
WFRNEIKSVDDLKGLKFRASAFAGAVLSRLGVVPQQIAGGDIYPALEKGTIDAAEWIGPYDDEKLGFHKVAKNYYFPGWW
EGTLQVSLYVNQDVYNQLPKHYQAALAQAAAAATNDMIAKYDAENPAALRRLVAEGAQLKAFPKSVMEACYTQAQAVYKE
FSEKDPMFKRVYDSMVAFRDNEIPWFRVAEGSYDGFMATVARGK
>SEQF2266_AEE66846.1 hypothetical protein BPTD_1471 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKALLALSRGIDALNLRVGRAVTWVTLLVVLVSAGNAVVRKVFHSSSNAWLELQWYMFGAMFLLTAGYTLLKNEHVRVDI
LSSRLPRHKQIWIEIFGVVFFLLPACTLIMVLSWPVFMDSYLSGEQSSNSGGLIRWPVKLLIPVGFALLVLAGLSHLIKC
IGFLRGQCPDPTAREGSKSAEELLAEEIAREALEREASVQEQRNNHEGR
>SEQF2266_AEE66847.1 hypothetical protein BPTD_1472 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFLIANLAPIMFATLVLFLLLGFPVAFALAANGILYGLVGIELDLLSPALFQALPQRVFGIISNDTLLAVPFFTLMGLV
LERSGMAEDLLETIGQVFGPLRGGLAIAVVFVGAMLAATTGVVSASVISMGLISLPIMLRYGYDRRLASGVIAASGTLSQ
IIPPSLVLIILADQLGRSIGDMYRAAMVPGFVLAGAYIAYVVIVSLVKPSAAPALPEEARRFREPNGSRGGRSLLVLMLI
SSLSAYVLGQWLENDTAPVDEQVVVSLLLWGLTAFVIAIANKVFRLKMLSALAERVTFVMIPPLFLIFLVLGTIFIGVAT
PTEGGAMGAVGAIIMALIRRRLTLDLLKQAMDTTTKLSCFVVFILVGSTVFGLTFRGVNGDLWVEHLLIGLPGGEWGFLI
VVSVLTFVLAFFLDFFELAFIIVPLLGPVADKMGIDLIWFGIILAVNMQTSFMHPPFGFALFYLRSVAPKDAYKDKITGK
IIQPVTTGQIYWGSVPFIVIQLFMVAAVMLFPGMVMHYKGGQSTVDPASVKIEIESNYGTNIYGDESSDPGAAFK
>SEQF2266_AEE66848.1 N-(5-phosphoribosyl)anthranilate isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTRVKICGLTREQDIASAVQAGADAIGFVFYPASKRHVDPARAAQLRREVPAFVDVVALFVNPRPDEVQAVLDHVAPDL
LQFHGDETPQDCGRYGRRYLRAFRAGAPGLDSAAGLAAACRQYADAAGWLFDSYSAGYGGSGQGFDHGLLAGVQADPASC
AIVLAGGLHPGNVADAVRAVRPWAVDVSSGVEDAPGIKSAGKIRQLMAAIKSVDQVAR
>SEQF2266_AEE66849.1 hypothetical protein BPTD_1474 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCLGMAGEHMAPNSKHLSLHMPVDFIDALAQAESIDEILKVVATWFMEMFVADRASITFPVNDSHLRVVALEGNRVIDVD
APVPIHGTMVGRVFSRGQAEICDDLAASTDLDCLILASRGLGSCLDAPLRSGRDCYGTINVGRRDRNGFTLADMRKIEAL
AMWIATLIRVHRQVERLTHLSRTDPLTQIMNRRAFTESFQTRRLEGERRRAEVGTGLGFAVVDIDHFKQINDTYGHDVGD
VVLAFVGKMMNEFFRESDCVARFGGEEFCVLMQDVDEGGMQRLLERFRVALGDCVVTHSAGTVSITASIGAVLVKTSVAG
IDRAFRSADLALYKAKADGRNRVRIAPSAEQSHAGNPANRLCYPG
>SEQF2266_AEE66850.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66851.1 hypothetical protein BPTD_1477 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKHHQASGTLCVQWLCPGPAQQRALLELALRCLRDDRLEIRRALRQRDNATVRERLHRAKGAICTLWPDPETLARLEAV
HRQLPRRGSQLWSQAAALESRLLQLEQAMLASLDALGGDPMAQEQQPAPP
>SEQF2266_AEE66852.1 two-component response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLSRPSRRLRVAILDDHPAVAVGLSAYLGEHGDFEVALTETNAVALAHQLKRHPCDAAVIDFFMPAQSWDGVDFIRRLR
RLCPDMAVITISAGKAHETEYAAFRAGANGFLPKGAPLSLLAELIRTTVVSRRAFFSARTGQLRATIPDPPDSRLTNAER
EILRQIAKGFSVTQISGRLLRSKKTVSTHKRRAMKKLGLADDLALALYLSEKFEQNVYG
>SEQF2266_AEE66853.1 threonyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVQITLPDGSQRQYPGPVTVAEVAQSIGAGLAKAALAGRVAFDGAEPRLVDTSFRIDNDAQLAIVTAKDADGLDLIRHST
AHLLAYAVKSLFPDAQVTIGPVIDNGFYYDFSYKRPFTPEDLQAIEKKMAELARKDEVVTREEWSRDEAVAYFKGIGEVY
KAEIIASIPSNETLSLYREGDFIDLCRGPHVPSTGKLKVFKLMKVAGAYWRGDSKNEMLQRIYGTAWASKDDQDAYLHML
EEAERRDHRKIGRELDLFHFQDEAPGLIFWHPKGWALWQQVEQYMRKVYQDNGYQEVKAPQILDLTLWKKTGHWDNYREN
MFTTESENRVYGLKPMNCPGHVQIFNAGLHSYRELPLRYGEFGQCHRNEPSGSLHGMMRVRGFTQDDGHIFCTEDQLQDE
CAAFTALLQKVYKDFGFTEVLYKVATRPEKRIGSDEIWDKAETALMESLRRTGCEFEISPGEGAFYGPKVEYTLKDAIGR
HWQCGTIQVDFSMPVRLGAEYVDQNDQRRPPVMLHRAILGSLERFIGMLIENHAGAMPPWLAPLQAVVCCISEHSAEYAA
QITQSLKKQGFRVQADLRGEKITRKIREHSLQKIPYLLVVGDKEMQNGTVAVRGLGGLDLGVIALDDFIARLAEDISTRR
NVTQLASAA
>SEQF2266_AEE66854.1 translation initiation factor IF-3 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLIGLDGEQLGIVKIADAFRLSEQSDVDLVEIAPNADPPVCRLMDYGKFKYQEQKRQAEARSKQKVIQVKEVKFRPATD
EGDYQVKLRNLRRFLEEGDKAKVTLRFRGREMAHQELGMRVLERVRDDLIELAQVEAMPKLEGRQMVMVLAPRKKAVGKP
DAAG
>SEQF2266_AEE66855.1 glutathione synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHVLFIIDPLPLLKAYKDSSVAMMQALQARGHTLSVALQGDLYIDAGEVRTRFAPIALRDGADLHGHDWWRETGAADEAP
LARFDAVVMRKDPPFDMEYVYSTHLLEYAQQQGARVFNSGAAIRNHPEKLAITEFPDLTTPTLVTRDMARIRAFHAAQGD
VIVKPLDDMGGTGIFRLQRSEPNLNAILETLTDNGTRTIMAQRYIPEIVKGDKRILLIGGEPMPYSLARIPLAGETRGNL
AAGGRGVAQPLSERDLHLARTVADRLAGRGLLLVGLDVIGDYITEVNVTSPTCFVEITEQTGFNVPEMFAVALESAAG
>SEQF2266_AEE66856.1 putative IIA component of sugar transport PTS system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGIVIVVHAPLGSAMRESVAHVLGDATEALAVHDIHPEDLPDDAAPRVLADILRVDQGQGVLVLTDLIGATPANIAKRA
VADAQAQGIQCCVLAGLNTPMLLRALTYRNLSLAETREKALAGGVQGCLRVD
>SEQF2266_AEE66857.1 phosphocarrier protein HPr [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSSDIVISNKLGLHARAAAKLTQLASRFSSEIFISRGAQRVNAKSIMGVMMLAAGLGVTVKLEASGSDADQALSEIQTL
FDNKFGEQE
>SEQF2266_AEE66858.1 phosphoenolpyruvate-protein phosphotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARGYAIGRAVVMGAAALEVAHYRIAPEDAAAESQRLTEALAKAQADLLQMADTLPEDAPRELGAMLNVHRLLLGDPLLA
EQALALIAERHYNAEWALTAQGQILGQQFEAMEDEYLRERGGDVRQVIERALHVLAGTSAMLPDGAQLDGNDPLVVVAHD
ISPADMLRLRGGRFAAFVTDLGGPTSHTAIVARSMGVPAVVALGNVRELVRDGDMLIVDGADGVVVLNPSARILAEYQAR
QRVYADERAELALLRDEPAVTLDGIDIVLHANIELPEEASLSLACGAHGIGLFRSEFLFMGRPDLPGEEEQYEAYASVVK
VMAGRPVTIRTLDIGADKTLDDEATVATNPALGQRAIRYCLARPEMFATQLRAILRASAHGPVRVLIPMIAHMHEVHATY
AALESARRELDARGQPYAARVEVGAMVEIPAIAIAIEPFVQALDFLSIGTNDLIQYTLAIDRGDHDVAGLYDPLHPAVLR
LVANTINAGERAGKPVAVCGEMAGDARLTRLLLGLGLTEFSMHPQQLLDVKREVRRAHSNALRVKVAAALNRALPIDPDT
LDAL
>SEQF2266_AEE66859.1 hypothetical protein BPTD_1485 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTSPRGARRPGASARGWRKPALLAPMRRNHRMLAPALVHGMQDFADCVEKPGGAGLDPPPPAAPHGYQGGAPG
>SEQF2266_AEE66860.1 ornithine cyclodeaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLQIDAEHTRRALRFTAVIDALRDAFRGGAHVPPRHVHAIESGGAQGTTLIMPAWNDAGYFGVKVINIFPANTHQGLPGL
HATYTLYSARTGVPLAQVDGDVVTAYRTAGAVALGASYLARADARVLLILGSGRIAGLVAQAMRAVRPIERVLVWNVRPA
GAQRLAAELREQGFDAQAATDLQAAVGQADIVSCATLSTEPLVRGEWLRPGVHLDLIGSFTPEMKETDPQCFAGTSVYVD
TDEAPTKAGDLLEAFAAGTLARTQIRGTLADLAAGRAAGRRDAAEITVFKAVGSALEDLTLAAQVYEARQGDVQAQ
>SEQF2266_AEE66861.1 hypothetical protein BPTD_1488 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTLLARLAVLATALVPAFAAQAEVVIGVDVSTTGPAAAIGIQTNNAIRLWPATLGGEPARYVVLDDGTDVSRAVKNMRK
LTSEDKVDAIVGPNTTAAALAGLDVLAEIKTPMIALAASAVIVEPMSDPKRAWAFKMPQNDSLMASVLVQDMKKKGVKTV
AFIGFADSYGDSWWKEFSQAAGDDLKIVAQERFQRTDASVVGQVLKVIAAKPEAVLIAGAGTPSALPQKTLLERGYAGKV
YQTHGIGTLEFLQVGGRDVEGTLFPTGPGVVARELPDSNPVKKVAVEFADKYEAQYGANTLTQFAGDAYGAWILLDSAVA
RALKTGAKPGTPEFRAALRDALENTRDLTVPNGVLNISAENHQGFDERARVMGVVRNGRFSYAGQP
>SEQF2266_AEE66862.1 putative extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLMRRFNFVKWGLLMVGAGLLAACSDSDSSDPGAAQQPAAQSASTLDAAKAAGKIRIGYANEAPYAYMDSKEARVTGESV
EIARVVLKRMGIDEVEGVLTEFGSLIPGLQAKRFDIIAAGMYVTPERCQQVAFSDPTYGVGQAFLVQKGNPKNLHSYADV
AKNGEAKLGVVVGAIEAEYATKQEIPAGQVVVFPDAVSALSGIEAGRADAYAATTLTVNDLMHKTSAGDKLEKADPFTDP
TVDGKSVRGYGAFAFRKDDQAFADAFNAELKKFVGSDKHRKLVEPFGFTAGELPGDVTAAKLCAAQ
>SEQF2266_AEE66863.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDNTWSLLPPLLDGLAVTLRIAAGAAALAIPLALAAGLARLSASPWLRAPAAVYVEVFRGTSALVQLFWFYFVLPMFGMK
LPALLVGIVVLGANAGAYGAEVVRGAILAVPAGQREAAVALNLTRARTIWRIILPQAVPAMLPPTGNLLIELLKNTALVS
LITITDLTFRGQLLRSETLRTTEIFTLVLLLYFAVALVITGGIRMLERRFKVR
>SEQF2266_AEE66864.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPIFDWGFALEILPMLGSALAITVQATLLGMLVAVTLGLALALLRRSPFWPVSALTALVIEFVRSTPLLVQMYFLFYVL
PVTGWQMSPLTTGILALGLHYAAYCAEVYRAGIEAVPRGQHEAATALNLSRWRTAVGVVLPQAIPPVVPALGNYLVAMFK
DTPLLSAITVVELLQQSKIIGSTTFRYTEPLTLVGVLFLLLSLVAAWGVRRLEARLKLYGGKR
>SEQF2266_AEE66865.1 putative ATP-binding component of ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASIRLAKLCKRYGDLDVLRGIDLEIPAGQTVSVIGPSGSGKSTLLRLLMTLDRPTSGAIEIDGESMWHDAQGREMGPN
SAHVRRVRGKIGMVFQHFNLFPHKTALGNVIEAPLYVLGLSRDEAVARGREYLDMVGLGDKLDAYPAQLSGGQKQRVGIA
RALAMCPEVMLFDEVTSALDPELVGGILQILRDLAARRTMTMIIVTHQMKFAERSSDRTLFFDEGNIVEDAESAQLFAAP
REPRTQQFLQSVIEAA
>SEQF2266_AEE66866.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66867.1 hypothetical protein BPTD_1494 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNGSCLCGRVAYTVDGPLADVVNCHCAMCRKAHGAAFRTRATVRAEHFAFVRGESDITWYSSSPGNYRGFCSACGTPLL
SRFDQTPDVYALPLGALDDDPGVKAACHVYVAHKAPWHDITDDLPRHPEGRPGH
>SEQF2266_AEE66868.1 formate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKILCVLYDDPVGGMPATYARDSLPAIARYPGGATLPTPLALDFTPGHLLGCVSGELGLRPFLQARGHTLVVTADKDGP
GSVFERELPDADVVISQPFWPAYLTAARIAKAPRLKLAITAGIGSDHVDLQAAAQHGLTVAEVTYSNSISVSEHVVMMVL
ALVRNYLPSYQCVLDGGWNIADCVARSYDLEGMQVGAGRIGSAVLRRLKPFDVGLHYTDQHRLPAATEQELGARYHPDAA
ALAGACDVISLHCPLHPGTEHLFDAAMLARMKRGAYLINTARGKICDRDAVVQALASGQLAGYAGDVWFPQPAPRDHPWR
SMPHHGMTPHISGSSLPAQARYAAGTREILECWLDGRAIRTEYLIVDQGRLAGAGAHAYTPGDTTAGSENAARFHP
>SEQF2266_AEE66869.1 hypothetical protein BPTD_1496 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLYDYACPQCGPFRAWRALREAGAPLACPQCGEHAPKAVTAPFLADMNPAVRQAHARNEKSAHEPTVASRPAPGHDHGH
GHGHAPVPAGLDPGPWVVSPHRSMVGHH
>SEQF2266_AEE66870.1 putative transporter protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLGLTLLYVGAVLFLNGLWLLEKIGDKEIWIINIFSGALTLLVSLRLAFGEDATPLSVRAAALTLLFTFTYIWVALNRY
NGADGRGLGWYSLFVALTAVPVALQTLAGATTLWGYWLGLNWVAWAVLWFMFFLLLVKKRPIARATGILTVLEGIVTGWI
PGFLLLNGMLA
>SEQF2266_AEE66871.1 formamidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQTAFHVEFNKAPEDQATKTHNRWHPDIPMVEWFNPGDEFRVECYDWTGGQISNDDSANDVRDVDLTRVHYLSGPFGVK
GAEPGDLLVVDLLDVGALPESAWGFTGIFARENGGGFLCEHFPDARKACWDFHGIYTTSRHVPNVRWPGIIHPGLIGCLP
DRALLERANKREAALLATDPNRVPPLLAPSYADTALMGQMSGEAARKAGAEAWRTVPPREHGGNCDIKNLSRGSRVYFPV
YVKGGGLSMGDIHWSQGDGEITFCGAIEMAGFLDIRVDLIKDGINKYGIVNPIFKPSPIEPHFAEYLVFEGISVDEHTGE
QYYLDAHVAYRRACLNAIEYLKKFGYTSEQAYIILGTAPVEGRISGIVDIPNACCTLAIPTEIFDFDIRPNAAGPSAKVG
KAKVAVTS
>SEQF2266_AEE66872.1 LuxR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDAKPAAAAAAQTEDRLLHVLYGTLNDDTQWQQVLAALCRRFATRAAALAHYDFDAGAGRILYQAPADGPLQAIYDQGRP
LNPWFLSKAPYLPGRILDSPELIAPEDFLQTDFYREILRPHGLFHRLCGVLARQRNHVWYLVLHRRKEQMPFDSADRARL
RTLMPHLMTVFEVRTRCAAQVRLAGLLARIVQAYLPPVLVLDRDGAVLHGEIAADALPAQLRLVDGRLATRDAALQKPLR
DRIRRMAEAAQAGKPGRASLALDEADGAAPIQLTLCALGPDTNAQGGQAGALVGLLISDPGQDARQAMRRFADHFALSPA
EEKVSALILQGMTPARVARSLHISEHTVRSHLKQIFRKTNTHRQAELMSLRERADY
>SEQF2266_AEE66873.1 hypothetical protein BPTD_1500 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCSSPGHTFSKPVREAITLVAGLGVAGDAHQGATVRHRSRVRADPGQPNLRQVHLIHGELHDALQQAGFNVAEGTLGENI
TTRGIDLLDLPRDSLLYLGGQAIVRITGLRNPCAQLDRYQRGLMAAVLERDAAGGLVRKAGIMAVVEAGGDVRAGDPIEV
VLPPPPHHRLDCVYGPRNRDRRAVPR
>SEQF2266_AEE66874.1 fructose-1,6-bisphosphate aldolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALVSMRQLLDHAAEHGYGIPAFNVNNLEQVQAIMEAAAETDSPVIMQASAGARKYAGEGFLKYLIQAAVESYPHIPVVM
HQDHGQSPAVCQGAIDLGFSSVMMDGSLKEDGKTIADYDYNVDVTKKVVDMAHKLGVTVEGELGCLGSLETMQGDKEDGH
GADGKLTMEQLLTDPEQAADFVRRTQLDALAIAIGTSHGAYKFTRKPTGDILSIARIKEIHARLPNTHLVMHGSSSVPQD
LLAEIREFGGDMKETYGVPVEEIQEAIKFGVRKINIDTDIRLAMTGAIRRFFAENPSKFDPREYLKPARAAAKAICVQRY
TQFGTAGNASKIKPLPLADMAQQYAAGKLAQVVQ
>SEQF2266_AEE66875.1 hypothetical protein BPTD_1502 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPAPAAGTPADIHTYTGGCLCQAVRFRATGPLLAAATCHCRECQYLSGGAPAHALLLPAGALRLERGAPREYHYRSAAG
RRVMRSFCADCGTPLFGHTEDAGYTVVRAGALDEPERFANQLTVWTASAPPWHAIDTAHPHFAGNAPS
>SEQF2266_AEE66876.1 phosphoribosylaminoimidazole-succinocarboxamide synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSALHESSIKSLPLLGRGKVRDMYAVGDDKLLIVASDRISAFDVILDDPIPGKGQVLTELTDFWLRKLAHILPNHSTGI
QPEDVVAPDEVDQVRGRAVVVKRLKPILVEAVARGYLIGSGWKDYQASGSVCGIALPAGLQQASQLPEPIFTPAAKAEFG
MHDENVDFAHVVKEVGQEMAERIRDVTLRLYGEAARFAATKGIIIADTKFEFGLDDNGTLHLMDEVLTPDSSRFWPADGY
RVGISPPSFDKQFVRDWLETQPWDKTPPAPRLPRDVLEKTAAKYREALDRLLA
>SEQF2266_AEE66877.1 hypothetical protein BPTD_1504 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVEIVLALTPRDFHKSMTTHADHRIWQDVYCPVTAMGAVYLKLTVLDGVPIVSFKEL
>SEQF2266_AEE66878.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKCPVCGAAALARDTRDVPYSYKGETITIAAVTGDWCPACGENVLDGAESARVSEAMLAFNRLVNARRVDPGFIVRVRRK
LGLDQREAAALFGGGTNAFSRYENGKTRPPLALVKLLRLLDRHPELLEEVRAD
>SEQF2266_AEE66879.1 hypothetical protein BPTD_1506 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNYFVLLRYTRPSSHKGKRKGSDEMLMMLPFLSGALAVWFGILGKRRPCFALWLVTLAVFAVGAHRYMTGPVPLPLAL
>SEQF2266_AEE66880.1 hypothetical protein BPTD_1507 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIFLRNPGRGSRIVNTLVLLAVSLLLLSALAWQWLDAEAPCPLCLLQRAALVLIGVGLLLNVRMGPSPLHYAMVLAPALG
GLTAAGWQLLSPDAGAAAPPWQGWAFLLFGAMLVYCTLMLAADRKWGDNALKKPVALPGALVMGLFLVAVLANAAGTAL
>SEQF2266_AEE66881.1 phosphoribosylaminoimidazole carboxylase catalytic subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGVIMGSSSDWEVMKHAVAMLQDFGVAHEARVISAHRMPQDMAEYGAAARARGLRAIIAGAGGAAHLPGMMAALTEVPVF
GVPVPSRYLRGEDSLLSIVQMPKGVPVATFAIGEAGAANAALHAIATLATTDDALHARLVAFRARQTDAARAMKVPPEA
>SEQF2266_AEE66882.1 phosphoribosylaminoimidazole carboxylase ATPase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQSSTFDPIASGDWLGLLGGGQLGRMFCHAAQSLGYKVAVLDPADECPAGMVADLHIQAAYDDADGLARLAGRCRAVTT
EFENVPADSLRALAARCRVSPAADAVAVVQDRIAEKTFIAGQGIEVAPHAAICARDDLLAAPQALFPGILKVARLGYDGK
GQARIASREEALAAFDEFGGVPCVLEALLPLDYEISVVIARGFDGASMVFPIARNVHRDGILAVSSVTPGAADASHAARQ
VQATQAAQAIAQGLGYHGVLCVEFFVLGDGRLVVNEIAPRPHNSGHYTIDACVTSQFEQQARVMAGLPLGSADLLAPAVM
LNILGDVWFEPGAHAPREPDWSAALAVPSAKLHLYGKREARRGRKMGHVTIVAATPEQARDDAARVACALGMAAPL
>SEQF2266_AEE66883.1 hypothetical protein BPTD_1510 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIPAAMNAADPAVAHAAACLLAGELAAFPTETVYGLGADAENPQAVARIYAAKGRPSNHPVIVHIAPEGDVDYWASDVPA
AARQLIQAFWPGPLTLILKRAPHIGAAVSGGQDSIGIRCPSHPVAQALLRAFAAGKPNGQGGVAAPSANTFGHVSPTRAE
HVRAEFPREVAAGMPVLDGGDAEVGIESTIIDLSRLDQGVGPVLLRPGHISAAQVAAVLGMPVARPDAAAPRASGTLKAH
YAPRTPLELLDAAQLPRALAAAPAGVRQAVVALAPAPAGLSADVHWRMAPAGPARYAQALYALLRELDRQGYARILVEQP
PRSGDWDAVNDRIGRAAAAFSLDTTDLPGT
>SEQF2266_AEE66884.1 putative extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRHIAMAAGALALALGAQAAHAGPTLDAVKKKGFVQCGLTDGVAGFSATNSKGEWEGMDVDICRAVAAAVFGDAGKFKG
TALSTQQRFTALQSGEVDVLLRTVTLTQTRDTSLGLAAVAASFYDGQGVLVRKALGVKSAKELDEATICVQPGTTTELNL
ADWFRANGIKFTPVVIDKVTEVVRAFESGRCDAFTDDASQLAAVRATQVAKPDDFEILPERFSKEPLGPMVRQGDENWLG
IVRWTLFALMEAEEYGITQQNVDEMLKSKNPNVLRILGVTPGAGKNMGLDEKWAYNAIKAVGNYSQIFERNVGKDSRLGL
QRGVNALWSQGGAMYPWPIR
>SEQF2266_AEE66885.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTVAPEDSPLFVAALARGLTLLAAFSEGRPAMTLPELAEATGLTKSAAQRFAHTLWTLGYLRKNPDSKKFSLSPQSLQL
GMQYAQTSPLVLGGNPFLHSLNRTSQETCSLAEPDGLDMVYVARFATHKQMFVHMPVGMRIPMYCAAAGRAVLARLEPDR
ARRLLQQSPRAARTATTLTDLDALMAELAFTREHGYARSNGEYYPGDITISAAVLDNAGTPAGSVNISVPSSRWSFEEAQ
AVFGPQVLETAHAISASRTLGVLPPFYRMAPPSALNSD
>SEQF2266_AEE66886.1 putative arginase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGVPARRPAGEAALACVLGIPFDCGTHPFRVGARQGPDAIREQSRLLRPYDLARRAGVDNPVEFLRLLDLGNVACVPGDP
QASYPAIEQAVAQVLQAGAIPITMGGDGAVTLPQLRAVARRWPGVAVLHFDSHTDTYPIAGYNTATTFTRAAEEGLIDLS
HSFHVGTRGNSFMGGVIEYGREVGYTVIPYDDFDRDQAGTLARLRGQLGDRPVYLCFDMDIFDPSCAPGVCTPEWGGLSP
KEGLNLLRALSGLNFVAFDVNTVSPPQDVGGATAFLAASVMQEFCALAAAAVQAYPQGRPD
>SEQF2266_AEE66887.1 putative amino acid-binding periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIKAALGILATVGMLAHAGSAAARTLDEVRAAKSANVVTTASAPPHGFKNPASNQLEGIMVDVGAAVAKHLGVAMNLKD
VPFSGLIPTLTSGRADVMSAPLFVTPERAKVIDFSAPVYEWGEGLVLREQNPDDIKRFEDLQGRRIGVLVDSVQFNMIKD
MPDTKVSTYQDYSTLLADVRAGRIELGIIDPPSIIYQIRTKKIPGVKLATQYQPQKKWHVGLAVQKDNKALLDAVNVALA
EMKRNGELAEIGRKWGVADLISK
>SEQF2266_AEE66888.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLETLRMYLTPLAEGTMWMLALFFCSAVLAVALGLLVCLCRLSKSRVLSRGARLYIDIIRGTPLLLQLFYIYYGMPELG
VVINAFVAGVLGLTLNFGAYLAELFRSGIQSVDSGQYEAARALGLNKVDRLRRVVLPQAVRTVFPALGNYALVLIKETSL
VAVISVYELMRAGEMLAGATFQALTVYTMVGAIYFAMCSVLAHLFRRSEKRLTVPGYWSGAGENHDISKA
>SEQF2266_AEE66889.1 putative ATP-binding component of ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDACNQPAPVITLRGVSKWYGDFQVLRDLDLDVYQGERVILCGPSESGKSTTIRLLNRLEEHEKGEIVVNGITLDGELRN
IERIRADVGMVFQHFNLFPHLTVLENCTLAPMRVKGLDEGEAARRAMQFLERVRIAQLADKYPGQLSGGQKQRVAIARAL
CMQPRIMLFDEPTSALDPEMVKEVLDTMVELARDGMTMICVTHEMGFAREVGDRVVFMDGGSIVESDTPERFFSAPRSSR
AQAFLGQILG
>SEQF2266_AEE66890.1 hypothetical protein BPTD_1517 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNGADSLCDTLLANDIDVCFANPGTSEMHFVAALDRKPRMRCVLGLFEGVVTGAADGYARMADKPAATLLHLGPGLGNGL
ANLHNAKRARTPMVNVVGDHATYHVQYDAPLTSDVEAVAQPMSHWVGRIRDAASVAAQTSEAIQVARQEPGNVSTLILPA
DAAWTDLPDDTPAPQPVRQAPQAQVDAQAIRAAAQAIRSGQATTLLLGGAALRGRALAAAGRIAHATGVRLAAETSSRRI
ERGANRPPVVRLPYPVDLAVAFLKDVRHLVLVGSRSPVAFFAYPGKPSLLAPQECDQIVLAEPEQDLHHALEWLADELGI
PADAPQTRPAALTEAVPAEGRLTSAAVNRVAAALLPDNAIVCDESITQGREFGIYSVHSAPHDWLQLTGGAIGIGLPLAT
GAAVACPDRKVVLLQADGSGMYTVQALWTQARERLDCLTIIYANRTYATLHGEMKNVGVIQPGENAKRMLDLVDPHIDWV
QVSQGLGVEAVRVDTVEGFTQAMRAALARKGPFLIEAVI
>SEQF2266_AEE66891.1 hypothetical protein BPTD_1518 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFADLRAGMVITGGPLQVTEAEILEFARKFDPQWFHTDVQRAAEGRWGGLIASGWHTCALAMRMAVDAILHDSESFGSP
GLGEVSWRVPVRPGDTLTLHARVQGARVSASRNDLGIVNWAWVVDNQHGETVLELDATSLFDLSGDS
>SEQF2266_AEE66892.1 glutaryl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSTPSFHWQDPLLLDQQLTEEERMVRDAAVAYSQDKLAPRVLEAFRHEKTDPAIFAEMGELGLLGATIPTEYGGAGLNY
VCYGLIAREVERVDSGYRSMMSVQSSLVMVPINEFGSEAQKRKYLPKLAAGEWIGCFGLTEPNHGSDPGGMETRATKTPD
GYKLTGNKMWITNSPIADVFVVWAKCVGGDFDGKIRGFILEKGMKGLSAPAIHGKVGLRASITGEIVMDEVEVSEEQMMP
GVSGLKGPFTCLNSARYGIAWGALGAAEACWHTARQYTMDRKQFGRPLAANQLIQKKLADMQTEITLGLQGCLRLGRMKD
EGTAAVEITSIMKRNSCGKALDIARLARDMLGGNGISDEFGVARHLVNLEVVNTYEGTHDVHALILGRAQTGLQAFY
>SEQF2266_AEE66893.1 thiamine pyrophosphate protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTANHSTPASRLGGHILVDQLAAHGVKHVFCVPGESYLAVLDGLHDASIDVTVCRQEGGAAMMADAHGKLTGEPGICMV
TRGPGASNALAGVHIAKQDSTPMILFVGQIERGMREREAFQEMDYRAVFGTQAKWVTEIDQVERIPELISRAFHVATSGR
PGPVVIALPEDVLVETASVPDAPRYEVIDAAPAAGQMDQLAQMLAQAKAPVAILGGSRWNAQAVQQFADFAQRHALPTAV
SFRRQMLFPADHPCFIGDVGLGINPALLKRIEQADLVLMVGGRMSENPSQAYTLLDIPVPRQKLVHVHPDSAELGRVYRA
NLAINTSPAAFCAALAQANGPSQPAWADDTQAMRASYLQWSDPAAIRTPGALQLGEVMAFLEKTLPADAIMANGAGNYAT
WLHRFHRYTRYGTQLAPTSGSMGYGLPAAVGAKRIWPQKTVVCFAGDGCFLMHGQEFATAVQYDLPIVVVLIDNGMYGTI
RMHQEKHYPGRISATSLKNPDFAEYARAFGGHGERVETTEQFAPAFERALASGKPAILHCLIDPETITPSTTLEKIRAAA
LKAQ
>SEQF2266_AEE66894.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRNGIPNLSALQAFEATARLGSFSRAAEELSLTHSAVYRQVASLEDRLGVQLFTRVRRRIVLTDHGAEYAGRIRHHLDQI
EKDTFGLVSRTGMGRSIHIAVVPTLATTWLIPRLADFQRVQPDITVSLSVRTLPFQFKDQPFDGALYHGDGIWPGTQGVL
LFPERELVPVCAPELAERAPGRDDGALGGMMHLYLYSRPDAWCQWYAANQYAYGPQAAGGPRYDLFTMMLAAVQAGLGVG
LMPRFLVQDALDAGTLVMPVPQALSVSQGYYFGYPQRSERSGALKAFEVWLKSAV
>SEQF2266_AEE66895.1 site-specific tyrosine recombinase XerD [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSSAPLASQADLDAFIDAVWLEDGLAANTLAAYRRDLSAFAQWLENLACHPGLATGASLREAGKGDIEAWFAARHAESR
ATTANRRLAALRRFYAWALRERLTPSDPCLTLVTAKQPPRLPKTLSEAQVDALLQAPDLDTARGLRDRAMLETLYATGLR
VSELVSVKALDVSLNEGVVRVVMGKGGKDRLVPLGAEAAHWIERYAGSARPELLGARVADALFVTARAEPMSRQAFWQLV
KKYALAADIHAPLSPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLKALHAAHHPRA
>SEQF2266_AEE66896.1 hypothetical protein BPTD_1523 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKNRHVSETPATQLLRQRKVAFTEHTYDYVDHGGAGEAARQLGLDPHAVVKTLIMEDEGGHPLVVLMHGDREVSTKNLE
RQAGLKKVAPCQPEVAQRHSGYQVGGTSPFGTRKRMPVWVEASVLDFPQIYVNGGRRGYLVGIAPQALVDLLGARAVQVA
LP
>SEQF2266_AEE66897.1 hypothetical protein BPTD_1524 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKKLLMLVGDYAEDYETMVPFQTLLAVGHTVHAVCPDKKAGDTVATAIHDFEGAQTYSEKRGHNFTLNHDFAKVEPQHY
DGLVIPGGRAPEYLRLDERVLDIVRHFDQAGKPIAAVCHGAQLLAAAGILQGRTCSAYPACAPEVRLAGGTYAEIGIDQA
HTDGNLVTAPAWPAHPAWLAQFLAVLGTRISH
>SEQF2266_AEE66898.1 hypothetical protein BPTD_1525 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCEIFIRANQRSYSVQARSLRLHGVATSVRLEQLFWDVLEEIAARDGMRVTQLIERLYDELVQYRGEAANFTSFLRVCCL
RYQVLQAEGRIPADATVPIRSLDAQAVLRGLPANLYDSRPLG
>SEQF2266_AEE66899.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66900.1 D-alanyl-D-alanine carboxypeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPAAASPAAEAAALRSSTAYVQDLETSTVLFAKNENVVRPIASISKLMTALVVVDANLPMDEMIEITDDDVDTLKHTTS
RLRVGTVLSRGDMLHLALMSSENRAAHALGRNYPGGMPAFVAAMNAKARSLGMLNTRFVEPTGLSSENVSSPRDLARMLR
AASQRPLIHRYSTDTEYEVEINNRTQTFRNTNLLVRKPDWDIKVSKTGFINEAGECLVMLARINGRDMAIVLLDSQGKLS
RIGDAVRIRRIVQNDVAML
>SEQF2266_AEE66901.1 hypothetical protein BPTD_1528 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAVAAALARAVRVRARMVDLRVLPFLALAVFLLLADFFLAVLADFLLEAVLAGAFLAEAFLACWDLQAADLALVLHGSA
LAACAA
>SEQF2266_AEE66902.1 hypothetical protein BPTD_1529 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSEKPSLRILFIGTGVVLLAMGVRATFGLFMQPMDLAHGWGREVFSMAFALQNLVWGAACIGMGILADRYGSGRTIVL
GAVLYALGMIGTRFATDEATLYLTAGVLVGLGQAGTTFPVILPVVARSVPAAYRSTAMGIASAGGSLGQFLVVPAGQQLI
TGLDWPGALWVLSLLVAVGAPLAYFLRGKPGVHGGVQQSLGAAVRQAMAHPSFHFLSWSYFVCGFHTAFITLHLPAYVVD
AGMKASHGATAIALIGLCNVIGSFYAGKLGGVYSKRLLLAAIYGLRAFGMLLLLAVPLTPLVLYVFAGWMGLFWLGTVPL
TQGLIGQIYGLRYAATLSGIAFLGHQVGSFIGVWMGGAVYARTGNYDLVWWTGVALAVVAALLCLPVREQPLAQPAAARA
>SEQF2266_AEE66903.1 hypothetical protein BPTD_1530 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDDFRTDFPSCTLRDLGELPAIDTLVLTVNNRLSRRLTLDLAAQLSSERQVSELPRIMPLSAWLADCVAELAFDERYEV
PAYRLSSFATQLVWREAIRLEEADRALLDADQAARLALDADLLVDEWQAHVPAGAETDEYRGFSRWRARYRAMLGELDAE
DANQGYERVLEALRQGALRAPRHVALAGFVDISPRFARLLRALADGGADVVAWRDAVREPAWPQRFEAADRGAEWRAAAR
WAADRLRADPRGRYAIVSPQLEAEAPFARRVLGQALAGQDAPLPFNVAVGRALDEWPAVRAALAWLALLAEVAACGAGEP
ALFGAALLAGHCAGDLQEGPRHAALDARWRRQALAHVGPADWQRGLEECPRLAEGWSQAMAIWQAGQRSDTCDAWAPRFK
AALTALGFPGERALDSVAYQVMGALGDLLAEFTALAPAAGRLDGRAAVRLLASAARAGSFQPQRDPSARLDVLGLLEAEG
GAWDGIWVLGLTDDVLPASPKPNPLLPLAVLRQVGAPRATPEREREWAEGMFMALRRCAPEMIASHAAMDGERELRPSPL
IVRAAPADWQPGTDAQVAALEQEILDDSQGPPLQAERQSRGGLDVLDTQARNPLWAFVRHRLGGRAMAPYADAATVSVRG
QFLHRALELVWRMLPDQEALHAAMAEGRLAALVEQAIGEAARTELAGYPAALRELECARAAAVLANWFDSEAQRQPFEVA
QIEQEHSWQRGALALKVRLDRMDRLADGRALIVDYKTGAAPGRPESDWARARPVNLQLPFYASVLADGADTEVAGLMLAQ
IHARQVSAQGLAADDLGIEGVTPVEQSKAFEGQPWPRILQRWRAAVEMLADEYANGYAANVALRQDDLKFCDAMPFLRLH
LDDEDA
>SEQF2266_AEE66904.1 putative nuclease/helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEPERLPHDHAARRQALDPSRSFLVQAPAGSGKTELLTDRILALLATVTRPEEIVAITFTRKAASEMHARVLHKLSLGA
GEPPRSAHERRSWELARAALARDQEQGWHLLDHPARLAIRTIDSFCAGLVRGMPWLSELGGMPDIADDARAHYEAAARAT
LELADEHDAVRALLAHLDVDVQAAKDAIAAMLGQRDQWMPLLQFGLDRDGLEASLAEALEHELDSLCGQLPRGWSQALCG
PARLAAAALAGSGDARLAALQDWDAPLPPMAEALDQWRALAHLLLTGTGALRSPKGVNKNLGFPAGCDHKEPFTAWLAAC
DGGAPWVRALAAVRDMPDAHFSDAQWDVLSAQLTTLALSVAQLRVQFARAGEVDFIEIAQRAAYALGSGDDPGELLLKLD
ASIRHLLIDEFQDTSQGQIDLLATLTAGWQDGDGRTLFLVGDPMQSIYRFRKAEVGLFLQVAERGVGQIRPGFLQLTDNF
RSQGGVVDWVNRVFAQLLPRANDADSGAIAYSPSTAFHETAPGEAVLFHPAWECGDAASAERQAEDIAVGLVRAALAEHE
GSRHPVAILVRARSHLGSLTRRLAQEGIPCRAVELVPLGLRPVVADLVQLARALAHPGDRLAWLSVLRAPWCGLTLTSLQ
RLFGADQLTPVPTLLERALRGAARSEGGQGSLFDAPAPGCLAEQALAPDEYRRLRAVAAILLDRANDAGLLPLAAWLEQL
WRRLGGPGLYAGSSAASDAESLFQLIERLAPHGGLDAGLLDTAVARLFAAPQATGEQGTVEIMTMHKSKGLQFDTVILYG
LHRAPRGDQAPLVRFEQSRGRVLLGPIKPRAETEADPVSRYLGAREARRAAYETDRLFYVAATRARQRLHLVAHVAVDAA
SGQARTPASASLLGRLWPHLSVPQPPDVAQDQAAATGEQPALVGEPLRRLAGAGLASLAARTLPREAAAGVYGGGQGAEH
PSWQLEAGYDAAVGTLAHAWLARIGGDGPQHWSADALAVRLPAMRRQLTRAGIPAGQADAAAQAVLDTLQSTLDDERGRW
LLGQARARREWPLIDAAGRVSVIDLALSTEDGWLIVDYKTGRPHEHETPEQFAIRMRQRHGEQLMRYCAQVTALDGRPAR
AALYFPRARAWIDL
>SEQF2266_AEE66905.1 DNA polymerase III subunits gamma and tau [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTYLVLARKWRPRSFDTLIGQDHVVRALTHALDTQRLHHAWLFTGTRGVGKTTLSRILAKSLNCENGITSKPCGQCRACT
EIDAGRFVDYLELDAASNRGVEEMTQLLEQAVYAPGAGRFKVYMIDEVHMLTGHAFNAMLKTLEEPPPHVKFILATTDPQ
KIPVTVLSRCLQFNLKQMPPDAIVGHLQAVLGEEQIGFEVPALRLIGQAAGGSMRDALSLTDQAIAYSAGNLSEEAVRGM
LGTIDQRHLVRLLDALASGDAAGVLAVADELAVRGLSYAGALADLAVLLSRVAIEQRVRGALPQDDPLTEDITRLAAALH
PDAVQLFYSVAVHSRGELTLSPDEYAGFVMACLRMLALNGEAGPATAVQAPRADTTPRAAAPAAAAPAETRPEPTPAPAL
APQAAAAPRAVARSESKPQPAPEPEPEPEPAPRPAATPVAATPPAVAEPEPVAAPAAQARAAEPAPAPVPPWEDLPEAVA
APAPAQPAAAPAPVAADDDGPPAWVDEAIPDEAGGGFVPEHSFTADPDDEFETLAPAAAAMPAPRAPTPRRESGGRGRAA
RSRLADMSPTGWPELAARLPVTGLAAELARQSEWAGVQGDAVLLRVAVRTLAESESRVRLQTVLCEHFGQGLRLEIEVGV
TGDGTAHAVAQIERAARQQAAEDAVAVDPFVQALVADFGGRVVPGSIRHVDNPPAA
>SEQF2266_AEE66906.1 hypothetical protein BPTD_1533 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKGQLAGLMRQAQQMQENMKKAQDALAEIQVEGAAGGGLVKVTMTCRHDVKRVAIDASLLGEDKDMLEDLVAAAFNDAL
RKAEATSQEKMASVTAGMPLPPGMKLPF
>SEQF2266_AEE66907.1 recombination protein RecR [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDPQLPEPEPLIALIEALRRLPGVGVRSARRMAYHLLQHDLQGADMLGRALSAAVQHLRHCARCNSFTEDEVCATCANPK
RDPGLLCIVETPADQNMIESSHGYRGLYYVLMGRIAPLEGVGPRELDFQRVIERACDGVVQEVILATNFTAEGETTAHFL
DDALSERGLKVTRLARGVPAGSELEYVDAGTIAWALMERRST
>SEQF2266_AEE66908.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66909.1 hypothetical protein BPTD_1536 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNFLEASGWSVQPAGEHAIRAISPMTLGLDGQHAAFFIVHPDAHTFYLTDACKTALHAATFGIELVAKRLEVLNQTPGV
SLARFDKAGAIVAQGPNEQLQDALWDAVKLAMALSFQCAKWMPKFSRLRFRAQVGRTLAEAVGANRMVKGAKAQGSSGHT
ADFAFAVRSATSTSMTYIEPIALKAGRKVDWTQVYQTHGKMSDVKMADARNARLVILEDGATAEEFKKAVAILEQSAAVR
TLAKTRDWQEVFAT
>SEQF2266_AEE66910.1 hypothetical protein BPTD_1537 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLLARAMHGRRRIFEFNRVPMANNVEPLIAPDEVQEILAEPKETTKPISWAHKPAASNSQWQEFSCACRLKGDVREDIL
FRITYRGARTAVFGQATIFLPEAFGASLFVGPHRVFGVDTDDSFHTSMVGENLPQFRKALADRSHQHIWVEAGEGYAEPV
VPALESIGALVDYFLPRANLTLTGGFAHPLKGRQIELIL
>SEQF2266_AEE66911.1 hypothetical protein BPTD_1538 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMDDSRESQNIEDRRAAGPRLGGKGRIGIGTIVLALVAMYFGIDPSVVLQMAEGPATYEQAPAGAPPANDPQARFVAKV
LGETEDTWGAIFTQSLNRNYVPPKLVLFRGATPTACGTGQAAMGPFYCPGDSKVYIDLGFFDEMERRLNAPGDFAQAYVI
AHEVGHHVQHLLGVAEQVDRLRQRNPAQANALSVRMELQADCFAGLWARRADQARNILESGDIEEGLNAASAIGDDTLQK
KSQGYVVPDAFTHGSSAQRVRWFKRGLESGDLRQCDTFGAAQL
>SEQF2266_AEE66912.1 hypothetical protein BPTD_1539 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALLLTLHPANPQPRLIKQAAQWLSDGGLVAVPTDSSYAVVAPLDDKAAADALRRLRGLDERHHLTLLCRDLAEIGQVAR
VDNKQYRLLKAATPGPWTFILEATREVPRRVSHPSRKTIGIRVPAHAVALALLEQVGAPLLSTTLIPRDEEDALNDPEAI
QERYQHELAAVIDAGACPQTPTTVVDLTGAEPAVLRRGGGDPAALGLD
>SEQF2266_AEE66913.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66914.1 hypothetical protein BPTD_1541 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSMEIDRRAFLALALALAGGAAPRALWAAAQADPLYLAARRRGERYEAVVLGPDGRDRLAVPMPARGHSFALDAPRRRA
VVFGRQPGFFAVAFSVDGARPPQALAAAPQRHFFGHGLFLPDGQRMLATENDYEAGRGVLGVYDASAGGGYRRLGEFDTA
GIGPHEALLLPDGKTVCVANGGILTHPDYGKLELNLDSMRASLAYLDASDGRLLEKVELDPALHRLSIRHLAVAADGAVW
FGCQHMGPRSERPALVGRHRRGRAIELYAGPAETLRGFRNYIGSVAAGDGGRVIATSSPVGGQVAYWDSATGRCLGVTAL
ADGCGVAPLETGGFLISSGLGAMVHGGPDGGAQAMLEAGGQVSWDNHLRRYAA
>SEQF2266_AEE66915.1 hypothetical protein BPTD_1543 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAITAPTADFSAAESFETMQAGAATVKKLLNADIFSHPSANMTFEGRQRFQVGNGLFRKLWVSAPASTQASDGLGPLFN
ARSCQACHVKDGRGTVPGFDPDPLERSDAVALLLRLAVEPSSEAERRLLAEGKVPCLPDPTYGSQLQNFAVAGLPAEGRL
EIEYEPVSVALNGGETATLMKPAYRIEDPGYGPLRPDLHLSPRLAPPMIGLGLLEAIHEADILANAAADHGDGVSGKPNW
VRDVRTGQKVLGRFNWKAGQPTVEQQSAAAFSNDMGLSTPLFPSHFGDCTPAQAECFKMPHGAQPHLGEHEVPGHLMDFV
TTYSTNLAVPQRRDADDERVLAGKKLFYQANCVACHVPKYVTRRDAAQPEHRFQLIWPYTDMLLHDMGDGLADGVSEEQA
NGREWRTPPLWGIGLTRLVNPSATWLHDGRARTLLEAVLWHGGEAQAARDRVVAMSPGERADLIRFLESL
>SEQF2266_AEE66916.1 hypothetical protein BPTD_1544 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWMRKLLRKTVLALALGVATPLAVAAAQPKAVVQTYSDIALAGYQDALASAQALRTAIDALIAAPSAQTLQAARQAWLAA
RVPYQQTEAFRFGNPVVDDWEGRVNAWPLDEGLIDYVDAAYGTESDANAFYTVNVIANARISVGGKTIDASKITPQLLSE
VLHEADGNEANVATGYHAIEFLLWGQDLNGTGPAPKDRTGTPQERHAGDRPHTDFDPRQCTGGNCERRVQYLKAVTDLLV
DDLQEMVDNWKAGGAARKVVEEDPKAGLIAMMTGLGSLSYGELAGERMKLGLMLHDPEEEHDCFSDNTHNSHYYNQIGIR
NVYLGNYARIDGKTVSGASLSDLVKARDAKLDAEVRAKLDATVQAMEAMKQRAETVETYDQMIAQGNKEGNAVVQVAIDR
LVDQTRSLERVIAALELGDIELEGSDSLDKPDAVFK
>SEQF2266_AEE66917.1 hypothetical protein BPTD_1545 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMSAVPVSLPVTMLVTRHISPDRYGDFLAWMRQGEILAAGFPGFLGSGVLQPPEGGDQYQIVLRFDSEASLARWEQSLPR
RMWLERGAALVRASHARRVTGMDSWFGASAGAPPRWKQAVSIWLVYFPMLLLFSTALDAQLSALPLFWRVLATTLCMTPV
LSFLCIPLVTRVLRGWLHPRAVGAAD
>SEQF2266_AEE66918.1 putative chromate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTYKIAVFVDSLRAASFNLRLARALEKLAPANFEFEHVSLGDVPLYNQDHENDMAAPAAKLKQQIADAHGILFVTPEHN
RSIPAALKNAIDWGSRPWGHNSWIGKTAGIVGTSPSAAGTAMAQQHLRNILAAEGVNVLTTPEVFLQFKEGLIDEQFNIT
NEDTRKFLQGWLDRYVAWVTRLAG
>SEQF2266_AEE66919.1 hypothetical protein BPTD_1547 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSHVYKQIELVGSSAVSSDDAIAQAIARASDTLRHLDWFEVTETRGHIKDGKVAHWQVSLKIGMRLEADD
>SEQF2266_AEE66920.1 DNA mismatch repair protein MutS [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSTPKQTTGDALAGHTPMMQQYLRLKAEAGPLLLFYRMGDFYEMFYEDAERAARLLNLTLTKRGNSNGTPIPMAGIPVH
AMEQYLARLVALGESVAICEQIGDPAAAKGPVERRIVRIVTPGTLTDEALLPAKADRALAAVCVTGKREPRAGLAWLNLA
SGAFHVTECAPAQLESELHRIAPAELIQAESAELHMAFEGARTRVPDWHFEADGARAQLLAHFKTDSLGGFDVEDMPAAV
CAAGALLRYAARTQSQALAHVQTIAAERSGQYVLLDPVTRRNLELTQTLSGEESPTLFSLLDGCRTPMGSRLLRRWLHHP
LRENEPVLARQHAIATMLTARQEGEQTFAAAGLLETLRDALNAFPDIERIAARVALRSVRPRELASLRDALAALPALHAS
LTPLSGSPRARELAAQLAMPPDIGELLARAVASEPAVAIRDGGVIAAGFDSELDELRALATDGGDFLVQLEARERERTGI
GNLRVEFNRVHGFYIEVTKGQTDKVPEDYRRRQTLKNAERYITPELKTWEDRVLSAQDRSLAREKWLYEQLLDALAQYVR
PLSQCASALAELDTLAALAEHARRHDWVAPELIDGAEIDIEAGRHPVVERAIERFTPNGCRLDQTRRMLLITGPNMGGKS
TYMRQVALIALLARTGSFVPATRARVGRLDRIFTRIGAADDLAGGRSTFMMEMTEAAAILAASTPASLVLMDEIGRGTST
YDGLALAWAIAYRLLTHNRALTLFATHYFELTRLPAEQPTAANVHLAAAESAGGIVFLHEVREGPASRSYGIQVAQRAGV
PAAVIRQASRELERLEAQGAPTPQLGLFAAALDADVQSQAMTEQAEDAAALAQLRDQLVAIDPDSLTPREALDALYRLKQ
HLT
>SEQF2266_AEE66921.1 hypothetical protein BPTD_1549 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPATALALLGGLAPADFMRRYWQRKPLLIRQAIPGFKPPASIAALRQLARRDDVEARLIWREQGQWNMENGPFARLPKA
GEPDWTLLVQSVDLHHDAVSALLQQFRFIPDARLDDIMISVAGDGGGVGPHFDSYDVFLLQASGRRRWRYGRQKDLSLQP
DLPLKILSRFEPEEEHVLEPGDMLYLPPQAAHDGVAEGGDCMTISIGFRAPSQAMLARGLLEAAADQVMARVGLLGGPYG
EPPLPGARLDGLYRDPGQPAVAHPAAVPDGLVEATLATLDRLRFDEALAARFLGCWLTEPSQLSVFDAGGDQVDLEDSWP
ASGALVLDRRSRMLYRGRQLFINGEAASVAAEPALRHLADARALACDDPRCARLSDEARSCLADWLDAGWLRYQP
>SEQF2266_AEE66922.1 serotype 3 fimbrial subunit precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKFSYPALRAALILAASPVLPALANDGTIVITGSISDQTCVIEEPSTLNHIKVVQLPKISKNALRNDGDTAGATPFDIK
LKECPQALGALKLYFEPGITTNYDTGDLIAYKQTYNASGNGNLSTVSSATKAKGVEFRLANLNGQHIRMGTDKTTQAAQT
FTGKVTNGSKSYTLRYLASYVKKPKEDVDAAQITSYVGFSVVYP
>SEQF2266_AEE66923.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMNKRHAGASALMALALLAGCSDVNQLLGNEESVDYKSTRRGDPLSIPPDLTQANNDPRYKAPASGTATYSQFQQQGLQ
QQASAGQNTNVLPERADMRVERDGDLRWLVIERPPEQLFSKVVDFWTDTGFTVSVNNPQAGIIETDWAENRAKIPESWLR
QVLGSVLETAWDSGEREKFRTRVERVNGHTEIYITHNQMLEKRVGSDGGQVQWTHGKEDPGLNAAMLARLMVYLGTDVDA
ARKLVAQAEAAPQAPKVQSVRAEGAMLVVDESFDRAWRRVGVALDSGGFAVDDRDRSAGEYFVRYVDTDTGAQNEQPGFF
SRLFSSDKKAQAPQYRIRLTGSGTQTQVTVLDANGQRDSSATAQRMLSVLKDKMV
>SEQF2266_AEE66924.1 dihydrodipicolinate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQFQGSLVALVTPMQPDGSLDYDAYRSLIDWHVAEGTDGLVVVGTTGESPSVSMEEHAELIRVAVEHAAGRIPVIAGVGA
NSTDEAIHLARHAKAVGAQAGLSVVPYYNKPNQEGIYRHFRAVAEAVDLPTVLYNVPGRTVADMSNDTVLRLAEVPGIIG
IKEATGDIARGALLLREAPAGFQVFSGDDPTAAALILLGARGNISVTANVAPRLMHELCTAARGGDVPRTRELNARLARL
NKALFIEANPIPVKWALAQMGHTALGYRLPMVELSEQYHSLVRTALQEVGLL
>SEQF2266_AEE66925.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66926.1 glutamine ABC transporter periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIKAKVAAVLIGASAALLGAVSTASAQGRELVVATDTAFVPFEFKQGNTYTGFDIDLWAAIAKELNLKYKLQPMDFNGII
PGLQTKNIDAALAGITIRDDRKKVIDFSDPYYESGLAILVSEKNDSIKAAKDLSGKSVAVKTGTATVDFMKSQVPDAKLK
LFPNIDNAYLELATGRVDAAVHDTPNVQYYANTAGKGRVKVVGTVKSGDFYGIAFPKGSELVPQVNKALATLKANGQYDA
IYTKWFGKQP
>SEQF2266_AEE66927.1 glutamine ABC transporter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDFDWSVIGTALPNLLDGTLMTVKITFWGLVGGFVVGALIGVARAYGPLWLAGLAQVYVAVIRGTPIVVQVMFIYFALPL
MIEGMRVDAVAAAIATLIINSGAYIAEIVRGSLLSVHKGLKEAGQAMGLPFYKILLYIIGPVAFRRMIPPLGNQCIISLK
DSSLFIVIGVAELTRQGQEIMASNFRAVEIWSAVAIVYLILTGTMALGLRMLEKRMRIL
>SEQF2266_AEE66928.1 glutamine ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMVEFHNVTKKFGDSTVLDGITLDIDAGEVVVVVGPSGSGKSTFLRCINVLETINDGDLLVGGQSVKGDAAQVREIRRE
AGMVFQQFNLFPQMTALENVMFGPVHTRGAARAEARRQAEELLGKVGLAERMNHYPSELSGGQQQRVAIARALAIKPKLM
LFDEPTSALDPELRHEVLKVMRDLAEEGMTMIVVTHEMEFARKVGSRLIFIDCGKIAHDGPPAELLSNPPSQRLKDFLQH
VS
>SEQF2266_AEE66929.1 guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFPGLKYASSGLLAALRLGRRTGKKGRTPPSPSPGAQEAVDAAASPVASLAPLTEIISTYLDPKEVERVREAYRFADQA
HLGQFRASGAPYISHPIAVTEICAGWKLDANALSAALLHDVMEDQGVGKHELAEKFSPEVAELVDGLSKLDRLDFATKAE
QQAESFRKMLLAMARDVRVILIKLADRLHNMRTLDAVNPEKRRRIARETLEIYAPIAHRLGLNLLFRELQDLCFAAMYPN
RYQVLYRAVLAARGNRREVISKIEDAVRAALPAAGIEAEVTGREKTLYGVYRKMTEQKKSFSEVLDIYGFRVIVHTLPEC
YLALGTLHQLYRPVPGKFKDYIAIPKVNGYQSLHTTLVGPYGTPVEFQFRTRDMHHIAEEGVASHWLYKDADLTLNELQK
RTHQWLQSLLDIQSQTGDSGEFLEHVKVDLFPDAIYVFTPRGKIISLPRGATPVDFAYAIHTDIGNQAVAAKVNGEFVPL
RTELSSGDTVEIITSPASRPNAQWLNYVRTGRARSEIRHYLRTVKYEESVAFGERLLEQAMIELHLPVPSTDDPQWDKLA
RSSGTSSRDEILADIGLGKRLAAVVARRFAPEHDLIATTAAAVDQITSARAAPILIQGSEGQAVQLAPCCGPLPGDPIIA
GMRLGHGLVVHTSDCPVALRARAREPERWINVAWDAQTAKHLPTRLDIVTRNERGVLGRLAAEVTAADANIVHVTMHDDA
VSTVSLHLTVQVDSRKHLAQVIRAIRHVPQVQKIVRVKG
>SEQF2266_AEE66930.1 DNA-directed RNA polymerase subunit omega [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARITVEDCLNQIPNRFKLTLAATYRARELVQGHAPRLDSKDKPTVTALREIASGLTGLEMLRKVPT
>SEQF2266_AEE66931.1 guanylate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPSGNVFMVVAPSGAGKSSLVRALLDRDPSLVLSISCTTRAPRPGEQDGREYRFVDQAEFARLRDAQQLLEWAEVHGN
FYGTPRDRIDEATRAGHDVLLEIDWQGARQVKQRYPEAIGIFVLPPSIDELESRLKARGQDAPQVIARRLLAAGGEIAHA
PECEYVIINQEFSVALTELVQIISAARLRFSSQAVRNAQLFSQLGIPAAH
>SEQF2266_AEE66932.1 putative cytochrome C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKHALIHRLALASLLAAALPAAPALAADAPPAFTPPAADAIPDNEFGKVVREGEQIFLHTPQRAAKFVGNDLTCASCHLD
AGRRADSAPMWAAYVLYPAYRAKNGHVNTLAERLQGCFRYSMNGESPPADDPTLVALQSYMYWLASKAPTGVKLAGRGYR
KLPAPPQKPDYLRGKTAYAQYCAVCHGAEGQGQKNGRHWVFPALWGEHSFNWGAGMHQIGNAAGFIKANMPLGQAGLLSD
QEAWDVAYFMNAHERPQDPRYQGSVAQTRAKYHDSDDSLYGMEVNGHLLGSAAPPSGGKLRAAGK
>SEQF2266_AEE66933.1 cytochrome C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHPHRLVRCRWPVLSALAVAALCSPAAHAQAPAPADAARIASQGADGVAACVTCHGAKGEGNPAAGFPHLAGLGSGYLYE
QLTALANGSRANPVMAPVAKGLSDAQRQALAEYYAGLSAPFDADRLAATHLGEPAKADTGAWLAVRGAWDRNVPACNQCH
GPGGIGVGTAFPALAGQSAAYIAGQLRAWRQGQRPPGPLALMPAVATRLSDAEIDAVSAYYANLPKQAAAPRPEAAK
>SEQF2266_AEE66934.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQANANSGVKVALVTGAGTGIGRAVALEFLAQGYRVVLAGRRREPLEQTRIAAGEDGVRALVVPTDVAREESVRELFDET
QRAYGRLDVLFNNAGRGAPAVPIEELPVETWRDVVDTNLTGMFLCAQAAIRLMKAQQPQGGRIINNGSISAHAPRPFSIA
YTATKHAVTGLTKSISLDCRPYGIACGQIDIGNAATEMTERMAAGILQADGSTRQEPRMDVAHVAHAVAEMARLPLDTNV
QFMTIMATNMPFVGRG
>SEQF2266_AEE66935.1 hypothetical protein BPTD_1564 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPPTRKARLLSLSLPAFLTAPLLALGLSLSPDTAQAALSPKARPSLQGLRLAGEPTVPTLRDRVVQAGLDAIGTPYSWG
GDDPADGFDCSGLVLFVYRHTAGLELPRTARAQRGAGRTVARKNLRPGDLVFFATRGRGVTSHVGIYIGQDQFVHAPTRG
SKVRVDSMDNRYWNKRFVGARRYLDTPAAGGTLLAASEN
>SEQF2266_AEE66936.1 AMP nucleosidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSDYSIAQLHCPDPVPFEAFDSAVAATDRLIELYRRNTGFVRELFHEVVGGRELSGRVRAYYPAIRIGVQTYDPIDSRL
SYGHVAEPGEYQTTITQPHLFRDYLIEQIGLLLQNHRVPVEVGESDMPIPLHFAFPDGTYVEGEHIENLRRPLRDLFDVP
DLAVTDDAIVNGSWRGQPGEPRPLAPFTATRVDYSLHRLQHYTATAPTHFQNFVLFTNYQFYVDEFCVWARGLMASGGGD
YDALIEPGNRITRRGDQAPVEAAAVRLPQMPAYHLVRPNHSGITLVNIGVGPSNAKTITDHIAVLRPHAWLMLGHCAGLR
DSQRLGDYVLAHGYVREDHVLDADLPTWVPVPPLAEVQVALEQAVEEVAGLSGWELKRIMRTGTVATIDNRNWELRDQGE
LVQRFAQSRAIALDMESATIAANGFRFRVPYGTLLCVSDKPLHGELKLPGMASAFYRRQVNQHLEIGIRALERLREMPPE
RLQSRKLRTFMETAFQ
>SEQF2266_AEE66937.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTAFNNIRQGLSEAIAHAKGNVHGMRVHRPRQVDVKAVRAKVGMTQEQFAAQFGFSPATLRHWERGDRTPRGAALVLLN
VIDRNPQAVIEALA
>SEQF2266_AEE66938.1 hypothetical protein BPTD_1569 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRSMTAFGNARADLEQGSLALELRSVNSRYLDLYFRLPDELRHVETPLRELLTAKLARGKVEVRVSYTRAASTELSTLD
PQWLRSLAAQLDNARAVLPEVAAPRLVELFNWPGQRGNDALDPQAWGAACMQAAQQALAQMQEGRAREGERLAAMMRECA
DGVGRIVDGVETHLPQLLADHREKLALKLREAVESAFPGGFAHITGPELSERLTQEATLFALRIDVAEELSRLRSHLEEL
RHLLGDGPAKSDAKRGGSAGKRLDFLFQEMNREANTLGSKAGSLEVTRAAMDLKLLIEQMREQAQNLE
>SEQF2266_AEE66939.1 ribonuclease PH [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSAADTLSRPSGRAVDALRPFSLERGFTRYAEGSVLVRAGNTHVLCTASVLEKVPPFLKGRGEGWVTAEYGMLPRATH
TRGDREAARGKQSGRTQEIQRLIGRSLRAVFDLRLLGERTLHLDCDVLQADGGTRCASITGAWVAAADAVALLMQRGDLA
HNPIRDAVAAVSVGLVDGRAVLDLDYQEDSACAADVNVVMTGSGAFVEVQGTGEGATFTRGELDTMLGLAEGGIAQLVRA
QREALQ
>SEQF2266_AEE66940.1 hypothetical protein BPTD_1571 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMIPSPSDHPSARLAEFTAGLRYEDIPPAVLRRAEDLFLDSLASILAGAGAPPVQAIARYAAAMGPADGPSQNLVTRTG
TTPLFAAMVNAAACHVVEQDDVHNGAVFHPAAVVFPPALAVAQALGRSGRDLLTAAVAGYEAGIRIGEFLGRSHYRIFHT
TATVGPLAAAVTVGHLLRLDAAQMLHALGSAGTQSAGLWEFLRDAADSKQLHTAHAAAAGITAAYLAQDGFTGAQRILEG
AQGLAAGMSSDADPSRLLDGLGQRWTLAETSFKYHASCRHTHPAADALQHVMREHGLRAADLAAVETLVHQSAIDVLGPV
TAPATVHQSKFSMGTVLALIALRGHAGLTEFDAAPGDAEVAALRDKVRMTLDDEVDRAYPRRWIGKVNVTTTDGRRLHGR
VDEPKGDLGNTLSRPEIEDKVARLARYGGHATESEVRALIDRVWRIAEQERVGKLLSE
>SEQF2266_AEE66941.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAHFDLTDLQLLVHIGDWHSLTRGAEKSHLSLPAASTRVKNLEEHFGTQLLYRTSQGVTLTPSGEAMLRHARTVMQQVE
QMRGDMQEFARGVKGHVRVLANTTAMTEFMPAVLARYLAAHPDVNVELRERLSYLVVRAVADGSADIGVVAGCAPDQKLQ
FIPYRKDRLVVVTPAGHRLAAEESVAFADTLADDYVGLSEWSAIHPFLVQAAASLGRTFKFRVEVGNFEAVCRMIESGVG
IGVIPESAALRYARNLDIALVGLTDEWAVRELQICVKNLDSLPVFARELVETLVADGDAAG
>SEQF2266_AEE66942.1 methyl-accepting chemotaxis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKKLKLAAALSATLAFFVLLFAAAAGAGVAVLRDNQAAIEALGRGNIERASDLGDTTSWLFQARAVLADAKTYMEGGLE
EQRDAALAQAATLLEQVRASQERLRANPEMAAQGASLYDEVLAGYDALAVQALAPLHAALKGWNGIEANRLAERALPQAA
ERYIEAVDAFQGYAREQGRAAVADAARVLERMVLGAAALLALVAVLAVVIRLGFRRAMLRPLTEAGRHFDRIADGDLTAA
IAARGDNEIGALYSAMRRMQGGLTRAVESVRHGVEEIHTGSGEIAAGGVEMSGRTARQAGALQEAAASMAELAGTVRATA
EHADQASRQAAGATELARQGGTAVAQVVASMRDIASGAQRIAEIVGLVDSLAFQTNVLALNAAVEAARAGPQGRGFAVVA
GEVRSLAQRSAQAAREIKGLIDDSSARVASGVQQVNLAGATMGEIVQSIDRVTQLVAGISEASATQAAGIASVNLAVADA
ERATQENAAMAEQTAAAAASLEAQAQALRQAVAVFRLAGAAPRSGGAGGQLVALDQQRQVAVLDLLLDAGGGRGEVLRAN
VAA
>SEQF2266_AEE66943.1 hypothetical protein BPTD_1574 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISSSAADLHADAGLAAILQGGLLNPCYQPVADLAQDRIFGHESLIRGPHQSVLHMPDALFAAARRDGLHAELELASLQA
GARRFIELDSPGNLFLNLSGAVLVACWRHYGSGLPVMLLADSGLAADRVVIEITEYDPVGGDLPALNQALACLRASGMRV
ALDDYGVGNASLQLWAELAPDLVKIDRYFFNGISRDERRLQLVRSMVSTARQLNSTLVAEGIENADDLRTVYELGTRYAQ
GWFLGRPENEPRTDLPTAARASLQPACATQPTRIPGHTALALRVEAPPVMLARHTNDDVQRLFQEHRHLHAVAVLDTDSR
PVGIINRRDFSEHYAQRYTRDLFGRNPCSTFMNPDPVLVDVHTSIDQLSHVLLSDDQRYLADGFVITRGGRYDSLGTGEA
LVRSVTEMRLEAARYANPLTSLPGNIPISQHIAHLLDHALDFVVCYADLDNFKPFNDVYGYWRGDDMIRLCADSIKRHCD
ARRDFVGHVGGDDFVVMLRSTDWRLRIERIIAEFNLRALDLYDDQGRHDGGIRAEDRYGVLRFFPCVTLGIGALEVSPVE
LGSHVRPENLASAAARVKQQVKHGNLALLVQRYQLPARAA
>SEQF2266_AEE66944.1 putative deoxyribonucleotide triphosphate pyrophosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAEILNPNLRRVVLASNNAGKLREFSALFAPLGIELVPQSELGVSEAEEPHATFVENALAKARHASRHTGLPALADDSG
LCVVALGGAPGVHSARYAQQPGGARSDAANNALLVRELAAAGDRRAWYVALLALVRTENDPCPLIGEGLWHGEIVDAPAG
EHGFGYDPHFYLPQQGCTAAQLAPEHKNRISHRAQALAQLLDKLRATGPVDRP
>SEQF2266_AEE66945.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66946.1 coproporphyrinogen III oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAITIPIRNLGGPAAGARVLAPAGATLTSLPPLSVYVHVPWCVRKCPYCDFNSHAAPGEIPERAYLDALRADLEQAVPEV
WGRQVISVFIGGGTPSLLSAAGLDELLAMLRACLNLLPDAEITMEANPGTAEAGRFRDYAASGVTRLSLGIQSFDDAQLS
RLGRIHDAAQARAAIAMAQQTVERVNLDLMFALPGQELEQCRADLRQALAFGTEHLSLYHLTLEPNTVFAKYPPELPDDD
ASAAMQDMVEETLAQAGLARYEVSAYARRGARCRHNLNYWEFGDYLGLGPGAHGKLSFHDRIERQARLRNPDSWMQRAMA
RDGSHVAESRVVGAGELPFEFMLNALRLKEGVAAPSFGERTGLSLAAIAHQLEAATRRGLLDADPTRLRATALGWRFLND
LQEMFL
>SEQF2266_AEE66947.1 glutamine synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASPKDVLKQIADNEVKFVDFRFTDTLGREHHVSVPTSAVDEDKLESGQAFDGSSIPGWKGIEASDMLLIPDLDTANLDP
FREEPTLILSCDVVEPSDLKGYDRDPRSLAKRAEAYLKSSGLGDTAYFGPEPEFFVFDGVTWNTDMSGTFVKIKSEEAPW
SSGLEFEGGNMGHRPGPKGGYFPVPPVDSFQDMRSEMCLLLEQMGVPVEVHHHEVAAPGQLEIGTKFSTLVQRADWNQVM
KYVIHNVAHVYGKTATFMPKPIVGDNGSGMHVHQSIWKDGQNLFAGNGYAGLSEFALYYIGGIIKHARALNAITNPGTNS
YKRLVPHFEAPVKLAYSARNRSASIRIPYVGNPKARRIETRFPDPLANPYLAFSALMMAGLDGVQNKIHPGDPADKNLYD
LPPEEDAKIPTVCASLEEALAALDKDREFLTRGGVFSNDMLDAYIELKMGEVTRLRMTTHPVEFDMYYSL
>SEQF2266_AEE66948.1 nitrogen regulation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPMTNVDAFDLLATSVFLLNERGHIEYANAAAEDLFGRSRKQLRGLSAATLFDNPEDLQSAIDSAAAGKFADVRQLASL
RRVVESVEVTVTTVSLSGQAWPVLIETREIEQRVLADRNQRLVDEIESHRELLRNLAHEVKNPLGGLRGAAQLLEAELPS
AALAEYTQVIITEADRLQALVDRLSGPQRVPLAARPVNIHEICERVCALIQAEFRDAVELVRDYDASVPELRGDAARLMQ
AVLNVARNAAQELVQQKPGADVPAPRVVLRTRVARQVMLAHRQHRLALVVSVLDNGPGVPEHIRERIFHPLVTARAGGTG
LGLSLAQDFVQQHGGIIEFESRARHTEFRLVLPMEPPL
>SEQF2266_AEE66949.1 nitrogen regulation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPVWIVDDDQAIRWVLEKALARAGIATRSFSRAADVLQALAADVPSVLVSDIRMPGGDGLELLRQIKERNPGLPVIVMT
AFADLDSTVSAFQGGAFDYLAKPFDVNEAVALIQRAMQEGEPAADAGAAGEPAQNGERWVMTQSSSTAMQEVFRAIGRLA
QSKVTVLITGESGTGKELVARALHGHGARAGGPFVALNAAAIPRDLLEAELFGHERGAFTGANTLRRGRFEEAHGGTLFL
DEIGDMPIELQTRLLRVLAEGSFYRVGGAQPVRVDVRIVAATHQPLEQRVEQGLFREDLFHRLNVIRLRLPPLRERVEDI
PALAQHFLATSARALGVPVKRLTPDALAVLARFDFPGNVRQLENFCHWLTVMAPGQTIDRNDLPPEIRAVEHQQAAARQA
EPAAAAAAAGTAPAPAEAPDAAPRNWHAALLRDAQFRLERGEPAVMATLTRQFEKILLQSALDASRGRRVEAASRLGIGR
NTITRKLRELGIDDE
>SEQF2266_AEE66950.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRPRAAPPPGQPITPDLLVMVDAIARHGSFAKAARELGKVPSAVTYAIRKLEDGLDMLLFDRSGHRAALTPAGQALLAE
GRHVLQSLDALASRVKRVATGWEGELRIAVSAVLPWTPLYDLIEDFRALAGATTLRFSAEVLSGNWDALASGRADLLIGA
DAAGAPSGAYRTQAMGQTQFAFCVAPHHPLAALGRPLSARDIAAYCAIVVADTSRDLPPRTRGLLREQPVIVMPTMQAKI
DAQVRGIGVGHLPLTLAAPYLAQGLLATCPTDDVVPLTEQVVYAWRDPNPGRALQWWLERLRSPRLCESLLGVS
>SEQF2266_AEE66951.1 hypothetical protein BPTD_1582 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTLRRSAERGHANHGWLDTHHTFSFANYYDPAHMGFGPLRVINDDRIAAGRGFGTHGHRDMEIITYVLDGAIAHKDSMG
SGSTIRPGDVQRMSAGRGVMHSEFNPQPDAATHMLQIWIEPDVAGIAPEYEEKRFPEADKRGRLRQLVSPDGADGSLRIH
QDARLYAGLFDGTESAELPLAAGRRSWVHVARGSLVVNGQRLGAGDGLALQDEAAVRLGDGEGAEVLVFDLP
>SEQF2266_AEE66952.1 hypothetical protein BPTD_1583 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSILNNAPQSAVQTIVVPRTSDLGGFEVRRALPSAQQRSVGPFVFLDEMGPVQFPAGVGMDVRPHPHIGLATVTYLYEGS
LVHRDGAGNVQTILPGEVNWMTAGRGIVHSERTAPESRLAPLRMYGLQMWVGLPKEHEETDPGFVHYGTQAQPVVEGEGV
RAQVIAGSLFGQTSGVRTLSPLFYGDVQLQAGATVVVPPEHEERAAYLVEGTVDIEGQAYEPGLLIVFAPGVAVTIRAQT
AARMALVGGEPLDGPRFIWWNFVSSSKDRIEQAKEDWTRNRFGQVVPGDETEFIPLPPPRS
>SEQF2266_AEE66953.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66954.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHTTFLPRSARTRFSERGSGWLAGASLIALAVLAPVAALAWWALHADLSHWTHLTRYVLPQAMANTMILLAGVGVLVTML
GTGAAWLVTAYEFPTRRTLTWALLLPLAVPTYIIAFAYLDLLHPIGPVQGAIRAVLGYDSPRQFRLPDLRSIYGAIFVLG
FVLYPYVYLSTRVMFMTQAASLLEAARTLGAGRVGVFLRVALPMARPAIAVGVSLALLETLNDIGASEFLGVQTLTVSVY
TTWITRSDLASAAQIALTMLVFVIALILLERHGRKRQRYANTQRMRAMQPRRLHGPAAALAAVLGWIPVVLGFVAPALYL
IVETYKRLHLVGGVSDQLWAGLRNTLMVAALATIVTLLCGLVVAWAGRSLRESASFNPGRTCGRIASLGYAVPGTVLAIG
LLAPFAWLDHTMSTLFGWNGLLLIGTTGALVCAYTIRFLAISTGGIEAGLARIPASLEQASRLLGETSAGTLRRVHLPLL
RPALAASALLVFVDTMKELPATLLLRPLNFETLATWLYAEAARGTYEEGAVAALAIVAAGLIPVILLARTNLKMGH
>SEQF2266_AEE66955.1 putative iron binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSTKRSSLIPLLRALALAGVATFSAQALASDEVSLYTTREPKLIQPLLDAFAKDSGIKVNTVFVKDGLLERVRAEGDKS
PADVLMTVDIGNLIDLVNGGVTQKIQSQTLDSVVPANLRGAEGSWYALSLRDRVLYVEKDLKLDSFRYGDLADPKWKGKV
CIRSGQHPYNTALVAAMIAHDGAEATEKWLRGVKANLARKAAGGDRDVARDILGGICDIGLANAYYVGHMKNAEPGTDAR
KWGDAIKVVRPTFATAKDGGTHVNISGAAVAAHAPNKANAVKLLEYLVSEPAQTLYAQANYEYPVRAGVKLDAVVASFGP
LKVDTLPVAEIAKYRKQASELVDKVGFDN
>SEQF2266_AEE66956.1 ferredoxin--NADP reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAFNTERVLSVRHWNDTLFSFTTTRDAALRFHNGHFVMIGLEIEGKPLMRAYSIASANYEENLEFLSIKVQNGPLTSRL
QHLKEGDTILVSRKPVGTLVVDDLKPGKHLYLFGTGTGLAPFMSIIKDPEVYERFEKVVLVHGVRWASELAYADFIEKEL
PGNEFFGDIVRDKLVYYPTVTREPFRNQGRITQLVDSGKLCADIGLPQLDPAVDRAMICGSPHMLADIRAMLDKRGFEVS
PGVGEPGDYVFERAFVDK
>SEQF2266_AEE66957.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTTLDELQAFVAVVDTGSITAAAEQLGLTVSAASRTLGRLEEKLQTTLVRRTTRRLELTEEGAAFLQHARAILASVGEA
EEQMAARRMRPAGRLRVDAATPFMLHVLVPLIAGFHARYPEVELELNSNEGIVDLIEKRTDVAFRIGVLKDSTLHARAVG
TSRLRVLASPAYLERRGAPTRTAQLAQHALLGFTQPETLNDWPLRDADGAVLRIRPTIASSSGETLRHMALAGLGIVCLS
DFMTGEDRRAGALVQLFARQTLDVRQPVNAVYYRNTALAARITCFVDHVIETLGARPFDA
>SEQF2266_AEE66958.1 2,5-diketo-D-gluconate reductase B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIPSFGVGTFRLTGQTVIDSVRNAIDLGYRAVDTAQIYGNETEVGQTIAESGVARSELFVTTKIWTDNYARAKLLPSLR
ASLEKLRTDYVDLTLIHWPAPGNGVALPEHMEALAEAKALGLTRRIGISNFNIALTRQAIAAVGQGEIATNQIELSPYLQ
SARLTAFLREQGIAVTSYMTLAYGKVLKDPVLARIADKHRSTVAQVALAWALQQGYAVIPSSTKRENLASNLLARGLALD
ADDMARIAALERNGREVDPEGLAPAWD
>SEQF2266_AEE66959.1 putative translational inhibitor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKQIIHTDAAPAAVGPYSQAVAATGAKTVYLSGQIGLEPGTGDLVSENFDAQVRQAFANMQAVIKEAGGTLDDIVKLTL
FLTDLNKFAAANAIMAELIPQPFPARSTVGVASLPKGAQFEMEAVLVL
>SEQF2266_AEE66960.1 ATP-dependent DNA helicase RecG [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLHLPLRYEDETRVTPVSSLRPGFAAQVEGEILRSEVLYRPRRQLTAVLADDTGELQLRWLNFYPSQQKQLTVGRRLRAR
GEVRGGLFGREMVHPRMSSADQPLPASLTPVYPSTDGLPQPTLRKAIGQALARADLSDTLPEEARRRYGLAEFAPAVRLL
HAPPPDAAEHELMERIHPAWRRIKFDELLAQQLSLAAARAARRVKRAEPLPASQDEDGLVARLYEALPFALTGAQQRVVA
EIAADLAQPYPMHRLLQGDVGSGKTVVAAIAAAQAIACEAQVALMAPTEILAEQHFRKLVGWLEPLGVAVAWLSGSLSAK
ARREAAAAVADGSVQLVVGTQALIQDHVMFQRLGLSIVDEQHRFGVGQRLALSRKGETGRGVIVPHQLNMSATPIPRTLA
MTFFADLDVSVIDELPPGRTPVVTKLVADARREEVIGHIAHAARQGRQAYWVCPLVEESEALELQTAVDTHEAMRAALPD
LRIGLVHGRLPQAEKAEVMRAFREGEIDLLVATTVIEVGVDVPNASLMVIEHAERFGLAQLHQLRGRVGRGTAESICVLL
YQAPLSQVARQRLRAMFETSDGFEIARRDLEQRGPGEFLGTRQSGLALLRFADLEADVAIAEQAREAAVWLRAKHPEAVA
AHLARWMRGREDFLRT
>SEQF2266_AEE66961.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLTELKYIVAVARERHFGRAAEACFVSQPTLSVAIRKLEDELGVTLFERGGTEVGVTPIGQRIVAQAQKVLEESASIKE
IARQGHDPLAGPLRVGVIHTIGPYLLPRLVPEQIARTPQMPLLLQENFTVRLVELLRQGEIDCAIMALPLPEAGLVMQPL
YDEPFVVAVPHDHEWAQRKAIDAQDLKQQTMLLLGSGHCFRDQVLEVCPELSRFSASSDGIQRTFEGSSLETIRHMVAAG
IGVTVLPFTAVPNPPQPKSLLRYLPFDGETPERRVVLAWRRSFPRLAAIEALAQAVYACGLPGVRMLDEEAASAQVD
>SEQF2266_AEE66962.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAVLADTRSFTAAAQRLGVSKSLISLRMKALEQELGVSLLLRTTRSVRPTEAGALLVERARPALDTLEDSLGEVRNLAR
APRGRLRLTAPVALGRQHLGIWLARLGQHFPDIALEVYLSDRFVNLRQEGYDFALRHADQVSDAYVSKRLCATRAHLVAS
PAYLARHGRPAHPSELARHRCLLYRGDERSPQWSFAPRQGRGAAVHVKPVDCLSVNNSELLRESVAHGLGIAMVPDFSLG
DCADLEPVLPQWDCYAGFGRSLYLLKPFSATPTEAHRVVEQALAEHFRPGFATPA
>SEQF2266_AEE66963.1 aldehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANQTAQVAHWIGGQAAYGAEHGLQDINDPATGEVAAQVGLGGGDTVAQAVAAARAAQPAWAAKSPLHRARVLNRFLALL
EDNKETLARMISREHGKVISDARGEVMRGIEVVEFACGAPELMKGAMSINVGGGIDNWVQREPLGVVAGITPFNFPVMVP
LWMMPMALATGNAFVLKPSPLDASPSLALAEMLGQAGLPAGVASVVQGGVQAVNALIDHPDVKAVSFVGSTAVAHQIYER
SAREGKRVQALGGAKNHLVVMPDADPEGAADALVGAAFGSAGERCMAISVAVFVGGAAEAVMPHILRKARALKVRRGMQE
DAEMGAIVSAAARDRIAAYIASGVDEGASLLLDGREIAAADCGEGCGEGCGNGYWLGPTVFDRVQPSMRIYREEIFGPVL
ACVHVETLEQAIDLINGHDFANGVSLYTDSGTAARAFVQGIEVGMVGVNVPIPVPAAWQGFGGWKQSLFGDLHVYGEEGV
RFYTRQKSVMQRWAAKAAGMSFAMPRSG
>SEQF2266_AEE66964.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKPTKNSSAAPRINIGISDKDRAAITGELSKLLADSYTLYLMTHNFHWNVTGPLFNTLHNMFMAQYTEEWNALDSIAER
IRALGHYAPGTYREYAKLSSIAEPDSVPDALEMVRMLVKGNEAVAKTARAAFDKADAANDQPTADLLTQRLDVHEKNAWM
LRSLLQ
>SEQF2266_AEE66965.1 C-terminal region of a putative polysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLGASIREIDPGYAGLTSLQRSLSEAHKREFRSQRAQEATPADLMASAQRIIEASPLDRDANIELAVQNLRTGNLSESRR
PARRRAGVPR
>SEQF2266_AEE66966.1 putative N-terminal region of capsular polysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIISTIGSCRVAGPVTKLQAQRSFVLDNRLLYGFTHNTKETIQAIRFMRGELRLPESLWPFISDQPFRNGNSTPPPQDAH
YVVEISSVKVLELDGLYLQLVRFKEALSVCPDLRKIFFDHPGADQRGQRLQLLQATPSFARLATHIQHALTHTVVRSQTA
AEIEEDLHAIAQLLGPKLVLVTHCNAKNATGELIAERAKMVARVAQAAARLGLVSVDPGALLAGFGQERGMPDEGLDTAH
YTPAFAKLVGKEISDKLLGPAITDDAADSLHNLDFRACMERSKQSAQAHEWDLALLFANRAIELKPGSGSAYVLRARAVT
ALDQTEDMLEAWSLALATDSNRTPYVLRQAAEAAFYMRDHERAREWAEASLQKEDDDKTALLLGRIYTRLGMNTQAEQVF
RRCAASDPARSLRFAARAHTPLADAASMVNALTTTPAADPGSVDGVRQTVLKRATREVRHAGRAGALLPSLGAFYAVRTL
PSEHGAAHDADLINQAYRRLLRAYEDTPEYQNSDEAIALLADLAALPEVDPRYIQRAAKMLHAHGRKQAATKCWEHLAGA
ELPAGRDTVALAASKLSQLEAHRTAASVYRRLANSGAMDTATAQEYIDKCLRALARSVRACITEERLRDAEQAGGFRSNC
RCAGSALQARCWRRGPAGWPR
>SEQF2266_AEE66967.1 hypothetical protein BPTD_1601 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEHDNNTVRHMPAPAARRAAAPDRLRQLTQENELAYSRLEQERAARVQAEKDLAGVKALLRETNQQLAKQRRTLTWQFGE
AVTRARTLKDYVLLPYRLIKLSEDHRRQSRHAPVVRKHASAALPAETASAIKEALEYVKRVRSPEVILWIGRQPWPAEVR
AKVFCEVAKWARTSYPQIAEQIVQQLLGLDPAAPHVRQLAFSLYDAGIVDASAQLLRAARTAGATFSTAERLRAERIEHA
QGILAQSIEPAARGDYTFDFDAQGPIVILSPVSILQGRNAASNALHRFALSMQARYGDTMVISLAAQHAESADAAPGQQA
DAALHARTGLVVDGVAYRHAPAISRQTPSFQDVCAAMAETVLAATVRQQPRAVLAWDDAYCALGASAAAQTLRVPYGLVL
QSLDFFQKTAANHLLSERARVDLNLLTLAARQADLLALGSPALQGALENLLDGSRPVALVPPLPLPPMNHRKEAPPDLAA
TLRRLEGKRVFAVTEDEPAVATARALIDLYAEISFVQPDAVLLVMSNGKAAAAMRHHAVAIGLQEGQVVFAPPASDAISR
EQLLRRVEIALFPYVDNRAEVSLVPSAAALLECMALGVCPAVGPAPAYAAHVEAGRNGVPIDLNAPAAETAAHLQQVLGE
AGELGKRARESVQRDLPWHDYDEAIGALLLQAATPQPHILGRRAEPQLLHLKVS
>SEQF2266_AEE66968.1 putative glycosyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPGDTPLRPADFIGLAPISPRPVAAGAPLISVIICARDAAPYINNALQSIQAQTYPNIEIIAIDDGSTDNTFQHLSAAA
AQNSRINIARTKNHGVYAARNMALQRAKGEFITFLDADDIMLATRLQDQAALLQASGACAAVSRLLRLTADGQLAAPRVF
PFVRHNPCSLMIRRDALAVIGQFEEMRFGADEEYEHRMQVLLGFHSIARSRAVQTVALHRPQSLTQHGATGLGSDQGRQR
RIAYRETWMRRHASLAPLRTP
>SEQF2266_AEE66969.1 putative polysialic acid transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSALTVQARVIGSLIFRETRVRFGGTRLGYLWALIEPILHVAVLSTIYVVWGRQAPVGNLQMFFITGIMPFFLFSHTSS
RLARSISSNASLLRLPPITNMDIVFAKALLQALTWVAVFAILLFLVMLGGKLILPQRLEECAAAALFTFLLGFGMGLINA
VLNMLFKSWEHLYSALTRPLYLLSGVFYLVDALPEQARRVLVWNPLVHAIEWFRAGYFTHFSSLTLDRGYLIKWAVGSVV
LGLCLERAMRRRLHTR
>SEQF2266_AEE66970.1 polysialic acid transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
METAMDQDTIISLRNVCKGYRSKKGIRRILDDVSFDFRGGENLAILGGNGSGKSVLLRMICGMELPDSGTVQRAVSISYP
LGFAGGISSNMTGRDNVRFIARIYGCDVPDVERFVYDFSELGRSFDLPVVTYANSMRARLSYGISMALRCDVYVVDEMAA
VGDVNFKRKCLEVFAERSRGATIIMAANAPTTVRRFCSHGVIMQHGAMAHYGPLDETIARYTQSAPAPAPAAEAEPAVDT
VDAEQS
>SEQF2266_AEE66971.1 capsule polysaccharide export inner-membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSTEKTYTGPRLPGMTPGKPANYLRWSAIALIGISGVLLALYLFFIASDQYVSEARFGLRAGSQMQQASANRDGHSSMG
SGAMATELFVDSFAVVDYVKSRQIVQELDKELNLREMWSKPMIDFWYGMNQDETEEGLWRQWNRMVDIEFDMSTGAIILR
VRAFSPEESLQLAQAILQASEKLVNQMSAKSREDSVDFARVEVGIAEKRLAQARVQVQDLRARTGVLDPVKEAEANLQLA
AKVRGDVATAAAELDAMGRGGLRSGPAYERVKARHEALMRQLKDLNDHQISGGRSENGNTLSKLLREYESAETERQFAEA
YYTGALKTLEDARGLAARQVLYTVIASQPQLADESLYPRRFTDTALGLLGLFILWIVAVLVVYAVKDHA
>SEQF2266_AEE66972.1 capsular polysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFSFLSRIRKPRRADTAAGPTGGPASGPTILDLLEAALAEPGESEEAGRELLQQARQVLERHAAVHKPAAALPELLDYVR
RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE
AKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLAALR
RLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFVGPVLMINGSLGAGGAERQFVNTAVAMQSAIQQGQSIAGY
GVLGPVQVVCRSLRSREGADFFAATLRDAGIPVSVYSDMQAWGGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSV
PSVVHIWQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYADWLGVD
ERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPHVRFIMVGGGPLL
ESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGGAGEAVQEGVTGLTLP
ADTVTAPDVAEALARIHDMCAADPGIARKAADWASARFSLNQMIASTVRCYQMP
>SEQF2266_AEE66973.1 capsular polysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMPPKLFVLGSCRVHRPARLLHDGGLVQPLTAGISGYIHSTREAVQRVQWLADRTRPDSQLLPFMFPAGRTPVVTPARA
DELAQADAVLVEAASERSVSVNGVFLQKNLVVKHLVRELGDEGRNWWRSLVRAGEVAPEAYEAVAGLYRDQAEETVLAGG
LRVLREARCAEDSEAVVRADLMYLALRLGKPVLVVTHVDAERADGRRIAARVRHVARIKAAARGLHQVHVIDPLDAAPDW
PSARLLASDGADMNHYSPEFEPVLAGYMHTRIRAALAASSGALAPSQFLPEYQDGP
>SEQF2266_AEE66974.1 putative capsular polysaccharide export protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNHRLIRCLSIALLALLSGCSILSGSGPTRSAIMDGGSTDATGAKLGSYDLVDLRADTIAPYVLVKAVSKDGATSDGYVG
NMRVMPGDVLRILVADSMETGLFAPLAAGGTVFEAVRVAADGSISLPYAGRLKVQGKSLAQIEQLVKGSLRNTAAVQPQA
MVDLADDRSNSVLVAGAVPRPGRFGGNKGPLTALDAITQAGGSTLPAYQADVVIRTGSKVQRIPYQQLLNGRNVAVEPRS
ELVVEPNLKRFVAMGALTKPGLHELPSNQTNLLDALGVAGGLNDRAADATGVFVFRLDGRNADGRPRPTVFRLNMRNPES
MFLAKQFELLPEDVVYVSNAPMYEWEKIITPIVQVLIVGQRVGTY
>SEQF2266_AEE66975.1 capsular polysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPKKFSNPADVHLAVVGLGYVGLPLAVEFGKKRPVIGFDINERRIAALKAGHDHTLEVEDDELARAAQLSYTAEREELGK
ANVFIVTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATEEDCVPVLERVSGLKFNQDFYAGYSPERI
NPGDKAHRVNTIKKVTSGSTPEVAELVDQLYNEIITAGTHKASSIRVAEAAKVIENTQRDVNIALINELALIFNKMGIDT
EAVLQAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYHPEIILAGRRLNDSMGGYVVSQLVKAMAKRRIHVEGAR
VLLMGLTFKENCPDLRNTRVVDIVRELGEYHVDVDVYDPWVDPAEAEHEYGITPVAKPAAGAYDAIILAVSHHQFVEMGA
EAIRKFGKAEHILYDLKYVLAPEQADLRL
>SEQF2266_AEE66976.1 capsular polysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNRFETTCAQLRAQPQKWLVTGCAGFIGSNLLETLLGLDQAVVGLDNFATGHQHNLDEVRAAVTPEQWARFTFIEGDIR
DLAACQRAVQGVDRVLHQAALGSVPRSLKDPITTNEVNIGGFLNMLVAARDAQVQAFVYAASSSTYGDHPDLPKVEERIG
NPLSPYAVTKYVNELYADVFARSYGFSSVGLRYFNVFGKRQDPDGAYAAVIPKWTAAMIKGEDVVINGDGQTSRDFCFVE
NAVQANLLAAMAAPEGANQVYNVAYNARTTLTELFEHLRRTLAGQGVSYEKAPVYAEFRAGDVRHSQADIGKAGKLLGYE
PAYDILRGLEAAMPWYTQFLR
>SEQF2266_AEE66977.1 capsular polysaccharide export protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIELHSSGIARIPYLTELLGAPVTRYRRFWPPGGAAPRAVAGWGARPSAAPARRRARSLGVPYIALEDGFLRSFGTGRHF
PPLSLVVDRLGIYYDATRESELECLLASSRTLLDGIEDAVPEAMELVRERRLSKYNQGCFLATGVPADGRRRVLVVDQTE
GDMSVTLGCAEAATFEAMLAAARAESPGALICVKTHPEVAAGDKSGYLSRVTDDADTVALRHDMNPLALLEQMDRVYVVS
SQMGFEALMLDKPVTCFGMPWYAGWGVTDDRQRCERRGRARSVEELFAGAYFHYTRYLDPVLHRRGTIFDVIDWLTRQRD
MAQRLPSRVIGVGMRRWKAAALAPMLALKPGQAVFAADAARARDLGQAAGDALVHWGARAPAGVAELAEQSGCAVLAVED
GFLRSVGLGSDLIRPLSLALDGRGIYFDPRQPSDLEHELNRGGFSPGELASAARIRALVVAHGITKYNVAQPQPADWPAR
GREIVLVPGQVEDDASVRLGCDEVRTNLDLLAAARAAHPDAYIVYKPHPDVVSRNRRGRVALREARRHADHVESALSVVS
CIQACDVVHTMTSLTGFDALLRGKRVVTYGKPFYAGWGLTEDRAADWPRDRRTRRLSLDELVAGTLLRYPLYWDWELRGY
TTCEAVLTHIFETRERLQREGRLQGLRAGYARRQVRKLQTLWLAR
>SEQF2266_AEE66978.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE66979.1 putative arylsulfatase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAGAHAQAQGEAAKPQASGKPPNILVIFGDDIGQANISAYTRGVVGYTTPNIDRIAKEGIIFMDYYAENSCTAGRSSFI
TGQSPRRTGLSKVGVPGVDVGLQDRDVTIAQALKAHGYVTAQFGKNHLGDRDEYLPTKHGFDEFFGNLYHLNAEEEPERP
YWPQDPKDPVVKAYKPRGVIKASADGKIEDTGALTSKRMETIDDETVGAALDYIDKHGKGDKPFFVWMNTTRMHIYTHIR
PEHQGKSGMPGNDYADGMWEHDQDVGKLLKKLDDLGIADNTIVVYTTDNGPNQFSWPDAATTPFRNEKDSNWEGAFRVPA
MVRWPGHIPAGVTKNGMVSGLDWFPTLLAAAGEGDIKEKLLKGWSAGGGKDYKVRLDGYNQLEYLTGKSDKSARNDFYYF
NDDGLLVAMRMENWKIVFCEQRAPGGFDVWKDPFVCLRVPKVFNLRMDPYERADIVSDQYYGWLSKNAYLAFIGSAKASE
FLETFVEWPPSQRPASFSVDQVQEEVDRKIMQYFEEQKKKQGK
>SEQF2266_AEE66980.1 putative nonspecific acid phosphatase precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDRHTTEGWRRWAARLGAAAMALLLAACAAPRQQAASVDELPSWNDGPSRTAIVEFVRAVTRSGGPDFVAADERIAVFDN
DGTLWSEQPMYFQMLFALDRVKSMAPRHPDWARRQPFKAALQDDHAALAKGGDVALMKIVGATHTDMSTDTFTRSVRYWA
STARHPRFDRLYTELTFAPMRELLDYLRAHGFKTYIVSGGETEFMRSWTQQAYGIPPEQVIGSSFVTTYGVRDGEPTLWR
HGKLEFNDDGPGKPVAIQRYIGRRPILAFGNSDGDLQMLQWTAAGDGKRFAGLVHHTDAQREWAYDRDSRIGRLDRALDE
ARRQDWTVVDMKTEWKRVYAFEQP
>SEQF2266_AEE66981.1 hypothetical protein BPTD_1617 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRWLPLACAALLALGLAGAPRAQDAPPLRVTARLPAGAQAQAGATLRLELDVMTTTWFTQPPRLPALTLPGVMVTPPSG
EGELVRAEHNGVAYSGLRYTYLLSPTAAGQVQVPALAVSAEVGPGKTPASASSAPLSFTVGGAAGAQPAPHGALTVSQDF
ALAPDPLVAGGRVTRSITQRAEGVQAMLLPPAPLADAPGFKRYAREPEVTTLTDGRGGFVGGQRIDRADYVAEQAGELSL
PAVTLAWRDGAGGQPRQQARPGRTFAVAAAPAVAPPFSLTDDLARLRHGLRWVLPAAWLAWAAGGALALLVLWLGWPWWR
QGLCRLRAAALRRRARRRAGEPWHWRAWRREARRDSGTLSAFYRWLALAAGAPDLRGATATLDEAAQGAAAAALRDAYGR
APARAGWRVRLGMASRQWRGNWRARRAAAPAHGLPEVLNPARAARPRS
>SEQF2266_AEE66982.1 hypothetical protein BPTD_1618 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDIDLSAFHFLRPWWLLAVPLAALLWWARRGERGAPGRDLRIAPALLPYLVLRTPGSRGPRPIDALALFLALGGVAAAGP
AWQRDEPAYLDNVAPLIVALDLSASMDGADVPPTRLEAARRVLRDLAARRAAARTGLIAYAGSSHLVLPPTDDAALLDLF
AQALATGLIERPGRDADGAIALAAQALAAERAGGTLLILTDGADRARMDAVRRQAQAARDMQVLVMAVGVNGIDTQALQE
LARAAGAALGSLTGGPDDQDWIALHAQAHFRAVQDAQSGPVHWKDAGYWLCWPLALLALLAVRRGWSVAWSAGVLVVAMA
GMPQPARADALADAFLTADQQGRRAFEHGRYDAAARHFHDPNWKGRAAYQAGDYRAALAAFSTLPSAEGYFYVGNTQTRL
HRYDAALAAYDRALALRPGWQPAVVNRGIVARLLAAMAQTQQDQPAEPPDRTIADRSAQAGKMSQAPVAQAGSEEAWLRN
LTLSPARFLRSKFAVEDAAAGTRP
>SEQF2266_AEE66983.1 hypothetical protein BPTD_1619 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWRLEYPWLLAAAPLALAAYRWLPAYVQGRQALRLPFFDAMATLTGKSPTRPGVQRGRAQLWLNVAVWLLLALALARPQW
VEPPLTHVEPMRDILLVVDISQSMDSEDFRDAQGRPASRWQAVQAVVGDFIDKRPDDRLGLIVFGAGAYPQAPLTRDHAA
LRLLLQRTAVGMAGPNTALGDAIGLGIRMLDHAGERDKILILLTDGNDTASAVPPARAAELAAQHRVVVHTIGIGDPAAS
GEDRVDFDALRDIARIAGGRFFRARDQASLQEVYATLDRITPHEVRTLRHQPKREDFWMPLGAALALLALWHGGAALAAW
RSARPDRRARREDAWT
>SEQF2266_AEE66984.1 hypothetical protein BPTD_1621 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRAAHPVHPPLPELMALEEAVGGLSFVAGQPLGSVLAGLHGSRLRGRGLDFAELRRYVPGDDLRQLDPRASLRYGKPYV
RAYTEERDRPAMIVADQRMSMYFGSVHAFKCAVAARLAALAAWTAYRGGDRVGGLVFDDDGVRAFKPLRSRDRVQALLAE
VARANAGLSAGRPERPAGAGLNAALRGALAHAPHDCLVCIVSDFAGADAETLRTLRLLARHNDVVAMLVFDPMAQDLPRR
GRLVVTQGELQLEIAVGRQRERQPLADFFSGRLREVADLLRRSRVPLLSIDTAEDEVVQLRRALGRLQTGARR
>SEQF2266_AEE66985.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANRDGIVALEQAVSAAVLGQAAVIRHVLVALLADGHVLLESLPGLAKTRTVKALAAHLDATMRRIQFTPDLLPSDITGA
DVLQQDADGRQRIEFQQGPLFGNLVLADEINRAPAKVQSALLEAMEERQITVGGVTRPMAPLFMVLATQNPIEQEGTYPL
PEAQMDRFLMKIRLDYPAADDEIAMLALLRAAPQPDAAGATRLAQEELFACRDAAAALYVAPAVDRYIVDLVNATRRPAD
YDAELGRWIQIGASPRGAIALDRAARAHGWLAGADFSSPDDVRAVAHPVLRHRLHLSYDAVADGVTAEQVIDRLLDTVAV
PA
>SEQF2266_AEE66986.1 hypothetical protein BPTD_1624 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSRFAWRFCNAGLALALAALPGAARATEGALGRLVTGTTVQPNAGVVSPQPITVLSLGQLYLDGRIGGSREVPVAGKTS
LGLDAEMALTLATLMKTWDTGPGRWNFASSLTVPYLWLKTTATLAGERGRAARESDIASNLFDLNFTPLIAGYHFSETQH
LALSLSIWAPTGKYDADALANPSLNNWTFIPQVAYTGMFLEHGLQLDAVANVQFYTRNTATDYRNAPIFGLELMGRKLFG
NGMGAGLIVGTQQQLGPDKGPTADRLNGFEGRDWALGPILTYDRKLADQRSLSFSLRWTPTVSSTRRLDSDSTVLGTVAL
IF
>SEQF2266_AEE66987.1 hypothetical protein BPTD_1625 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLIRRFAHALAVVGSAGFLAAPAAASTGTYPDKPIHLLVAFSTGGVLDTLARTMASELSTRYGQSIVVENRTGASGNIG
TDLLARAKPDGYTIGMGTIATHGINPALYGERLPYDPIKGFTPLALLAEQTNIMLVNNDLPVTSIPTLIEYLRANPGKVA
YGSAGNGSSQHLSGQLFKLAAGVELLHVPYRGSVPALTDLVSGQVQLMFVDVPAALPFIKSGKVRPIAVTAAHRSSAFPD
LPTVAEQGLEGFNVRAWFGVLAPAGTPAPIAEKLSADMIAAVQQPAIRERLEALGMDIKTLDGPAFGQFIQDEIARWDEI
VKRSGTRLE
>SEQF2266_AEE66988.1 short-chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRLSGRNALITGAAVGIGAAMARRFCAEGASVLLGDIDAERGQALAAELAATGARARFARLDVTDEDSVRQAMELAEAE
HGPLHILVNNAGGSSLNDRSVVEFALEEFWRAINIDLLGTVLCCRHAIPRIAAAGGGAVVNMGSIAALRGLKGRDAYTAA
KGGVHALTRSMAVEFAEQRVRCNAIAPGAVLSERMARFIDEDPRVAAAVSRHLLGLPEPDEIAAMAVFLASEESRHVTGS
IFQIDGGRAAAA
>SEQF2266_AEE66989.1 hypothetical protein BPTD_1627 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVEAIETFHWGAIFQIVLIDILLGGDNAVVIALACRNLPHRQRIKGILWGTAGAVLLRVLLIAFALVLLDIPFLKALGCL
LLVWIGVKLLAPHEDAHGNITGGTSVLAAIRTIILADFAMSLDNVIAIAGAAQNAQADHQLYYVIFGLCVSVPIIVWGST
LVLKLIDRFPLVVTLGAGLLGWIAGGMLITDIYVVERWGEPAPMLKLAVEAAGALVVVAAGKWLAARRRHARPTHDESAS
TTPGG
>SEQF2266_AEE66990.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE66991.1 high-affinity branched-chain amino acid transport, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLLEIHGLGITFGGLRAVHDVAFSVEPGEIVSVIGPNGAGKTTLFNMISGIYRPGAGRVVLDRDDVTGMAPFRLARRGM
SRTFQNLQIFQNMTVLENAIAGFHLQEQGALLSDLFNLRASRARARRAEEGARALLQRVGLERAAEREAASLSYGSLKRL
EIARALALQPKVLLLDEPAAGCNAVETEEIDHLIAEVAATGVAILLVEHDMKMVMRISNHIVVLDHGEKIAEGPPDAISR
DPAVIAAYLGTDSQPGDRPC
>SEQF2266_AEE66992.1 high-affinity branched-chain amino acid transport, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTVQGLRSCYGRIEVLHGIDLQVDSGEIVTVVGANGAGKTTLLRCLSGVQPVSAGAITFRGEALAAVPAHRRLARGLAH
SPEGRQIFTNLSVEENLRLGAYLYADDRVERDMDDAFQMFPILREKRHLAAGGLSGGQQQMLAMARALMGRPSCLLLDEP
SMGLAPIIVQQIFDVIRGLKALGVTVLLIEQNAYGALQIADRGYVMETGNITMQGAASALIADPRIRAAYLGI
>SEQF2266_AEE66993.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARTRSADYENIRDTIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYG
SNEPKTRFLQIVKLFLEIYATSRDRHVVMLTCLDALPEDQRKALIAKQRELIAYVRDALLQLRPDMAANRTLAHVDTMLF
FGMINWTYTWYKADGSVSPDALAERTVQLFLDGYLNLPSA
>SEQF2266_AEE66994.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTGAAPRPLPAAFAGRSNVFELRNLADVQRLQPAFLAGRRLLVLGGGYIGLETAAVAAQAGLSVQVVERASRVLERVAC
PATAAAIRALHQRHGVLIHEGRTVAGTEGDEALTGVELDNGLRIACDLVVAGVGVAPQTALAEAAGIDCDDGILVDAYGR
TSAPDVWAAGDCARFVLGGEPARLESVQNAIDQAEAVADDMLGQGRPYQPVPWFWSDQYDMKLQIVGLNRGYDAVVSHAS
AKGESHWYFRADRLISVDALNDGRAYMVGKKLLEAGRAVGRGEVERPGFEPMQLLRDQAEGRLR
>SEQF2266_AEE66995.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66996.1 putative capsular polysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAETFWLALAPAWAGGLVLSWALEALLRPPVQPPWRRPAWMLLLHAGVWTLLFALELALFRRPYFGAINVLAIEAVLVLV
SAAKARVLREPFVYSDFEYFTDALRHPRLYLPFLGWPAALLLACGYGLALWAGLALESSATGARTAAWAAHAAPAPFWGA
TLALAAAGAALAVLAGHRDAGLTYEADQDLRRLGLVATLWLYGRAERQPWTPAMRSGPFGAAPAAAGAGPLPHLVSVQSE
SFFDARRVFGTLKPEVLAGLDALRAEALEHGQLEVAAWGANTVRTEFAFLTGLAASALGVHRYNPYRRLRQPQPSLASHL
RQRGYRTVCVHPFHASFYGRDRVMPWLGFDEFVHLDAFADAPRAGPYVADAALARYVAERLAGQGSQPLYVHVITMENYG
PLHWESVDAADAAAVLDGPLAPGCADLVAYARHLRNADAMFTGLAAAMRGLSRPAGLCVYGDHVPIMAEVYRRLGEPDGR
TDYLIWQAGGQGGAAPGLRRVDELAQVFLRHMGLAPPG
>SEQF2266_AEE66997.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSNWPACVLLTGASGEIGRALALEYAAPGVRLILQGRRLGRLDELVGLCRERGATLSVAAFDIRATERLLAWLEEVNAT
HPPDLAIINADVNIDIGPDRAGERWEDVCMVMDTNLRAAQATVHGLLPAMRARGQGQIALMSSLAAWRGLPDTPSYSASK
AAVKAYGEALRDWLAPQGVRVNVIMPGYVASPMCAAMPGPKPFLWPPGKAARAIRRGLAANRARISFPFPLNLGCWFLGL
AHPAVSSRLLRWLGYGG
>SEQF2266_AEE66998.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE66999.1 hypothetical protein BPTD_1638 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPGPWLMALAACAVASSAWGQQGLRLSKDDLQKRANGVLALMSFSIVPDITTSALNIAGGGGSTSGSTEFYMTQLGGGD
TISKSVPLYLEGVLAASRYDPTFVATQGADSRRIPAKWNSVSATGGIGWDFPLTDELKLRPIFNVALGNVTSDLRAASWY
VGRQTGQDVDFLDRGSLNAYGLGGSLMLDYEHYRPGYEVDVELRYSDIRLRSFDSSAAVRGQATAQSANLWARYRAPTGA
TLLQRPLRYVLELTHSEFLGDQRGVLGFDRLTSVGAGLELDSSAYDVFVTRTRLVGRYVFGNNVSGFSVGLAVSF
>SEQF2266_AEE67000.1 two-component sensor histidine kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRAWAVLAWLWLALPAAVLAEPRHVTTAQFLLQDEAAAAAPDLVPARGPPGDWQSVALPHAGLQRRVVPDPQAGDAALA
WYRLDLDAGGVDDPVLYLPRWQTVGRLAVYGDGKLLYRSGGSAQWSGFNRPVWLPLAAGGAPPATLLLLRISSLDGAGAG
LSTVWVGAAGELRWRYELRRWLQQDLPYLASAVFLALGLFALGVWAVRRKESIYGLFFAASVVFYLRCLHYHAGPFQLLL
DDEWFSWLTITSVGWLAIASYFFAFRLHGRAYPRSERAMLAGMGALTAAMLPVWQIHPHLVLLAPLAYLGITVVALFACL
LAVWGAWRARSRDGLVLACWNLAAIPVAVHDMLLQNYRLSMEHVYLLPYTGIGMFVIFLYVAYRRYVNALAQAAGAQATL
QRRLAERERELERSHRRLREIERTRILAGERERLMQDMHDGLGSSLVSALRMVQHGNSSEGAVAQVLQECLDDLRLTIDS
LEPAQTDLALLLATLRFRLGPRLQAAGLALDWRVGPLPPVSWLTPPAALHVLRILQEVFTNILKHARARRLTVSTRLEPA
HAVIAVIDDGAGFRGGRPAPAAASPGRGLSGMQARIL
>SEQF2266_AEE67001.1 response regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTCTPARPAGSLRIAIVEDDPAFRHAVVAAIAHEPGMSVLAQAQTCADALAMLQGPPADVLLVDLGLPDGSDIDVIWQA
RRLWRDCGIMVNTMFGDDVHVLRSIEAGACGYLLKDSEPAGIVRDICALRDGGSPISPLIARQLLDRLREGLPPAEPPAA
TALSPRERQVLERITLGYTYDEIASELEVSRHTVQTFVRRIYRKLQVHSKVDAINAAPGLRPHE
>SEQF2266_AEE67002.1 autotransporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPARAARAGLLLAGALACSAAAHAELLGVDGGGPSGGAGASGPGLAGQPGNGPAPGLGGDRTMPRPGGNGGAGGGAGAAS
GGSELIHYGGGGGGSDSGGGGGIAIIDPMGAAGGNGGGVAQALSAGADLQSSRGGAGDDGGAMSSGSEPGGGGGGGGSGA
AVLAGGGYRALAVSIVGGRGGAGGAGFESGGGGGGGHGIRIDAADVRIELLATQAAGGQGGDGGAGSGSSGGGGDGGHGL
AGAANDLRLHVAADSTLRGGDGGASRPVTHRAGAGGPDGTGLSLSASRWQVKTAGLIQGGNGGRGEASREFDGGKGGAGG
AGLALAGNMGTLHNRGRIQGGQGATGGTSVLAAPGAAGAGGVGVRIAGNGNRLVNAGRIAGGASADGQQADAVRIDGAGN
TFELHAGSVLQGNAVATGSANVLALGGAQPGVFDVSALAAGAPAAWSGVPRYAGFAAYEKTGAGTWRLTGGNAAALSWTV
RAGRLAVDAEMAGSAMTVAAGGTLGGTGTVGDTTVRAGGALAPGNSIGTLRVAGDLVFEPGSRFEVEADPDGTASDRVVV
SGTADIRGGAVLHVGPEGGFEARQRYVILTAGQRRGQFDAVGSGYAYLAPALSYDATSVALILQRRGAPGSGDLAFADLA
DTANQRATARAVETLPAAHPVYRAIETLPEGAPPAAFDALSGEVHASTRSALLTGARQAQRVNLGRLRDHLGLAWQAGAP
MAASGGAPGAAALPGAPSPAWAEVVGAWQRLDGDGNAAQVRQHVGGLFVGADTALANGWRVGGSLGFTDGRIEVDARASQ
TDVASYTAALYGGRAWDAGAGRLNLLAGAAYTWHDIASERRVDVGDLRQELTADYGASTTQLFTELSYAMPLGMTAELEP
FAGLAWNQLRVRGFTETGGSAALSGASSRDDMAITTLGARVAAPLGAGATLRAMAGWRHAFGDRTPQSTLAFGQGSAFEV
AGAPIARDAALLGVGAGIEVARNAFLDAAYAGEFGGGNRQHTASVVLRWRF
>SEQF2266_AEE67003.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKDNTVFNDLQASLKQAVAIRQGKMPPSRVFKVETVDVKATREKTHMSQTEFAKAIHVSVRTLQNWEQGHRNPTDPAMA
LLKIVASAPDIAVRALRTA
>SEQF2266_AEE67004.1 glutathione S-transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRWTFYTAPGTCALATHIALHEAGADFDLVKLDFGATQQQSPDYLRVNPKGRVPALATEHGVLTENPALLAFIAQSFPQ
AQLAPLGDPFAFARMQELANYLASTAHVAHAHKRRGARWADDPAAHEAMRAKIPENMTAIAGYLESQIIGPWALGERFSV
VDGYLYTVGSWMEGDSVDMTRFPKLADYLARVGARPAVQRALAEMNG
>SEQF2266_AEE67005.1 alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTITITPIQGEIAASIGGIDVRRGVTDDQVQAIERALDQYIVVVLRGQPLDDDLQQDFIQRFGPAIVTNTIKELTSRRSH
RPHLLDITTVDEHGEPLKDRSFMKLYMLANQLWHSDGSHIQPPTRLTALSTRMLPSDPPDTEFADMRAAWDALPADQQEQ
LLDLQAEHSIAHSRTLLGMEVDQFSDDSLNRRPPVQHSLVRTNPRTGRRSLYLSGHASHIIGWPVEQGRALLQQLTEHAT
QRQFVYAHAWQMDDLVMWNNAASMHRALPYTGTEPRLLRWSGVTELEPV
>SEQF2266_AEE67006.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLPTPVQIETICTVDRLRTFTAAAAYLHTTQSAISARVREVEEMLGVILFKRNGRNVETTLDGRRFVEATAPLQQRLAD
FMGTFLEPHAISGRIRLAVGNSSMGRVSSMLSAIEKVLPNICFDLEVMYAAEILRDLEAGRTDIGVFHTPSRLDSKLFIH
TSIGTEPTQWLMSGALRADFERRSPGFGLQTLLDHCQIWCVPKPAFYFDQAIESIASHGGKIRRLSTSGNMPATVDILLA
HGGIGLITDHLSQAHCQNGSLVAAFDGISPPGFDYVLACARSRQSHLLGTVMEIATAAVHAGAAAPALRPVPAR
>SEQF2266_AEE67007.1 hypothetical protein BPTD_1646 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPRNILLACSGIVGMLAVPAHSDQAYPSQPIRIIVPIAAGGSTDVLARSVAQELGKTLGATVVVENKPGAAGAIGAQAV
ARAAPDGYTLLLTSPDPITVLPNYKSNLHYDAAADFAPIQLIAEINYVFATRTDFPAQDLAAFLKMAQQSPGKYTFSSAG
TGSNTQLVTEMLRQRLGVDMVHVPYQGSGPALIAVASGEVDVQATSMPSMKALYDAGRLKALAVTSEQRFKALPAVPTMQ
ESGVNDFVLSAWFGVFAPAGTPAPIQEKLDNALGKVMSSPEIRTRLDSLSMTARPMSLAAFGAYLDTERQRWKTVIDIVG
LKD
>SEQF2266_AEE67008.1 short-chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDRLPVAVVSGAAHGIGWAISRRLAEEGHEIVLLDRDEAALEARWQALRATGHAARVCQVDLSDRAQVLALARRLSEPL
QRVRVLVNNAGISPKRNGARIGFAAVALELDWRPAVETNLTAALILSELVIPAMKSHGRGRIINIGSRVGRSPTGTSALA
SMPYLVTKTAMQGMTRAVARQLAPHGITVNGIAPGRIQTAMGSNVQPALHAAILADIPVGRWGAPADVAHVAAFLASEHA
GFITGATVDVNGGALML
>SEQF2266_AEE67009.1 lactate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTHDALQRRALCIDDLRAWARKALPKGLFEFVDRGTEDEFLLSRNRRSLDELRLLPRVMRDVSRRNCSTHYFGQASSMP
MIIAPTGAAGLLAYEGEYLMAKAAARAGIPFVLSTASIVSMERVAQAGGDLWFQLYMLPDLGASYRLMDRARNAGYRALM
VTLDTPVSPNREYNVRNHFTLPMQISSRNALDVMRRPAWIWNVFFRYLLRNGVPMLENYPDEYRQRLDASGKGRMSLPKT
DSITWESLRALRRHWRGPLIAKGILHPEDARMARDCGVDAIVVSNHGGRNFDAAATPIEALPRIVDEIADKAEVFVDSGF
RRGVDVAKALALGARGVLLGRAPLWGVASAGEPGALHALELMREELLRSMAFLGCESLAALDRGLLAPATLPRNGGWP
>SEQF2266_AEE67010.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLGRFSYRHRAAAHVNLAAIVRRDGQECALDLAAVRAARPELALPASMEAVIRLGRAGVDRCNEALAWASREGAASWFT
PAADLAWRLPLEVGCCVAAGRNFASHVNEGKAFWDGQASAAGLNQDMPAGFIKIASVMTPHDSAVARPCGVLAFDYEVEV
AAVLGGPVPLGTPPERALEHVFGYTLFNDLSAREWARAEMKNQMIAMGKNFPGAGPLGPWIVTADEVPDPAQLELSLSVN
GEPRQHGSCKEMIFTFAQLIAHWSRIGLGAGELIASGTPEGGAISRKPDPAPFFLKPGDIVEAHCPQIGTLRTRIV
>SEQF2266_AEE67011.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRVACIAGSGTERGRAIAARLADEGWKVVQLDGPDGQDARAASPALGIDLGAAADIATIAARLGVDYDEVGAYIHCACA
PPAGVATEPSVALALQAWDAALAIHLEAPLLISQLLVRPMLAKGWGRVLFVGEHADNIPHGAQETAFACSMSGLIGLARS
IASETGPHGVTANVILPGPLQPEPDPFGLGPRCTYETDGFAATVAFLLSDGARLVNGATIHANGGQAMR
>SEQF2266_AEE67012.1 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQSVGTALVTGAAAGIGRAIAERLAQDGHDLVLLDVDAPGLEATKAVVAGHGRRADVHCIDLGDLQAVRRFAAAHEAAHI
SILVNNAAISPKRAGRRVTLSETDLEQDWLRVLQVNLTTPLVLAQMAAAGMQRARWGRIVNISSLAARCPSGLASLGYTT
TKTGLLGLTRALAQELAADGITVNSIAPGRFATAMGENLEPEARQRIVAAIPVGRWGEPPEIAGLVSYLCGPQTGFITGA
VLDINGGAVML
>SEQF2266_AEE67013.1 hypothetical protein BPTD_1652 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRRIPRRLIAALASFSFLIPGAGSHAADLPESYPNRPIKLLYGFSTGGPADYVTRLVGRRLAQELGQPVIVESKPGASS
TIATNLVAQAPGDGYTIMMGAMNQAVNPSLLPDLPFDQQKDLRAIAIAAFTPNVLVVSADSSIASVDEIVARARRAPGSI
SYGSSGVGTSVHLAGALFGTATGTELIHVPYKGIAPAKLDVVAGRVTMLFDSVVSAKKLIDAGRLKAFAVSSANRSALLP
DVPTMAELGWQDFDVSPWYAFFAPASTPDAIVERLNAIIVATMSDPQEQANLLAQGVEPRTSTAREADAYVAAEIGKWGE
LVKRLELKPE
>SEQF2266_AEE67014.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVQRSLAALSHLKFRHIALIQYLLQEGTLRKAARRLSISQPAATAMLSDIENLLGVQLFTRSRQGVAPTAQTLALAPRLR
ILMNDFDELGAMLDRLDTGEHEVLRVGVVPQAFTVLLPRAIEGFRQAGGCHLHTVEGSAQDLLARLLAGELDCVLGRLPP
DVAKLGRDIASLTFVNLYEDDVCVVCGPDHPAARLKKPGYARLAQCDWVLQRISSSVRQALTEAFLRQGLLLPHPVVETP
TYTQALDIVAATRLLTAAPRHTAMAHARSGRVKVLDIALGVAPMQVCLILRKSAEAHPQIVRFRSVIEAMPMRFPGA
>SEQF2266_AEE67015.1 hypothetical protein BPTD_1654 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTVLRILLLGAGLLGAAAASAEWPADQPIKIIVPQAAGGTNDTVARLMGVELGKALGQTVVVENRPGASGAIGMQLASR
SPADGYTLAIASDTASILSATRKMDWRLDHDMAGVAMVGDQPIGVAVSMRAPYASLDELLAAARKEPGTIAFGTSGLGTS
QHIVGEWLTHLAGVQMIHVPYKGGGQAVTDLVSGTTPAAVLGFAPLLGQARSGGIRIVAVTTAERNPAMPEVPTLTELGY
PQITRSQWVGVVAPRDTPPAIVKRLSDAMAAIGAQPAIQDKLREIGLTPKSMDAAQFDAFIHKDVADWGRLVTELNIKLD
>SEQF2266_AEE67016.1 putative NADPH-dependent FMN reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEVLADLPNIDPSRFKQPSAAELFPPGRATHAPRFLLLYGSLRERSYSRLVAEEAARLRRALGGETRLFNPSGLPLVDD
ASEDHPKVRELHELVRWAEGMIWSSPERHGAMSGLMKTQIDWIPLSMGAMRPTQGKTLAVMQVSGGSQSFNAVNQMRVLG
RWMRMLTIPNQSSVAKAYQEFDEAGRMQPSPYYDRVVDVAEELMKFTLLTRDASPYLVDRYSERKEAAETLSRRTAQARI
>SEQF2266_AEE67017.1 hypothetical protein BPTD_1660 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGAPVRVVGILGTAQTLAWASSYYLPAMLADPMARDLGVSTPTVYAAFSAALVASALIGPWTGLAIDRHGGRMVLAGTS
LLFALGLGMLGAAQGLWTMVAAWLVMGVAMGAGLYEAAFSSLVRLYGHHARGAITGITLIAGFASTVGWPLSAWMETLFG
WRGACLGWAALHLMIGLPLNAWLPKAVAAETPSPDAPAAQEGTLPAARPGPQGLATALLAFVFAATWFISTAMATHLPRM
LQATGATLAAAVAVGALIGPAQVAGRLLEFGLLRHVHPLLSARLAALTHPAGVAVLLAAGPALAPLFAILHGAGNGILTI
AKGTLPLALFGPRGYGARQGWLMMPARVAQALAPFLFGLALDAWRANALWLSGGIGLAACAALLVLRARPDPIKP
>SEQF2266_AEE67018.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAEQAVSSLGALAHAQRLSVFRALVVAGPAGLTPSVMADGLGIARNALSFHLKELAHAGLVSVEQQGRNLIYRADFFRM
NALLGYLTKHCCQGATCEVSDSRKNTAGCDAGARRA
>SEQF2266_AEE67019.1 hypothetical protein BPTD_1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKGICAAFAFAALAASWQGPAQAAFPDQPIKLVVPFAPGATIGPLAQLVSEQLSSDLGTPVYTEFKTGAGGNIGADIVA
KSPGDGYTLLLGTISILTINPSLYPDLPFDPVKDFKPVSMLVTTQNILVVNPESKIQSVADLADYARQHPGQATFGSSGT
GSTMHLAGELFSTTAQVKMTHVPYRGGGPARSDLLGGRLTLMFSDLSAVPMVQAGKLRALAVTGSQRDGRIPDIPTMQES
GMKGFDVEPWYGLVAPAGTPDAVIARLNASVRKVFDKQKVRDALQNIGLRPASDLSVAYMAGKIDSDLGKWAPIVKSVDM
KTN
>SEQF2266_AEE67020.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTQATAGDGAAVVAIAGGMGALGRALAQRFKQRGDQVVVLDQATDAAGLPQAGADLALLDVDLNDVASTRHAFDTIARR
FGRLDALVSVAGGFHHETLAEGKVKAWDHMYALNLRTAVVACQAALPLMLARGAGHVVCIGSDAIGRAHAGLGAYAASKA
GVAELVRTLAAETRDQGIAANAVLPGTLDTPGNRRAMPDADFSRWVSLDAAAALILFLASPLAAQINGACIPIVNRC
>SEQF2266_AEE67021.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGPTDMRVSTRQLQAFLLVAEVRSFTRAAEALHVTQAGLSSMINELETQVGIRLFERSNRATALTQAGTQFLPYARQAVE
SLNKGMLELSALNRRQQGGICVGVSPLIASTVLPAVMREFQQCTGRSCEVVDAELEVLHDMVETGRLDATYGTYMRRASR
LKSEYIFGMALRLAGPGRLIPPGLEIAGVEDWARQHDIVLWALPDSNAVQQVVDRYLLEVGAHALRRQEVCHVATVASLI
SAGMGMGFVPTFLADFYDRDTVGQIALPQGAPAVDFYCTSDASNPASSSIHVFSRLLAAHCSAAA
>SEQF2266_AEE67022.1 hypothetical protein BPTD_1666 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLYYRISFVLSVLALAAWAIAVTLYKAPRHGDGYGPDPLGVLLFLALWPVGLLLAHSGLLACLVRGQRPASILQGRYGV
AIHLALGAGFLAYALYRV
>SEQF2266_AEE67023.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF2266_AEE67024.1 putative monovalent cation/H+ antiporter subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLLLVLALPFLGSLCAALLPANARNAEAWLAGLIALACTLLVASLYPQIAAGGVIRADLPWAPALGLQFTLRMDGYAWL
FALIVSGMGALVVLYARYYMSPEDPVPRFFSFFQAFMAAMLGVVMSGNLIQLVMFWEMTSLASFMLIAYWHHRLDARRGA
RMALTVTGAGGLSLLAGVLMLGHIVGSYDMDQVLAAGDIVRADPWYPAVLVLIALGALTKSAQFPFQFWLPNAMAAPTPV
SAYLHSATMVKAGVFLLARFWPMLAGTDEWFWIIGGAGLCSLVLGAYAAIFQQDMKGVLAYSTISHLGLITLMLGLNSSL
GLVAAIFHMVNHATFKASLFMAAGIVDHETGTRDVGRLSGLYGAMPITATLAMVAAASMAGVPLLNGFISKEMFFAETTF
VSGDVLVRWGLPLMATLAGAFSVTYSLRFILQVFFGPPAEDLPRAPHEPPRWMLLPSALLVMVCLVVGVLPGVTLGPILH
LAASSILGEHMPQYSLSVWHGFNLPLAMSFVALTAGVLLYLALRARQRAHPGLVPFIYRFDGRRTFEYLLDASSVAAAWL
LRYLASSRMQVQMLVIVLGTLWVAWLPLRAGGWLAGQARLTPADPAFAILWVVGAACALGAAYQAKYHRLASLTLSGGAG
LITCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIQTGGDEDRPDLRARVRRLRDLGLAGVAGACMAALAYAVL
TRPVGDTISSFFTERALPDGGGTNVVNVILVDFRGFDTLGEITVLGIVALTVYALLRRFRPAPESVELPHQQREQDGMPT
VDETGERPAPDTKSPLPAGPMMIPAVLVRLLLPVAVLVSVYLLLRGHNLPGGGFVGGLVMATAIILQYMVGGVYWVESRS
RLNPQHWVGLGLLAAGGAAVSAWLALRPFLSALAWDVALPVVGHVHLSSVLLFDLGVYMLVVGATVLVLVALAHQSLRAQ
RQAAVEAQAVAQTGSPA
>SEQF2266_AEE67025.1 putative monovalent cation/H+ antiporter subunit C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEVVYALAIGVLAGSGVWLLLRPRTFQVIMGLSLLSYAVNLFIFGMGRLTVGRPPVVSASAPVDAAAYADPLPQALVLTA
IVIGFATTALFLVVLLASRGLTGTDHVDGREPES
>SEQF2266_AEE67026.1 putative monovalent cation/H+ antiporter subunit D [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDWLQHLPIYPITVPLIAGALMLLLPDTQRKTRAGIGLLSSLLQLASAIALLSLAAGAGGIWPDGIGVYLPGDWPAPFG
IVLVVDRLAAVMLALTAVLGLAALIYSLARWDRAGVHFHSLYQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLMLHGS
GIARVTAGLQYIAVNLVASFLLLISIALIYGVTGTLNLADLALRAGTLTGGERSLFEAGAAILGVAFLVKAGAWPLNFWL
VKGYGSAAAPVAALFSIMTKVGIYALLRIGSLLLPTGAPAAFSLDWMFAAGLATLVFGGLGLLANQQLEKLTGYCVIVSA
GTLLTALGMPGVTLTGPALFYLISSVLATGALFMLVELIERTRSFGANVLAVTMDLFDLDDPSTPNRSDDVVGVAIPAAM
AFLGLAFVSCALLVTGLPPLSGFVAKFSLLSAAVTAANTPSVALDAWVLVALVLLSGLAGLIALGRVGIRIFWSSDDRVT
PRLRLMEAGPVAVLLLLCVVLAAGAGPVSAYLDAAAQSLDRPASYVNAVLAKQPARALSEGL
>SEQF2266_AEE67027.1 putative monovalent cation/H+ antiporter subunit E [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMRRYYLALLPLAMLALWLMLNQSASIGQLALGAALALWLGWASSRLRPLRGKPRSLWLLPGLAARVFADIVRSNVAVAR
LVWQRRPDFSPGFIAIPLDLHDPHGLAILACIVTYTPGTVWVDIIDGKLVLHVLDLQNEEAWIALVKQRYERTLIEVFE
>SEQF2266_AEE67028.1 putative monovalent cation/H+ antiporter subunit F [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMNIVLYWSASFALLCFALAMACAAIRLLRGPTAQDRVLALDSLYVSGMLTMLVFGIRAGTPVYFDIALLIALFGFVGST
AMAKFLLRGEVIEP
>SEQF2266_AEE67029.1 putative monovalent cation/H+ antiporter subunit G [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDVDIPLWAGIPAAILLVLGGLLTLAGALGMLRFGHFYARIHAPTLGNTMGACSVLTASILVFSSLSMRPVVHEFVIGM
LLVLTSPVTGMLLMRAAVYRARRADDSA
>SEQF2266_AEE67030.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67031.1 hypothetical protein BPTD_1676 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKIRIQRWCGALALGAGSLMAFGAHAAGTGSGQSQYQMDVQRCNSGDTSQDRATCLREAGAARQESQRNRLDDKQEGRY
QDNAMMRCKNLPASQQQDCITQMTSGNTTTRGSVGGGGVLRETVIQVPAGTPGRPMPGSQMPSGQMPGAAPGGLQPPPAG
TVAPPPVMR
>SEQF2266_AEE67032.1 hypothetical protein BPTD_1677 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDVIALVFDFDDTLASDSTTGFLESIGVDTASFWKDQVDPLLSQQDWDPVPAYLYQMIQLSRQGSHGLITRERLREWGV
RLALHDGVQTLFGRLRAAVRAEHPKVQLEFYLISSGIGDVVRATPIAHEFTEIWASEFVYGEDGGISFPRRIVSFTDKTR
YLFHIQKGLIGREYRNKPFEVNRKVPEDRLRVPFDQMVFVGDGYTDIPCFSLIRSAGGFAFGVWDPKHRDKRSRAWGFIE
EGRVSNLNQARYDEQAELYQWLEEAVTSLAGRIALKSRVYRG
>SEQF2266_AEE67033.1 putative zinc-binding hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALALEQAQEAARLGEVPVGAVVVDAQGEVLGTGYNRTIIDRDPTAHAEIVALRAAARRLDNYRLPGVSLYVTLEPCVMC
IGAMLHARLARVVYGARDPKTGACGSVLDVGAVGQLNHHTTITGGVLAEPCGELLRGFFRARRAKESPV
>SEQF2266_AEE67034.1 muramoyltetrapeptide carboxypeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKKKNPPASHGHDHHEHHGHEPGHVCDAGCAHAPAQASGIYLVSPSSAVRDAAELELACQRLAAEGFQTKVDRAALAVH
QRFAGTDKQRAAGLQRAIKQKHPIVMATRGGYGLIRLLPMIDWRAMADSGKRFVGMSDFTAFNLALLAQTGAVSYSGATA
VRDFGLAKTDELTVALFGEIMRGELEILSFETRDADAFDGRGVLWGGNLATLVSLLGTPYMPKVRGGILFLEDVAEHPYR
VERMLAQLWQAGVLERQKAIVLGSFSDYRLAAHDNGYDMHAVVGWLRKTVKVPVVTGLPYGHTDTKATLPIGKKVGLATE
RGMAHLVIDEHTH
>SEQF2266_AEE67035.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLQTLEVAYGPQTAVVWLNRPDVRNALDPRMIAELTETFMALGADNEVRAIVLAGRGKAFCAGADLNWMRRSAQAGDAEN
RADAQTLATMLHTIYTCPKPTIARIHGPCMAGGMGLAAACDIAVASHEARFALTETRLGLIASMISPYVLRAMGARTASR
WFLSAEVFEATEAWRIGLVHELCEADRLDGQINELLGSFMLTSPHAVAQAKRLIRDVAGAPIDAALLEETAARIAEQRAS
ADGREGLASFLEKRQPAWVPRQDT
>SEQF2266_AEE67036.1 hypothetical protein BPTD_1681 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIHKALWFGLSCIGLVLLMIAFLTPWDHLATGHIGLLMLALIVVAIMLGFPTAFTLMGMGVLFTFLAYFMQHEDGARAV
RQTLDLMVQRTYATMTNDSLISVPLFVFMGYLVERANLIERLFRSMHLALARLPGALGVATLITCAIFATATGIVGAVVT
LMGLLAMPAMLKAGYSVRLTAGSITAGGCLGILIPPSVMLIVYGATTGVSVVQLYAGAFFPGIMLAGLYVLYVMVVAKLR
PDMAPPLSKEERHIPLQPGAEVLRQQGHRHAVPGLLAGLFKRRDPQVTGSFLARNLMLVVAPLAAFVLITGATYDTLTEP
PVVYEIPDELRLGSGDSFDSGLAEPPSEDGGLAEPPGAAAAPETAAAQVEAAEAAEDAAAERLPAPYGFWIFFAVCVALL
AVFYALLNWSRLEVFRLLMSSFFPLALMIVAVLGSIVFGLATPSEAAAMGALGGALLALAYRRLTMPVLRESVYLTAKTS
AMVCWLFVGSSIFSAAFALLGGQGIVEQWVLSLGLTPIQFMLLAQIIIFLLGWPLEWTEIIVIFMPIFVPLLKAFGIDPL
FFGLLVALNLQTAFLSPPVAMSAFYLKGVAPPHVTLNQIFLGMMPFMGIQLLAIFLLYMFPGIGLWLPTVLYR
>SEQF2266_AEE67037.1 hypothetical protein BPTD_1682 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRLIRLVDRLSTFVGQAFAWLIVVLTLHICWEVSARYILNTPSAWAFDLQLMYYGILFMMAGAYTLAKNGHVRGDILYG
FLPPRVQAGLDLLLYILFFIPGVVAMVWAGWYYAGESIAIREHSSLMANGPPIYPFKAFIPIAGAFLLLQGLAEIARCLL
CLRKGQWPSRAEDVEEVDVDKLKEMVHVKDEDIAELDQYVEKGEQTR
>SEQF2266_AEE67038.1 hypothetical protein BPTD_1683 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQHVTQSRRKFISGAGAVAGTAVLGFPAVTRAQGSPVSMRFQSTWPANDIFHEFAQDYARKVNDMAEGQLKIEVLPAGAV
VKAFDLLDAVSAGTLDGGHGVVAYWYGKNTAVALWGSGPSFGMDANMLLAWHEYGGGKELLTEIQKAMGVNVTSLMYGPM
PTQPFGWFKKPITKADDVKGAKFRTVGLAIDMYSAMGAAVNALPGGEIVPALDRGLLDGAEFNNASSDLALGFQDVSKIC
MLQSFHQSAEQFEILFNKNKYDALPKHLKHILAYAAQAASADMSWKAADRYSKDYIKLQKDHNVKFYKTPDAILQQQLKI
WDEMIAKRSAENPLFKKVLDSQRQFAERAGRWSNDTNVNFRMAFNHYFARKQPA
>SEQF2266_AEE67039.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISTANLTIQFGPKPLFENVSVKFGEGNRYGLIGANGSGKSTFMKIIGGDLEPSAGNVSLEPGVRLGKLRQDQFAFEEVR
VLDVVMMGHTEMWAAMSERDAIYANPEATEDDYMRAADLEAKFAEYDGYTAEARAGELLLGLEIAVDQHNLLMREIAPGW
KLRVLLAQALFSNPDVLLLDEPTNNLDINTIRWLENVLNGYQSTMIIISHDRHFLNQVCTHMADVDYGEIRVYPGNYDDY
MLASTQARERLTANNAKAKERIVELQDFVRRFAANKSKSRQATSRLKQIDRIKADQVEVKPSSRQNPYIRFEQNKVMHRL
AVTIEKLSKSYDQPVIRDFSAMVDAGEKVAIIGANGVGKTTLLRMLATDLAPDSGTVKWSENADIGYMAQDVSDQFQQGD
INLFDWMAEHRQPGDDDQSIRSALGRLLFSGDDLPKAPKVLSGGEKNRMTFGRLMLGRHNVMLLDEPTNHLDMESIESLQ
FALEKYEGALIFVSHDREFVSGLATRIIEILPDGELVDYRGGYEDYLASRGIEA
>SEQF2266_AEE67040.1 putative ABC-transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLTFDHVHKSFGSLNVVEGFSSEFKTGELVALVGPSGCGKSTLLHLAAGLEQASQGRVLADGKPVQGPHPSRTLVFQEH
ALYPWLTLRDNVALALEFQNAPKAQARQQAVHWLERVGLGGFDAYYPHQVSGGMRQRAALARAFIAQPQTLLMDEPFGAL
DALTRLSLQDVLRQLIEQEKPSVVLVTHDVDEALFLADRIVVFSQRPARVLREFNLAHRAKSHDLSDLASEKREILRLLG
IEVDSHGHGHGPKVALAA
>SEQF2266_AEE67041.1 hypothetical protein BPTD_1686 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLKQWLSLPLAAALLAAAPAMAAEKFRVGYLRVMDDAQAIVAQEGGYYKKAGLDSELIEFKSGTDLIKAIVGGQLDIGV
LGFTNAVAWASKGADLKVVGGAQQGYHSLLVRDDSDIKDIAGLKGKTLASQAEGSTADVVLKGVVLKEGKLGADDVNVMG
GSPAVAVQSLVGKRVDAAFLFEPYDRIAQLVAPVKQIYEVGQAWPFPCMVVITSGDVLAKRKDDVWKALDAQKEAIDLLQ
NKPADASRLIASYFIAEPTLKTLTRGELPRETVISEAISTQVFTPKLTDKDTNRLQEIADILQAQGSLKTRDGKPYDVSS
IVDLSWQEARKL
>SEQF2266_AEE67042.1 putative permease of ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSSTRVTGARKHLAGVLGVLFILALWQAAAWVLPDFLMPGVPTVAQRLVEDLGQASFHQSLLGTLGRLGAGYGLALAAG
IGFGLVAAVLFFFREVLRSAIVILQSIPSIAWVPLFLIVMGFGNTPIIVVVALSAFFPAALSVMNATESVQRVHVSAARV
MGATRWGLIKRVYLPAVMPELITGAQLAFGNAWRALISAEMLIGFGKGLGRSLAYSGEIADMTGVMTNILVIAVLAALID
QFVLENLKHRLLRYQYV
>SEQF2266_AEE67043.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEATRAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67044.1 hypothetical protein BPTD_1690 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMHTLAAACRHQEEIKKSRFAAYAAPVGTIAEAMAHFAAHSDPAATHNCWAYRIGNEYRFNDDGEPGGTAGRPILQAIDG
QGLDRVAVLVVRWFGGIKLGAGGLVRAYGGCAANCLRAGERLPVIALATVRCRCGFAELPLLQARLAQAGASVRSETFDA
DGAQLEFDVSRAALEELARTFANITRGRGDWDVQA
>SEQF2266_AEE67045.1 thioredoxin 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIVELTKDTFQDAITPDGTLIIDFWAPWCGPCRGFAPVFEQAAEQHPDVTFAKVNTDVEQELAGALGIRSIPTLMVFRE
KVLLFSQPGALSAGQLGELLTKVKEVDMAEVHRDIAQARENGEGEQA
>SEQF2266_AEE67046.1 permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLEKLFQLRDHATTVRTEIVAGLTTFLTMSYIIFLNPDILSSTGMDRNAVFVATCLAAALGSLIMALVANWPIGMAPGMG
LNAFFAFTVVKTMGYTWEQALGAVFISGVIFLFLTISGIRAWLIRGIPHSLRSAIAAGIGLFLAIIALSNANIVVAHPAT
KVTLGDLREPGPLFAILGFFIIAALDALRVRGAILIGILSVTVLSMLLGYNQFNGIFSSPPSLAPTFMQLDILGALHTGF
VHVILVFVLVEVFDATGTLMGIAKRAGLVPEDRPNRLGRALFADSTAIVAGSMLGTSSTTAYVESASGVQAGGRTGLTAL
VVALLFLAALFIAPLAGSVPAYATAPALLYVAGLMMRELIDIDWNDVSEATPAALTALVMPFTYSIANGLAFGFISYVVL
KTCTGRIREVHPATWLVAILFIVRYAFFPE
>SEQF2266_AEE67047.1 glycoprotease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIILGFESSCDETGVAAVCTERGLLAHALHTQIAMHQEYGGVVPELASRDHIRRVVPLTRQVLAEAGLTLADVGAVAYTA
GPGLAGALLVGASVAQALAWSRALPAIGIHHLEGHLLSPLLAEPRPEFPFVALLVSGGHTQLMLVDGVGRYELLGETLDD
AAGEAFDKSAKLMGLGYPGGPALARLAEQGDASRYDLPRPMLHSGDLDFSFSGLKTAVLTRVKAATRDGGELGEQDRADL
AAATQAAIVEVLAAKAIRALKQTGLRRLVVAGGVGANALLRAHLARALKPLRAEAYFPPLSLCTDNGAMIAFAAAERVKA
GLADLREGDHAFTVRPRWDLADIQAG
>SEQF2266_AEE67048.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE67049.1 putative glycerol-3-phosphate acyltransferase PlsY [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPATMVLTAPSLLSSSALIVLAYLIGSIPFAVVVSKLMGLQDPRSYGSGNPGATNVLRTGNKTAAALTLLGDAAKGWFAL
WLARALVPELSWGAYALVALAVFLGHLYPLFLRFKGGKGVATALGVLMAIEPWLAVATIATWLIVAVFSRYSSLAALVAA
FFAPVYYVFGSGAAWHARLEVGLAIAVISALLFYRHRANIARLLKGTESRIGKKK
>SEQF2266_AEE67050.1 stationary phase survival protein SurE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRILVSNDDGYNAPGLEALVEALSGLGELTVVAPETNHSGASNSLTLNRPLTVRTAANGFIYVNGTPSDCVHVALTGLMD
ARPDLVVSGINNGANMGDDTLYSGTVAAASEGYLFGIPSIAFSLIEKGWQHIESAARAARQVVERQIAQPLAAPVLLNVN
IPNRRYEDMKGYAVTRLGKRHPSEPVVRTTTPYGDTVYWVGPVGLAADATPGTDFHATAQGQVSVTPLRLDLTQHSQLDD
VRNWAEPLCVNA
>SEQF2266_AEE67051.1 protein-L-isoaspartate O-methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSDRLRQAMVQRLRAQGIADERVLNAMAAVPRHLFVDEALASRAYEDAALPIGHSQTISQPWVVARMIAAVCEDRAPAR
VLEVGAGCGYQAAVLAQIVREVHAIERIRGLYELARGHLRALRLATRVRLIHGDGMLGVPGVAPFDAIVVAAAGLAIPQA
LLDQLAPGGRLIAPEGSTHQRLVLIERTGATAWSRKELEAVRFVPLRAGIQS
>SEQF2266_AEE67052.1 putative peptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNGQLQLTESQSVAGASAAAASRPVLWAGVLAIALLAGCASKGPRAPVVDLTGQPGASGPTDGSYVVKPGDTLYKIARA
NNVDIENLKRWNNLTDPNQISVGQVLRLSSSGAGGAQTTPVTSSKPQPKPLDQGSAETPAGGMEAGAGGETGGATTPPAA
TVPDPKPARAADAAVINWGWPANGAILQTFNSNTKGIDLAGSLGDPVIAAADGKVMYSGNGVRGLGNLIIINHQNGFITA
YAHNRALLVKTGQNVKRGAKIAEIGETDTTSPRLHFEIRRQGTPVDPMQYLPPR
>SEQF2266_AEE67053.1 hypothetical protein BPTD_1700 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPTLVFDLETIPDVAGLRRLNDWGGEVSDLEVVERAFAARREAVGHDFLPLHLHQVAVVGCVFRDDQGFRVKTLGQPDD
PEAALLSGFFKTIERYTPRLVSWNGSGFDLPVLHYRSLIHGVPAPRYWDTGDEDRDFKFNNYISRYHNRHIDLMDLLAKY
NGRANAPLDELAKLCGFPGKLGMDGSKVWEAWNQGKADEVRAYCETDVVNTWLVYCRFRFLRGELDRVAYDAEVALVRDT
LAASDAPHWKEYLAAWDAA
>SEQF2266_AEE67054.1 hypothetical protein BPTD_1701 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRHAIRSTLAGLTLALSAGVVAAPALAATQEGPAAGHMKEQGRHHHKKMMRDGVWLPGVGPLSKAQIESLKLDAKQQGL
VDQARQAQRDVHKSRRDAGATGRDALKAQLDSGKLDPRALLAESDKRHEQFRAQATQVRDKWLAVWDSLNEAQRGQVTEI
AKANQARMSERHARMQERMQKRHAEGGQSAAPAGAATAN
>SEQF2266_AEE67055.1 hypothetical protein BPTD_1702 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKPLFALPLVLAVCAAAGARAEPTDLGAGFSLSGNAAMVSDYLFRGYSQTDFRPAIQLGFDLTHTSGLYLGNWNSNVSD
FVFTDGNLEMDFYGGWKGEAGGGVGLDVGVLHYYYPGSSSPKGGNYNNTDLYLGVSYANYSLKYSYTPGDFFSTPDTKGT
WYLDGTATFDLGDGWGLVGHLGYQKLKKAQDMDGDALGHYVDYKLGVTKDLSGWVLGLAAVGATRDNWLPTKNGHPSGRL
GAVLSVARTF
>SEQF2266_AEE67056.1 23S rRNA 5-methyluridine methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVDVLNIESLDLEARGIAHRDGKVLFVEGALPGERVTVQTVRRKPSYEIAKVEEVLRPSSQRVAPRCPHFGVCGGCAMQH
LAPAAQVAIKQRALEDTFWHVGKLKPARILPPLYGPTWGYRYRARLSVRVVPKKGGVLVGFHERKSSYVADMRECHVLPP
AVSRLLLPLRAMIAAMSAPDRMPQIEVALGDETIVLVLRHLLPLTDGDIAVLRAFAAEHGVQWWLQSKGPDTVHPLEREH
ADALAYTLPEFGLRMPYRPTDFTQVNHAINRAMVSRALKLLDVQPQDRVADLFCGLGNFTLPLATQGREAVGVEGSKALT
DRAHEAAARHGLGERTRFATLNLFEVDVQWLRGLGYFDRMLIDPPREGAQAVAQALSLLAPGERPRRIVYVSCSPGTLAR
DAAIMVHEGGYALRSAGVINMFPHTGHVESIAVFESLDEATVLQAQAQARQKAREEAERLAEAAAA
>SEQF2266_AEE67057.1 MerR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIGDAAQASGISAKMIRYYESIGLIGPAARTESGYRVYGDAELHTLRFVRRARDLGFSVEQMNELLALWRDRSRASADV
KRIALEHVATLERKADELRQMADTLKHLAHHCHGDTRPDCPIIEELSNTGRR
>SEQF2266_AEE67058.1 hypothetical protein BPTD_1705 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIAFHVPDMTCGHCVKSITQAVQQAVPQALVQIDLAARRVTVEGAAAAEPVAQAIRAAGYAVQAA
>SEQF2266_AEE67059.1 putative glutaredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLQNREGQRVPSVTFPVRENNAWKQVTTDDVFKNKTVVVFSLPGAFTPTCSSTHLPRYNELAPTFFAAGVDSIVCVSVND
TFVMNERAKDQESANVTLLPDGNGEFTDGMGMLVDKKDLGFGKRSWRYAMLVKDGVVEKMFIEPEKEGDPFEVSDADTML
AYVAPQARKPDQVVVFSKPGCPFCVDAKALLKGKGFDPIEIPLDNKVRGRVIGAVSGGDTAPQVFINGKLIGGFDALKAY
LA
>SEQF2266_AEE67060.1 dihydrolipoamide dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTLHTDVAIIGAGTAGLAAHRAARAAGKRALLIEGGQYGTTCARVGCMPSKLLIAAAEAAHAAAHGGPFGVHIDGAVRI
DGAQVMARVKSERDRFVGFVLEGVENIPAEDKLRGMARFVEDTVLRVDGHTEVRAGSVVIASGSRPAVPPPFLALGDRLV
VNDDVFAWDTLPARVAVFGPGVIGLELGQALARLGVQVRVFGVSGSLGGITDPRVRQSARKAFQQEFYLDPDARVLETKR
VGDEVEVRYVALDNTERTERFDYALVATGRRPNVDGLDLHNTSLALDARGVPHFDRHTMQAGQAPVFIAGDANADAPLLH
EAADEGRIAGENAARYPDVAPGLRRAALGVVFSDPQIALVGTPFARLESGTFVAGEVDFGDQGRSRVMLRNRGMLRVYAD
IESGRFVGAEMVGPSAEHIGHLLAWAAQQSLTVAQMLEMPFYHPVVEEGLRTALRDAAARLAQARPQRLAA
>SEQF2266_AEE67061.1 hypothetical protein BPTD_1708 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFSYRHAFHAGNHADVLKHAILVHVLDYMNRKEAPYWVVDTHAGAGLYALGSDWASKNAEHADGVARLWELSGLPPLLAD
YVARIRDYNTDGVLRHYPGSPWLTLDVLRERDRLRLFEMHPSESDVLVRNLERRNERTALRQTTVFAADGFEGVKALLPP
PTRRGLVLIDPSYEDKQDYRRTLTAVREGVKRFATGTFVVWYPLVQRREASEMARQLERLPVKSWLHATLTVRKPAADGF
GLHGSGMFLVNPPWTLHDALKPAMPLLARELAQDDRAGFTLQYRENP
>SEQF2266_AEE67062.1 cytoplasmic glycerophosphodiester phosphodiesterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPLPAWPYSPYIAHRGGGRLAPENTLAAMRVGAAHGFTMFEFDVKLSRDNVEVLLHDDDVDRTSNGHGPAASKTYAEL
AQLDAGSWYAPQYAGEPVPTFSAVARYALANGIACNVEIKPCPGREAETGAAVARAAAALWQDALPAPLLSSFAEPALHA
ARGAAPQLPRALLVDRVPADWLERLRKYDCIALNINQRDASRELVDAVHQAGYRIAAWTVNDPARARLLLDWGMDAIFTD
ELATIRPAV
>SEQF2266_AEE67063.1 peptidyl-prolyl cis-trans isomerase D [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFEIIRTHRRWMQLILLLLIVPSFMLVGVQGYDSFINREPELATVAGQPVTRSEFDQAHRNQLEQLRQRLGSQFDPAMID
TPAMREQLLNQLIDQRLLAVVAADNGFSVSDGTLRNTIAAIPQVQDNGRFSPERYRQVLAAQGMSPTSFEAGLRRDLAVA
RVLDPISQSASVPAEVARSVEAALTQRRTVQLRQFAASDFRAKVTVSPQDIQAWYDANQEQLRVPEQVQAQYLVLDEAAA
TEGVQVKDEDIASYYEQNKSRFGQPERRRVSHIMISIPPGASEEARKAAAAKAQEIAAQAAADPAGFAELARKNSQDTGS
AGQGGDLGWAPLPAPLQQAAQALAKDQVSGVVDTPTAFHILKVTDFQPGSVKPLAEVKDEVVGEIRKQLASARFADMATD
MTRLVYDQRDSLQPTADKLGLKLRTAGGITRTGLLPAEQAGAGSAAGGDDAQLLDNPRVRQVLFSPDVLREKLNSGVIEL
TPDTMLAVRVAAVEPSHIPPLEQVRASIEDRLFGERAAQAARQAGEAALKSVQADASATPEGFAPAIVVSRQDAQNLPRR
VLDAVMRQAPSPLPAYTGVELGADYVVARIEKVEAGQSTEQDLDLLKTQLSGAWGQAEDAAVLRQLRDQYKVQILPEAAE
AIKGDAQSAAG
>SEQF2266_AEE67064.1 acyl-CoA thioesterase I precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAQAQTASAPTGSAPHAVLVVGDSLSAEYGLRRGSGWVPMLAQRVSQQSPNYRVVNASISGDTTSGGLARLPALLRQHA
PAVVVLELGSNDALRGLALDMTERNLRAMAQASRQAGASVLVVGMQIPPNYGRDYTQRFAQVFPAVAEQEKARLVPFLME
GIATNRAMFQADGIHPNENAQPALLDNVWPLLEPMLAQPAAD
>SEQF2266_AEE67065.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67066.1 hypothetical protein BPTD_1714 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQVRKLFVATLIGATAAIGSLAHAAGEDKPKQSVGEYASDATVTTKVKAAFVADKSLSALDIAVETNNGVVTLTGTVGTA
TEADQAATVARDVEGVKQVMNNIKVDPAKAAK
>SEQF2266_AEE67067.1 hypothetical protein BPTD_1715 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLHYAVVFFVIAIIAAVLGFGGIAAGAAGIAKILFFVFLVLALLSILGGVFRK
>SEQF2266_AEE67068.1 hypothetical protein BPTD_1716 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNDIVAGKWKQLTGKAKAAWGELTDDELTRTEGNAERLAGLIQERYGKTKEQAQREVREFFDRNP
>SEQF2266_AEE67069.1 cyanophycin synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEVSRIRALRGPNLWSRNTAIEAIAACSDAECAINGMPDFEARLRARFPQLGVLQPEGQRDAISMAHVLQATALGLQAHA
GCPVTFGRTSPTIEPGVFQVVVEYSEEDVGRLAFELAEALIRSAQDDTPFDLPQALQRLRDLDEDTRLGPSTGSIVNAAV
ARSIPYHRLTQGSMVQFGWGSKQRRIQAAETDMTSAISESIAQDKDLTKMLLDAAGVPVPMGSSVDSAAAAWQAAQALGG
SVVVKPRDGSQGRGVAVNIETRDRIESAFEAAAEISSEAIVERYIPGHDFRLLVVGDTLVAAARRDPPQVTGDGTHTIAE
LVAQVNADPLRGDGHATSLTKIRFDDIAIATLRKQGYEADSVAAAGALVVLRNNANLSTGGAATDVTDEVHPELAARAVT
AARMIGLDICGVDVVAETVHLPLEDQHGGVVEVNAAPGLRMHLNPSFGKGRAVGEAIISHMFAERDDGRIPVVAVAGTNG
KTTTVRLTAHILDCAGHRVGMTNSDGVYVGKQRIDTGDCSGPRSARRLLLHPDVDAAVLETARGGVLREGLAFDRCNVAI
VTNIGMGDHFGLGYISTVEDLAVVKRVIVQYVQPDGMAVLNAADPMVAEMASACPGSITYFAEDRNHPVMATHRAQGHRV
VYRDGDSLVAAQGGAEVAFALADIPLTRGGAIAFQVENTMAALAAAWALGIDWDTIRHALAIFVNDAQTAPGRFNVFDFR
GATLIADYGHNPDAIQALVRAIDTMPARRRSVVISGAGDRRDEDLRQQTEILGGAFDDVILYQDQCQRGRADGEVVALLR
QGLQQAPRTRHIDEIQGEFVAIDAALERLAPGDLCLILVDQVEEALAHIASRVTGQP
>SEQF2266_AEE67070.1 cyanophycin synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRNHSSITMKKKDIEFLDVVTLRGPNIWTYRPVLEAWVDIGELEDFPSNTIPGFYERLSGWLPTLIEHRCSPGVRGGFLQ
RLREGTWPGHILEHVTLELQNLAGLPGGFGKARETSRRGVYKVVVRAWHEQVTRAALQEGRDLVMAAIEDRPFNVPAAVA
RLRALVDSLCLGPSTACIVDAADDRDIPYIRLFEGNLVQFGYGSRQRRIWTAETDRTSAIAEGISRDKDLTKELLSTCGV
PVPEGRLVQSAADAWEAAQDIGLPVVVKPYDGNHGRGVFTNLLTRDEIESAYAVAVDEGSGVIVERFITGNEHRLLVVGD
RMVAAAAGEPAWVTGDGVSTIEDLIGSQINTDPRRGRTENHPLNPVRLDSAARLEIARQGMTATSVPAAGRNVLIQRSGS
VAFDVTDRVHPSVAATVALAARVVGLDVAGVDLVTDDISRPLDQTRGAIVEVNAGPGLLMHLKPADCPPRPVGRSIVDHL
FPADDDGRIPIVGVTGTNGKTVVARLVARLVQKGDCANWAAGRRVLMNRSVDAAVIENDSGVILGQGLAYDRCLVGVVTN
IDDGDHLGDFDINETDRLVDVFRTQIDVVLPGGAAVLNARDPRVVRMAELCDGEVLYFGLDPALPTLAAHLAEGKRAVYL
RAGRIVLARGRDEEALADIAAVPLTHGGRVAFQIENVLAAVAAAWALDIPVELIRAGIETFDIDQADAPWQFTLFERNGA
CVVVDDVHNPSALRALLAAIEQFPARRRAAVYSAGADRNDDALVEQGRLLGTTFDQVVLYDDATVASKRPAGQARSLLRQ
GLEQSARATAIADEADHARAIARVLDDLREGDFALLQSDEAFSGPTIDLVRRWIQQG
>SEQF2266_AEE67071.1 hypothetical protein BPTD_1720 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAQPAMNDSAFQLHRNQAGRLVFTGADGRAHEGVVPVRAFPISAPASGLSLVSADGHELAWLDDVAQLPPAQRPLVEAE
LASREFMPEIRRIVSVSTFATPSSWQVETDRGNATFVLRGEEDIRRLAGHTLLITDMHGIFFLIRDALALDRHSRKLLDR
FL
>SEQF2266_AEE67072.1 hypothetical protein BPTD_1721 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSSVELSVQAGLEHFDAAQWDALAGPQPFVRHAFLRALHDTGCASPGTGWTPCFLALRRAGLLAGAVPLYAKSHSRGEY
VFDYAWADAYARNGLPYYPKLLSAVPFTPVGGARLLAHTHADRLLLARGLIQLARQFEVSSLHVLFPSDDDLLALREAGY
LIRAGVQFHWRNAGYAGFDDFLAAFSHDKRKKIRQDRKKVAAERVSFRWLRGADIDAAALDFFYQCYRHTYLAHGNPPYL
NLEFFRQLHAEMPDALVLILAEQDGQPVAAALNLQADGVLYGRYWGARRYIPGLHFETCYLQSIEYCIAHGQASFEGGAQ
GEHKMARGLLPTPTWSAHWIADTRFAAAIDDFLGHETHAIDEYRDELATHSPFRKT
>SEQF2266_AEE67073.1 hypothetical protein BPTD_1722 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEAASIAVPGAGAGASLRAQALDALMTPAWADKLAAVAAIDAGAPVGAQQDLAEPAGLPGRPPAPQLVPPSQVRQRSVQS
PEGRAALLHALAHIEFNAINLALDAVWRYGGLPDAYYLDWLKVAREEAYHFDLLNRHLSGLGHAYGDFPAHNGLWEMAEK
TRADLLARLALVPRTLEARGLDASPLIRDKLAAAGDADGAAILEIILRDEIGHVAIGNHWYKALCAQRGLDPVAQYAQLA
SRYGAPRLRGPFNLEARRAAGFDEDELRALLQA
>SEQF2266_AEE67074.1 putative peptidoglycan-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVHMNKAYLRLLCATAFAAAAIPALAAPAAATPADLDAYRACLKQLRGDAIKSGVQAATYDAQTASLAPDMDVLGFLDVQ
PEFKTPIWDYMAGLVDEERIEDGRQALARHADVLARAQAEYGVDPATVVAVWGVESNFGKNLGGRPLLTSLSTLSCFGRR
QSYFRGEFFATLKIIQDEHMQPERLAGSWAGAFGQTQFMPSTYLRLAVDFDGDGRRDLVDSVPDALGSTANFLRRAGWQT
GQPWGFEVKLPAGMDLAGTGRRNKQPMSAWQARGIKRVDGGALPAGDTPAALLAPAGAQGPVFLVLRNFDALYSYNAAES
YALAIAHLSDRLRGDLPFARAWPTDDPGLSRAERRELQELLLARGFDIGKPDGVIGVRTRQALQTVQGQLGLPADGRAGQ
KTLKALRTP
>SEQF2266_AEE67075.1 hypothetical protein BPTD_1724 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGLLDSLTSIAGGALGGGDERSANGGMAALLPVLVAQLNNYPGGLTALIQRFQEGGLGEVIASWVSAGPNQPVTPAQLDS
VLEPGMVDQMAQQSGQDRGDVLANLSRLLPGLVDTATPGGQAESGQSFDAGSLLASLSGLLDGKRG
>SEQF2266_AEE67076.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE67077.1 AsnC family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLDAIDHRIIGILQRDADISNAVLAERVGLSASACLRRVARLKENGVIRRIVAVLDPARVERPLSAIVTLEFARHGSEY
RRTFMEQVALEPAVTQCYMVTGEVSCVLIVHMRDMDEYLAFADRLFDQDDNVQAFYTHIVMQTVKDEPVVAVPAAPR
>SEQF2266_AEE67078.1 hypothetical protein BPTD_1727 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPYLSGLMRRSGRLFLTLVKVMLPVMIAVQAAQAWGWIDILGQAFAPAMGLLNLPAEAGMVWMTGAFVGIYGAIAALISL
APALELTGGQFSALCSMLLFAHALPVEQAIVRRAGASFWATAALRVGAALGYGAAVSWFCHATGWLDEPVSLQWLQSTAL
AGEQAGGIWAWVRGTAVSLSFTYLIILALLVALDVMERTGITRAITVALTPVLRVSGLDPRVTPVTILGVLLGLSYGGAL
IIEEAEKQQLEARPRFLALAWLSLSHSLIEDTVLLMALGANGWIVLVGRLLVTLVVVAILARMLGGGGAARRPLGAPAG
>SEQF2266_AEE67079.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDLARKRIVLGLTGGIACYKIAELVRRMTEQGAVVDVVMTEAATHFITPVTMQALSGRPVFVDAWDARVDNNMAHIDLT
RGADAVLIAPASADFMAKLAHGLADDLLSTLCLARACPLLVAPAMNREMWANPATQRNAAQLRADGITVLGPAAGEQACG
ETGTGRMLEAHELLADLIASFQPKVLADRHMLLTAGPTSEPVDPVRVLSNRSSGKTGYALARAAHEAGARVTLITGATAL
AIPRGVTALHVTTARQMHDAVMANANDADIFVAVAAVADWRVKNVSEQKLKKTTEGGGAPALEFEPNPDILAEVAKLASG
PWCVGFAAETEKLAEHAEAKRLRKGIPLLVGNLAHKVMDADTTELVLFDEHGVHPLPAAAKLDAARRLIAEIAARLPAPA
RP
>SEQF2266_AEE67080.1 lipoprotein signal peptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQARAAAPRLAPWLAAAALIIVLDQATKLYFDGAFQYGERLNVLPFFDFTLLYNRGAVFSFLASEEGWQRWFFTALGVG
ASIVIVWLLRRTAGQPRFSLALTLIMGGALGNVIDRVAYGHVVDFLLFYWRDWHYPAFNLADVAITCGAVLLVVDELLRA
RKRPTAQD
>SEQF2266_AEE67081.1 isoleucyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDYKKSLNLPDTPFPMRGDLAKREPGWVAEWEETQVYQAIRAASRGRPRFVLHDGPPYANGDIHIGHAVNKILKDIIVKS
RNMAGYDAHYVPGWDCHGMPIEIQIEKKYGKHLPVTEVQSKARAYALEQIDRQRKDFKRLGVLGDWHNPYLTMNFSNEAD
EIRVLGRILEKGYVFRGLKPVNWCFDCGSALAEAEVEYADRVDPAIDVAFPFTDRGALARAFGLDEVDAGAIVIWTTTPW
TIPSNQALNVHPEIDYALVRVTPAPVHGPLLLLAQERVEPSLKAWGLEGEIIATAKGEALEGLRFRHPLAAAAQGYDRTS
PIYLGDYVTLDTGTGVVHSAPAYGIEDFVSCKAHGLADSDILGPVMGDGKFVDSLPLFGGLSIWDANPRIVEALKLADSL
MLVQKLSHSYMHCWRHKTPVIYRATSQWFAGMDVKPRDGGPSLRESALAGIDATAFYPAWGRARLHAMIANRPDWTLSRQ
RQWGVPMAFFVHKETGELHPRTVELLEQIAQRVEKGGIEAWQSLDPRELLGDEAELYEKNRDTLDVWFDSGSTHATVLGG
KDGVLGGSHGAELAWPADLYLEGSDQHRGWFHSSLLTGCMLYGHPPYKGLLTHGFVVDGQGRKMSKSVGNVIAPQKVSDS
LGAEILRLWVASTDYSGELSISDEILKRVVESYRRIRNTLRFLLANVADFDAVGQAVPYGELFEIDRYALAMTAQMQAEV
QGHYERYDFHPAVSRLQTFCSEDLGAFYLDILKDRLYTTAAGSAARRSAQTALLDITQTLLKLMAPILSFTAEEAWKILA
GSALAKQADAPRVTIFTEVYHALPPFADGEALTAKWTRLRAIRAEVQRKLEEVRSAGAIGSSLQAEVDLYANAADHDILA
SLGDDLRFVLIVSRATVHADADDLRIEIAASGHKKCERCWHWRPDVGQDADHPEICGRCVSNLFGAGEPRTRA
>SEQF2266_AEE67082.1 bifunctional riboflavin kinase/FMN adenylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPSLRIYRYPPPPSQRTPCALTIGNFDGVHLGHQAILARVRQEARARGLVPAVMTFEPHPREYFATLNRRPELAPTRIS
GLRDKLQALAAAGIEQVVVERFDARLAEMSANAFIEDLLVAGLQTRWLLVGEDFRYGHKRSGDIDLLREAGLTHGFEVCT
LADITDRQGHRISSSEVRTALAVGDLDRAAQLLGQPFHISGHVIHGQKLGRELGFPTMNLRVAPRCATRSGIYVVRVLGL
QDRPLPAVASLGVRPTVEDRGRVLLEAHLLDESLDAYGKLVRVEFLHKLRDEEKFADLPSLTAAIAQDAQNARAYFAVHG
L
>SEQF2266_AEE67083.1 hypothetical protein BPTD_1733 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLGEVLQWTYPADAVLSHWLRAYPGMGGRDRAELAQAVYDVLRHLRRYRQFAESGVGPATRRLAILGLAATMNPDVLAEG
LGADQAAWLQRIRHIDVATLPRAVRASVPDWLDERLAQLDDSEALLDALNRPANLDIRVNPLKAERDPMLTVLRAGPAGR
FDPQPMPYSPWGIRLAGHPSVNRWPQFEDGSIEVQDEGSQLLALLMGPRRGEMIIDFCAGAGGKTLLLGALMRSTGRLYA
FDVSAARLARAKPRFARSGLSNVVPVAIDSENDTRVKRLAGKAQRVLVDAPCSGIGTLRRNPDLKWRQHPQSIAEMCELQ
HRILKSAARCVAPGGRLVYATCSLLAEENAEQAERFLAEHPDFERLDAAQLLANRCANLTLSGPYVQLRPDVHGTDGFFA
AVFERRKPSAAATQEPADVAAETGPGEPEDAAG
>SEQF2266_AEE67084.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67085.1 hypothetical protein BPTD_1735 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRLLPALLALAVPAAWAAGPTVQVGDNVTLASYYQIRGADCASLRPPLVRIVQPPRLGTATVVQSQGNSGPGGRCAHTA
VPVTQIVYRGTQPGQDTVVWEVTHQPRQPASRRDSAAIVVVPRN
>SEQF2266_AEE67086.1 fatty acid desaturase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSILSFISGGLTQATWWQIVLFTLVVTHITIVSVTVFLHRSQAHRGLDLHPAVMHFFRFWLWMTTGMVTKEWVAIHRKH
HAKCEKEGDPHSPMLFGIWKVLFRGAELYREESANKETMAKFGHGTPDDWLERNIYSKHSLAGVLTMLAIDLALFGAVGL
TVWAVQMAWIPFWAAGVVNGIGHYWGYRNYNSPDTSTNVFPWGIIIGGEELHNNHHAHGTSAKFSAKWYELDIGWGYISI
LKFFGLAKVKKVAPKLKLESGSKGIDLSTLQGVITHRYEVMARYGDLVKRAAREELSKLKSSRQQDAANCRWTTLRRVRR
WLHRNEEVLQPEQRAEVDQAIAQNQSLSTLVQMRRELGRLWESSSASSEQLLHDLQAWCQRAQQSGIAGLEQFALHLRRY
AA
>SEQF2266_AEE67087.1 DNA helicase II [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMLEKLNPEQRAAVTLEPQHALVLAGAGSGKTRVLTTRMAWLIQTGQASPFALLAVTFTNKAAREMLTRMSTLLPIDTRG
LWIGTFHGLCNRMLRAHHRDAGLPQAFQILDTTDQLAAIKRLLKAGNIDDEKYPPRDVQRFINGAKEEGLRPGDVEAYDP
HRRKLIEIYQLYEAQCQREGVVDFAELLLRAYELLSRNAPVREHYQRRFRHILVDEFQDTNTLQYKWLRLLAGTGAAIFA
VGDDDQSIYAFRGANVGNMADFERDYAHGRVIRLEQNYRSYGHILDSANALIGHNTGRLGKNLWTEQGEGEPVRVIEQPS
DGMEAQWLVDEIRALINDGRMRSEIAVLYRSNAQSRVLEHALFSVGIPYKVYGGLRFFERQEIKHALAYLRLIANPNDDT
SWMRVVNFPTRGIGARTLEQLSDAARAHDTSLFGAVARVGGKGGSNLAQFAQLIGQMAHDTRELPLPELVDHVIEASGLK
AHYQTEREGAERLENLNELITAATVFAAEENFEGLPAGVVPDHDVSGALMPGVVDAPQPDTLGGLTPLAAFLSHAALEAG
DNQAQVGQDAVQLMTVHAAKGLEFDAVFITGLEEGLFPHENSIMEPAGLEEERRLMYVAITRARERLYLSLAQSRMLHGQ
TRYAMRSRFLEEIPEQHLKWLSPRAGLHQGGGFGGAAPAWSSRGDAFGRKPTGTAAPRQPRGMASGVTVGEQQFRVGQGV
RHARFGDGTIIGLSGSGQDAQAQIQFRDVGAKTLALGIAKLDIITA
>SEQF2266_AEE67088.1 hypothetical protein BPTD_1738 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKPILKKRQRTTLAALLLCTAAATHAATQSPALAFDLPAQPLDAALRAYARQAGVALSFDAREAARKQAPALRATMTAQ
AALQHLLRGSGLTWRAAGANRYAVVRAADAAAAWPLEPVRVYGDATRERVYTEQEIAATPASNRDLSALIATHPAIRESG
TAEDGANRGTLNVEDISIHGASPYQNLFLIDGVGATSRVDPANKSRNFTDVPSNPQAYFLDTALLGEVRVFDNSIPVEYG
AFNGGVVDARLRRPSGENHVKLDYRWNGSNLTRQKIAPGNAEDWLQGTPDFTPSWRKRFHTASADIALGERAGLVLGLSR
RISRIERWRLGAVGHLDRPERDDSLDRVDNLLGKFSLRLDADTITDLSLKYADRREHLVSNFFRDTDWRNRHGAQGAVWN
IEHTLRGGKLSAQLGWDRFDSHRNSAHTEFVQHDFVDGRPGFASGGYGKDEKGQRNLTLATRLDLAPIQTGPVSHASYVG
LQVEHTGARFKRYNQSYSYRAVHREDGTEKHFSKVRHLPGSVTLDYTRLGLYASDELTWRRWTLNAGLRYDRDNFLHHRT
LAPRARLDWDVLGSDDTVLSAGWSRYYGGHVLKIAMQEEFSRLSEQVLDHHGDPVPNGRKITRVNYDGLRSPYDDEWAFS
LAQRAYGIRGVLTFVHRNGRDQVTRRGDSRVGYRYTNEGNSRTDGWNLTLANEEAWRLGETLWHAQASWGYQRNKRNLNL
AEGYESSPVERADYVYYNGKRIPAANLPPSNFNLPHKVSLDLTGHWPRHGLTWSNTVNWHGRRKEIAFVDTGPAPEYLDM
YESLSAPSYWSWDTRLIWQPPFARQVTLALDVLNVLNRIAALTTNPRDSLIDARRYRTGREIWLQVGYRY
>SEQF2266_AEE67089.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRASGLTLRRGTKVLLDGADFVVHPGERVGIVGKNGAGKSSLFALLTGALDPDAGNLDLPAGWRIASVQQEIAADAQAA
REFVIDGDTHLRALQAQRAALTDDQGTQIAETEAALIEAGAWSAASRAEQLLAGLGFKPSEWMQPVRSFSGGWRMRLVLA
RALMAPSELLLLDEPTNHLDLDAMLWLEKWLTAYPGTVLLISHDTEFLDAVARAILHFDQAKLQRYRGGYQDFLLQRAER
LRQANIAYERQTREAARLQGFIDRFKAKASKAKQAQSRVKALARMEALAPIHAESGIDIRIPSPDHMPDPLLAMEHMDAG
YGGAEPILRDVTLMVRAGSRIGVLGANGAGKSTLIKTLADELAPHAGTRRASRGLAIGYFHQHQLDMLDLDSTPLAHLAR
LAPEVREQELRNYLGGFGFSGDTVLSKVGPMSGGEKARLALSLIVWQKPNLLLLDEPSNHLDVETREALATALAEFSGSM
LLVSHDRHLLRTTVDSFWIVADGGVREFDGDLEDYRDWLAARNAGERAAAREAAAGEPGVAVDRKAQRRLEAEQRQRLAT
LRKPLAAKLAKVEADMERARARLQELDAVIADADLYSDARRTERQQVMTEHGESGKRLNDLEEQWLEIQQALEEIEQDNA
A
>SEQF2266_AEE67090.1 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQNNNRQELQTLRDLIRYAVSRLNAARVALGHGSDNAWDEAVYLVLHGLHLPPDTLDPFLDARVLPSERSRVLDLIDRRV
TERLPAAYLTGEAWLRGHRFHVDRRVIVPRSPIAELLDEGLAPWVRDPLQVERALDMCTGSGCLAILAALAFPVAQVDAV
DVSSDALEVAARNVAEYGLQDRLTLRQGNLFEALPAAAYDVIVCNPPYVNQASMGALPQEYRHEPALALAGGADGMDLVR
RILAAAPGYLSADGVLVLEIGHERDHFEAAFPDLQPVWLDTAESSDQILLLTREQLNT
>SEQF2266_AEE67091.1 succinyl-diaminopimelate desuccinylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTASAVLDLVKDLIARPSVTPDDVDCQMLLAQRLERIGFQCETIARGGVTNLWARRGAGAPLTVFAGHTDVVPPGPRDKW
DSDPFVPTERDGFLYGRGAADMKSSIAAFVVAAEEFVAVHPEHPGSIALLITSDEEGPAVDGTVIVCDELRQRGEQLDYC
IVGEPTSTEALGDVCKNGRRGSLSGRLLVKGVQGHVAYPHLARNPVHQLAPALTELVAIEWDQGNEYFPPTTFQVSNLHA
GTGATNVVPGEAVALFNFRFSTASTPGQLKARVHEVLDRHGLEYQLDWELGGEPFLTPRGSLTDALVSAIQAETGLQAEL
STTGGTSDGRFIARICPQVIEFGPCNATIHKVNERIELSSLAPLKNIYRRTLENLLLAD
>SEQF2266_AEE67092.1 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLDLQTTIEQAWENRANLSPVDASAEVRDAVEHTIDGLDLGRLRVAEKIDDQWIVHQWIKKAVLLSFRLHDNAVMGQGP
LQFYDKVPTKFAGYGEAAFKAGGYRVVPPAVARRGAFIARNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLS
GGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVVVEENSVLAMGVFLSQSTKIYDRATGKVSYGRVPSGSVVVPGSLP
SEDGSHSLACAVIVKRVDAQTRAKTSINDLLRA
>SEQF2266_AEE67093.1 hypothetical protein BPTD_1744 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTLATALMLSLGPLSAGAQAAPNAEPNNLPYQGVYGQTDANAPTRAQVQAELAQAKANGQYTFGELEYPAAQTGSTAAP
SRDQVKAELAQAKASGQYTFGELDYPPRN
>SEQF2266_AEE67094.1 autotransporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPTSILARLPRYLGACALAALAALAVAPLAPAQAQTPLPAGLGAAEVRQYLSGLPSDALRQQASWLAPALLRPYLSGLT
DAQLRQYVQALTPGQITQGLAALTPAQRARLQREFERQARRQVQQAVRAEVAARSARAVAMGQSASMLLLDAEMGTLAQR
QGDLRRGHDEGAFWARGSANRFKVDTPDTPAFDLRVEYLTLGADHGWRLDTGRLYLGAYAGVSRARMDDNDIMHGRIESR
FLGTYLTYVDNGGFYVDAVSKLGRIDESVSFDLPLGLGDYDDDISHTTYTGSAEAGYHFKLPQRWFVEPQAQVIYSRSSQ
TSVQGRAGVRAGRDFTLAGGATLRPYVSASYLHEFSHDDSVDFGGKSYDAELPGSRWQLGAGAALDVGAHRAYADLRYGH
GANISQDLSLNIGYAYRF
>SEQF2266_AEE67095.1 hypothetical protein BPTD_1746 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVYEDFFWFMAALVALALVGGALFGRLGRLAHSVIAMLGLAIAVGVAVLLGARGEDVGPYAPLLAIAAFMFCLMIGGAAT
LVTRRVRRRHLTH
>SEQF2266_AEE67096.1 hypothetical protein BPTD_1747 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDISSHLLAELANGVCLETRVDGQTIGTYVVLGPADLDAIADIVPRQRVEEGADIHAAAVDSVDGAQMEIDQVIENMNPG
DVAVFFCADGDCYGAALDLLGLPVDE
>SEQF2266_AEE67097.1 cold shock-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
METGVVKWFNAEKGYGFITPEAGGKDLFAHFSEIQANGFKSLEENQRVSFVTAMGPKGPQATKIQIL
>SEQF2266_AEE67098.1 hypothetical protein BPTD_1749 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDSMAGPAALPDAATVLAFWREAGPARWYAKDEQFDRTFTMRFEAAHMAAARGELMAWSASAEGVLALLILLDQFPRNA
YRGTGHMFATDGLARQICEQAIAAGLDRQGPEDLRQFYYMPLEHAEDLAAQEQCVSLMAPLHAETLRWAEIHRDIIARFG
RFPHRNTVLGRATTAEEQQFLDQGGFSG
>SEQF2266_AEE67099.1 cold shock-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATGIVKWFNAEKGYGFIMPDDGSKDLFAHYSEICSEGYKSLQENQRVSFEVGQGPKGPRGQAPRT
>SEQF2266_AEE67100.1 hypothetical protein BPTD_1751 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHPIQEPRLGPLPALIFSSRWLQLPLYLGLIVAQGVYVLLFLKELWHLVTHTLSFGEQEIMLIVLGLIDVVMISNLLVMV
IVGGYETFVSRLRLEDHPDQPEWLSHVNASVLKVKLAMAIIGISSIHLLRTFIEASNLGSPNSRFTETGVMWQTIIHVVF
ILSAIGIAYVDRLTSQSVGHGAHPSH
>SEQF2266_AEE67101.1 trigger factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPVVETLSGLERRVDLAVSVAEVEKEVQAQLKRVGRTAKVAGFRPGKAPLAMLERSHGPGIRYDVINSLVGRAFEQAVD
GAKLRVAGSPTLTPKTEGVAEDTLAFTATFEVYPEVTVPDLSALAVTRYDTPVTDAEVNQTLDVLRKQRAKFEIREGRAS
QDGDRVVLDFAGTIDGVPFEGGKAEDFPFVLGQGRMLPEFEEAALGLKAGESKVFPLKFPDDYQGKEVAGKTAEFTITVK
EVAEGVLPEVDAEFAKSLGQAEGDVEKLKADIRTNIEREVKARLQGRTKGSVMDALVEAGKFDVPKALVDSDVEGRIAAA
REELKQRGVPNADSVPMPAEVFSTESERRVRLGLLVSELVKQAQLQAKPEQVRARIEEFAQNYEQPAQVVSYYLADRQRR
AEIEAIVLEDNVVAHVLENAKVADEKVPFDQLMGMA
>SEQF2266_AEE67102.1 ATP-dependent Clp protease proteolytic subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRFTDFYAAMHGGSSVTPTGLGYIPMVIEQSGRGERAYDIYSRLLRERLIFLVGPVNDNTANLVVAQLLFLESENPDKD
ISFYINSPGGSVYAGMAIYDTMQFIKPDVSTLCTGLAASMGAFLLAAGKKGKRFTLPNSRIMIHQPSGGAQGQASDIQIQ
AREILDLRERLNRILAENTGQPVERIAVDTERDNFMSAEDAVSYGLVDKVLTSRAQT
>SEQF2266_AEE67103.1 ATP-dependent protease ATP-binding subunit ClpX [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPEKKGSADAKVLHCSFCNKSQHEVRKLIAGPSVFICDECIDLCNDIIREEAQATARAAIRSELPTPAEIKTFLDQYVIG
QTSPKRMLAVAVYNHYKRIRHGEIKGDEVELSKSNIMLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVE
NIIQKLLQNCNYDVEKAQRAIIYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPNQDFVQVD
TTNILFIVGGAFDGLEKVIRDRTEKSGIGFSAAVRAKSERGVGELFSEAEPEDLIKFGLIPELVGRLPVVATLDELDEAV
LVQILTEPKNALVKQFQKLFAMEGAELDVRPDALKAISRKALKRKTGARGLRSILEGALLDTMYDLPSQGNVSRVVLEAN
AVEGVGKPLLIYADESEAASGEKAGRGEVRDAAA
>SEQF2266_AEE67104.1 ATP-dependent protease La [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASQTLSSDPIDLPLLPLRDVVVFPHMVIPLFVGRPRSIRALEVAMEAGKSIMLVAQKSAGKDDPTPEDVYEIGCVASI
LQMLKLPDGTVKVLVEGTQRARIDSIEDVDSHFTCQVTPIEPDTLQGSETEALRRAIVAQFEQYVKLNKKIPPEILTSLA
GIDDAGRLADTIAAHLPLKLEQKQKMLEVVVTAERLEGLLTQLETEIDILQVEKRIRGRVKKQMEKSQRDYYLNEQVKAI
QKELGEGEEGADIEELEKKIIAAHMPKEARKKADGELKKLKLMSPMSAEATVVRNYIDTLINLPWKRKSKINNSIGNAER
VLDDDHYGLEKVKERILEYLAVQQRVDKVKAPILCLVGPPGVGKTSLGQSIAKATNRKFVRMALGGVRDEAEIRGHRRTY
IGSMPGKILQNMSKVGVRNPLFLLDEIDKLGMDFCGDPSSALLEVLDPEQNHTFQDHYIEVDFDLSDVMFVATSNTLNIP
PALLDRMEVIRLSGYTEEEKIHIARDHLLPKLMKNNGVKDNELTVDDSALRDIVRYYTREAGVRALEREVGKICRKVVKQ
LLIKSDEAKAAGNKTAEAQTVLVNGDNLNDFLGVRRYTFGMAEKENQIGQVTGLAWTEVGGDLLTIEVADMPGKGNIQRT
GSLGDVMKESVEAARTVVRSRARRLGFADSVFEKHDMHVHVPEGATPKDGPSAGIAITTAMVSALSRIPVRADVAMTGEI
TLRGEVLPIGGLKEKLLAAHRGGIKTVLIPEENVKDLAEIPDNVKNFLEIVPVRWIDKVLELALERMPEPLSEEEAVKEA
IVAKPAEAGAADPVMKH
>SEQF2266_AEE67105.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDLRRVRQFVTLGETLNFRRAADRLHMTQPPLTVAIQKLEAELGTRLFERGGSGGVSLTPGGHAALAEARRLLFHNAQL
LAAARAASSGTGGALKVGFVGSTTNGVLQRIVRLFRVEYPGVELVLKEGTSVRIAERVDSGDLDVGLVRTPLLTPSRSHL
APLLAEDFVAALPLGNPLAQKADIRMEELATESFVFYSREDAAGLHATAMLACQRAGFLPRVTQEATQVQTVLSLVESGL
GVALVPAVMQYNPSPRVAYRAIADVSPAAEIGLALLLPEPSSAAAQRFREVALHCFGDD
>SEQF2266_AEE67106.1 hypothetical protein BPTD_1757 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTALGHIKVLDLTRILAGPWATQTLADMGAEVVKVERPRVGDDTRAWGPPFLKDSEGNETADSSYFLAANRGKKSITVD
LAHPDGQALIRDLAATADVVVENYKVGTLARYGLDYESLKAINPRLVYCSITGFGQDGPYASLPDYDFVFQGMGGLMSIT
GQPEGTPGDEPMKVGIAISDLLTGMYATTAILAALERRHVSGTGQHVDMSLLDCVVSISSYQAINHFLSGKIPRRMGNAH
SNMVPYQVFRCKEGDVIVAVGNDGQYRALCKLIERDDLATDERYATPGQRNRNRDTLIPEIAQAMLARTMQEWVALMEAA
NVPCGPIYNMQQMFEDPHVQHRGMRLSLPHSAGVQAPAVASPIRLSDTPIQYGRSAPLLGEHTDSVLAQRLGLAPARIAE
LRARGAI
>SEQF2266_AEE67107.1 hypothetical protein BPTD_1758 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRHTFIRAALAAALAVCAAGAHAQAKPSSIRLVVPYPAGGAADQIARLVANDAGAILGTPIVIENKGGAGGMIAAESVL
QAAPDGATFFVGSNAPIVINQAIYEKMSYDPAKDFVPVAGMGKAPLLLVTRKDLGTADVKALAELGKREAGKLTMGSASS
GNITHLAGEYAASQMGFKVTHVPFKGSAPAITSLMGGNIDIMFDALPSCMAQAESGRIVPLAILDDQRFPQLRDVPTAKE
LGYSGLEAAAWFGVMACAGTPDSSIGAMNKAINQALQKQELIDKLRRIGAQPMPGSQQDFARFIDAERKQWVPLAKSLGV
RAD
>SEQF2266_AEE67108.1 hypothetical protein BPTD_1759 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGQPIVVDQSAIDTFGDVVHDRQWIHVDPVRAAAESPFGTTIAHGLLTLSLITGWYHQLFEFPGRKLALNYGFDKVRFPA
PVPSGSALVGSFRLARVDELGPDEARCLWEVDVRVAGAERPAMVAEWLMQLRY
>SEQF2266_AEE67109.1 enoyl-CoA hydratase/isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVLEISRVGACAVLTLNRPAARNALDMDLRNALAKALPEIRDDATVRAVVLTGAGGHFCAGGDIRAIAAGQGNADVFEG
RNRILSMQRWFDGLVDLEKPVIAAVDGVAFGAGLSLALAADFVLASPRATFCAVFARLGYVPDLGGMYLLPRAVGLARAK
ALAFSARVVGAPEALEMGIAHQLVDDRPVLDAALELAGRFEQAPAGALGIVKSVMNHAFESDRRTVYMQEALAQALCRES
AFHQEAARRFLDKQAPLYQWPQEQQ
>SEQF2266_AEE67110.1 hypothetical protein BPTD_1761 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEHPQAASALLPQQEYFAHLADGRFMIQRSRSSGEYVFYPRVAAPRTGAQDLEWVAASGRGTVYATTVMRVRPPAAPYN
VCLVELEEGPRMMSRVEGIGPEDVQVGMAVRARIIRDDAGEPLVVFEPAGPSDAGIGQGRAAQ
>SEQF2266_AEE67111.1 thiolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIQERFPRGKTAIVACATYGIGESPGLSSLDLAVRASVQALDSVGLTPADVDGLFIGLPDDFVSGLSFTEYLGISPRLTD
NNRTGGSSFLTHAIHAALALEAGLCDVALIAYGSNQRSGAGKLVSSMRPSPYEGAYKLARPVGAYALAASRYAAQYGLQK
EQLGAVALAARQWAQKNPEAYMRAPLTMDECLASRLVCDPFSVRDCCLVTDGAAAVVMVRADRARDLAARPAYLLGGAAA
AWHKDITNMPDLTVTAASLSGPRAMAQAGVTPADIDVLELYDAFTLNTILFLEDLGFCAKGEGGAFVEDGRIAPGGALPV
NTNGGGLSCVHPGMYGLFTMVEAAQQLAGAAGERQVAQARLALAHGNGGELSSQATLILGTEETI
>SEQF2266_AEE67112.1 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQDKLLTLENRQVIVTGAGQGIGRALASAIAGLGGRVVAVDLNADALAALREALGHERCVTVAGNVADPSLAQQAVDAGV
TAFGGVNGLVNNAGVTRTAMIDKMSISDWQQVIDVHLSGSFYFLQALGRHLLGRAKAGGDGAGAIVNISSDAGRRGTIGQ
INYGAAKAGVLGLTMCAAREWARYGIRTNTVGFGVVETPMTETIRGEKFRDTYLSQIPLGRWGEADEVVRPVCFLLSDAD
SYVTGQHLSVNGGYTIGL
>SEQF2266_AEE67113.1 3-oxoadipate CoA-transferase subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNKTCESADEAVSVVESGATILISGFGDIGLPFELLHALARTSVKDLTIVSNNAGTGELGLSRLFRNRQVSRLIASFPS
QPDSHHYFAAYQEGLVDLELVPQGTLAERIRAAGAGLAGFFTPTGYGTELAQGKECRMFKGKGYVFEEALPGDFAFIKAH
VADAYGNFRYRRASRTFNPIMAMAARTTIAEAKQMVPVGSIDPDDVHTPGVFVDRIVEVRDE
>SEQF2266_AEE67114.1 3-oxoadipate CoA-transferase subunit B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKGWSNDEIAARIAVDLPEHAIVNLGIGLPILVANHIPEGKTIFFHSENGIIGLGPVPAPGQEDPDIVNAAKKHATLIA
GASIVHHADSFSLIRGGRLDYSVLGGLQVSSGGDIANWKVPGQKGGGGVGGAMDLAVGARNVLVMMRHQDKTGASKLVKS
CTFPLTAVSAVTRVYTELGIFECAGDAFIVRESAPGIGKDELLRKTEAALTFP
>SEQF2266_AEE67115.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67116.1 LexA repressor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATKLTERQQEILDLIRQTVARTGFPPTRAEIAQALGFRSPNAAEDHLKALARKGAIELTAGASRGIRLKVPDSATPSAQ
LTHPLLAQLVLPLVGRVAAGSPILASEHVEREVGVDPGLFAQTPDYLLKVRGMSMRDAGILEGDLLAVKRAAEARNGQIV
VARLGDEVTVKRLQRQNGRIELLPENPDFAPIVVANTDEFALEGIAVGLIRTQPLH
>SEQF2266_AEE67117.1 aromatic amino acid aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTLFASVELAPRDPILGLNEQYNADTRPGKVNLGVGVYYDDEGRIPLLQAVRKAEVARIEAAAARGYLPIEGIAGYNKG
AQALLLGADSPLAAEGRVLTAQALGGTGALKIGADFLRQLLPQSKVLISDPSWENHRALFERAGFPVETYAYYDAATHGL
NFEAMLAALQAAPEQTIVVLHACCHNPTGVDPTPQQWEQIAAVVKARNLVPFLDIAYQGFGEGLEQDAAVVRMFAALDLT
MFISSSFSKSFSLYGERVGALTVVAGSKDEAARVLSQLKRVIRTNYSNPPTHGGTVVSTVLNTPELFALWENELAGMRDR
IRLMRKELVEKIKTQGVAQDFSFVLAQRGMFSYSGLTAAQVDRLREEHGIYAVSSGRICVAALNSRNIDAVAAGIAAVLK
>SEQF2266_AEE67118.1 excinuclease ABC subunit B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPGFVEFPDSPFHLYQPYPPAGDQPGAIDALTEGVSDGLMFQTLLGVTGSGKTYTMANMIARLGRPALVLAPNKTLAA
QLYAEMREFFPRNAVEYFVSYYDYYQPEAYVPTRDLFIEKDSSINEHIEQMRLSATKSLLERRDTVIVGTVSCIYGIGNP
GDYHAMVLILRTGDRISRREVLARLVAMQYTRNDADFTRGVFRVRCETIDIFPAESPELALRLTLFDDEIESLELFDPLT
GRVRQKLPRFTVYPGSHYVTPRETVLRAIETIKEELRERLAQLIADGKLVEAQRLEQRTRFDLEMLQELGFCKGIENYSR
HLSGAAPGEPPPTLIDYLPADALMFIDESHVTIGQLGGMYRGDRSRKETLVQYGFRLPSALDNRPLRLEEFEARMRQCVF
VSATPAAYEQEHADNVVEQVVRPTGLVDPIVEVRPAHTQVDDLLGEIHKRAALQERVLVTTLTKRMAEDLTDFLSEHGVR
VRYLHSDIDTVERVEIIRDLRLGVFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNLNGRAIL
YADRITDSMRRAIDETERRRAKQIQHNTDHGITARGVSKAVRELIDGVVAPAGHDALESAVPAEVLTDEKAMAREIRRLE
KLMMDHARNLEFEQAAAARDALNALKSRLLLDGVGWSG
>SEQF2266_AEE67119.1 low molecular weight protein-tyrosine-phosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMTKVLFVCMGNICRSPSAEGVFRYLVNDAGMGDVVRVDSAGTHAFHIGEAPDARAQAAARKRGYDLTHCAARQVTADDF
REFDLILAMDWDNLAALQQQCPKAYQHKLMLLMRFANEFEEATVPDPYYGGPEGFGKVLDYLEDACQGVLELVRKRATQY
QAA
>SEQF2266_AEE67120.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLTTKGRFAVTAMIDLAMRQHSGPVTLAAISQRQNISLSYLEQLFGKLRRHELVDSVRGPGGGYSLARLARNVTVADII
FAVDEPLDATSCGGKRDCTSGNDGKPGKCMTHELWTTLNRKMVDYLDSVSLQDLVDQQRVRQLQEAANQAQGCSAVRVNR
STPVAANATA
>SEQF2266_AEE67121.1 cysteine desulfurase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNRPIYLDYSATTPVDPSVVEKMIPWLYESFGNPASRSHAFGWEAEDAVEKAREEVAKLVNADPREIVWTSGATESDNL
AIKGAANFYAERGKHIITVKTEHKAVLDTCRELERQGFEVTYLDVQDDGLLSLDAFKAALRPDTILVSVMMVNNEIGVIQ
DIAALGEICREKGIIFHVDAAQATGKVEIDLQKLKVDLMSFSAHKTYGPKGIGALYVRRKPRVRIEAQMHGGGHERGFRS
GTLATHQIVGMGEAFRLAREEMGTENERVRMLRDRLLAGLTQIEEVYVNGSMEHRVPHNLNISFNYVEGESLIMAIKELA
VSSGSACTSASLEPSYVLRALGRNDELAHSSIRFTLGRFTTEQEIDFTIELIKSRVGKLRDMSPLWEMAQEGIDLNSVQW
AAH
>SEQF2266_AEE67122.1 scaffold protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAYSSKVLDHYENPRNVGSFDKGDDSVGTGMVGAPACGDVMKLQIKVNEAGVIEDARFKTYGCGSAIASSSLVTEWVKGK
TLDEAMNIRNTQIAEELALPPVKIHCSILAEDAIKAAVQDYKTKHGAETPEAVAAN
>SEQF2266_AEE67123.1 [Fe-S] cluster formation/repair protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVTLTQSAANHVGRYLQKRGKGIGLRLGVRTTGCSGMAYKLEYVDEQAADDVVFDSFGVKVFIDPKSLAYLDGTELDYA
REGLNEGFRFSNPNEKATCGCGESFTV
>SEQF2266_AEE67124.1 co-chaperone HscB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAADDHFSLFGLPTRFALDPVQLEQAWRAVAARVHPDRYATASAAERRVAMQWAARANEAYRQLRDPMLRARYLCEQAGV
DLQTESNTAMDPAFLMQQMEWREMLDDARRDPAAFAALRAELEQARLRMQQTLSELIDERGDYQQAGTKVREWMFVEKLA
QELSAAQPMQ
>SEQF2266_AEE67125.1 chaperone protein HscA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALLQISEPGDSPAPHQRKLAVGIDLGTTNSLVAAVRSSVPEVLADAQGQVLLPSAVRYLDGGAVRIGREALLEQARDPL
NTIVSVKRFMGRSAADAAASGAPYEFVDAPGMVRLRTVQGDLSPVEVSAQILAVLRQRAEDVLGDDLVGAVITVPAYFDD
AQRQATRDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGIYAVYDLGGGTFDISILRLTQGVFEVIATGGDTALGGDDFD
SAIVAHACAGEDVAALPVADRRALLVAARAAREALTDQAQAPFEVTLRDGRAIQATLTRAQFEQLAEPLVGRTLDSARRA
LRDAGLAVGDVRGVVMVGGATRMPVVRQQVGALFGTEPLTNLDPDQVVALGAALQANLLAGNRALGEDWLLLDVIPLSLG
LETMGGLVERIIPRNSTIPVARAQEFTTFKDGQTAMSVHVVQGERDLVSDCRSLARFELRGIPPMVAGAARIRVTFQVDA
DGLLSVTAREQSTGVEAAVAVKPSYGLSDDEIARMLADSVTQADSDARARMLREQQVEARQLVESVGAALAADGDLLDPA
ERATVDQRLQAAAQAQSLDDVEAVRAAVQALSDATEEFAARRMDRSIRSALAGRKLDELA
>SEQF2266_AEE67126.1 ferredoxin, 2Fe-2S [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPKLTVLPHPDVCPEGAVIEDAPKGVSICRVMLDNHIEIEHACELSCACTTCHVVVRQGFNSLEDATDDEEDLLDKAWGL
TSTSRLSCQALIGEEDLTVEIPKYTINHAKEQH
>SEQF2266_AEE67127.1 hypothetical protein BPTD_1782 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKWTDIYEIAAALADTHPDADPQTVRFTQLREWVLGLPGFADDPAHCGEKILEAIQMAWIEEMD
>SEQF2266_AEE67128.1 hypothetical protein BPTD_1783 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTASLRFGLAANRLHHETPDAALFTWLRACSATIREMGIQLHTVGRTHDAIVREGMLQGYSGLVRYPYGREGGLMKLVA
RVTEGRDGDAPFDGAIYLIDPVDPSSIFPEALALKRQCITHGRPFISTLAGAIEWIEVERVLAGLAPDATAARLFDFTGQ
TLALISHDALKEDMVAFAAEHFDLLSQFARRVATGTTGGLLNDLAWSRGWPKDRPWVHRYLSGPLGGDAQIAELVLEHQC
QRVIFFEDPHVARQHEADIQLLERAVRVVTASATCATSPSVARRWAQAVQRRQAGRA
>SEQF2266_AEE67129.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67130.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAADQPPRYGTLTLQTDGALAILTLDRPAALNAIDIAMARDLQAAARWLQDRAALRVVLLRGAGKAFCAGGDIALFQGP
PEEIRASLRALFTPLNDCVARIAAMDQLWLADVHGVAAGAGLSLALACDLAIAADDARLVTAYLKLGATPDAGMTHALAH
LLGRRRALALLLRAEPIDAAQALQWGLVDRVAPAAERADQALAYARELAAHAPHDVAAAKRLLRQAPATSLEQQLEDEAA
AFLAAAGRADFAEGVQAFLAKRPPRFTGA
>SEQF2266_AEE67131.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67132.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67133.1 hypothetical protein BPTD_1789 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGGPYIGIVADDLTGSGDTAVQFVRAGWATQLSVGGAEQALADPAVRQAEVLAVTTHSRPLAAADAAAVVRGEVERLRAA
GVQRLYKKVDSTLRGAFKAEIDAARLAWGEGAIAVVCPAFPVTGRTVRQGVLYVSDRPVTETSAATDPVTPVTESHIPTL
LGCAQLAAQAGETPAELARRIAAAAPVVVVDALDDADVQRLARAIGVLGQRAVPVGSGGLAAPLAWVWAGGQAAGPVLVV
VTSQHSAARQQAAALQQAGARTWAPTLAQLADDRNWAAWTAEVEAAEHGMPAVDALMLLAPEGRLAGLDADSVARRLGEL
AARLVLAHGAAGVVATGGDGASAVLAALQASGIALVDEVTGGVPLGTLTGGQAAGLPVVTKAGGFGEQDVLIRAAQAIRE
RRFTK
>SEQF2266_AEE67134.1 putative pyridoxal phosphate biosynthetic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQDATPSRIPTLAVTLGDVAGIGPEITAKMLLGHDELRQRARLLVVGDAAVLAQAVQAVGGDPARVRVIATPAEATNQP
GSIEVIQAGPSLAHVPPGQLSAEAGDGSVRYVTTACALARDGLIDGIVTAPLNKAAMHMAGHKWPGHTELLAHEFGVKTF
SLVLSAGDLYIFHATTHVSLRQAIEDVNPQRMRAVLRLAGSFARALGRADHPVAVAGLNPHAGENGIFGTEDAEILAPAV
TQANNAEGILAAGPIPADALFPQAVRGKWKFVIACYHDQGYAPFKSVYGDDGVNITVACRWCACRSTTAPRSTSPARASR
EDSLVLAAERAAQLAPGWHQVWETARSTTGG
>SEQF2266_AEE67135.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALSAIEPFALDRSGATPLHAQVADAIRNHIRDHRLTAGTVLPSEAALCHSFGVARSVVRQALGALVAEGLIRRDPGRAP
VVAPPREHRRMVQRSAGLYEQFAGLGVALRTRVLACRPAEPPPEVAAFFGTTETLLLERLRSVDAQPLAYVRTWLPRAAI
AGLAADHLQDASLHRVLAQRFGLRPGRGRNRIRAVAAEAALAQALDVAPGSPLLMLEGQGLDQDGHPLEWFTTWHRPENL
VFDVDVGQERESVQPALTCGTAAVAPPAVAAPPSGALDAVEQSLLQALQAVRRAREDQQE
>SEQF2266_AEE67136.1 hypothetical protein BPTD_1792 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTRIRSLHIYPVKSCAGIDLAESIVDRAGLAHDRRWMVTTAAGQFMTQRQYPQMARIRTALEDGMLVLRAPGMEDLRIP
ADGSELAERTQPVGVWRDTVIARAEHPRSAEWLSRFLGLPCRLLKIDLRADRTANPEWVDTWLERHPEWAEDFAGDHFFG
FADGFPLLVANQSSLDELNERLAARGQAPVPMNRFRANIVVEGDWPAFEEDQTACIVAGGVRMAFVKPCTRCPMSNVDQV
TAEVYDELGLTLTTFRSLEIGVVFGQNAIVDRTAPAPLRVGDAVEIELDF
>SEQF2266_AEE67137.1 aspartate alpha-decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRIMLRAKLHRVTVTEADLHYEGSCGIDEDLLDAAGMREFERIELYNVTNGERFDTYIIKAARGSGAISLNGAAARRAQ
VGDLLIICTYGPMSEEQSAAHKPQVVLVDDANRVKEIRKFPA
>SEQF2266_AEE67138.1 CDP-6-deoxy-delta-3,4-glucoseen reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFQVTIEPSKHQFQAEAGQTVLDAALAAGIVLPYSCRTGACSTCKGKVVAGEVDAGPYPAQILSPEDLAQGYTLFCQAK
PQSDLVVESTEVRLASDIQIRKLPSRVQTIERVAPDVAVLKLQLPASEQFRYYAGQYIEVILKDGKRRSYSMAGAPHTGS
PLELHIRHMPGGLFTDHVFGAGDTQMKEREILRLEGPFGSFFLREDSDKPIVLLASGTGFAPVKAIVEHMIHNQIQRPVV
LYWGGRRPRDLYHDALAQSWAGRLPGFRYVPVVSDALDEDGWSGRTGYVHEAVMQDLPDLSGYEVYACGTPLMVDAARRE
FSAQCGLPAEAFYADAFTSEADLAKATP
>SEQF2266_AEE67139.1 D-amino acid dehydrogenase small subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKVAVLGSGIIGVSSAWWLSQAGHDVVVVDRCTGAAQETSLANGAQISVSYAEPWANPQAPFKLLKWMFQDDAPLLFRPQ
LDWRQWQWGLAFLRECLPSRLAPNIRAMVRMAEYSRATLQGMRAELGIQYDHLERGILNFYRDQREFETSQRAAGLMRDF
GVERRVINADEVVAIEPALAPHLQTIVGGDYTPEDESGDVHLFTAALARRCEAAGVEFRFSTRVTRLLGEGGRVQGVELI
EPDGRYGRLDADAFVVAMGSFSAQLVRPLGVPCMVYPAKGYSATFPVRPGALAPVVSLTDSSHKVVFSRLGERLRMAGTA
ELSGYSRGLNTGRCEAMTRLARELFPDALDFERVSYWSGLRPSTPSNVPLIGRTSVSNLYLNTGHGTLGWTMGVGSGRAL
ADLLSGRRPEPEFPFLGL
>SEQF2266_AEE67140.1 glycerol-3-phosphate-binding periplasmic protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGFARAMRASRRACVLGLAMAAMGVAQAADSVEIQVWHTLSGPNKAEFEKLAKQFNKEQGDVVVKLRDFGNQDDLKKEA
VSAVKSKKGPNLVQLADNHSPEVVAEHKSILPLHQLLAKYPVKDLNWFLPSTTSFTRDGKGRLLAFPWMAEVPVMFYNTA
YYKKAGLDPNKPARTWADLQAELLKLRDVANIDCPYATSDQVTVHLENLAPVNNQLYATLNNGLDVAKKGSPSMQFDTLY
MRHVSLMVSWKRSLLLTAYSDDNKSDQLFAKGECAVLTTSSSALGQFLNTRSLSFGVAPLPYYDQVTKTGGRPFVSGSAL
WAMEGHPQAEEKATAKFLAWLSKPVIAAEWHQRTGYLPLTEAAFRASDVSFYNKVPGAQQLVELMRNPPAATSRGFRIAN
YERIEPVLNTQLTAAFDGKTPPVAALNNAASQARSLAAQR
>SEQF2266_AEE67141.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPQADLSTRQLRAFVMLADLRHFTKAAQACHLSQPAFSALIQSLEATLAMQLFDRSTRRVVLTQEGELFEPLARRLLAD
LGHAMTHIASFVELRRGRVHVAALPSLAAGWLPKVLHEFHAEHPDIELMLSDVLSDECIELVRSGQADFALASRGIRASD
PAVLHARELCSDTFHLICRKDHPLAREPRLTLKHLAPWPFIHLTRNSSVRQTVEAALRPQVAKTILEVAQLATVAGMIEA
GLGISVVPTFTLYQFERPGLLIRPISLPGLTRQIYIVRRQEERLSIAAQALYDLVVAKLGTPAASPARPRRRRTEKRD
>SEQF2266_AEE67142.1 hypothetical protein BPTD_1799 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVPLFRVAHARTGDKGDRSNISVIARDRALYPLLVEQLTPEVVLAQFAHRRPAGAQRYLLPKLGAMNFVLDAVLDGGVN
GALNLDAHGKALSYLILKTEIAVPSDLVCRLAGSPG
>SEQF2266_AEE67143.1 extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRYLKSTYAAVLLAIGTAVPHATTLAQEVKVAAEAPLRLLDPVGTTAYITRNHAYMVYDTLFALDAQLKPQPQMVSTWSV
SPDKLVYRFTLRDGLKFHDGSPVTAADCVASIKRWAQRDLTGLRMMAAAKEITAKDDKTFEIVLEQPFGAVIEGLSKASS
LPAFIMPKRIADAPASQAITEVIGSGPFRFVASEYRPGLQVVYERNTDYVPRSEPPSGLAGGKVVNVDRVVWLSLPDIQT
EANALAKGEVDYVQTVYPDVVQTLEASKDVVIQKLASTTTPTLRLNWLQPPFNNQKVRQALLHAVSQRDYMDAQVGDPKA
YRVCWAMFGCDSPLASTAGVVSQDDEADLNAAKALLKESGYKNEKAVVLHATDYPPTSAISPFTAQILRSIGMKAEVQSM
DWATFLTRRGKQDPVEKGGWSVAYGSWNTLDLMSPIANLNLDGRGKEGYAGWTESAEMESLRTQYAQATEPASRQQIAAK
IQQLAYDQVFYIPLGTYSNYAARRSNVTPLLDAPVTVFWGISKN
>SEQF2266_AEE67144.1 inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQILRLLFLRLASAIPVVLVVVTVVFLLVRLTGDPATILAGDMASPEVVASVRADLGLDRPLLGQYAQWLWDLLQGNLGT
SIVTKQPVATLIGERLESTLVLSLSALVVTVLLAVPLGVLAAWRHNTLVDRVVMIYAVIGFSLPSFVVGYLLILMFSVWL
GWLPVQGYVSITDDIWLAAQHLVLPTLALAIFYMSLISRVTRASVLEVLNEDFVRTAKAKGVPPLRILSQHVLRNAAIPI
VTVIGIGLAFLISGVVITESVFNLPGLGRLTIDAVLSRDYPVVQGVILFFACVYILVNLLIDMLYVVIDPRIRY
>SEQF2266_AEE67145.1 inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSILRHNRLALLGGGVLLLMVAISVAASWIASTDPAMMQPRMRLTPPGEAFLLGTDALGRDVYSRVVHGSRMSLAIGAL
VVLITIAIGTLIGLVAGASRIMDRVLMRIMDGVMAIPGILLAVALVSLFGASLASVVIAIAVPEIPRVVRLVRSVVLSVR
EEPYVEAAVGLGVPYPKVVWRHILPNCFVPLIVQASYVFAAAILLEAVLGFLGVGFPPEIPTFGNILAEARPVFQRAPWA
TVAPGLLLAVTVLAVNLLGDGLRDSLDPKLARRAND
>SEQF2266_AEE67146.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTENTPKQRVLEVSGLAIRAGARTLVQDVTLSLAQGEILCLVGESGSGKSLTASAVMGLLPGNLGVGAGSIRLDGEDLTA
ASPARMQALRGDRMAMVFQEPMTSLNPLMRVGRQIAEVLQVHRPDLGAGQVRARVLELMGDVHLPTPEALMDAFPHQLSG
GQRQRIMIAMALALEPALIIADEPTTALDVTTQVQVLKLFRQLLAKHSSAVLFITHDFDVVRDIADHVAVMQLGRIVEQG
PAGQVLDAPRHDYTRKLLAAVPSGVPKTQQNASSDELLSVSGLNLVYESRGLLGPARRTHAVADVGFTLKKGETLGVVGE
SGSGKSTLGRCITRAHAPTSGRIVFDGVDIAGLSGKALRAVRRRVQMVFQDPYRSLNPRRRILHALIEGPIESGVDRKTA
CARAAELMALVGLPADGLQRYPHQFSGGQRQRICIARALAMEPDLIVADEAVSALDVSVQAQVLELFEDLQKRLGFAMIF
ITHDLRVAAQVCDRIGVMQKGRLLELGPVRQVIHAPQHPYTRHLFDSLPGRVGQTAEPAMELQA
>SEQF2266_AEE67147.1 putative amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSTDQHIARAGVAELARGIARGAFTPTEVTDVFLRRIQDLNPAIGAFVAVYEDEARHAARQATQALAQGQRLSPLHGIP
FAVKDIVDVAGKFTTYGSRTGAGRQAGATAEYVRALLDAGMILLGKTHTVEFAFGGWGTNQRMGTPRNPLRADVPCATGG
SSSGSGAAVGAQMVPFAVGTDTGGSIRIPSAFCGLTGMRPSMGRHSGAGVMSLSHTLDTIGPLARTVEDVQMLDDLLTGK
TATDTAQPGSQAVARVRDARIGVLGAQWLGAIEPEVAHAYAQSLRAFEAMGAMLVELALPFDREAFAQLTSTLIACEGLQ
FAGKYAHDPLSGMDEDVRARFLVGDQYDAEAYAGLLGRRSAMIDTFTQAMAGVKALLMPTTPCVAQPLAGLEQSPYNPAV
YTRLPAWLGCCALAVPNGTGAHGLPTSLQIVGLPESDRLVMSLGRAYQEYA
>SEQF2266_AEE67148.1 lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKARRLAMAGLSLALGGCSLSQQMQAMRDAATSLRARLLEGQQAVGRAGERPAREAAQDVARPWLAGRAQPLAREVLLPP
ALRADVDTTLLFAGKATLPVLAERLHRATGIAVRVHPDALLPRAAFLPRLAGQAELAAEPPAQAELRAGPRPLADTLDAL
AAQLYVHWRYHRGAIEFYRTETRVFDVRTLALAASAQARLGRAGSGETGSFDHASSTVLSADAGKALQAVRDRVAAFLTR
AGVIAEIEAGGSTLAVTDTPEALARIEKYLQGENRALTRRVRLVFEELTVRTTAAAEGGIDWQAVYASARAAASYAMPGG
AGAAGALGARVLAGPWRDARALIAALSTMGAVLRHRSIPMLTLNRRAVTHAVRTTFSYVDQVQRLSPTAAAPGGRDAVPG
LAVQQKRETVGTFLTLLPEARDDGRILLSISYDNTIAQPLRTLTFGEGGQQVSLQQIAIDGSGIVQQVELLPGQPVILSG
FDHSEDQYERHRLFPDAPLAAGGHDRTARERVTTVVMVTAQIDEG
>SEQF2266_AEE67149.1 hypothetical protein BPTD_1807 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAATHPPLVLQQTQGGPMLAFGLTWFAVLGSHAALQGRARARALRATHYVVGGRHAVAAGCARLPRRYGAMAIHSAAQA
YASLHPDGAQAGVASLPDGQGWLIAVQDGAVLASADRLFADAAQAQACLRTLLAQRPDLREVPAQAALDTLLARPDPSAR
LAPLASRWSRAPVAARAVVLALAVAGGASLWRGLGQAPPPAAPDPRAVWRAAQAEFLRGWPVHTSSELARVLDTLQALPL
QVAGWALRQAQCVPGPAWHCDADYHRVDAAATSLAFAAAVPPGWRMRLHTLEHTRVAWTLAGDQHGLDRTAPASPADTLA
LAATLQRASAAFTHVSVGAAQALAGPAWDGPPELAPPAAPELHRREVVLDGPLRSLALVWPLPAPIGWTAVSLRVVPDAI
ATLRASVLSLHLQGSLYEQTTSRS
>SEQF2266_AEE67150.1 hypothetical protein BPTD_1808 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRELLRRETLAAAQPPRPAAPAPWSDAPAARKAAPGPRADRIVLLAIYGVGAALRAEVSINRRHWRYLAGQRRPFGQAPE
ARYQLEAIAAPCVHLRSGAVRRTACLAPAASLDNGAASAAGAAP
>SEQF2266_AEE67151.1 putative general secretion pathway protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAEHAALASAWRAAGALGQRLDAWRFGAERGDYYEYLADMLEGLQGRQTLRDIFETDAARHGEASVRGRLARRWLHRYQD
CGGDLRATWARCLPEGDCTLLALAQAAGGGALGIVLRDLAHLTRLTQGMRREFCVTIAAGLVAMTVACALLAAVPAFSAP
RLRLVFQAVPPDYHGAWSAGLFALARYVEAAWSAAVAALTAAVALVCWSLPRYAGRARVFLDRWQPWRLYRDMQAIRFLA
LATVLLRQRGNIDTRLRTALLVQGADAPPWLAWHLERMLLRVDAGVVDASVFDTGLFEPAHAWFMADMVAAHGLADGLAR
ARTRVEAHMLPRLRRQAQGLRWALLLGAVGAVLALALWHYAAIDDLRHALVSFYASQ
>SEQF2266_AEE67152.1 putative fimbrial protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHTILSGRQAGFSLVEVSIVTAIVLLVAIIGIPAIGSYVIESKVPRVGEELQRFVARTKANAQGDGAAPYTGIGTASLA
HALRDSSVVSVRGEGASATVAHGLGGQGAGAHGVISVAPAAPGGAPPGSAFTLTLTNVNGAACPALASVMQRVSDIIAVQ
GKAGPVVVKNALAVPALPYRAQAAQAQCVAGDRNTFVFTAR
>SEQF2266_AEE67153.1 hypothetical protein BPTD_1812 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSAHAQGGLALLELAVAAALAAMAAVWAANRLVQDAQDAAARGAGVWLGEIQRGLDQLLQRHFDTLADGLAPRDERGRA
LFRDAWRPTLPELQAAGLLARSLPRHSPLGTGVIMLVRRDPHCPRAGCRLDALAWLDRPLLDGHGQVDLMRMAPLVAATA
GRGGFAVAGGVRGAAFRFANPPWPGVARLPAGTPLAWAGLAAGKASPAFGGAYSVNSHVGCRSYSGHTSRNPLTGQCSCP
PGYASVIMAQAIDRVDGAPGFTSFVCVRPGKE
>SEQF2266_AEE67154.1 alanyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSSEIRQKFLQFFQSKGHTIVPSSSLVPANDPTLLFTNSGMVQFKDVFTGKEARAYKRATSSQRSVRAGGKHNDLENVG
YTARHHTFFEMLGNFSFGDYFKREAIQYAWELLTQVYKLPAEKLWVTVYQEDDEAYDIWAKEVGVPAERIIRIGDNKGAR
YASDNFWQMADTGPCGPCSEIFYDHGPEIWGGPPGSPEEDGDRYIEIWNLVFMQFERDAAGNMERLPKPCVDTGMGLERI
AAVLQHVHSNYEIDLFQKLIAAAARETGVKDLADNSLKVIADHIRACAFLIVDGIIPSNEGRGYVLRRIVRRALRHGYKL
GQTKSFFHRLVPDLVAEMGEAYPELAQVAERVAQVLRQEEERFGETLEHGMKILDGALAKVAKGDPLDGTTLFTLYDTYG
FPVDLTADICREREVEVDMAGFEAAMQRQREQARAAGKFKMAEGLSYEGAETRFEGYENLELSGVKVTALYVEGTQVEQV
SAGQDAVVVLDATPFYAESGGQVGDTGLLEAGGVRFAVADTLKIQPGVFGHHGTLEAGALKVGDTLLARVDAVRRARTVR
NHSATHLMHKALREVLGAHVQQRGSLVDPDKTRFDFAHDAPMTAEQIARVEAIVNAEVLANQATEAKVMAYDDAVKGGAM
ALFGEKYGDTVRVLDIGFSRELCGGTHVRRTGDIGLFKVVSEGGVAAGVRRIEAITGDNALAWVQDQNALLQRAAGVLRA
PAHELPERIAQVQEQLKALEKELEQARTKLAASAGNDLVATATVEVKGIKVLAASIGDVDPKALRGMVDNLKDRLKPAVV
LLAAGSADGKISLVGGVTADLTGRIKAGDLVGFVAGQVGGKGGGRPDMAMGGGTDLAALPAAVASVQKWVDERL
>SEQF2266_AEE67155.1 hypothetical protein BPTD_1814 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASDTGGLPSYQHEVDASGLTCPLPILRAKKALAQMESGQVLRVVTTDPNAIRDFQAFARQTGNTLLAQREAEGRGEHF
LQRR
>SEQF2266_AEE67156.1 hypothetical protein BPTD_1815 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKHCSILAPLTRLAACGALAAVLAVPLPAAARVGDAALVSVTGQITAVDPATRTVTVRGPQGNEVPLQAGPDVRNFDRIK
VGDTMRVDYYESVSIATRAKGSGVPEVRSETVATRAKEGALPQGAVGRSTTITAEIWHIAKDGRTVILQGPQGGRETFHL
RSAAAQEKLRTLKEGDLVDFTVTRALAAAVRSR
>SEQF2266_AEE67157.1 30S ribosomal protein S16 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVIRLARGGSKKRPFYNLVATDSRNRRDGRFVERVGFYNPVAAEGTENLRIALDRVQYWTGNGALLSPAVERLVKEYSA
KVSAAA
>SEQF2266_AEE67158.1 16S rRNA-processing protein RimM [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEAAHSGAAPADLVELGRIASAYGVKGWVKVQPHSAQAEVLRTVSHWWLTRPAPQAARDVVASVPRAYQVLQARVHGGA
VVAQLAGIDDRDQAEALRGCFVQAARSAFPAPADDEYYWVDLIGCALYSDADGEPRLLGVVDEVFDNGAHAVLKVLRQQI
QPGQPGPVPLLDPKGRPLEELVPFVRAHIRHVDLAARRIDSDWPLDY
>SEQF2266_AEE67159.1 tRNA (guanine-N(1)-)-methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFDVVTLFPDMFGLVRDQGVTGRAHAQGLWALHAWNPRDFTHDVHRTVDDRPYGGGPGMVMMAAPLEAAVAAAQAARAA
QGLQAAPVILLSPAGRRYDQAEATTLAAGTGAIFICGRYEGVDQRFIERCVTHELSLGDFVLSGGELAALAMMDAAVRLL
PGVLNDGDSALQDSFNAALDGLLDSPHYTRPEVYEGVPVPQPLLSGHHANIARWRREQSLRLTASRRPELIERARGEGRL
SKADERFLASLAGERES
>SEQF2266_AEE67160.1 class-V aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPATLTDELVAALRARTPGAQGAFIHFNHAGASLPSAGTLQAIKAHLRLEATQGPMEAGVQAREQAERARLLAARLLNAQ
PAEVALTTGNSAGWGAAFAALGPWRAGDRILVARHEWGGNLAAMRLAAQRAGATIGTIASDESGAVDPGALQAMLDERVR
LIALTWLPANGGLVNPAAAVGRIARRHGIAYFVDAAQAVGQLPIDVAEVGCDVLSGAGRKALRGPRGTGLLYVRQAFLER
LAPAWVDTWSAPLGEDGCPIVRGDAARFESAENSVALRCGLAHALHEALELDIASIRARIDAVATRLRTRLAALDGITLL
DQGRVRSGLIAFDVAGWQADAVQRELARQGIALGCNGVAYTPLDMQARGLRQIARASVSYLTTEAEIDALLDALAALARR
AP
>SEQF2266_AEE67161.1 hypothetical protein BPTD_1820 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTASISVRVAELGLTLEPANAPAANYVPFVRDGNLLYISGQVPRVDGKPVHLGRLGDSVSDEEGVQAARQAALGVLAQLA
AATGDRLQGVARIVRLGVFVAAAPDFNRHSAIANGASDLMVNVFGEAGRHARSAVGVASLPNGVAVEVEAVVALAQA
>SEQF2266_AEE67162.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67163.1 hypothetical protein BPTD_1822 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHAFYDSIPARADGSAQCAPLASLRVIGAAGADALAFLHGQLTQDVTGQPADHARLAGYCTAKGRLLATLVMWLAAAADE
SAPVWQALVRADVAEAVLKRLSMFVLRAKARLAPVPAWAAGVQCAPAALAALQDAAGGALPAAPWQRAELPTGTWIGAPS
ADAQPRWWWIATEAQLERAGALAAHLGRASESAWQAADLAAGLPWIGAATQDVFIPQTVNLDLIGGVSFTKGCYPGQEVV
ARSHYRGTVKRRMAHGVIAEAPADLPDPLAGQDIYDSARPDEPCGRVVDAARSDGQLALLFETTLASLPDGDLRLLSAQG
PRIALAPLPYELAGNAAG
>SEQF2266_AEE67164.1 hypothetical protein BPTD_1823 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKRIRFYFLLLVLVALLGAALAAGGAWTWMHRPVALKSDRIDFVVDPGSAPRAIARTLNQAGVAVWEPGFVWMARLSEL
DKQIKAGGYQAIDGDSPWQLLQRLARGDMSQRQITFLEGWTFRQMRQALREHPDVKQTLGETSDEALMERLGSTVTHPEG
MFFPDTYVFTPGSTDFDILRRAYQEGQRILESTWAKRQDGLPVGTPYEALILASIVEKETGHGSERARVAGVFANRLRIG
MLLQTDPTVIYGMGEAYQGRIRKRDLQTDTPWNTYTRPGLPPTPIAAPGRAALLAAVQPERHKYLFFVSRGNGTSEFSVN
LNDHNRNVSRYILGQGQPQQGSQQ
>SEQF2266_AEE67165.1 thymidylate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPRGRFITLEGVDGAGKSTHTAWMVQALRDLGLTVLATREPGGTPVGEKLRELLLSEPMALETETLLMFAARCEHVREV
IAPALARGEWVVCDRFTDASYAYQGGGRQLGAARVAALEQWVHPDLQPDRTWLFDVPLDVARARLARSRQLDRFEREEDA
FFERTRAAYHERARSSDGRIRIIDSSRPLEVVRAQLDSEVRELVAQAA
>SEQF2266_AEE67166.1 DNA polymerase III, delta subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLGRFLPWQTEIARSWLSGRDRFAHAWLIHGNGGIGKLDFTAAAAASLLCESPRQGLACGECAACAWVASGNHPDLRRI
RPEAVALEEGADQTEGAEEAEAGSGGAAAKRAPSKDIRIDQIRALEPWFNTATHRGGWRVALLYPAHALNVISANALLKV
LEEPPAHTVFLLVADAPDRLLPTLVSRCRRLPLPTPSAGQALQWLGEQGVEPAADWLAAAGGAPLAAQRLAARGDAPCPA
WLAQLVQPLAAGKAPDVGTLTENLEKVAAAEWIDALQRLFTDLTLAAHGAASRYYPLLAEPVRQAAARAQPAQLAETARW
LSRQRGLATHPLNAKLFVHAALQRVVLSCQ
>SEQF2266_AEE67167.1 hypothetical protein BPTD_1826 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYVDSHCHLNFPELAQDLPAVLDRMAANQVTHALVVSVNMPDWPGLMQLVEPHGNLWASVGVHPDYEDTPDPEPAELERL
AAHPKVVAIGETGLDYYRLSEPLDWQRERFRRHIRAARSTGLPLIVHTRASAQDTVRLLREEGADEVGGVMHCFTESWEI
AQQAVALNFHISLSGIVTFKNAQLVHEVAANMPLDRLLIETDSPYLAPVPYRGKLNDPSKVIHVAEKIAELKGIPVAEVA
HASTENFFKLFNKIKR
>SEQF2266_AEE67168.1 hypothetical protein BPTD_1827 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPLRTRFLRWRGAAAGGLLAGALLASPAWAAKQADWWVYVHNDKARDIGALLAAGADPNVRYDNGQPAIMRAVVDNAWE
VFDVLAANRRTDLNAENPAGETPLMYLAVAGQTERAQALIARGAQVNRLGWTPLHYAASKGRLETARMLLGKQALVNAPS
PDGTTPLMMAAYSGDRRMVQLLLDAGADITTRNLKGMSAADWAAFGKSEALARELKPMIARAEAERQARHGAVATSKLAP
AAETPPTAQPAAASAAASQPGEGRSLSGVSGVRLNSYD
>SEQF2266_AEE67169.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQEQAIAGGAERVLYVLATLAREEAPLTVAALAERTGLAQSTLYRQVALLKRWGFVLEQAGAYTPGPLCVQLARGFDQSS
YLIQEALPDMTRLAADSGETVGLLVAMSDQAVCLEMVESRHPLRCSFVKGRGLPPLARGASAKSLMAFMAPARLQGRLHE
LAGQGVDAAALARDLEAIRAAGYAVSDSEVDAGVWGCSAPVFERPHQAAGSVTLMAPSTRVAERTANLINLTLAAAKRIS
SRLQHS
>SEQF2266_AEE67170.1 putative glutamine-binding periplasmic protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTRRQLLTAALTLNLAWGAGAAHAQETIRAVTDATFPPMEFVKDGKRTGFDIELVEALAQAMGKKIEWIDIDFKGLIPA
LQAGRADIAVSAIYITAERQKVVDFTDPYYAGGLVVLTKKDGPVKSLKDLEGRKVSVQVGTKSVNYLKEHFPKVQRVEVE
KNQEMFNLVQIGRADAAVTGKPAAKLFAQSTQNLAVLSEQITTEEYGIAVPKSKSGLTRELNEALKKLKADGTYERIVNK
WFEAQAK
>SEQF2266_AEE67171.1 glutamine transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTQEMIRIRGLRKAYGEHEVLRGIDFNVEASQVVVVIGPSGSGKSTLLRCCNGLEVAQGGTIDICGHNLLKDGRLLPEA
ELNRLRMQVGMVFQGFNLFPHLSVLDNVTVGPRTLRGMSRAQAEELGGDLLAKVGLREKMAAMPGSLSGGQKQRVAIARA
LAMQPRVMLFDEPTSALDPELVGEVLQVMKLLAREGMTMMVVTHEMGFAREVADVVAVMDGGSIVESGPPELIFSQPREA
RTRAFLQAVLSASQGAA
>SEQF2266_AEE67172.1 glutamate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQAPAHSLPSYLDAEHLGPWGIYLQQVDRVTPYLGPLARWVETLKRPKRALIVDVPIEMDNGSIAHFEGYRVQHNTSRG
PGKGGVRFHQDVTLSEVMALAAWMSIKNAAVNLPYGGAKGGVRVDPRTLSHSELERMTRRYTSEIGVIIGPSKDIPAPDV
NTNAQTMAWMMDTYSMNEGATATGVVTGKPIALGGSLGRVEATGRGVFVVGCEAARDLNLDVSKARIVVQGFGNVGGTAA
RLFHEAGAKVIAVQDHTGTIHNDGGLDVHKLLAHVGNQGGVAGFTGAQQLADDDFWGLETDFLIPAALEGQINENNAARV
RAKVVVEGANGPTTPEADDILRENGVYVVPDVLANAGGVTVSYFEWVQDFSSFFWSEEEINQRLERLMREAYSAVSQVAK
EHKVTLRTAAFIVACTRILQARQVRGLYP
>SEQF2266_AEE67173.1 allantoate amidohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNNSPISIDGQRLWQSLMDLARIGATPKGGNCRLALTALDGQGRDLVTGWMRDAGLTVRVDQVGNIFARRAGRDPSRAP
VMTGSHIDTQPTGGKFDGCYGVLAGLEVMRTLDDHGVQTDAPLEVAIWTNEEGSRFLPVMMGSGVFAGKFPLETALTARD
AEGKSVADELRAIGYAGADPVGGRAVDAYFEAHIEQGPILEHEDRIVGVVTGSLGVRWYDVVVQGMEMHAGPTPMPIRKD
ALYAASHLLQAVVEIANAHQPHGRDTVGEIHAYPGSRNVIPGQVRFTVDLRHEDEATLATMDALWRQACADTAARHAVSV
QCEQVQYFAPTPFHPDLVGKVRDGAQRRGLPAMDIVTGAGHDAVYMAAVAPTAMIFVPCKDGISHNEIEDAQPAHLEAGC
NVLLDAMVARANAPR
>SEQF2266_AEE67174.1 thiamine pyrophosphate protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTPALPERNGGQILMQQLRVHGARRVFMIPGESYLPCIDALNEHRGAIDAIVCRQESGAAYMAEAYGKLTGEPGICFVT
RGPGATNASIGVHTAYQDSTPMILFIGQVGNDFMEREAFQEIDYRRMFGQMAKWVAQIDRTERIPEFIARAFAVATSGRP
GPVVLALPEDTLWGRARVADMPRYRRARCLPGAADLARMVELLDQAKRPFMLLGGTGWSAEAIGQAAAFAERFELPVGTA
WRRLECFDQRHPNAAGHVGWAMAPELRQRIAGADLVLAVGTRMGEATTEGYTVIESPLPRQRLVHVYPDPNELGRVFAPT
LGIVADPAGFAAALDALRPGHRASRAQAVRAAHDEYLATLAPLPSPGPLNLDSAAAYVNQHIPADACITVGAGNYALYPH
RYRQFSGPGTSLAPTVGAMGYGLPAAISAKLENPARTVVCYAGDGCFQMNMQELGVALQYRVGVVVLVFNNGIWGTIRAH
QEREFPGRAIALDFQNPDFTQFVRAYGGYGEAVERTEDFGPAFERARAFAEREQLPALLEIRYEADGIAPGQTLTEIRQA
AQAQAAGVQ
>SEQF2266_AEE67175.1 citrate lyase beta chain [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPISNPGGQRRPASLRRSWMFVPGLLEQAQAAGLASGADALVADLEEFTAPADRPAARRRIVALLAQCRAAGVIGAVRI
NKLEEDGLDDLRGIMAGAPDAIFLPHAESAAQIAALDRAISACEAEAGLAPGSTEIVPTLESALGVTRACEILTASPRVS
ACLLAAEDLTASLGAERGPDGIELHALRARFLVDCVAAGCLPIDCPFNYRDPAAQQADLLWARRIGLKSKCAVFAEQVPA
IHAAFTPDADRVAAARDLAARFEAQRDGRDAGGARVDPPDYNTARRLLARHAEFEQWAARAARPRESQGEQS
>SEQF2266_AEE67176.1 hypothetical protein BPTD_1838 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTGALFLMGVFTVTVLIDMPIAFGLVLACLAYLAVYDAAPMMVAAQQYVVGLDSFTLLAIPLFILAAQLMNGAGLTQRI
VRLCAAIVGDIKGGLAVVAVLACLMFGALSGSGVADVIAIGSLLLPAMARSGYDKGFSCALIGSAGATSTIIPPSIVLIV
YGTITDTSVGKLFLAGIIPGILLGASLIVVAIWQARKHNWAGGQPFSWGELRAAAIDALPALMVPVLIIGGIRFGIFTAT
EAASSAIVYALLVGFFWYRTLSLKSLWESLKSTGEGSASILLLIGASGLFAWVLVAEQVPQALSGLLVDWTDSKIAVLLV
LTVVLLLLGIFMEAIPVIIIVAPVVMPVLAHYNIDPVHFGILLSINMAIGANTPPVGVDLMAACKIGGINMMQTLRPLSW
MMLAMTAVMLLLTFVPELVLFLPRHVQ
>SEQF2266_AEE67177.1 hypothetical protein BPTD_1839 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLGRISHALSGLSKAIAALAVALLAALITYVVFERFVMHTTPHWAEELPRLVLVWAAFIGGVTCSHERTHLMAGLLPFVV
RNPRALAISDRVNQALIIVGLAALGYAGWQLAELTMDQTLPALDVSAGTVYLALPAACAITIVVHLAQLFQPADPVAAKD
>SEQF2266_AEE67178.1 hypothetical protein BPTD_1840 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLTRTLTSLFAAAGLALAVAPAAHALDIKLGHVLAPSHSWNKAAEGFAAEVKEKTAGRVNLILFPSGQLGNEKTMLEGL
QIGSQGAAIIGSGSLQPIEPKFGIVELPYTWTTSQQAYKAYDGELGAALAKLAEKKNLVIVSWWENGFRHLTNNRGPVNT
PADLNGLKTRVTPDKMRLDTFTALGANPAPLAFGELYSALQQKVFDAQENPLSIIYTSSFFEVQKYLSLTGHVWGPASLI
VSKPIWNRISADDRKIVQAAADKWRDAQRQMITEGDLQFVAQLKEKGMQVNEVDKAPFAAAVAPIWKTYETAYGPELMGL
LQKYREAK
>SEQF2266_AEE67179.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGSFQAVAPTRLYRMIADQIAGRIRAGDFPAGGRLPAERELAEQLQVSRASVREALIALEIEGYVEVRVGTGVFVAAPRA
DGDYGVAPAPQPGHTDIGPFDLLDTRLLLEPECASLAAQKASPAQIAAISSAHAAMSLSDSPGAHDQAFHGAIAAACGNA
ALAAAISHIWHLSATSPVFSRLEQHFVTTKVWEAAEREHERILAAIVDRDPIRARHAMHDHLVGILARLREDFGSGAIR
>SEQF2266_AEE67180.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67181.1 amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPTLKQQSLALQEGRDTSSGLTQAALARAADPAGEGARVFTRVYAEQARAEARAADALRAAGVTRSAIDGLPISIKDLF
DVAGETTMAGSVARQGEPAAVRDAVVVRRLRAAGAVIVGRTNMTEFAYSGLGLNPHYGTPRNPWDRATGRIPGGSSSGAA
VSVTDGMASGAIGSDTGGSVRIPAALCGLAGFKPSAQRVSMQGVLPLSANLDSIGPLAPSVRCCATLDAILAGGDDADMP
APAALRGLRLAVPTTLALDGLDAHVSATFAATLAKLAEAGACIDEIAVPEFAQLADINSKGGFTAAEAWAWHRDLIERAA
DRYDPRVVARIRRGADMSAADYIDLLAARQAWRAGVEARIAGYDALVLPTVPVVAPAIADLEASDALFGSTNLLILRNPT
LINFLDGSALSLPCHEAGTAPVGLMVAAANGSDRRVLAIGMAIEDLLGG
>SEQF2266_AEE67182.1 hypothetical protein BPTD_1848 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTILSLAGAGHQARLDARGGMLTGPTANLAPGHVQANLAILPQAVAGDFLRFCQRNPKPCPLLAVSEPGDPSLPELGLDI
DIRTDVPRYRVWRDGKLVDEPLDVRGLWRDDLVAFLIGCSFSFEEAMLENGLPVRHIEQGCNVPMYRTNIATHPAGPFSG
PLVVSMRPLKAADAIRAIQVTSRFPSVHGAPVHLGDPALIGIADLGRPDYGDAVEIRAGEIPVFWACGVTPQSVVAAVRP
EFCITHAPGHMLVTDLLNSRLAAF
>SEQF2266_AEE67183.1 regulatory protein BvgR [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIHWTNSARSSFEASLSPSRRTLRARLAPVEGPTVAELRAALKRDEFIPAFQPVVDAGTGSLFGVATTIQWAHRHWGLVP
EHCYMAALVRDNLHIALAQQLLAQVFDLAAAMRRGNRHVGLFIQPEPICLMSRSYSDDVLRNLDHRGLPPFALTLAVSPS
LLQSPYGQQSLHSLRRLHRAGCNLVLTVSTFDAESPPHLDALEICGIALMPELMYALRQGGRAGEACRAIAQQASAQRIP
VMAAGVVDEAMAQAADLLPCRYLLGDHVAPPMTGQRFLYWYYRREMPPNYP
>SEQF2266_AEE67184.1 virulence sensor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAPHRLYPRSLICLAQALLAWALLAWAPAQASQELTLVGKAAVPDVEVALDGDDWRWLARKRVLTLGVYAPDIPPFDVT
YGERYEGLTADYMAIIAHNLGMQAKVLRYPTREQALSALESGQIDLIGTVNGTDGRQQSLRLSVPYAADHPVIVMPIGAR
HVPASNLAGQRLAVDINYLPKETLARAYPQATLHYFPSSEQALAAVAYGQADVFIGDALTTSHLVSQSYFNDVRVVAPAH
IATGGESFGVRADNTRLLRVVNAVLEAIPPSEHRSLIYRWGLGSSISLDFAHPAYSAREQQWMADHPVVKVAVLNLFAPF
TLFRTDEQFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAKLRSGEADMAGALFVNSARESFLSFSRPYVRNGMVIVTR
QDPDAPVDADHLDGRTVALVRNSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRI
ASALDLPPAEIALATTRGQTELMSILNKALYSISNDELASIISRWRGSDGDPRTWYAYRNEIYLLIGLGLLSALLFLSWI
VYLRRQIRQRKRAERALNDQLEFMRVLIDGTPNPIYVRDKEGRMLLCNDAYLDTFGVTADAVLGKTIPEANVVGDPALAR
EMHEFLLTRVAAEREPRFEDRDVTLHGRTRHVYQWTIPYGDSLGELKGIIGGWIDITERAELLRELHDAKESADAANRAK
TTFLATMSHEIRTPMNAIIGMLELALLRPTDQEPDRQSIQVAYDSARSLLELIGDILDIAKIEAGKFDLAPVRTALRVLP
EGAIRVFDGLARQKGIELVLKTDIVGVDDVLIDPLRMKQVLSNLVGNAIKFTTEGQVVLAVTARPDGDAAHVQFSVSDTG
CGISEADQRQLFKPFSQVGGSAEAGPAPGTGLGLSISRRLVELMGGTLVMRSAPGVGTTVSVDLRLTMVEKSVQAAPPAA
ATAATPSKPQVSLRVLVVDDHKPNLMLLRQQLDYLGQRVIAADSGEAALALWREHAFDVVITDCNMPGISGYELARRIRA
AEAAPGYGRTRCILFGFTASAQMDEAQRCRAAGMDDCLFKPIGVDALRQRLNEAVARAALPTPPSPQAAAPATDDATPTA
FSAESILALTQNDEALIRQLLEEVIRTNRADVDQLQKLHQQADWPKVSDMAHRLAGGARVVDAKAMIDTVLALEKKAQGQ
AGPSPEIDGLVRTLAAQSAALETQLRAWLEQRPHQDQP
>SEQF2266_AEE67185.1 virulence factors transcription regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYNKVLIIDDHPVLRFAVRVLMEKEGFEVIGETDNGIDGLKIAREKIPNLVVLDIGIPKLDGLEVIARLQSLGLPLRVLV
LTGQPPSLFARRCLNSGAAGFVCKHENLHEVINAAKAVMAGYTYFPSTTLSEMRMGDNAKSDSTLISVLSNRELTVLQLL
AQGMSNKDIADSMFLSNKTVSTYKTRLLQKLNATSLVELIDLAKRNNLA
>SEQF2266_AEE67186.1 filamentous hemagglutinin/adhesin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTNLYRLVFSHVRGMLVPVSEHCTVGNTFCGRTRGQARSGARATSLSVAPNALAWALMLACTGLPLVTHAQGLVPQGQT
QVLQGGNKVPVVNIADPNSGGVSHNKFQQFNVANPGVVFNNGLTDGVSRIGGALTKNPNLTRQASAILAEVTDTSPSRLA
GTLEVYGKGADLIIANPNGISVNGLSTLNASNLTLTTGRPSVNGGRIGLDVQQGTVTIERGGVNATGLGYFDVVARLVKL
QGAVSSKQGKPLADIAVVAGANRYDHATRRATPIAAGARGAAAGAYAIDGTAAGAMYGKHITLVSSDSGLGVRQLGSLSS
PSAITVSSQGEIALGDATVQRGPLSLKGAGVVSAGKLASGGGAVNVAGGGAVKIASASSVGNLAVQGGGKVQATLLNAGG
TLLVSGRQAVQLGAASSRQALSVNAGGALKADKLSATRRVDVDGKQAVALGSASSNALSVRAGGALKAGKLSATGRLDVD
GKQAVTLGSVASDGALSVSAGGNLRAKQLVSSAQLEVRGQREVALDDASSARGMTVVAAGALAARNLQSKGAIGVQGGEA
VSVANANSDAELRVRGRGQVDLHDLSAARGADISGEGRVNIGRARSDSDVKVSAHGALSIDSMTALGAIGVQAGGSVSAK
DMRSRGAVTVSGGGAVNLGDVQSDGQVRATSAGAMTVRDVAAAADLALQAGDALQAGFLKSAGAMTVNGRDAVRLDGAHA
GGQLRVSSDGQAALGSLAAKGELTVSAARAATVAELKSLDNISVTGGERVSVQSVNSASRVAISAHGALDVGKVSAKSGI
GLEGWGAVGADSLGSDGAISVSGRDAVRVDQARSLADISLGAEGGATLGAVEAAGSIDVRGGSTVAANSLHANRDVRVSG
KDAVRVTAATSGGGLHVSSGRQLDLGAVQARGALALDGGAGVALQSAKASGTLHVQGGEHLDLGTLAAVGAVDVNGTGDV
RVAKLVSDAGADLQAGRSMTLGIVDTTGDLQARAQQKLELGSVKSDGGLQAAAGGALSLAAAEVAGALELSGQGVTVDRA
SASRARIDSTGSVGIGALKAGAVEAASPRRARRALRQDFFTPGSVVVRAQGNVTVGRGDPHQGVLAQGDIIMDAKGGTLL
LRNDALTENGTVTISADSAVLEHSTIESKISQSVLAAKGDKGKPAVSVKVAKKLFLNGTLRAVNDNNETMSGRQIDVVDG
RPQITDAVTGEARKDESVVSDAALVADGGPIVVEAGELVSHAGGIGNGRNKENGASVTVRTTGNLVNKGYISAGKQGVLE
VGGALTNEFLVGSDGTQRIEAQRIENRGTFQSQAPAGTAGALVVKAAEAIVHDGVMATKGEMQIAGKGGGSPTVTAGAKA
TTSANKLSVDVASWDNAGSLDIKKGGAQVTVAGRYAEHGEVSIQGDYTVSADAIALAAQVTQRGGAANLTSRHDTRFSNK
IRLMGPLQVNAGGAVSNTGNLKVREGVTVTAASFDNETGAEVMAKSATLTTSGAARNAGKMQVKEAATIVAASVSNPGTF
TAGKDITVTSRGGFDNEGKMESNKDIVIKTEQFSNGRVLDAKHDLTVTASGQADNRGSLKAGHDFTVQAQRIDNSGTMAA
GHDATLKAPHLRNTGQVVAGHDIHIINSAKLENTGRVDARNDIALDVADFTNTGSLYAEHDATLTLAQGTQRDLVVDQDH
ILPVAEGTLRVKAKSLTTEIETGNPGSLIAEVQENIDNKQAIVVGKDLTLSSAHGNVANEANALLWAAGELTVKAQNITN
KRAALIEAGGNARLTAAVALLNKLGRIRAGEDMHLDAPRIENTAKLSGEVQRKGVQDVGGGEHGRWSGIGYVNYWLRAGN
GKKAGTIAAPWYGGDLTAEQSLIEVGKDLYLNAGARKDEHRHLLNEGVIQAGGHGHIGGDVDNRSVVRTVSAMEYFKTPL
PVSLTALDNRAGLSPATWNFQSTYELLDYLLDQNRYEYIWGLYPTYTEWSVNTLKNLDLGYQAKPAPTAPPMPKAPELDL
RGHTLESAEGRKIFGEYKKLQGEYEKAKMAVQAVEAYGEATRRVHDQLGQRYGKALGGMDAETKEVDGIIQEFAADLRTV
YAKQADQATIDAETDKVAQRYKSQIDAVRLQAIQPGRVTLAKALSAALGADWRALGHSQLMQRWKDFKAGKRGAEIAFYP
KEQTVLAAGAGLTLSNGAIHNGENAAQNRGRPEGLKIGAHSATSVSGSFDALRDVGLEKRLDIDDALAAVLVNPHIFTRI
GAAQTSLADGAAGPALARQARQAPETDGMVDARGLGSADALASLASLDAAQGLEVSGRRNAQVADAGLAGPSAVAAPAVG
AADVGVEPVTGDQVDQPVVAVGLEQPVATVRVAPPAVALPRPLFETRIKFIDQSKFYGSRYFFEQIGYKPDRAARVAGDN
YFDTTLVREQVRRALGGYESRLPVRGVALVAKLMDSAGTVGKALGLKVGVAPTAQQLKQADRDFVWYVDTVIDGQKVLAP
RLYLTEATRQGITDQYAGGGALIASGGDVTVNTDGHDVSSVNGLIQGRSVKVDAGKGKVVVADSKGAGGGIEADDEVDVS
GRDIGIEGGKLRGKDVRLKADTVKVATSMRYDDKGRLAARGDGALDAQGGQLHIEAKRLETAGATLKGGKVKLDVDDVKL
GGVYEAGSSYENKSSTPLGSLFAILSSTTETNQSAHANHYGTRIEAGTLEGKMQNLEIEGGSVDAAHTDLSVARDARFKA
AADFAHAEHEKDVRQLSLGAKVGAGGYEAGFSLGSESGLEAHAGRGMTAGAEVKVGYRASHEQSSETEKSYRNANLNFGG
GSVEAGNVLDIGGADINRNRYGGAAKGNAGTEEALRMRAKKVESTKYVSEQTSQSSGWSVEVASTASARSSLLTAATRLG
DSVAQNVEDGREIRGELMAAQVAAEATQLVTADTAAVALSAGISADFDSSHSRSTSQNTQYLGGNLSIEATEGDATLVGA
KFGGGDQVSLKAAKSVNLMAAESTFESYSESHNFHASADANLGANAVQGAVGLGLTAGMGTSHQITNETGKTYAGTSVDA
ANVSIDAGKDLNLSGSRVRGKHVVLDVEGDINATSKQDERNYNSSGGGWDASAGVAIQNRTLVAPVGSAGFNFNTEHDNS
RLTNDGAAGVVASDGLTGHVKGDANLTGATIADLSGKGNLKVDGAVNAQNLKDYRDKDGGSGGLNVGISSTTLAPTVGVA
FGRVAGEDYQAEQRATIDVGQTKDPARLQVGGGVKGTLNQDAAQATVVQRNKHWAGGGSEFSVAGKSLKKKNQVRPVETP
TPDVVDGPPSRPTTPPASPQPIRATVEVSSPPPVSVATVEVVPRPKVETAQPLPPRPVAAQVVPVTPPKVEVAKVEVVPR
PKVETAQPLPPRPVVAEKVTTPAVQPQLAKVETVQPVKPETTKPLPKPLPVAKVTKAPPPVVETAQPLPPVKPQKATPGP
VAEVGKATVTTVQVQSAPPKPAPVAKQPAPAPKPKPKPKPKAERPKPGKTTPLSGRHVVQQQVQVLQRQASDINNTKSLP
GGKLPKPVTVKLTDENGKPQTYTINRREDLMKLNGKVLSTKTTLGLEQTFRLRVEDIGGKNYRVFYETNK
>SEQF2266_AEE67187.1 chaperone protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARWRRRLGVAALGAAMLASLAPAARASLVITGTRVIYNAGSPETTVKMSNEGQAPALMQAWIDDGNAEAKPDEVQVPFF
LTPPLARVDPGKGQTLRIFFNGYPDGKTLPSDRESVFWLNVLEVPPKATPEEGHGVLQLTIRSRLKLFYRPKGLSGNPLT
AAADLTFKRKPNGVLEVHNPTPYYVNLQKLEVGENGAHGSKTPWMLAPLSSDELRLKGTGAKSVQYWAIDDFGGVTPYQA
AIAD
>SEQF2266_AEE67188.1 outer membrane usher protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQIPLILAMSLAFAAAAKGESAPDMQAAVNFDSAMLWGGANGADLSRFNYSNALRPGNYIVDIYANNYPLIRQQVRFVA
AQTSGQGLKTAPAVACFTYGQLEAMQVRLRALDPALVADLKSSGRCEVLGKLFPDSRESFDFGENRLEVSIPQAYTINRF
RRDISPDEWDSGITAFRLGYQYNYADYIGGLRAGRRLDLNLYSGFNFKGWYLRNSSTLGWGQGRFTRRSQRTSLQTDIPS
WRARLVFGDVFSSGEYFAPYSMRGMLVGSDTAMLPYSERLYRPTIRGVARTRANVKVYQAGVLVFQDAVPPGPFAIDDYS
PASYGGDLRVVVTEANGAVQTFTVPYASAVRLILPGQTQWSFSAGRYRNYRNDGQDRPWVTQLTGRHGVADGVNLYGGLL
IAQAYQAGLAGLSWNTPWGAMAADATLSRSQLSTTGNANGSSLRFSYSKTLSGTNTAIRLATLRYSSSGFWNFADAVNAG
PVETNGRNGRFGLYSLLGRERPRGDFSVTLSQPLGGYGSLYVSALRRTYWGSSRVDQQTQLGYSTQVGRVGVNLDVSRTE
NRRSTEHQVMLNLSIPLYGATSSGVVTGSLARTGSAPVQQSVNYSGMSGERDQYTYGLGVQRAGTSAQYALNGSWSGTYG
EVSGQLTHGRSYSQYQINGSGGLVAHAGGVTFGQYQAGTIGLIQAEAAAGAKVVNTRNAAVDRSGYGLVSLTPYSLNEVE
LSPQDLPLDVQLESTVEQVIPRAGAVVALRFPTRHDVAAMLVAEPGSEGALVFGTEVRDGAGKVVGVAGQGASALVRGVS
ASGTLEVTRADGSICRATYDLKSAGQAVHGLPRIALACAPQGGGERGARAAGQAVAQPSAISISGKDHEPDIR
>SEQF2266_AEE67189.1 fimbrial adhesin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPARVISFCGAALAVWAGLAVQPAMAVDPPVDCGRALGLHFWSSASLISDQTPDGTLIGKPVVGRSLLSKSCKVPDDIKE
DLSDNHDGEPVDIVLELGSNYKIRPQSYGHPGIVVDLPSGSTEETGIAIYIDFGSSPMQKVGERQWLYPQKGEVLFDVLT
INGDNAEVRYQAIKVGPLKRPRKLVLSQFPNLFTYKWVFMRGTSQERVLAQGTIDTDVATSTIDLKTCRYTSQTVSLPII
QRSALTGVGTTLGMTDFQMPFWCYGWPKVSVYMSATKTQTGVDGVALPATGQAAGMASGVGVQLINGKTQQPVKLGLQGK
IALPEAQQTESATFSLPMKAQYYQTSTSTSAGKLSVTYAVTLNYD
>SEQF2266_AEE67190.1 hemolysin activator-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDATNRFRPGLVGRALVRAGLLFAVAACAQAQLLPGARDLNRIDDRQRKEQLQRDIERALTRPPVELNPQSEAAAPARK
PDATSGHTVTVHAVDLDFGVEGRLFDPAPLVQDYLNRPLDNEQLFLLVKALSAALYDRGYATSIVTFVPPGVVDGVLKLK
VEWGRIKGWLIDGKPLEGTRDRMMVFSAMPGWQDKVLNVFDIDQAIYNINNGGKTGNITIVPADEYGYSYLDLQLQRRAL
PRVSLGMDNSGPGTPENGRYKYNASVTANDLLGLNDTLGLYIGNRYYRDAGHDAERNYDLMYSVPLGRTRLDLQTGYSTY
RNLLKTRYGQYQSAGNSRSFGLKATRLLYRDTRSQFSVYGGLKLRQNKNYLAGTRLDVSSKHYSDVTVGMQYSTQRGANA
YFGDLSFTRGVGVNNGKYAAYDERGPQGNVSRFNGSLAWTRYMALAGQPIQWASQLGFQYSRQQLLNSYQITVGDEYTVR
GYNLRTSQSGDSGVYLSNTLTVPVQFSLLGKQASVAPFVGADVGALKSNHPDARTIRMAGLAAGVRFDLPYARMSFTYSK
PVGAQPGGAPRAPVWLYINAGLSF
>SEQF2266_AEE67191.1 hypothetical protein BPTD_1859 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRFLDRLYGAAGLLAGLCTIGVLVSVLAAIIARQVGLNIPGTDAYAGYFMAAAGFLALASTLKHGEHIRVTLLLNALPA
PGHRRLDIFALCVGAILAAAFAWFSVKLAHDSWLFNDISTANDATPLWLPQLTMAAGTILFFIALLDELVRRVRGQGFAK
SQQIHE
>SEQF2266_AEE67192.1 hypothetical protein BPTD_1860 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYKKLSLLAGTIVLAFGAGAQAQTKWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGN
QAQIGEILLTNFANEDPVYELDGLPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQGIFANRDIKQVSDMK
GLKWRAYSPVTAKIAELVGAQPVTVQQAELAQAMATGVIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNKKAF
DALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRMLDDWLKKAGADGQAMIDA
YRKQ
>SEQF2266_AEE67193.1 hypothetical protein BPTD_1862 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPILDRIAVASGAVAALFLALIGAIVAAQIASRLIGMQIPAADDFAAWSMAASVFLALPYAMLRGDHIRVTLLLQFLPKT
AHRPYELAATALGLALSAWAAWQTAGFVHESFAYDEVAQGMLRVPLWIPQICMPIGLALLTLMLARRLAMVARGRQPEET
AHG
>SEQF2266_AEE67194.1 hypothetical protein BPTD_1863 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTTFAVLAAALALSTGAQAATSWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVV
QIGEVLVSALGNEDPLFEIDSVPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQGIYTKKPVAALADLKGT
RFRAYSASTSHMAALMGAVPTTVQTPEVPQAFSTGVIDAMLTSPATGVDSQAWDYVKYYYDAQAFIPQSFVIANKRAFQR
LPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMSVEPLPPQLAKELQAIGATMVSDWSKKAGADGQQLLDAYR
K
>SEQF2266_AEE67195.1 hypothetical protein BPTD_1864 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEKHVAAPIRHDRDAMGELFIWTDIDPAHEEDFNQWYDREHMAERAGIAGFRWARRYRSQHGRRRYLALYRTEDLHVFGS
AAYRQAFERQTPWSLANFARMRDTHRRVMVVSPLAGAGTGAALGLLRLGSVELAARAAALAASAQEIEGVLALRVLTPDP
QLSTPLPSEDPAARVLDPVLIIDATTEPAAAAARSLAEQLELPTDGIQTFHLLWDLRADDLRAAP
>SEQF2266_AEE67196.1 hypothetical protein BPTD_1866 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSTPLIASSAHLASGRAPDLSEVEFGLMIASHAFNRWTVRCMAAVGLPDLTANDVMVMHHVYHRQRPKKLADICFTLNV
EDTHIVSYSLKKLERHDVVRGDRSGKEVFYSVTPKGAEIIKRYAEVREQCLLDGLEAGAAGGLEFTRQLAHTLRSLSGLY
DQAARAATSL
>SEQF2266_AEE67197.1 5-oxoprolinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKWQFWVDRGGTFTDIVARRPDGATVTAKMLSENPEQYRDAAVAGIRKLLGIAPGQPVPADQVECVKMGTTVATNALLER
KGERTLLVTTRGFRDALRIAYQSRPRLFDRNVQLPEMLYEAVVEADERLAADGTVVRALAEDGLRADLRRVFDDGIRAVA
IVFMHAWKEGVHEQRAAAIAREIGFTQVSTSHEASPLIKFVSRGDTTVVDAYLSPILMRYVEQVGSELPGVRLMFMQSSG
GLTDAHRFRGKDAILSGPAGGIVGMVRTSELAGFDRVIGFDMGGTSTDVSHYAGEFEREFETLVAGVRMRAPMMSIHTVA
AGGGSILHFDGARLRVGPDSAGANPGPACYRRGGPLAVTDCNVLLGKIQPDFFPSVFGPDADQPLDVAAVRARFAAMAEE
VRTATGREMSAEQLAEGFLEIAVGNMAEAIKRISVQRGHDVTEYALTTFGGAGGQHACLVADALGMTTVFAHPLGGVLSA
YGMGLADQTEMRQKTVEQVLDAALMAQLEAGLDELAGQASAELLRQHVPADKVAVQRRLHLKYRGTDTALEVAFGPLEQV
RAAFEAGYRQRYSFLMPGRELVVETISVEATGGGEAATEAPVTRTRAAPLAARRTIRMFSAGQWRETPLYVREDLAPGDM
MAGPAIISEPNQTTVIEPGWQAEVTPRDHLVLRRVQARVQRRAIGTQADPVMLEVFNNLFMSIAEQMGYRLQNTAYSVNI
KERLDFSCAIFDAEGNLIANAPHMPVHLGSMGESIKTVMRANASRMRPGDAYVVNDPYHGGTHLPDVTVITPVFDRAGQD
ILFFVGSRGHHADIGGTTPGSMPPDSRTVEDEGVLFTNFQLVGNGEFRDREAREILASGRWPARNPDQNIADLHAQIAAN
EKGVQELLRMCDHFGLDVVRAYMGHVQDNAEEAVRRVISVLKDGRYTYRLDNGAVIEVAVRVDRQARSAVVDFTGTSGQL
ENNFNAPGAIAVAAVLYVFRTLVDDEIPLNAGCLKPLEIIIPEGSMLRPNPPASVVAGNVETSMCIVNALYGALGVLAAS
QGTMNNFTFGNARYQYYETISGGTGAGPLRIDAAGPADAGFAGTSVVQAHMTNSRLTDPEVLELRFPVRLESYEIRHGSG
GAGRYRGGDGGVRRVRFLEPMTAAILSNNRRHAPFGLAGGEAGAMGRNYVERADGRVEPLGPQDSAELAAGDVFVVETPG
GGGYGPA
>SEQF2266_AEE67198.1 hypothetical protein BPTD_1868 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFKPVSITGTRRQTGQALGKLARPLMATYLEQSTVWAALRPWRGHAYLEALAHEASQALPEIWDELEGLAEGLRMPLVD
ILLWNCRGDLLHKTSDGCTSIAWRGDEDTRWIAHNEDGDPFLYGRCHMVDVRPDDAPGYISFYYPGSLPGHTFAANRAGL
VQTINNVRIRQRHAGVPRMLLARAVLDCATLDDALAVLRDHPRAGGFHHTLGAAGEPRLYSVEASPAACSIGEVARGNGH
ANHLVHPGSEAIGQIVTDSSRSRQRHIENLMDHWQPPVDGARLVATLLDREGELPILRCSADDPDEENTLATALFEMRDG
GLTLQVHDRRDQPALRVTVCPAA
>SEQF2266_AEE67199.1 hypothetical protein BPTD_1870 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKETLNEISTLMPQLVDLGINLGVALLILILGWWASSLLGGWVRRAAQRSPRIDPTIVPMFQSTVIWTVRIFTLIAVLAR
FGVQTASLIAVLGAAGLAVGLALQGTLQNIAAGIMLLILRPIRAGEYVALSSGSDGTVEEVGLFLTRLVQVDGIHITLPN
STVWNATIINYSRNANRRLDIPVTVHYGDDLGEAIARLEALVRGHEMVLQDPAPIVKASEYRDNGTVVNVRVWTQAAQYW
DLRWDLFHQIRRALGEAGFRAPIPVREIQGGGKDAAA
>SEQF2266_AEE67200.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQETDSGAGPRTLRRGLMVLAALRDQGPRGLSVTDIARQTGIQRPTIYRLLAALLDAGLVVPLQGTKKYRTQLAADADLA
APNPRVRQMLPVLRRLADRTGDAVFLVVRDGDDSVSLHREIGSYPVQILATYAGKRQPLGVGSGSMALLAALPDEVAHAI
VQRNSGRLDEYGGMTPQEMHRLIENTRARGYSVVGNHAVRGALGVGCALLDAQGAPVLAVSVTAIIDRMPAQRQREIAGW
IGAELARLAPKA
>SEQF2266_AEE67201.1 hypothetical protein BPTD_1872 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKSQLPRLGRFAVRLFAGILGAAAIGATAHTAYPDKPVRIVVGFSAGGTTDVIARIMAKELTEALGQSFVVENKPGGGS
NIATDYVARATPDGYTLLFVAVTSAINQTLYKNVNFDLTKDFAPVALGAKVPNILVLNPSVPVKSVQELVAYTKANPGKL
AFASSGSGTSIHMAGELFKQRAGIDVLHVPYKGSAPAVTDLIGGQVQFMFDNMPSSWPHVQAGKLRALAVTTTERSASAP
DLPTMKESGFENFDVSSWFGLIAPAGTPPEVVNTLNAAMVKALDKPEVLQSYEKLGAVAQKTTPAEFGAFIKSEVEGWAP
VVKASGATVD
>SEQF2266_AEE67202.1 methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQAFSRVRFIMTQPSHPGNVGSAARAIKTMGFGELVLVAPRFPDMTAQPEAVALASGALDVLERAAVHDTLEEALAPVT
LAFALTTRVRDLGPPPCDIREAAGLARRHLDDTEAGVVAIVLGTERAGLTNAQIELCHRICHIPANPQYSSLNVAQALQL
AAWELRYALLAGTGQSLLPASSAQQANPGAAPADGAAVQALLAHWEQALVAVGFLDPAHPKKLMPRMKHLLTRSALSRDE
VDMLRGVCTAMIAPNRPK
>SEQF2266_AEE67203.1 inositol-1-monophosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHPMLNTAIKAARRAGTIINRASLDLERLTVARKGPRDYVTEVDRASEEVIVEVLRTAYPDHAVLGEEFGLQGPEQAEFQ
WIIDPLDGTTNYIHGLPNYAVSIALLHRRQVTQAVVYDPSRNELFTASRGSGTFLNDRRVRVSGRIRYHDALLGAHWPHS
TDPDQGSGRFRAMAEGSASVRRLGSTVLDLAYVACGRLDGFCGVGLKPWDVAAGSLLVLEAGGLLADFDGEQGWLDTGNV
LAGTPKVFTHMLTALQPRTA
>SEQF2266_AEE67204.1 hypothetical protein BPTD_1875 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEWLQDPAAWVGLLTLVVLEIVLGIDNLIFIAILADKLPPAQRDRARIVGLSLALLMRLGLLSVMSWLVTLTTPWFSVGP
MSFSGRDLILMLGGLFLLFKGTMELHERIEGGQSLDTGGPRVYASFWVIVTQIVVLDAVFSLDSVITAVGMVDHLAIMMI
AVIIAIGIMLLASKPLTRFVNAHPTVVVLCLGFLLMIGFSLLAESFGFKVPKGYLYAAIGFSVAIEALNQVARRNLLKLD
ARRPMRERTATAVLRMLGKRPPASDESDLPSAMPAVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWVNIDDDAATI
RQQLTAAPHSFFPVCRGSLDEVVGIGRAKDLVADLITEGRVRRNRLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFG
AIEGLVTPIDVFEAIAGEFPDEDELPDIVAESENVWKVDGAADLHHLEQVLEIEGLIDESEDYSTLAGYLLARFGHLPKP
GDTCEFEGSHHRRVRFEVLQMDGRRVALVRVERLPYDTVDESEAADAD
>SEQF2266_AEE67205.1 undecaprenyl pyrophosphate phosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDSTLHLLKAFFLGIVEGLTEFIPVSSTGHLIVIGDWINFASSSGKVFEVVIQFGSILAVMWIFRARLWQLIRGTLTGV
RQEVNFTRNLLLAFLPAAVIGAIFIKSIKQVFYHPGVVAVTLVVGGFIMLWVERRAPHTPGDAPGAADDTASDERASAHT
LEQISAKQALGVGVAQCVAMIPGVSRSGATIIGGMIAGIQRKTATEFSFFLAMPTMLGAAVYDLYRNIGLLSQHDMSAIA
VGFVAAFLSALVVVRAVLRFVANHTYRVFAWYRIALGLVVAAWIYAK
>SEQF2266_AEE67206.1 UDP-2,3-diacylglucosamine hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWLASDLHLGPATPATAEAFLGLLQAAADEASALLLPGDIFDAWIGDDVIRAAPPWLAAVLHGIRAAAGRIPVYLGRGNR
DFLIGQELADALGAHLLPEPVLLETDYGRILLTHGDEYCTDDSAYQQFRAMVRNPQWQAQFLAKSIPERLAMAEQARGES
QAANQAKSMEIMDVNPAAVEAALREADVDVLVHGHTHRPARHVLSVDGRKRERWVLPDWDCDHADPPRGGWLVIDRDGLQ
CFDLVEDED
>SEQF2266_AEE67207.1 peptidyl-prolyl cis-trans isomerase B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTNPRVKLHTNQGDIIITLNAEKAPKSVENFVAYTKDGFYDGTVFHRVIDGFMIQGGGFEPGMKQKPTKAPIENEANNG
LKNDKYTLAMARTSDPHSATAQFFINVSDNDFLNFTAPTPNGWGYAVFGVVTEGTEVVDKIKNVKTGNRGFHQNVPAEDV
IIEKAEVLE
>SEQF2266_AEE67208.1 hypothetical protein BPTD_1879 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTKPRLCTALLTLAIAVSASAPVLAQSMAGGSAKNRYANQTKLDPYPPEGGWQGLANLLEAAKPGVDTRLDPTPSQITD
RIEELLNRGANEEALSLIERREAAIKGQRGADVQLMFQHARALAALGRADEAIAVYSDMTTQFPELPEPWNNLAALYASR
GELERAQDSLQMALRANPDYAAARANLGDIQLMMALRTYRQEEARGVPGMKARVEEIESLLKDKQPK
>SEQF2266_AEE67209.1 cysteinyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLHIYNTLSRTKEPFKPAHAGQVRMYVCGMTVYDYCHLGHARMLVAFDVVQRWLRASGLAVDYVRNITDIDDKIIRRAVE
TGRRIGEVTEYYIAAMHADERALGVQPPDREPRATQYVGEMLDIIGRLESKGLAYRAEDGDVNYAVRGFADYGKLSGKSL
DDLRAGERVAVGSAKRDPLDFVLWKSAKPQEPDDTKWESPYGLGRPGWHIECSAMSKTLLGLPLDIHGGGPDLKFPHHEN
EIAQTEGAFGGALANVWMHCGPLMVDADKMSKSLGNFRTIRQTIAQGPLSDTQAEYAVNPREAEMLRFFIVRNHYRSPQN
YAPDNLVDAQNALDRLYQALQNTAADGQGVDWSEEPQAQAFKAAMDDDFNSSGAVAALFELASEANRTGSARAVGQLKAL
GAVLGLLQQDPPAYFQSPTRYSAAARGQGAPAAALDAAAIEARIAERAAAKAARDFARADAIRAELRAAGIELDDKPGGL
TQWRRA
>SEQF2266_AEE67210.1 DNA-3-methyladenine glycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSADIVIVKPEYWDDAVAHLMRRDRILKRIIPQHGETWLTSRGSPFVTLARAIIGQQISVKAADALWQRFLETVGKRPT
PATVLRAGVPALRAAGLSQRKAEYLVDLATHFGQRLVHPEKWAAMDDEAVIAELVAIRGIGRWTAEMFLIFNLQRPDVLP
LDDLGLLKAISLHYFSGEPVSRFEAREVSLAWQPWRTVATWYLWRSLEPAAVQY
>SEQF2266_AEE67211.1 acetyl-CoA carboxylase carboxyltransferase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRNTFLEFEQPLAELENKIEQLRYVQADSAVDISDEIGRLQQKSQNLAKEIYGKLTPWQTALVARHPQRPYTLDYVREIF
TDFHELHGDRMYADDQSIVGGLARFNGSACMVIGHQKGRDTKERAARNFGMPRPEGYRKALRLMRLAEKFRLPIFTFIDT
PGAYPGIGAEERGQSEAIGRNLYAMAELKVPVICTVIGEGGSGGALAIAVGNAVLMLQYATYSVISPEGCASILWRSADK
APEAAEALAITAPRLKDLGLVDRVVNEPVGGAHRDPRVMARLLRRALGDALRQLQGLGPEQLVDQRLQRLMSYGRFQEVR
A
>SEQF2266_AEE67212.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67213.1 hypothetical protein BPTD_1884 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAALRALDPAPARLAVAVSGGADSAMLAVAAAAALPPGCTLRLFHVHHGLQAAADQWAAQVRGLGALLGVPVDEARVTV
PPGQGLGMEAAARLARYQALAGLARQHGVRHILLAHHRNDQAETVLLRLLRGTGLQGMAAMAPFSERDGVAYLRPWLDVD
HAAILALAGAVRAQCGWQAVQDPTNTDPRYARAAVRTQLAPALDARWPGWQAIVARHARQMAEAAEIVAEVAQADFATLE
PADAGRSFSLAAWRGLSAARQAQALRHWLASQDAPMPTEARLAELQRQLRQLHALGHDRHLRWQHAGRVVRCERGRVWID
D
>SEQF2266_AEE67214.1 aspartate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLIVQKYGGTSMGSVERIKNVARRVAKWHAAGHKVVVVPSAMAGETNRLLSLAREISPQPDGRELDMIAATGEQASSGM
LAIALQAEGVPARSYAGWQVPVRTDSSYTKARIKSIDDKRVLADLDAGRVVIVTGFQGVDDDGHITTLGRGGSDTSAVAV
AAAIKADECLIFTDVDGVYTTDPRVVPEARRMAVVSFEEMLEMASLGSKVLQIRSVEFAGKYHVPTRVLSSLTDPLIPLE
EEMRSGTLITFEEDEKMEAAVVSGIAFSRDEAKITLLAVPDKPGIAYSILGPVAAANIDVDMIVQNQSVAGTTDFSFTVN
RNEYQRTLDLLKREVIPAVSARELVTDEKVAKVSIVGIGMRSHVGVASLMFQTLSQEGINIQMISTSEIKTSVIIDDKYM
ELAVRSLHKAFGLDQVPGDQV
>SEQF2266_AEE67215.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE67216.1 hypothetical protein BPTD_1887 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQQHEPGIAVVVGPDEGDSFWQPVPANGFVRTLLNRANTGASVDFSAGTQTVAPGCHVREHFHDDREEVIFITEGTGTA
LIDGVEHPLAPGACLFLGKSRKHSFLNAGPEPLSFFWILMPGGLDDFFRQIGRVRQPGEPAPQSFARPADIDRIEANTVF
GWTAKS
>SEQF2266_AEE67217.1 hypothetical protein BPTD_1888 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFIEERDYRIKPGKAGLFVATYEAHGLALQKKYLGRFLGYFMSEIGELNHVVAWWAYDSLDERDAARSRMLADPQWQAYL
ERVTDLIDLQQTRILKPVSFSPIQ
>SEQF2266_AEE67218.1 3-hydroxyacyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNHVAVIGGGIIGASWAIVFARRGLEVTIVERDAACLAGLPARLAGMIERSASLLRAGEQPGDVAARIGATDALAAAVGR
ADYVQEAVSENLAFKRTLFAELDALAPGHALLASSTSTYGASQFTEALAGRARCLVAHPMTPPHLSPVVEMAASAWTDPQ
ALAGAETFMRSLGQHPVRIRKEIPGFVLNRLQGALLMEMFRVIADDVISPADADALISQGLGLRWATLGPLEGVDLNAPG
GIADYLQRYGHIFNDMAAGQGLPAPVDAELISALDGAMRAALPLERLEAKRGWRDRAIAGVRVALHDYTGEKP
>SEQF2266_AEE67219.1 hypothetical protein BPTD_1890 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLIRAVDGLNRLACWLMAGLMLGMTLCTLWQVSVRFLLTGLGWNVAAPWSEEVSRYLMIWIIFLGAGVACRKAQLIALE
LVVTLLPAPLGRALRFAALLGCLVFFTLMIYLGLEFMEFGAIETSPVLSMPKTWIYLAMPVGFGLMFLNTATLIAECLLQ
GIDIRHASQQEAQE
>SEQF2266_AEE67220.1 hypothetical protein BPTD_1891 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSAVVLLLLLFAASIPVALSLGIAPLPALLARDVPLLAVPQTMFESMDSFALMAVPFFVLAGRLMQTGGIAGRLMDLGL
ALIGWVKGGLGGAAVLTTMFFSTICGSSSATTAAIGSVMIPEMERRGYPRPFAASVVASSGELGVILPPSVPMIIYAMLT
GTSVAQMFVAGILPGLLIGLSLIITILIMSRLGDYGGSQRVSVGEWALNVWRALRRASLSLLMPVIILGGIYGGLFTATE
AAVVAVAYTFVVSVFIYREIKWKDLPEIFWSSAVTSGIVLLIVGFASVFAYVLSLYQAPQQVAALLLGVSDNPLVFLLLV
NIALLVVGLFMETFAAILILAPVLAPVAVSLGIDPVHFGLIVIVNLAVGMVTPPVGVNLFLVCGIARVSMERLMRPLSVF
LGVLLLDLIIITYGPVLYARFF
>SEQF2266_AEE67221.1 hypothetical protein BPTD_1892 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNVVKSLFAALALAGASFGASAEPIQINIGHALGDTSSYQVAGLHFAELMKQKVGDKVKVTLYPSGGLGGELKLVQGART
GVVDAMIIAQASLENTVREYRVLSLPYLFTDYEEANRIMQGPVGDRLLDVLPKYNMVGLGWGAVYARSLASMKPVPDLAA
MKGLKVRVIQSPGFVEAYRALGSQPTPTAYAELFLSLQNGVVDAAELSPDQTVADGFAEVIKYYSVTAAHQLPSLFIISK
AKFDRLPEDVRKAVEEAGRESMQVAVKFQDQKLAEAFDVLKQRGVQVQYPDQAPLREAARGAWDQIAKAAPGGEQFLVEI
EAARAAK
>SEQF2266_AEE67222.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRQRMTDFTVILPDGARLAARETGAGEAVLLVSGLGGTGAFWTPVAAGLQGRRCVVFDQRGVAGSTRGDAAVDIARLAA
DAWAVLDARGIERAHLVGHSTGGCIVQEMALSAPARAASLVLGGTWGGRNAYMQSLFAMRAALLAASPALYEQAGAYLSY
PAAWLLAHPEAVPAAAAPWPAQRVAVVRERIAALLAYDRLDDLPGLDAPALVLGARDDQIVPFALQQQLARVLPGAQLRP
LEHGGHFFPIVRGADYVAALLDWFGHHSL
>SEQF2266_AEE67223.1 putative L-aspartate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQAIAEHAE
GCLTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAGAIAGLDYLQAVAGRDDAEVVYESRKPVAAWRAELPGMG
IDPDTLAESRTLFSGPAREAALRFPKNLNVAATLALAGIGMTRTRVEVVVDPQARGNQHRIQVRSPLGEMQIELVNAPSP
ANPKTSWLVAQSVLATIRRHLARFTIG
>SEQF2266_AEE67224.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQRLSGRIAIVTGAGSGIGEATARLMAREGAVVVVADKAIEVAERVAQAIVAEGGRAEARQADVGEAQSVRALVDAVAA
RWERIDVLVNNAGYGIAATVVDTDEADWSALMRVNVDGVFLGCKYVIPIMQRQGAGVIVNTASAGALVGLRQRAAYCASK
GAVAALTRAMALDHATEGIRINCVAPGTIESPYFREIYARSDDPEALRASLAARQPMNRLGQPEEVARAIVFLASDDASF
ATGSTLVLDGGLTAA
>SEQF2266_AEE67225.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKATPAQVPMKERIKEVATDMLIAHGSSGFRFQQIAQALDCTRGNIHYHYRHKHELVEDVTIEYCQRTIGHFDQIWLSDS
TLSQKIQLSMQFNEMRYLKRNPQGDTSHPWSLIARMRLESALITPAAREALARYSHELQRSVVAGVRRAVEKGELRPDTP
VEMVALPIIEMANSADPITRDAGRFDRLRQMYQAVDRLIHDAYGMAGHRPAP
>SEQF2266_AEE67226.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPLPVGLAKPKALHEPSFAQLGVFHAIMITSSVSRAARLMGMTQSAASKMLRQLEDDTGLRLFERQHQRLVPTPHAQGL
QDSVEQLYGAYGVVQRQINSLADPDTGHVNVAAIPTQATTFLPQAIKRLRERYQGITVTVEILANQPIVDRVQSGQADFG
LVHDITPSVSTLNEDLGLQHVVCVAPAGHRYAGLPHVAAHDLRNETFLSYGPQTNFGAMLETAFASAGVRMPVAVEVTSS
AALLALIRAGVGVGLVEPAAIAPFGATGFVIKPFLPALPVRSRIVRSRLRPLTRHAELLLEAYRAVVLQARPDSFQA
>SEQF2266_AEE67227.1 putative extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKMSVPQDGWLADAAELALQSPGLTSARRRQLLGMLGAAGLASLAPMRPAAAAADRIVVYNWGGDAIKNQPLVWGKPYEK
ATGTKVEFDGTGPSFGKIRTMVESRNVAWDVCDANLAAGHSLGKRGYLEPIDYSVVDRNKVRPGFSSEFGVSHFIYSFVL
TYDKKAFGDRPPRTWADFWNTKDFPGTRILPDRVLATLEAALMADGVPADASQLYPIDERRALDKIAAIKDKTIFWKTGA
ESQQLLRQGEATMGLVWHTRATVMRREPGSTIDFTWNQGILIPAGWLVPKGNPAGRKVFDFIASTQSPESQIELLRLMGN
GPANPAANALVPPELRQDNPTDEENFRQQVVANYTWHGDNQDRIYNEYVKVITG
>SEQF2266_AEE67228.1 putative ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRSLPALLVLPAAVLIGGMFLLPVLRILAISFTEPHAGLGNYAALFTEPLYLKIMATTARICAWTTLIALGLGYVLAYV
MANSSPRMRSWMIIGLLVPFWLSVLVRAFAWVLLLAREGPVNATLMALGVIDSPLALLRNETGVLIGMVHYMIPYAVLPM
LTNMLGIDRSLMAAARALGAGPVATFLRVYLPLSLPGVLAAGVLVFIFSLGFFITPALLGGGKTVMVAQYIEFGISETMN
WGISTAFAATLLVAVIMSLVLVSRVVRVPSLFGAP
>SEQF2266_AEE67229.1 putative ABC transporter, permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVRPSWWFAAAAVVAALVLAFLFLPALVVIPVSFTDRSYLSFPAESWSWQHYRQLVDSPVWRGSLLQSVAVSAVSTLAA
TLLGAAAAIGAWRLGARLGALVRLLALLPLIVPTIVGALAYYRLYIDLGLLDTFTGVVIAHVVAAMPFVFVSVGSALANF
DPRLEQAARSMGARPWQVLWRITLPGVRSGLVSGAIFAFIVSWDELVVLLFVTTRNVYLLPRAMWDGINENVDPTIAAVA
TLMIVITFIRLCAERLLAHHRQKQELS
>SEQF2266_AEE67230.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAAATTPTPLLRVRALNKRFGAFQALRGVDFELGAGEFLTLLGPSGSGKTTTLMSIAGFVAPTSGDILYQGASITGQAP
EARGFGMVFQGYALFPHMTVEQNVRFPLAIRGVGREQARRRAQQALEQVQLGSYGARYPRQLSGGQQQRVALARALVYDL
RILLLDEPLSALDKKLRADLQWELRKLNKESGASFLYVTHDQEEALSMSDRIAIFNEGGIAQIGSPTELYERPANLFVAG
FLGRSNVLAGKVRQAGADGVAVEYEGGVLEVPKPRRQYAPGEAVSLVVRPHQMRLDAAGRQGLAAKVEAISYAGNLMNYL
LRTPRGTALFAEAVAGAGAALRQDDLVSVGLDAAAVSLLEAAD
>SEQF2266_AEE67231.1 NADH-dependent flavin oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLLSPIDIAGIALRNRIAVAPMSRTQADAHGHPAAETAAYYARYARHGAGLVITEALYTAGPAARAYFNQPGLASEAQA
EHWRAAVRAVHQEGGRVIAQLQHAGKLAEPGLHARPLGLVDGAAQGLSWQTQQPNAPAHAATAEEIERIIEGFALSARLA
HYAGFDGVEIHGARGYLVNDFLSAYNVRDDEWGADRARIAEAVLRAVRQACPLPIGFNYSIYKMDEYRYQPPGGGAEIAA
LLARLCQAGADILHISSRRVLKPEPWGGLLAQLARAAAPKALMVNGGLATLQDCETVLAATQADLVSLARPFLANPDWLA
RSLAGEPLRAYEPGMEQRPLLD
>SEQF2266_AEE67232.1 putative pimeloyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTLADNAPRMAGAGDWIDAALAPRSVAIVGASDNPEKIGGRPIKYMLQHGYQGRILPINPGRDRVQGIAAWHSLDAVNV
PIDMLLVCVAGEAAVQAVRDGARLGVRVCVVISSGFAETGEPGRQAQKHMKAAAAAAGMRLLGPNTQGLANFSNGALATF
ATLLGEVAPADGPVAVISQSGAMSMVPYAHLRAEGIGVRYSVATGNECDLNVADFTEAVLRDPEVRLILLYMESLPAPAT
LARAAALARSRQVPVLALKAGVSPQGLQAAQSHTGAIATEDKALDAWFRQHGILRVPDARSLVMGAQLLLRCGHLPGNRL
AILSNSGAACVTGADAAERHGLQVPPLPAETRARIDAVLPGFASSLNPIDLTAALLSNNHLFGQVLPILASARACDALFI
TLPMSGKGYDTDQFARDAAAFTAETGLPVVVSCPLAASRRIFAQAGLATFEHDEDALAALGQLARLSGLRETALRLARPA
PHAPAAPVPRTAGLLSEADSLEQIEAIGIRTAPWRLCLDADSMGSALGSLPGPWAVKACSAQIPHKSEYGLVHLGIADEQ
RARALFPVLRQEVLGMGKSFDGVIVASMVKPRREFMIGARWDSQFGCIVIVGDGGKYVEAMPDVATLVYPFDQAHAEECL
RKLRVAALFDGVRGENPLPVQELAHAATRLGAWLHAQQGAVASVDINPLIAGPDGRLYAADALVEI
>SEQF2266_AEE67233.1 hypothetical protein BPTD_1906 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKWIASMALALCAGGAFAADYPARPITLIVPYGPGGTNDILARAIANKISPTLGQTVVVNNRPGAGGNIGAQQVATAEPD
GYTLLLASSGVFAVNKWLYRSLRYDPAQAFAPVILAGSVPNVLIVDTEVPAKTLPELVKYAKSAQPSLNYASMGTGTSGH
LCAELFKAQAGIEAEHIAYPGSAAALTALLGHQVQLMCDNLPTALPQIKAGRARALAVSSAERAPLLPDTPTVAESGFPG
FDATAWFGIAAPAGTPAPIVERLNKEINAALQAPDVARILGEQGVSFRPNTPAQFSQFISAESAKWRDVIERTGSRAD
>SEQF2266_AEE67234.1 hypothetical protein BPTD_1907 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHSSLQAVLPPGANPNSTFSPAVRAGGFLYISGMTALNEQREIVGVGDIAAQARYIYQKIAAILAQAGGNLSQVVETVDY
VTTFDGYGQTADVRREVFGAGPFPAATGVLVSGLVRPAALIEIRAVAYLG
>SEQF2266_AEE67235.1 hypothetical protein BPTD_1908 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPPRQLAAADLAVGQVVAQREIRLDAQAFAQFAALTGDAHPIHYDAGYAQRQGLRAPIAHGLLLVAISALGATPLSAQL
HDAMVAMVDVEAVFMRPVYVDETVQCVYRVAQIEHVAKGRSKTTIEVSIHTTDAPPDAARQAHCVVHLTFLLKTHLQG
>SEQF2266_AEE67236.1 hypothetical protein BPTD_1909 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRTLDITQAMIDGYGRINGDNDIIHYDHDYAVQRGFRGTLLHGPHMTALAADLGARRYASDWLYRGKLHTKWIGPVCPG
DTFVAALNEQGEIEAVSGGKTVMVGSASLAD
>SEQF2266_AEE67237.1 hypothetical protein BPTD_1910 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRPSDIKPREGDTPGTPYAAFVEGAALGPVSFDITPAIVQEYFEASQADPALYRVDVRQAAAPNVILPYMTVPVYQTYP
PIQGIVMAELEMSWHRPIWADETTRVTATGTILRKFEKRGRRYVQWEGRFRGADGQPIATLLNTFHVPE
>SEQF2266_AEE67238.1 ArsR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAINTEDILKALAHPARRNILAWLKEPQRHFPQQEHPLELGVCAGQFERCGLSQSTVSTHLAILQRAGLIHSRRVGQWVF
YQRNEACIAEFLQTMQAEL
>SEQF2266_AEE67239.1 N-ethylmaleimide reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTLFQPLNAGKLRLANRIVMAPLTRNRSPNAVPPPLTATYYAQRASAGLIITEATAISHQGQGYADVPGLYAPEQLAGW
RRVTDAVHAAGGTIVVQLWHVGRISHTTLQPGQGAPVAPSAIRAQARTYLVDAQGKGQFADTSEPRALALDELPGIVEDY
RRAARAAIDHGFDGVELHAANGYLLDQFLRSGSNHRDDAYGGSIENRARLLLRALDAVCAEVGADRVGIRLSPVTPANDA
HDDQPQPLFEYVLRELARRGLAYVHVIEGATGGDRAYQQGPAPFDYAALKAAYRAAGGAGAWMVNNGYDISLAEQKLSSG
QADLVAFGKPFIANPDLVARLRQGAALNEGDRDTFYGGGERGYTDYPALA
>SEQF2266_AEE67240.1 hypothetical protein BPTD_1913 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHQHGVADGLLYGCWYRIVRPLLVILTWVAFSLYIHHSLVTVGGTAAQIAELLVYITVVATMAAALTAWMIVCRFHGWIR
ARDNEEVGVGLDPEYALPPRWPLPEGANRLLVDHDEAGAIVQVSAWYVPAAIEPVVAAAMASAVMPEAAPLSEPAPVAAA
LPDEADELAAWSGPPMQRQPDGRIEPTLHDGRALTL
>SEQF2266_AEE67241.1 N-glycosyltransferase PgaC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDSVKSVLSSFVFYYPFFMSYFWIVGGLLHFFLFEQGRKHRATLLPRVPRVAIVVPCYNEGENVAEVIAHLDRMHYPNY
RIIAVNDGSRDNTGALLNELAEQYPRLLVVHQSRNEGKAIGLNTAAQLSDAEFLLCIDGDSLPHPDSITYMLTHFLHAGH
VGAVTGNPRIRNRSTVLGRMQVGEFSSIVGLIKRTQQLYGKLMTVSGVMTMFRKQALHQVGYWSPDMQTEDIDISWKLQL
AGWTLRYEPRALTWILMPETFRGLFKQRYRWARGGIETALKYAPRMLNPRQILMWPIFLEFSLSVLWAYAMLFLICMAVL
GQFVALPPAWQFEIFPRWHGTLLFLTCLAQLFAGCIVDRAYDYRIFRYFADAVWYPIAFWIIGMITTVFALPRVLFRRAQ
SRARWVSPDRGIKHESVDH
>SEQF2266_AEE67242.1 putative hemin storage protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAMHRTLLKWFACCALGLLMLPARAYKVDMLPPPDPDDGLTFRVLCMHDVRDNLRASFADMPDQFAIETRTLTDLFEWI
RVKGFNLISMQQIIDSRAGVRPLPPRPILLTFDDGYASTYTKVFPLLKKFNYPAVVAVVTSWTDAPAGTKIRLSPKIEVP
HDFFMTWAQLREMAQSGLVELASHSHNLHRGVLANPQGNEQPAASSRQYLPASGRYENDAEYRARVRQDLKTSADLIREH
TGVTIRSIVWPYGAHNRDTDQVAAEVGLNIGLTLQPGPNTPDVSLTQIRRSLVDYEVNVATVARAMREPVSYHGQVRPIE
RIVQVDLDYIYDPDPEQQNRNLGQLIDRMKDLAPSAVYLQAFAYPKGDGDITEVYFPNRHLPMRADLFNRVAWQLKTRAG
VMVYAWLPVLTFSVPPGNPAYGKVVQSTTRKPGERGLGSPTRLSPFHPDAHRVISEIYEDLAKAAHFDGLLFHDDAVLDD
TEDSSPEALATYQGWGLPPDIAAIRADPKLAQQWSKGKIRYLIDFTMHLRHIVSGYQNDRDMVVARNLYAQPVLDPVSEA
WYGQSLPEFLKSYDFVALMAMPNMEGAARPEQWMRQLVAAVARQKGLDRTIFELQARDWRVGKPIDTEILRKQMVQLRSL
GAINYGYYPDDFIANHPDAEVLRDVMSLKSTLEKRRLTKAQELSRQTTLYGSASQAEPTQR
>SEQF2266_AEE67243.1 putative hemin storage protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNDQTRRTRPASVRGLRRTRLLVAGLAFVGAAAAAAPSVRDQVQEASRSGAANLALDLATEHRALFTPLEYAQLQHAAI
AQRLRWSRAETWNLTGPERFATLDAALADGWQLLDSLPLAPEYASLRTAVISDMIYGLGLRGRYADAIKLYEGLRATNTP
VHPYVLVSAGNAYAYEERYDEAIVCYEEALAKAGPGDIDRVPTQESLFFAYMDRGRYEDAEQLLQRIEKTSPQYVENAPV
AERPNEDYATAQRLRAQYLMYSGETEAGTLAIDALQHDAPFSSGLRNAAASARLGDARPREAKAAFTTALAERPDDIQAM
TGLARASMALREYPEAEAIVTTLSERFPESSSVRNLQRDYEVYQSPLLTMDFGGDIGHGGDNSNNDNSTIANREWSLNTM
LYTSPISHNYRLFFHQFTGYADLGDGHKSRVRNGAGLEYRRGSIEASTELHQSTGPSGRFGASANVAWLPSDGWRLAANF
DSDSNDLPWKAYRAGIHGWSSGVSARYQPTERTYYDVAYQLQHYSDSNTRQTIGATWFQNLWTVPRHSVSTWTSVAYSNN
SKTDTECFSPDHDLTAQVTAMYEWRPWRDGQYAFRQRVYATGGVYNQAEHGNSALWQLRLEQVWDLPRQTSITYGVGYGR
HSYDGDPENRTLFYLTLNIPF
>SEQF2266_AEE67244.1 hypothetical protein BPTD_1917 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRAAKWWGPAATWTLAALLVLLVGHGVVPEAARVSDAPLLHAMAGHAYLLNWAAGLMALIGWGDSLVLYRRTRRRAV
>SEQF2266_AEE67245.1 MarR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPASQDKPDVPPGPYHFSEQVGHLLRRAYQRHVAIFQQTIPDSKLTAAQFVVLCALRDQGACSLVDVVKATAIDQATVRG
VIERLKARKLLAVSHDPADRRKVLVTLTPDGRALVEEMVPFAEQITQSTFGGLNPAERVAIVYLLRKMSDADDLVGRQSE
S
>SEQF2266_AEE67246.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67247.1 branched-chain amino acid-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNGRNRYARLLGATCLTLLGASAWAQDTIKIGEINSYKSQPAFLEPYKKGMQLALDEVNDAGGIAGKKLELVIRDDNANP
GEAVRAAEELISRERVDMLTGSFLSHIGLALTDFAKQKKVFFLASEPLTDKIVWQDGNRYTYRLRTSTYMQVAMLVPEAL
KLKKKRWAIVYPNYEYGQSAVATFKTLMKAGQPDIEFVSEQAAPLGKVDAGSVVQALADSKPDAIFNVLFAADVTKFVRE
GTTRGLFKDRPVVSVLTGEPEYLDTFRDETPAGWIVTGYPWQFIETPEHQAFLKAYQAKFKDYPRLGSVVGYSAIKSLAE
GIKRAGGKTDTESMIKAFAGLKLTIPFGPIEYRTLDNQSTMGAYVGKLASKDGKGVMVDFRYVDGAAAQPSDEEVRKLRK
AD
>SEQF2266_AEE67248.1 putative permease component of branched-chain amino acid transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLTGFLAQLLNGLAEASSLFLVAAGLSLIFGVTRIVNFAHGSLYMLGVYVAYSIVERVGGTALGFWFGLVAASLAVGVV
GAAIEVVLLRRIYRAPELFQLLATFALVLVINDAALWIWGAEDLLGRRAPGLTGAIDLLGRRYPVYNLVLIVVGPVVLGL
LWLLLTRTRWGTLVRAATQDREMLGALGVNQAWLFTGVFALGAMLAGLGGALQLPREPASLSLDLRTIGDAFVIVVVGGM
GSIPGAYVAALIIAEIKALCIGLGTVTLLGLSISFSKLTLVVEFAFMALVLVFRPWGLFGRPQGASRNSAPIEAPLRPAA
PRLRILWGVLLASLAVLPLLAQWLPYAVVLTQDILIAVLFAVSLHFMMGPGGMHSFGHAAYFGLGAYGAALLLKAASLPM
EAALAFAPLVGALGALVFGWFCVRLSGVYLAMLTLAFSQIVWSVVFQWDDFTGGSNGMIGVWPAEWLSGTAYYYLALAVV
AAAVLGLRRVLFSPFGYAMRAGRDSSLRADAIGIDVKRVQWAAFVVAGAFGGLAGALYAFSKGSISPDTMAVSKSVDGLV
MVLLGGIQTLIGPVVGATAFNVLQDYIMRATEYWRALFGGVILLLVLVFPQGIAGFCRQAGQWWSARAGKDRPPRKGGAF
IGGPREKQA
>SEQF2266_AEE67249.1 putative ATP-binding component of branched-chain amino acid ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLLQVRNLSKAFGGVRAVDDISFDLAAGELLALIGPNGAGKSTTFNMVGGQLPATTGSVRLDGHELVGMRPRDIWRLGV
GRTFQIAATFASLTVVENVQMALLSHHRRIFSFGSLAARQYREPALALLEQVGMRDQAERPCSELAYGDVKRVELAMGLA
NDPKLLLMDEPTAGMAPQERNALMALTKRLVVDRGMAVLFTEHSMDVVFAYADRMIVLARDRLIAEGGAQEIRNHPKVQE
VYFGTGKTFEKHSAGAAA
>SEQF2266_AEE67250.1 putative ATP-binding component of ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTVAEPTRAAAATQAPALLRVAGLNAWYGAAHILFDVDLEVRRGEVVALMGRNGAGKSTTFKAVMGLLAKRRGAVEFMG
RDIAGLQPFEIARLGLGFVPEDRRVFTDLTVTENLEVGRQPARRWPDGSAAPNWQPGALYELFPNLGAMQDCPGGQMSGG
EQQMLTVARTLMGNPFLVLLDEPSEGVAPVIVEQMAGMILALKAQGASILLSEQNVHFAELVSDRVYVLEKGQIRYSGSM
AELADNEEVRRAYLTV
>SEQF2266_AEE67251.1 oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRRIEVCRIAMLAATRDFTLEVNASRHTVTADPDTPLLYILRNDLCLNGPKFGCGLGECGACAVLIDGVAARACTIPVR
GAAGHAITTLEGLGTPQAPGPVQQAFIDEQAAQCGYCLNGMIIATQALLLRNAAPTDEEIRHELQYHLCRCGTHIEIMAA
VRRAARLWAARQA
>SEQF2266_AEE67252.1 putative monooxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQGKPRIAVIGAGLGGTAGAALMARAGFNVRLYEQAPAFSLLGAGIHLGPNVMKIMRRIGIEDELNRQGSHPDYWYSRDW
QTGAELARIPLGDYAVSHYGATYLTVHRGDFHALMTAALPAGLLQFNKRLTRVDEDDDVVRLHFADGSVEEAEIVIGADG
VNSRLREHLLGAELPKYTGYVAHRAVFPTPLDSGSLPFDMCVKWWSDDRHMMVYFVTGKRDEIYYVTGVPEQQWDMGKSW
VPSSKEEMRAAFAGWHPTVQALIEATPEVSKWPLLERDPLPLWSRGRIVLLGDACHPMKPHMAQGAAMAIEDAAMLTRIF
EQTGLQDHAAAFRLYEDNRAERASRVQRVSHDNTWLRTNENPDWCFGYDVYAEPLVEGRRAAA
>SEQF2266_AEE67253.1 maleate cis-trans isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQKTYRIGQIVPSSNTTMETEIPAMLLARQQIRGERFTFHSSRMRMKKVVKEELAAMDAESDRCAVELSDARVDVLGYAC
LVAIMAMGRGYHRQSQARLTAHTAANGGEAPVITSAGALVDALKVMGARKIAVVAPYMKPLTELVVDYIGNEGYEVVDYR
ALEIADNLEVGRHDAGRLPEIVAGLDYREADVIVLSACVQMPSLGAIAKVEAQTGKPVVTAAVATTYAMLKALGLEAVVP
GAGALLSGAY
>SEQF2266_AEE67254.1 hypothetical protein BPTD_1929 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVSDYEMIRAWTQVLRLSRLQAGQTVTVLTSAATHPQTLGTALVAAQSLGAVVNRLDLPPVNGEKALSRDALAYLGTTP
LTGNKAAIAMLKASDLVLDLMTLLFSPEQHEILQGGTRILLAVEPPEVLARLVPTEGDRQRVKAAAARIAGAREMTVESE
AGTRLRCGLGEFPAISEYGYVDEPGRWDHWPSGFALTWPDEGSANGTIVIDRGDILLPQKSYVSEPIVLTVENGYATRIE
GGLDAEMLREYVATFKDPQAYAISHIGWGLQPRASWTTLGLYDREATIGMDARAYEGNFLFSLGPNNEAGGSRTTACHID
IPLRRCTVRLDGREVVREGKVLD
>SEQF2266_AEE67255.1 putative isochorismatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNDLGSYERQGFGAALPLKAPYGLLIVDFVNGFADPAQFGGGNIAAAIETTRTVLAAARERGWAVAHSRIVYADDDADG
NIFSIKVPGMLTLKEHAPASAIVPQLAPQAGEYVVRKSTPSAFYGTMLAAWLAQRGVQTLLVAGATTSGCVRASVVDAMS
AGFRPLVLSDCVGDRALGPHEANLFDMRQKYAAVMTHDEALAKTK
>SEQF2266_AEE67256.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE67257.1 putative flavocytochrome [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRLRTIFILLVAALSVLWLSQNPPGAWGEGFWVMRKPLIYYTGILALGMMSLGVILAARPARFEGALGGLDKFYRLHKW
LGLGGVALALTHWLLKIVPPWMAAQGWTVRPPRVPAPAGQAALYDPFQAWHGVAKSLGEWGLYALLLLAALALYKRFPYR
HFFRTHRLMPALYLVFVFHAVVLMAPAYWRGPIGPVMAVVMAAGGAGALLSLLGLIGRPRQAAGRIARLERFADNAVMQV
DVQLETRWPGHKAGQFAFVAFDRAEGAHPFTISSAWRDDGLLRFSIKGLGDYTRSLPARLRVGDGVTVEGPYGRFDFRAN
GRPQILVAGGIGITPFLARLQDMAAARSDGAPAHEVDLVYSTNAPDPDFIGELRALAERARVGLHVLVTQRDGKLSAERL
VDMLPRAAQSEVWFCGPAGFGQALREGLAARGMPPACFHQELFEMR
>SEQF2266_AEE67258.1 putative ferrisiderophore receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHTRTPQRQRPVAPRLLHLSLAASLAAGAAQAQTATEATTLPTVQVTGRGETATGPVDGYAATRSATATKTDTPLSETPQ
AVTVIPREQIIDQGAQNVQDTMNYAAGVRPNAYGVDNRGDYVRVRGVEPVQYLDGLKQFFNYNNPRTEVYGLERVEVLRG
PASMLYGQGSTGGVVNLVSKRPQPEAMREIGVTVGNHNRKEIQADLTGPLTEDGTWLYQVVALGRDSDTQVQYTKDDRMM
LAPSLTWQPSAATSLTLQAYWQKDKSGTTQAFLPWSGTVSGNPNGRIPTRRFTSEPGFDRYDTEQFSVGWQFEHKFNDNW
KVRQNLRHTSSKVDYSTLYPAVYGNPDNPFIDADQRVVNRYLYIKNPRMRSLLADQNLEGKVNWGRAEHTLLMGVDYSRY
RETGETGSGFGAPLDLYQPVYGTLPDYAMSDVPKNKQQQIGVYLQDQIKFDRNWIVVAGLRHDRVANSVEGADKETDNAT
TKRLGLMYAADNGWSPYLSYSESFTPIAGTDNSGNRWVPMRGKQWEAGLKYMPQDTGYEATLAAYDLRERNRQTNDPSDP
TNQVQTGKTKTRGIELEFRGRVTPQMDVIANYNYTDIDPQLEGLPKHTFSLWSKYRFSVGDVHGFAAGAGVRYLNAFRDG
SAPETGSVALFDAMLSYDTGSWRYALNVANIADKTYEVVCLRRGDCFYGQRRTVTLSAMYRF
>SEQF2266_AEE67259.1 hypothetical protein BPTD_1936 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFKSMLAAVLALGMSGPVAQAAAPLDGPLTIVVGYAPGGSSDRIARLVAERLKDRVGVPVIVENKTGAGGRIAAQALRQA
SAQQNVLMLANPAVMVVAPLVYAQPGYDAQRDFQPLSLASRYKFALTVPAGSPLRTLADLRQWIAAHPKQLTVGVPATGS
LPHFFALMLGREVGEDVEVVGYRGSGPLITELIGGILGQGIDTLDTLLPQHQAGKLRILATSGQTRDAQLPDVPTFREAG
VDLAADGWNAFFAPAAMPADKVERLGRDIAAVMSEPAMQQAVRAVNLEPVAQDAAQTAASLQAYRDQWEPVVRQSGFTAT
Q
>SEQF2266_AEE67260.1 LuxR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMTTVLIEDYALLRIAIQHVLEHGRGAGQVRALASAELEAVASSVERPPELAILGCSGVSEHDQLMLTRVIATLAPRNM
LLLYLELDLAVLTAAARAGVAGYVAKSLSPDALGAAISLVMAGGQCYPLPVQASATPVRGAMQLTQRQEQILRLMVQGKT
MREISREVGTSVATVKSHARTLYWKLNARNQAAAAYAAVSLGLVPGLREDKDTGPADPPA
>SEQF2266_AEE67261.1 phosphoglucomutase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTPTMHGSFDWDGSRTGAGVFGPYDIRGRTGEEIDAGFAHALGLTLGRRAVATHAGAVVVGRDATLSSVALAAALQAGI
RAAGTHVIDIGRVTTPMMYYATRLTETGAGVAVTGRRDGQAHSSFKIMMHGAALYGAGLGELREAMIEADGAVDAAESPG
ARRQLAVLPCYQARLLSDIRLRRPLKVALDCGHGVTSLYAPDLLRELGCEVTALFADGDPGPADHPANPGDPRNLQDLIY
CLRYSDCEVGLAFDGDGDRLAVVSKSGEIIWADRLLVLLARDVLARRPGASVIYDVKCGRLAPRGIEQAGGEPLIWKSGP
GQIKARMQETGALLAGEMSGRLYFKDRWYGFDDAIYAAARVLELLSGVADATALLTQAPASFTAPETRVALPEADLQAIL
AAMQVRGGFPGARRITYLDGVRVDYDDGFGLVRQACGAAVLALRFEGDTAAALARIQAEFRRELARIASHLSITF
>SEQF2266_AEE67262.1 putative glucose-6-phosphate isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPENAQPHAVIPAADLQLSAQSPQWRVFAAAAAGAPLVARPLRVIEAAGIYVDLSMQRHSSALAQAGLALLQARDVLGAR
AALFAPGAQDAAHGRYPVLRAGYGAHPEEQCDIEVEIEYARMLEFVRELDRGGAYPAVLYLGGGAGQWALRLALQAFGGP
AQRRQLRLVSGGDAAALHEALAGLDPRRTLVVAASRGFEPSETLDNARAAIDWLRRAGIDDVSAHLVAVTGNESAARALG
VAAARVFRLPSWLQPRHELWSVGALPVALALGVDMLKALRSGAAAMDQHFLQAASAVNAPMQMALAAVANTSAMHWPTHA
LAVYSARLAALPACVQQLEMTLAGRAPASLPAYPVVWSPAGAPGPGAFFEWLHRAPAGAPVDFIAGLDEYPASPPAHRAL
LANCLAQREALLRGLPAGPGQPAAGGGRPSTLVVLRQVDPRAVGALLALYEHKAFVQAALWGAALGGADEAQACQRLAQD
IARQLAVPPEAGPVDWGHDSSTAFWIDRYREQGGAGAAAGRTA
>SEQF2266_AEE67263.1 serine acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGSSHYPVANWNLDGIVSGLRGARQEWRGPRGRLREESESGVREFPSQESLRDIMRQLFGALFPMRLGPIDLREEVEDF
YVGHTIGAALDALLHQVCLELQHLGRDDPQPYGQVLERAVDIVRRFGAELPAVRKALDLDVTAAYQGDPAARSVDEVLLC
YPGVTAMIHHRLANVLYRLGAPMLARIVAEIAHSDTGIDIHPGATIGRSFFIDHGTGVVIGETAIIGERVRLYQMVTLGA
KRFPPGENGELKKGLPRHPIIEDDVVIYAGATILGRITIGQGSTIGGNVWLTHSVPPNSTVTQAGVINDMPDCGLGG
>SEQF2266_AEE67264.1 hypothetical protein BPTD_1943 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSDSHPVNPAPPLWPIILAAGIVLGLSLGQRHSVGLYQLPLVQSFGLTRETFSFAIAIQNIVWGLAQPFSGYLADRYGT
ARVVAGGALLYVAGLLLTTVSDGRLSLTLSAGVLVGLGLAGTAWTVNGVVGRRAPAARRSAALGAVSAMGALGQFVMLPL
GMYLIGAFGWQGALGLCAAVLACMAPLAWLLREAPRQPSAAPAAPATQSGGGVRAALGNRDLWLLWLGFMACGFHLAFIA
THLPAYLADKGIGGGTAALALGLVGLFNIAGTFFFGLMGERYPKKYVLAFLYLVRTAVITVYFLAPVSQFSTLLFASAMG
FLWLGTAPVTTGLVAQLFGLGTLSTLFGVVFLGHQVGSFLGVWLGGVIFDLSGSYDAVWLLSIAIGLFSAAMHLPVREPA
RRLAAAAP
>SEQF2266_AEE67265.1 NAD-dependent deacetylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSRMSDLQALRGFLGGSERLFVLTGAGCSTASGIPDYRDGQGQWKRKPPIDFQAFMGGQPARARYWARSMVGWRHFGQA
RPNAAHHALARLAQRGQVDLLVTQNVDRLHQAAGGREVLDLHGRLDEVRCMQCDWRGPRGPWQHTLELANPQWAALQAGA
APDGNADLEGQDFSRFVVPSCPRCGGIVKPDVVFFGETVPRERVQRAYAALEHADAVLVVGSSLMLYSGYRFVQAAARAG
LPIAAINLGRTRADDMLALKVSRPCDEVLAEVVP
>SEQF2266_AEE67266.1 putative inositol monophosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRTFSRDETRRIAALLAEAARSEVLPRFRHLTEDAVRGKSSPRDLVTIADEEAERHIAARLGKLYPGAVLIGEEASARN
PALLNMLVDADLAFLIDPIDGTRNYVAGLPLFGMMVAVCHRGDVLAGVIYDPIGHDAALAVRGEGAWINYEDGTQQALHV
AGAAPANEMDGMISTSNLPDGLREQVTANQARLGSTASLRCAAHEYRLAASGHCHVLLYNKLTPWDHAAGWLLHREAGGY
SAHFDGSPYKPTHRSGGLLYAPDGGTWHAAHQALLGDAVPLAV
>SEQF2266_AEE67267.1 succinate-semialdehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQLTQPLSRAELLRDACYIDGKWVGAGNGPSIPVDNPSTGKTIISVPKLGRKEAEQAIDAAEAALPAWSARTGKERAAI
LLKWAQLMMENQQDLAVIMTSEQGKPVPEAAGEIAYAASFLEWFAEEAKRIDGDILQSPKGGQRLMVLKQPIGVTAAITP
WNFPAAMITRKVGPALAAGCTMVVKPAQQTPLTALALAVLAVLAGVPAGVFQVVTGSSREIGAALCESEVVRKLSFTGST
EVGRTLMEQCAPTIKKLSLELGGNAPFIVFDDADLDRAIDGILASKYRNAGQTCVCANRIYVQAGVYEEVAKRLVEKVNA
MKVGDGFEQGVTQGPLIDTAAVAKVQEHIADATAHGAKVIAGGEPHALGGSFFQPTVVRDVTQSMRFAVEETFGPVAPLF
KFDSEDEVIGMANNTIFGLAAYFYTRDYARIWRVSEALEYGIVGINTGIISNEVGPFGGVKQSGLGREGSKYGIEDYLEL
KYLCVDLGA
>SEQF2266_AEE67268.1 4-aminobutyrate aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNRDLNTRRTLATPRGVGVMCDFYAVRAENSTLWDAEGKEYIDFAGGIAVLNTGHRHPKVKAAIAAQLDNFTHTAYQIV
PYEGYVSLAERINAVAPIEGLKKTAFFTTGVEAVENAVKIARAYTGRSGVVAFSGAFHGRTMMGMALTGKVAPYKLAFGP
MPGDVFHVPFPNATQAISVADSLKALDLLFKVDIDPKRVAAIIIEPVQGEGGFNVTPPELMQALRKVCDEHGILLIADEV
QTGFARTGKLFAMQHHSVQADLITMAKSLGGGMPISGVVGRAEVMDGPAAGGLGGTYAGNPLAVAAAHAVLDVIAEEKLC
ERAVELGKRLMDRLEGLRAKCPAIADVRGLGSMVALELNDPATGKPDAEAVKRIQQQAIERGLILLSCGVYGNVLRFLYP
LTIPDDQFARALDILAEIIAA
>SEQF2266_AEE67269.1 hypothetical protein BPTD_1949 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNILIGTASWTDPTLLACGRFYPAAARTPQARLQYYATRFGMAEIDASFYALPDPHTAYLWAQRTPPGFVFNIKAFRLFT
GHQTPRAALPADLRREVPGEGDAVFDDQVPGAVRDELWRRYVQALEPLRQAGKLGAVHCQFAPWVRREARGVARVRDCAA
RLRDAGGLVMAAEMRHASWFDSAAASNWTLALERELELVHTVVDSPQGFANSVPPVWARTHPELALVRLHGRNAGAWNNR
AAASSSRFQYEYSPQELAELAERVRRLAERARQTHAVFNTNYEDQGMRNAAGLAAALAP
>SEQF2266_AEE67270.1 ATP-dependent DNA helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEPVSRAPAPADDPLAELNPAQREAAAYGVDAPASQALLVIAGAGSGKTNTLAHRVAHLILHGADPQRMLLLTFSRRAA
QEMERRVGGVLQRVMGLRAGHAAPALPWAGTFHSVGARLLRDCAPRIGLSEAFTVHDRGDAEDLMGIVRHELGLSATHNR
FPLKGTCLAIYSRVVNSQAPLAEVLRQAFPWCEAWEAELKRLFQAYVLAKQEQNVLDYDDLLLYWAEMMRDAGLAADVGA
RFDHILVDEYQDTNRLQAAILLAMKPDGGGLTVVGDDAQSIYSFRAASVRNILDFPQQFPGGAKVVTLERNYRSTQPILD
ASNAVIGLAAERYAKALWTDRASSQRPELVSVSDEAGQARWVADQVLAQREGGATLKSQAALFRASSHSAALELELTRRN
IPFVKFGGLRFLEAAHVKDMLSVLRWAENPRSRLAGFRVAQLVPGIGPATAGKLMDAMAQAADPLAAMREFQPGAAARQQ
WSEFVATYATLREARRPWPADVDAALQWYGPQLERIFDDARVRRADLEQLARLAGGYPTRERFLTELTLDPPDATSDESG
PPLRDEDYMILSTIHSAKGQEWKSVYILNAVDGCMPSDMATGTAEEIEEERRLLYVAMTRARERLQVVVPQRFYVHQQAG
LGDRHVYGSRTRFISEAMLPLFEHLPKPPELPFDRARPIEPAAPRIDVVSRVRGLFS
>SEQF2266_AEE67271.1 putative nuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRNKLQPRGGRRGLAGLLSALLLAALAALANWLWPQDHPQAPPARQTPAAGAGGVPAGSYALTGPIVNVADGDTVTLRA
PGGQRRIRMDSIDAPEEGHGNEQPGQPFAQASRQHLAGLVAGKTLTAQCYERDQFDRDVCALILPDGRSANRAQVEAGYA
WAYTARRGDYLRDPAMPGLQRQAREAGRGLWAQSGAIEPWKWRYDCWRQRRC
>SEQF2266_AEE67272.1 putative extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGMSRLLRIAALLLLGAMAGCSRESPINSPYPAGAMADNALYTAFVKRSPKYLDPASSYSTDETPYTYNIYEPLYGYHY
LKRPYELVPRAAAAIDAPRYLDAQGRELPADAPGAQIAESVYDIRLRPGIRFQPHPAFARRADGGYQYFPLAEDELADKF
YIPDFPATGSRELVADDYVYALRRLASPRVVSPIYSLMADHIVGMKDYGDRLRARDQALRRDLPGGARTLPWLDLREADG
FAGVQALDAHTLRIRVIGKYPQFKYWLAMTFTAPVPWEADRFYSQPGMAEHDLSLNTWPVGTGPYMLVESRQNWRHVLAR
NPNFRGAPYPCEGEPQDRADGLLADCGKPTPFIDRVVFSVEKEAVPLTGKFMQGYYDVPQVERGEYGVSMLVAAGDSPDK
AALYRYHGIRLPTTVETSNWYMGFNWLDPVVGKGDTPAQQERNRKLRQAISIAFDWEEYVAVFENSQAQVAYGPVPPGVL
GYKPPPEGYNPVVYDLADGKPVRKPLDTARRLLAEAGYPDGRNALTGAPLVLYYDAMTGAGASPMFDWMRRQLAKLGIQM
DVRSTDYNRFQDKMRRGTAQLFLWGWNADYPDAENFLFLLYGPNAKASSGGENAANYANAEFDHLFEQMKLLDDGPEKEA
LIARMTAIVQRDAPWMFGYFPMSGGAYQQWVGNAKPTQMVRNTLQFMKIDPATRVARIDEWNRPLWWPLGVLVLLLALVI
WPSYRALKRRERQTVYGARAAASTPEQQP
>SEQF2266_AEE67273.1 putative oligopeptide transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGYVIRRLLYGVLILIGVNLFTFVLFFAINTPDDMARLAIGGQRVSQDAIEKWKTERGYDKPLFLNTRAEGAARYTDTV
FYQRSVPLLAMDFGASDGGRDIGREIRTRMGPSLALALPTFVLGLFASVVFSLTLVYFRATRLDFWGVVLCVVLLSISSL
FYIIAGQWLFSKLLRLAPYSGFADGLDMVKFLAVPVVVAIIARLGPEARFYRTLFLEEIGKDYVRTARAKGLSESVVLFR
HVLRNAMLPILTGTVSAIPLLFMGSLIAESFFGIPGLGSYTIDAINAQDFSIVRAMVFLGSALYIVGLIFADISYTLADP
RVRFE
>SEQF2266_AEE67274.1 putative oligopeptide transport integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLFVFLWTDIALYLLVAAVLAYAWRVRRSPTLRATWGRVARDAPAMCSAVVLMCFVVVGLLDSFHYRARLAPAPGVTAD
APPAYAPVVRSALDGLLATTVLARPEKTYSEPLAVRQFTKETLLIDGKPQRDFPLLRSGGAHLQDPDAQRWPDLRQRFWT
GLGLGAAAALAGGLLLVLALARRRASLRAALADLAANRTELPWRAMWITYAIICLLALTVSMLAGGYHVLGTDRTGNDVL
WQALKSVRTALIIGSLTTLAMLPPALAFGIAAGYFKGKADDAIQYLYTTLTSIPSVLLVAACALMMQVYIDNHAELFDTS
AARADLRLFLLCMILGLTGWAGLCRLLRAETLKLRELEYVQAARAFGVSHWRIMTRHLLPNVMHIVLITVVLEFSGLVLY
EAVLLYLGIGVDPSMNSFGSMIDSARLEMSRDPMIWWNLLAAFGFMLALVLAANLFADAVRDAFDPRTRRFRPARAAAAG
ALP
>SEQF2266_AEE67275.1 putative ABC transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTASAPLLRIEGLDVDVAGESGVTHAVKRLQLAVAQGETFALVGESGSGKSMTALALLRLLPDAGRIVGGQIELGGTDLN
DLSERAMRGVRGGRIGIIFQEPATSLNPVMRVGDQIVETLAAHTPLRGAAARERAIDWLRRVGIPEPERRIDDYPFQFSG
GQKQRLMIAIALAAEPKLLIADEPTTALDVTVQAQVLELLAGIQREMGMAVLLITHDLAVVRNVAHHVALMRGGEIVESA
DARTFFERPRHPYARELFEAIPTFAKRGRPLSAQGRAADQGKAAPEAGAVVLDVQDLLVHYPVRKGVLRRVAAWVEAVNG
VTFTLRAGETLALLGESGCGKTTTGKALLRLVEGARVQGRAMLDGHDLLGASRRELRRLRQDIQIVFQDPFASLDPRMRV
GDILEEGIASLRPELAASARRARAVGLLERVGLPADTPTRYPHEFSGGQRQRIAIARALAVEPKVLICDEPTSALDVSVQ
AQILDLLRDLQAELGIAYLFITHNFGVVEYLADRIAVMHGGRIVEMGPADTVLHAPRHEMTQRLLAAVPRLRFGAENE
>SEQF2266_AEE67276.1 MarR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDIDRISQQDQRVSSGDPLGHDRRPDSVEEIAQVLARQLTVYMAASQAAMAERLGLSLTELKALDLVLEFDALPTGQLG
QLLGISWGGATALINRLEAAGYVQRGRHPLDRRVIVIRPVAERCRALAEERRAAAEEVTFLSRQYDAHQLATVHAFLTQY
ARSLRHETLMWLQSRHGRDFVND
>SEQF2266_AEE67277.1 hypothetical protein BPTD_1959 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRTIATDLFCCSLVAGLAALPAASRADGPLRGNPVDALPQLERPTAPAAPAPALQAPTPEQRAVQARLAQRIVPRNFDV
AGVHALPFDQVAAFLTPLAGKEITVAQLVQQVDRITELYRSSGYPLSFALVQNQDFANGLVVVTVVEGHIGNVRIDGDIG
NAKRRLETLAGPLLAEKPLTQATLERQLNLMRIVPGVKITPSLDLPRRADGATELVIAATHGKFTSNGGVADLGTGMQPL
VDLGAHSLTPLGEQLKLTTSIPLNSDDVKYVAGEARLPIGADGFSIKVDGYHYQAKPQDDAIEYLGFDRKVTNDRIGVGV
SYPFLLNNQRSLTGTLGMYAVNAKDRYTHRDSDRWLQQDTRVRAATAELRYIDILPQRSTDLTVSVSKGFDAMGAKKSID
TNYGYSAIPDVDLDFTRFNLNVRQAFTLPAQFGLVLSGAGQYSSDILPSSEQVSFGSWRFAMGYPQGEQSGDKGVGVSAE
VNRRFGLGWRYLSAVQPYAMADYARTWYNNKGLQELNERHLSSLSLGVRFTDDKFYLFDFNVAKPVGSSTVNGDRDVRFN
ANYSLFYDAL
>SEQF2266_AEE67278.1 hypothetical protein BPTD_1960 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPGDIVPLSLQPHVVALSFLIAFFGSYVALVAAARIRASVHDGVNVRGFVLIAAVSMGGIGIWGMHFIGMQAQRMPFEV
GYALWLTLLSAAVAVAFSGMAFWYVGRQAFSLGRCVVAGVLAGLGVAAMHYIGIGAMRMPAMFLWNVELVALSVAVAVVS
AIVALWLAFNVQREWQRVAAAAVMALAVCGMHYTGAAAGVVVCTTAQTFADAQVGGVALPYVAFAGALAVLLAMRWQLHR
SYRGHQDRTARRIDALLRETTTGRPVRGHPGR
>SEQF2266_AEE67279.1 hypothetical protein BPTD_1961 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTQLKNFWRDEEGATAIEYGLIVGLIAVVIIGSVSLLGETLKGFFDTIQTELSAEAP
>SEQF2266_AEE67280.1 hypothetical protein BPTD_1962 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MENLLREHVWWAVYVAFNLLVVFYDLRVRRVPNRLLIAAALAQCAWLAWHAWGVQATPAAGARGWSDAGLGFVLGMAFVM
LWRMRLMGAGDVKYLAVLGLAIGAWPWLLVLVLAGLPSLAHALAQGFQVVRDPRRPRRGIPYAAYLALAAISLALMPSSS
PWCSWCSSWFFTAV
>SEQF2266_AEE67281.1 hypothetical protein BPTD_1963 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFVVFFVVLYGGLTWAFIFAAQQSLNHAAEEGARAALQWPGSTALEPRAARAGQLAGQYADWVRRMGGAPATVTVCGSGG
PIGGLAAGPCSGIALAADQIEVLVRYPYAQAPLVPLLPGMGVAVPGTLSARASVRVGGPVAAAGEGA
>SEQF2266_AEE67282.1 hypothetical protein BPTD_1964 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAISFPSRRRAQRGAAAVEFALVILLMLALMLGVLGYGALFWAQQKLSKAAGEGAQALLQANLRGAAASGVAGCEAARQ
EAGWLAIECVSETLDCAWTASDGGPAACAQVRVRYELAGWPLLATLRGAAGAVPGARAWFPDVLSAQAIVQIAQEPTT
>SEQF2266_AEE67283.1 hypothetical protein BPTD_1965 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTVAKIAAAVLALVALGLGYAAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAADLLKIERWPVQPAN
GYAESEALLGQMVRQDIPAGEPVTAPMLARGLARHLAPGERAVTIAVDELSGAQNRILPGDLVDVFVVMDRGIEVPGTQT
RLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDIDVPDLAL
FPERAPVLALRAGLTAEQQRDGKDGVNQAYAGEILPQLAGPTAAPVPKPRAAGGGGGRSIEVVRGGDVQAVRY
>SEQF2266_AEE67284.1 putative type II secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQHKVGRHWAGWAMALACLGAAAPLAAQPAAPAGAAQARELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGR
PGEVLLIGRQAGTTELRVWSRGSRDPQVWTVRVLPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAHRGAAEAAAA
AAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSGPWSGGVSLLPDLASGGMFGMLSYTSRDFSASLAL
LQNNGMARVLAEPTLLAMSGQSASFLAGGEIPIPVSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYAN
GISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPIIGAFFRNVQYSQEDRELVIVV
TPRLVRPIARGVTLPLPGARQEVSDAGFNAWGYYLLGPMSGQQMPGFSQ
>SEQF2266_AEE67285.1 hypothetical protein BPTD_1967 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNMKTHAREWAALDKSTCFLFCSGDNDVAQQLGHAIGDLGLLMQELPEPEQLARRLADIDPQVVFLDFTGGQADPGKLL
LAADLARVLARVAPAVPRVAVGYLAQPDGAIAALRAGVSDFVDPSVSPDEVHGVVQRLVSNRRIGGGSGGEHRSVLILGA
RPGVGASTLAVHMAGLTQERMAQAALARQGAVAGKPARSAEVMAAQLPLSDRVGVLDLGWPIGDCLLYLNISSDFDFAEA
ARNLSRLDGTLLNSAMAHTASGVSALALPREVEQVRALSPNDSLLLFERLRQHYGTLVTDAGGLANPEFVAKLARASHET
WLVTDQSVSALVSLAGAVQELEQFHVEKSALRLVVNRYDERYGMSAAQIAERFGLELAGTLPDRTLPLMVCTNQGRLLHE
QAERDIYVRAVQTLVDRLLAGSEAPRARHNSWLANWLPGVHRLTNVVES
>SEQF2266_AEE67286.1 hypothetical protein BPTD_1969 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLMAWLLGALALALLAAAALLLRQARDGARRQASEAFLERQLELRPGQPGASQASAARRRLPISNGAWRQLLLRAGVEP
TPRFLAASVGAHLGVPALAWLFGGWISAAAALLLVALLWYFHLWLKADRRRMVHQLPTFLDALVRLITIGNSVNAAFQNA
LGSVEQPLLEVLQRADSQVRSGKDLDAALHQVSRQYQLRELFLVSAVIALALRFGGRSDQVLERMAAFMRDLEQARDELT
ALSAEVRLSAWILALLPIGLALFIIIFNNQLFMGMWHDPMGFRLLVFAMLLQAGGSYWLYRMARSV
>SEQF2266_AEE67287.1 hypothetical protein BPTD_1970 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDRLLADSQTRMLLVAALLVLMVACAVVGAALVARAGRQQRSRAVVDRALAARDGHVAEPPPAGRMAAVASAAEHAGAKL
EHGKLGDSLLASDDRKLIDACGFRNPARARAWFMLARLLLAGLAPLAAWLVLRARHADLPLAYVACAVFLGFGLGWMVPK
WMLLRRIARRRECAEAELPLFIDLLRLLQGVGLSVDQSMHVLIQDFRSVMPVLGGELKIAAEQYARGRTREQSLSRLAQG
FDNDDLSAICRLIVQVDRHGGAVQDPLARFAERVRERRRLELKARVARLTVKMTGVMVVTLLPALLIITGGSGFVALLRG
MSQVMGEG
>SEQF2266_AEE67288.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRSHRLGLALAAAAPLLLGGCQTSNVDTAMQLMQQQQQEQALAQQREDADERKRLAAKPELALSLIREAQREGRYFASL
AYLDAYRQNFGDSPQVAVMRADALRMTGQIAQSESAYRALTGTDQAAAAWHGLGLLAGGRGDFDQAADYLARATRLRPTD
ANMLNDLGYALLRAGDPRGARLPLGQAAELAPANAKVLGNLALLLLVEGDYAGARQVMDRAALSPRARQRVQELASQTRH
AGVSAAAAVPVAQAAGREAMVMPVLQRPVMDRFGNPPLLQ
>SEQF2266_AEE67289.1 hypothetical protein BPTD_1973 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNVPRPLRARRRQRGSILIPAALAILIGVALLGAAQLGYFFYMKRELQKTADLAALTGVQVLSPGDEAACAAAGQAVRAS
VRANLGSRADDGLSIEPTCWRWARDEAELAPRYVREPADPSERYNAVAVVLGMPVRALFPFLGGRTLEVEAIAARPADPI
AAFSVGTGLLATGSGELTRLLKQVGLDIGGTAVLGYDIGLAGVKITPAGLLDALGIAVPTDISVAGLNQLLSANVSALDG
VLDAVVRAASRDSLLDANVGLVQAIETAVGVKDLAVRLGSETAERAGGLFANIQAPDAASALNVELDALEVLATAIGVGT
SGHAIACGVAVPLLMSGPARCSVVEPPSIAIGGVGATAYTSQIRVHAPLRLDTGSLLGGLVRLDLDIPLTVDVVNGHGTI
EALCHARDAAGRDLAVVSTRSSLLKICLGGPPAGLTGPELANWPFSTTASCDENLTRKRLLGLELNLLGKRVNLASLNPD
PPLVVPALQTTSEDDYYAGQRRSLGNELALGDTVKDLVDALLAALIGNSLQGGAGLGGGDQGELRKDLAGKIWADTAAEV
AACTPGASGKAGYDCRRARWSRGIENIENYSNGLTGFLGGLSANTLGLLGNLVTLDVVGLLGNVVGLVGNLVDLLGDILG
GILGVLFPTNQCATWSLLGGYQGSEAGCVNELGKALANSTPPSGGNPPNAIVVLLGYLLKPLADILNMIGADLLRPLIEN
VLGLRLGVTDVHMMSIDCDGKGVQLVY
>SEQF2266_AEE67290.1 putative response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDQAPACDAVDVYVWEGTSDIAFRAERALAGYEATVIHVDNSVALPPSRDAARPAVGLVSVSVMGDARFAGFDWLATQG
IPVIWVAGEERNHDPRYYAPAYSYTLPLAFTGAELRRLLFRLAGVARAAAVDEPRPAPAMIAVSPAMRGLLAEAEMFADA
RANVLVHGETGVGKERIARLLHDQSSWAGGPFVAVNCGAIPEGLFEAHFFGHAKGAFTGAVGAHKGYFEQASGGTLFLDE
IGDLPSYQQVKLLRVLEQSSVTRLGSTVAIPVEFRLVAATNKDLRALVAQGEFRADLYYRLAVIELHIPNLEARGAAEKT
AIFAALLRQQGIEDEPPAWLLQRVAAARYPGNVRELSNLAERVAILRRQLRAWDQPRIEQVFERHAQATPLAPATPGDAD
APAFNAAERAERERMLAALEANGWRRQDTAHHLGISRKVLWEKMRKLRLGEAQAETADGVADP
>SEQF2266_AEE67291.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIRYLGAGARLTVAGLALSSLAACASAQSESRPVVQQVEEKQAAAAPVEPPAPAPAARPASTVSELQGLIQARQVSELR
TTYNGSYGASLLYKPDELTYYVALFQQKDFWRVLKTKSVNQAESTYRAFASKTAELAEVDIQRIRLQAEYAHAEKQLGAR
NAELTALQADQALRQQQEQQVAVRQAQSRQEADSLSEQRQEVRSQLRAMQRQIDALQAEQARVAAPARRGK
>SEQF2266_AEE67292.1 hypothetical protein BPTD_1976 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALKVFDLQCEQGHVFEGWFGSHEDYDAQQARGQIACPVCESSRITKRLSAPRLNVAHLHQPAAAPAPAPAPAPESEAAR
MARLQAAVLRQVRELVRNTENVGARFAQEARRIHEGEADERPIRGTATPQERAELADDGIDVVSLPAFLDDERMQ
>SEQF2266_AEE67293.1 RNA polymerase sigma factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHPSSLQSQAPAPELAADAQLAARAAAGEDSAFETIMRRHNRLLFRTARSILHSDAEAEDALQEAYLRAWRALDSFRADA
RLSTWLVRIVINESLGRLRRGQAQVIPLDAAMESTELQNQEWLHDAIDQQPDRQAMRAEIRRLMEARIDLLPDAFRSVFV
LRAVEELSVEEVAQALDIPEATVRTRFFRARGLLREGLSRDVDMAIGDAFSFDGQRCDRIVAAVLARRGERAGA
>SEQF2266_AEE67294.1 hypothetical protein BPTD_1978 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFLQISSPCAARRRFLGHGGLVLSAAAVALLAGKDALAAQAGSGSSQDVQILNTALAAELEAIAAYQLDAESKLLDKPV
LALALTFQGHHKEHADVLGKTVEKLGGQPVAAKRSYAFPTSQLKSQADVLRFAAKLEQGAVSAYLGAVPLFANRDLSKAA
ASILGDEAMHWAVLRQALGEPPVPSAFVS
>SEQF2266_AEE67295.1 putative cytochrome c [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAGLAWRAGALCLALAAPSAARAAAPDPVRGEQVYARCLACHALAYDRVGPRHCGLLGRKAGSVPGFAYTQAMKDSGLT
WDAATLDRFLADPLKTVPGTAMTYAGVPDAGERADLIAYLRAAAASPACAGVATPH
>SEQF2266_AEE67296.1 elongation factor P [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTAQELRVGNVIMVGKDPLVVQKTEYNKSGRNAAVVKLKFKNLLTGSGSESVYKADEKFDVVVLERKECTYSYFGDPMY
VFMDEEYNQYEIEADSMGDALNYLEEAMPVEVVFYDGRAISVELPTILVREITYTEPAVRGDTSGKVLKPAKINTGFELS
VPLFCAIGDKIEIDTRTNEYRSRVN
>SEQF2266_AEE67297.1 hypothetical protein BPTD_1981 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRADIFCRVIDNLGDIGVCWRLARRLAHGRRWQVRLWVDDLAAFARIQPGIVPDRDQQVCDTIEILRWDDRAEWPQTPGD
VVIEAFACDPPPAYVAAMRRFQPVWINLEYLSAEAWVETCHGLPSQRADGLVKHFFFPGFSAATGGLIREPGLSRDRDAL
QTSRAQQRTLLRALGLDEAALARRDDGARLVNLFCYPDAPYQALAHALMQDARPTLLLVPQGVAPGLPEPGQHGQLTLAR
VPYVSQPDFDRLLWCADLNCVRGEDSFVRAAWAARPLLWQIYAQAENAHLEKLQAWLARYPAPAAAHALIRAWNQAPGAP
APQQALAGALAEPAWGEWNQAARAWDAAQAARPDLGDALADFCAELAKTS
>SEQF2266_AEE67298.1 hypothetical protein BPTD_1982 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARTRSQSSPRLNRDASRLVALAHALDRSGSKVEDLYWEAQLAEAITKLLRSGHDAPLESALDNLAQTDPGAYEVLIEQS
ETLSESMQIEKNGTRHDVVLLVAPVVAWTRYTIPTGPIPAPAQQALLAQLHGHILADGVRVALMPHLVSIDQMPRTFAET
WQWLHRLGTQALGAETAKPALNDDVETANMLADTRYVVAAVAVPERAPVFRWQERWDDPQASRDACLAQWVEQAQPTLAA
LLPGCGIECLLPDAYYVSNREADRRVRPLSLRAAIAWLESAVSLEPSQMRAVVAGCGEARIDEYRIGFTARNSNDVYYGC
VWPLYGREDDVPADEGQPNAVDEIAALLKEYGVSDVRRIPGVLPPEYCEDCGAPHFPNPLGELVHAELPEDAEAVPAKFH
>SEQF2266_AEE67299.1 hypothetical protein BPTD_1983 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLPTLFVSHGSPMLAVEPGRTGPALTAWSDGLPERPRAVLVVSPHWMGQGLAVSTRDRQVAWHDFGGFPADLYQLQYPA
EGSPRLAQQVVDVLAHAGIQAGNDARRPLDHGAWVPLRYLYPHADLPVVQLSLDMERDARGQYALGQALAPLRDDGVLVI
GSGSLTHNLRDVRMPHGAPPADYVAPFQQWYAEHLAAGDVEALLDWQARAPGAARAHPHDDHLMPLYVALGAGGMPARRL
NDEVAYGALAMDAYQFGA
>SEQF2266_AEE67300.1 aconitate hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHNTFDTLKTFKIGKKTCQFYSLPALGKALGVDVQRLPVSIRIVLESVLRNCDGAKVTQEHVRQLANWQANAKREDEIP
FVVARVVLQDFTGVPLLADIAAMRSVAAKMGKDPKRIEPLVPVDLVVDHSVMIDYFGTKNALDLNMKLEFQRNRERYQFM
KWGMQAFDTFGVVPPGFGIVHQVNLEYLARGVHRDKNNDVYYPDSLVGTDSHTTMINGIGVVGWGVGGIEAEAGMLGQPV
YFLTPDVVGVELKGKLRGGVTATDLVLTITEMLRREKVVGKFVEFCGEGTASLSVTDRATIGNMAPEYGATMGFFPVDER
TIDYFEGTGRTAEEIAALEAYFKAQKMFGVPKAKDINYTKLLTLDLGTVAPSLAGPKRPQDRIEIGNVKNTFTELFSKPI
AENGFNQPADKLHQAYTTSAGTKVKNGDILIAAITSCTNTSNPSVLLAAGLLAKKAVEAGLKVPKHIKTSLAPGSRVVTE
YLTKTGLLPYLEKLGFDVAAYGCTTCIGNAGDLTADLNEAILGNDLVCSAVLSGNRNFEARIHPNIKANFLASPPLVVAY
ALAGTVTRDLMTEPVGRGKNGDVWLGDIWPSSEEIQALLKFAMNPTAFKENYSQVKSNPGKLWENIKGVTGETYNWPEST
YIAEPPFFEGFGMTPAAMPAVKGARALGIFGDSVTTDHISPAGSIKETSPAGKWLKENGVMKADFNSYGSRRGNHEIMMR
GTFANVRIKNLMIPARPDGSRFEGGETLFQPTGEQMSIYDAAMKYVAQGTSSVVFGGEEYGTGSSRDWAAKGTQLLGVKA
VIARSFERIHRSNLVGMGVLPLQFKGSDSAQSLGIVGNETFDVTGLEGGIKPMQDVTLTIHRADGSRQDVTVLLRIDTPI
EVDYYQHGGILPFVLRQLLAA
>SEQF2266_AEE67301.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFGRWILLPTLLALAGCASTRPPADPENICAIFREKPSWHDAALDVQKKWGAPVNVPIAMMHQESSFRHDALPPRYYFLG
FIPWGRVSSAYGYAQAKDETWADYKREAGGWLASRDNFSDALDFMGWYMSKTQRINGVSKWDAYGQYLNYHEGWTGYRNR
SYDRKAWLKRVAQQVQARAERFGAQYKGCERELNRGGWLF
>SEQF2266_AEE67302.1 putative ferric siderophore receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPLPLAYLAALLPWYAGVIQAQSAPAAGDDASITLEAVRVEASADASAGGLAPAFAGGQVATGAKVGILGTRDNLETPF
SITAYTNELIQDRQAKGVGDVLQNDPGVRVARGFGNFQESYFIRGFILSSDDIAYNGLYGLLPRQYISTQLFERVEVLRG
ASAFLTGAPPSGGGIGGVINLVPKRAPNEPLTRFSAGYGSDSVLEASADIGRRFGPDDSVGIRINAAQRGGETAIDGERT
RTTVFALGLDWRGERARLSADIGYQDNRLKRARPNVTLAGDAAKVPGAPDAGSNYAQPWSYSNERDVFGTLRGEYDFNGR
ITGWVAYGMRQSKEENSLANLNNVNGAGQGKFYRFDNAREDTVNTGEIGLRAKARTGPVGHELVASASYFDLEKKNAYVM
DFFNQFDTSIYDPVSYAKPAISSTAFRGNDMDDPAKQGVIRLASYALGDTMSFFDDKVLLTAGIRHQRLYQRDYSYDTGI
GGTPYEQSHNSPAAGLVVRVTPQVSLYANYIEALSAGDTAPQTANGLPVVNHGESLAPYVSKQKEVGVKFEHDGLGGGLA
LFSTDKPRGFVGDDQVFRASGKDRHRGVELTTYGELTRSVRVLGGLTWLDAKQLSTGNAATDGKRVIGVPRFQANLGVEW
DIPGVQGLTVDGRVVYTGSSYADAANTLEVPGWTRLDAGLRYMTDIGGHLVTWRARVENIANRDYWSSVGGYPGNGYLVL
GGPRTFTLSASMEF
>SEQF2266_AEE67303.1 putative haloacid-type dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEPVRGMDIEVLFFDVLGTVVDWRGSIADEVAAFLKRHELPHVDAHQFADAWVGQYDAAIEPIRAGQRAFAPLDIINMEN
LQACLAQFDLAPARFARSELETLNHAWHKLRPWPDSVAGIAQLKQRFIVAPLSDGHTRLLVDMAKHAGLPWDMVFGADAS
RSYKPAPQAYLHACALLDVPPQRAMLVAAHGYDLDAARSCGLKTAYVQRQRAADPSKAGYRGAPENWDYQAGSLTELAQL
LAKA
>SEQF2266_AEE67304.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67305.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATHPVGPTLLAALTLLAACSGSMAQEPPYKSTILGLQATILDLKGLPSDTDGGISDLSAQVGALAARHEGVSVRQGKDA
VTIAMMGDVLFDFDKADILAAAEPTLRDIAELIKSPATGIVAIEGHTDSKGSDSYNKGLSLRRAQAVAQWLGAHGVDAAK
LSVRGLGAARPVQPNQLAVKIQ
>SEQF2266_AEE67306.1 hypothetical protein BPTD_1990 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDAVRSGEILSIKIRFKPVVMGKTETIYSQISKSDYENSFYVIAGNKKHLLLKDSNDVPLTNPKVLIRTSSDAPIAGSW
QGKFPAPPKEIKEVSLTIPGVETFDVIQITDR
>SEQF2266_AEE67307.1 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLETYHQHVADRAALGIPPLPLSAQQTADLIELLKNPPDGEAQNLLELLTYRVPAGVDDAAKVKASYLAAVAFGTESCAL
IDRAKATELLGTMLGGYNIGPLVQLLDDAEVGTIAADALKKTLLMFDAFHDVKEKADKGNANAKSVLQSWADAEWFTSRP
EVSQSLTVTVFKVPGETNTDDLSPAPDATTRPDIPMHALAMLKNKRDGAAFEPEEDGKRGPVQFIESLKEKGHLVAYVGD
VVGTGSSRKSATNSVLWFTGEDIPFVPNKRFGGVCLGSKIAPIFYNTMEDAGALPIELDVSKMEMGDVVELRPYDGKAIK
NGETIAEFTVKSDVLFDEVRAGGRIPLIIGRGLTAKAREALGLPPSTLFRLPNNPADTGKGYTLAQKMVGRACGLPEGQG
IRPGTYCEPKMTSVGSQDTTGPMTRDELKDLACLDFSADLVMQSFCHTAAYPKPVDVKTHHTLPQFISTRGGISLRPGDG
VIHSWLNRMLLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGVTLRDLVNAIPLYA
IKQGLLTVAKQGKKNIFSGRILEIEGLPDLKVEQAFELSDASAERSAAGCSVRLHKEPIIEYINSNIVMLKWMIANGYED
ERSLGRRIKAMEAWLADPKLLEPDADADYAAVIEIDLADIHEPIVACPNDPDDVKTLSDVAGAKIDEVFIGSCMTNIGHF
RAASKLLEGKRDIPVKLWVAPPTKMDAQQLTEEGHYGVFGTAGARTEMPGCSLCMGNQAQVREGATVMSTSTRNFPNRLG
KNTNVYLGSAELAAICSRLGRIPTREEYMADMGVINKSGDQIYQYLNFDRIPDYKDVADVIEV
>SEQF2266_AEE67308.1 putative exonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVGPAGRCFYCCFGINMAYFRRYTTPHPYGQTLRAGAAAGRASAARDGLRALDGPFVVADLETTGLSVATCEILEFAAV
RVSACGQIEREFTQVVRTDGRVLPFISRLTGITQAEVERDGVPVRQAFGDFLDFIEGGPLFFHNASFDRRFLQAAADRTG
LPFEAQTHCTLMLARQAWPELPSHKLNVLARHLGASEPTHRALADVRTTVAVALAARARLAAQG
>SEQF2266_AEE67309.1 hypothetical protein BPTD_1993 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAASDTPGASAGEFDAIRDAVRGFAAERQWEPFHSPKNLAMALAGEAGELVAVFQWLTEAGSRELTPSQRQAAADEIADV
QLYLVALADQLGLDIPAAVAAKMRKNALKYPAERFRGSARKYNDESGR
>SEQF2266_AEE67310.1 hypothetical protein BPTD_1994 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIQEIASILVQPGREADFEAGVAQARPLFMRARGCHGVALHRSIEAPQRYTLVVDWETVDNHMVDFRQSADFQEWRKLVG
ECFAEPPQVHHEQKVL
>SEQF2266_AEE67311.1 YciI-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHYLLFYDVIPDYPARRAQYRAEHLALARAAAQRGELVLAGALADLIDGAVLLFTGDTPAAAEAFAAADPYVREGLVTHW
RVRPWTTVVGEQASQPVPD
>SEQF2266_AEE67312.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLSHLLLALSVVFIWGTNFVVIKWALADFPPFLFAALRFLLSVLPWVLLFRRPAVPWSRLAAFGVLLGVGQFGVLYWAM
QRDITPGMASLLVQSQVFFTILMSMAFTGERMRLWQALALVLAVAGYAVVAWYSVADPGAAITLLGVGLVLLAGLSWACA
NMVARTAGRVNMVGFIAWSSLFAVPPIVLISLLAEGPAAIAQAVTHASPAAWAAVLWQAVGNTVFGFGAWNWLLARHPAT
TVAPMALLVPVFGMLASTLLLDESLPGWKLSAAALVLGGLALNLYAGRLDAAARMARAGR
>SEQF2266_AEE67313.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSILQHVLFLACVALATYAQTMTGFAFGLVLLGLTGLLAVAPLPDMANTVSILTLVNALVVIDRARPQVDWTLVRPALVS
SLAGVALGVFMLDWISGSAAVLLQWLLGLTILACAIQLVARARPLARVSSRRSFVGFGVVSGVLGGLFSSAGPPMVYHLY
RQPLPLATIRNSLLILFSCNAMTRLALVGAQDSLHTITFWLSLKAFPVVVALTWLVRRYASARSIHTVKRLVFVLLVAAG
LGLLVPASGALWTMWH
>SEQF2266_AEE67314.1 hypothetical protein BPTD_1998 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKIATLAALAASAALVGPALAGGSHSSSGVGAYGGSVKGSVESISNGSAAAASQVMGTGFSKQFASGETSGYASMGGAI
HRDGVEVWTDTSQYSKTNGFGMTGGNAPAQIGDVIVNGAGAFAESNTEAIAKGKFQMFQIGRIGGYGHR
>SEQF2266_AEE67315.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE67316.1 LysR family transcriptional activator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDVRALRYFVETVRTASFTQAARALFVTQSTVSKMIRQLEDEVGTPLLIRDGHTARPTDTGRIVYERGLHILGAMRQLDA
EVREAVDLQRGELEVGIPPMINLLFTPVVKRFRERHPHIRLSLREDTGQAVERLVAAGELEVGATVLPIQDPGPLQATRF
GSYALWVIGPPAAAWAGKTALPLTALRDLPLLLPTDDFALTRRLRQACAQAGFAPRIAAQSAHWDFLAAMASADLGVALL
PEPLVQRLKTRGLSTARLAKAGLQWEIGHIRVRDRYLSHAARAWLEVATEVLGNGQPARKPSR
>SEQF2266_AEE67317.1 putative acyl-CoA transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGDSMHLERIRHPGLRARLASPQEAARLVHDGMTVGMSEFTRAGDCKSVPAALAERAAAEPLRITLLTGASLGHDTDKL
LAQAGVLARRMPFQVDTTLRRKINQGEIAFVDQHLSETVEQLRAGHIGPIDIAIVEAAAITEDGGIVPTMSVGNSASFVE
QARLVIVELNLGVPAAIEGLHDIVIPGARPGRQPLPLVSVDQRIGAPCIAVDPDKIAAIVVTNEPDSPSNALPPDEEIGA
IAGHIVGFLRQEVNQGRLSRSLLPLQAGIGTIANAVLHGFGESEFEGLTMYSEVLQDSAIELLDQGKLSFASASSITVSL
PVYERILGNLEHYRQRIVLRPQEISNAPELVRRLGVIAINTALEFDIYGNVNSTHVGGTHMMNGIGGSGDFVRNAHLSIF
VTKSMARNGDISSVVPMVSHVDHNEHDVDILVTECGLADLRGLAPRERARAIIAHCVHPSYRDALRDYFERACRRGGQTS
HLLEEAFSWHQRYNETDTMRLAAPAARRVA
>SEQF2266_AEE67318.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTSTSRLPLNVLPVFRVVADLQNLRAAALQLHLTHSAVSQQIRTLETQLGFALFDRRARRLVLNPAGQALLRATEPALA
LLDEGVQAAAAAAAGSGLRLRISVLPSLAQLWLLPRMARWHAHHPDIALEIETSQQVVDLHREGFHAALRFGRGPWAGQQ
SEPLFDTPTRMILVAAPATARRLAGADPQRLAHEPLLGEQGLWQAWFQAAGVRATIKPVALFNDAGMLAQAAEQNLGLAL
VRELLAADALTAGRLVRLSPLAIAAEQRQTFHLVYRPELSDWPPLQALRQWLHDELALARATLAHEAGTPPRRRRARPAT
>SEQF2266_AEE67319.1 hypothetical protein BPTD_2005 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDIAHRETQSRFETTVDGQRCELDYVLRDHIMTIVHTGVPAPVGGRGIAAELTRAALDTARQRGWKVVPQCSYAAVYLK
RHPEYQDLQA
>SEQF2266_AEE67320.1 putative hydroxlacyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPPEHVVSPPIARVAVVGAGTIGASWAALFAARGLRVTVTDPAPGAAESLRGRIADIWPALAAAGAIQDGADPDAVRFD
ADLQEALRDADFVQENAPERPDFKADLFTRMDAALPPHTIIASSSSGLPMSALQAGCRHPERCVIGHPFNPPHLIPLVEV
VAGRQTAPAAIERAMAFYRSLGKYPIRIDKEIPGHVANRLQAALWREAIHLVADIDAAVTQGPGLRWALYGPHMTFHLGG
GEGGLAHFLDHLRGPVQTWWDDLGQPELTPALQRKLIQGVAAEAGQRSIAELSATRDAQLTAILAILRQQGSPHP
>SEQF2266_AEE67321.1 amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQLWRMSASDLAQAIRAREVSARAAAEAALRRLDEVNPRLNAVVDWRPDEVLAQADEIDAALARGDDPGPLAGVPVTVK
INIDQAGFATSNGVALQKDVIAQANSPVVDNLRRAGAVILGRTNAPAFSLRWFTSNLLHGRTLNPRNAALTPGGSSGGAA
SAVAAGIGQLAHGTDIAGSIRYPAYACGVHGLRPSLGRVAAYNAALPERSLGGQITAVSGPLARTVADLRLGLAAMAARD
ARDPWWMPVPLEGPPAPRRAALCVSPDGLETQPAVCAALYEAAARLRDAGWQVEETGAIPPLQEAADLQIRMWLADGYEA
LLRAAQQEGDPGALVALCGQQEAARALDLPGYTATLTRRATLTRLWQLFFEDYPVLLLPVSAEPPFADDLDLQGADAYRR
VWRAQLTQVGLPFMGLPGLALAMPGVGAAPLGVQVVAARFREDLCLAAGADIEARGAPVTLAGP
>SEQF2266_AEE67322.1 hypothetical protein BPTD_2008 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMQAGMYSQTVTFLFSLFVLCFITCTISGLVLFLFKARRANEELRHPLLQHRPFKQYPFAIQASIMLDYFLRLAFPRTKW
WLIGHANKQLAHVDPKRVPLDVKWPIIGFWGACWLGLLAMISLWAMLLLGM
>SEQF2266_AEE67323.1 gamma-glutamyl phosphate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSIETYMQSVGEQARTASRAMMRATGAAKNQALLAMAEAILAQRAELQAANAKDVAAARANGLEAALLDRLTLSDRSIE
LMAEGLRQIAALPDPGGSITATSVRPNGMRVAQMRVPLGVIGIIYESRPNVTIDAAALCLKSGNATILRGGSEALHSNVA
LGRIVQAGLQAAGLPTAAVQVIDTTDRAAVGKLVTMTEHVDVIVPRGGKGLISRLAQEARVPLIKHLDGNCHVYVDAAAD
LAKAHDIAFNAKTYRYGVCGAMETLLVHADVAQRLLPALGQALREHGVELRGCARALQWLPEGKPADDADWATEYLGPIL
AVRVVDTIDEAMDHISRWGSGHTDAIVTENLSAAQRFQREVDSSSVYVNLPTCFADGFEYGLGAEIGISTNRLHARGPVG
LEGLTTLKWVLNGEGQVRA
>SEQF2266_AEE67324.1 DNA polymerase III subunit delta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAPLDSDALASHLARAGGRLAPLYTVSGDEPLLVTEAADAIRAAARAAGYTDRTSMVMDARSDWSAVAAATQSVSLFGD
RRLLELKIPTGKPGKSGGEMLARLADQARDQADADTLVVVALPRLDKATRESKWAQALARGGVMADIANVERGRLPAWIG
MRLGRQNQRADTATLQWMADKVEGNLLAAHQEIQKLGLLYPEGQLAAEDVERAVLNVARYDVFGLRDAMLAGDTARTVRM
LDGLRAEGEALPLVLWAVGEEIRLLARVAQARQQGQDAGALMRRLRIFGAHERLALQALGRVAPGAWPAAVQHAHEVDRL
IKGLSVPGRLADPWEEMTRLALRVAAAGARP
>SEQF2266_AEE67325.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNFAGHFLHFPRLTWPRGIALAMLMLLAGCGFTMRGVTPLPFDTLYVGIPDNTRFGADVRRALRAASPNTRQVPTSKDAQ
AILQQVNTDRTLREVSLNAQGRVEEYELGIDYTFRLIDAKGNALVPDTTMSIYREMPYDDQVVQAKQGQIDALYQSMEKE
LVNRLLRRLTAPDVHEAAARAAAGTLDPDAPVYDPNQATPASQPSPWNTPNAYPGMDTP
>SEQF2266_AEE67326.1 leucyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQERYQPNSVEAAAQQTWQARDAYLVHEHAKNPDGSEKPKFYACSMLPYPSGKLHMGHVRNYTINDMMARQLRMRGYNVL
MPMGWDAFGMPAENAAIKSKVPPAKWTYDNIAYMKKQMKAMGLAIDWSREMCACDPKYYKWNQWLFLKMLEKGIAYRKTQ
VVNWDPVDQTVLANEQVIDGRGWRSGAPVEKREIPGYYLRITDYAEELLDQVSTNLPGWPERVRLMQENWIGKSEGLRFA
FPHRIAGADGKLIQDGKLYVFTTRADTIMGVTFCAVAPEHPLATHAAQSNPALAAFVEQCKLGGTTEAEMATREKEGMPT
GLTVTHPLTGAEIDVWVGNYVLMTYGDGAVMGVPAHDERDFAFARKYGLPIRQVVALEGKTYSTDAWQEWYGDKQAGRTV
NSGKYDGLAYQAAVDAIAADLAAQGVGEKQTTWRLRDWGISRQRYWGTPIPIIHCADCGPVPVPEQDLPVVLPDDLIPDG
SGNPLAKNEAFLSCSCPRCGKPARRETDTMDTFVDSSWYFMRYTSPDNDQAMVDARNDYWMPMDQYIGGIEHAVLHLLYA
RFWTKVMRDLGLLNFDEPFTKLLCQGMVLNHIYSRKTPQGGIEYFWPEEVDNVYDAKGAIVGAKLQRDGSEVNYGGVGTM
SKSKNNGVDPQSLIDTLGADTARLFVMFASPPEQTLEWSDSGVEGANRFLRRLWALGYAQREAVGRGLATGADWAQAPAP
VKELRREVYGLLKQADYDYQRIQYNTVVSACMKMLNAIDDAPLPEGPAADAARAETLGLLLRVLYPVVPHITWHLWQDLG
YAEHLGDLLDAPWPHVDEAALVADEIELMLQVNGKLRGSIRVAAKAPKEDIERIAAAQEEVARFLEGRPPKRVIVVPGKL
VNVVG
>SEQF2266_AEE67327.1 putative transmembrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPARARLTAPIVLLMSVATGLAVASNYYAQPLLHTIGAEFALTTATAGAIVTVAQLSYAVGLILLVPLGDLYERRTLIA
LMTALSAVGLLLSAFSPGIGWLMLGTAVTGLLSVVAQVLVPFAATLAEPHERGKVVGAVMSGLLLGILLARTIAGALADL
GSWRTVYWVAAILMLLMSMALWRVLPRSVNPTRLSYPRLLASIVQLYAQEPLLRARSVLGALLFAAFSMLWTPLTFLLSG
PNYGYSNTTIGLFGLAGAIGAYGANRFGRLNDRGQGNRSTRQGLLLLASWPLLAWGAHHVAPLLAGVLALDLAIQAVHVT
NQSAIYRLRPEARSRLTAGYMTSYFLGGAAGSLLSAWIYAHAGWLGVTAAGALTSLAALLYGCLARSARIPETTPAPAIA
>SEQF2266_AEE67328.1 MarR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKDHVDLVLSQWAHERPDLDVSSMAVLARIFRFNTAALRRIEPLFRAAGLHQGQFDLLATLYRAGAPHALSPQQLTAALL
LSSGAMTHRLDQLEQGGLIARSPNPDDRRGVIVSLTPAGLRTIRQILADYLEAIDALLTPLSATERRQLAGLLKRLLAEH
DRTTPGGIPQ
>SEQF2266_AEE67329.1 DNA-binding protein Bph2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPIKEALNKSQLIAYLVENTGVEAKSVKAVLAGLESSVLASVDKKGAGEFTLPGLFKVAVQKVPAKAKRFGKDPFTGEE
RWFPAKPASVKVKVRPLKKLKDAAQ
>SEQF2266_AEE67330.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67331.1 putative sulfate transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGKTVRGGAAAILGCWVNDITPGTLRADAQAGLLGALLVLPQGVAFAMLAGLPPEYGLYSAIVPCIVAALFGSSRHVLSG
PTNANSLALFAVLAPLALPGSPGYIQMALAVTILVGVMQLAVGLLRLGSLANFISPSALFGFTSGAALLIAVHALKDALG
LEGVQAHSAGAVLAAVGSRLGEAHWGASVVALTTIIVTLLVRHWDRRKPHMLAGLAAGTLLAAALNAGVFTAAGQPISVL
GGLAQPWPPFHVPAVQWSVLPDLVGVAVPLTIVALAQSISIAKAVAMRSGQLIDANREFIGQGLSNVVGGLFSSYLSCGS
LNRSVPNYEAGARTPMAAVFAALLLVLLVLVSSPVLALIPHAAIAGLLIVVAWSLLDLPRWRVLVRIAPREALIAAATLA
ATVTIRMEIAILLGTLLSLTAYLYRTARPAMRPMGFDAADPQRHFAVLEGQPGELPECPQLKLLRMEGSVYFGAATHVTD
RLQALRAGASAGQRHLLVMSKSMNFIDHAGAQVWEEELRRRRAGGGDLYFHRPRPEVLRDWRRSGFIDRLGADHIFPDKA
TAIHTIYERLDPEICRGCTARIFTECGPPGTAHQPGAERAE
>SEQF2266_AEE67332.1 50S ribosomal protein L33 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKDIREKIKLESTAGTGHFYTTTKNKRNMPEKMLIKKFDPVARKHVDYKETKLK
>SEQF2266_AEE67333.1 50S ribosomal protein L28 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVTAKAIRTIDKNGIDAVLADLRARGEAV
>SEQF2266_AEE67334.1 putative transmembrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPQTISRSMPGWLILMGALTAIGPFSIDMYLPAFPSIAAGLGVERGEVERTLAAYLIGMAGAQIIYGPLADRYGRKLPM
MGGLILYVLASLGCALADDIQTLTACRVAQALGGAAGVVIPRAVIRDHYETQEAARAMSLLMLLMGLAPILAPLAGAQLL
AFVGWRSLFWLMAAGGLALLLAVALTMKETLAPERVLPLRAGTILSNYRALLAHRGFMGHSLAGGMGQAGMFAYIVGSPR
IFIELYGIAPQYYGLLFGANAAALIVGSQISARLLRKSAPATLQQRAQVALAVASLSALALALALLGLMSLPLLMACLMG
YMFSQGFVNPNSAALALAEQGRRLGAASALLGTLQLSCGALAGLIISIWPAESVLPLAAVLAGSACLSWQFGRMARRPA
>SEQF2266_AEE67335.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67336.1 putative periplasmic substrate-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFTPVKTLAALAALCAFSGAAQAADKPQCEVSRPVNFGGMNWESNLVLVDIERFIMEKGYGCKTEVLPTETLPALAALE
RGDLDINTEIWLNSVADPWDRAQKTGKVKRVGELYMGGEAWFVPRYTAERLPELKSAADLPKFKDRFKDPEEPGKGRFYG
CPAGWGCEVTSTNLFHALKLGDSYTLYSPGTGAAQKAALMSAYKRKQDVVFYYWYPTPLVGSMDLVKLELPPYDAEKHKC
LTAPKCSDPQPSAYPENPVFTAVNTRFSEEAPKLTEFLSKVAVPLPVMDQTLAHMEESGDESGAVAQWFLKNQADVWKKW
VPADVAERVQTAL
>SEQF2266_AEE67337.1 putative binding-protein-dependent transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFPEVIPARAVRGAIDGFVDHLVTNYADTLEAMSQPFLSVLVWLEQVLRQSPWWAVVAVTIAIAWLVSRRIGLSLAMGAL
LCVIGVLGLWDAGMQTLALMIMAAGLSVVIGIPLGVLMARVDWLRAGMLPVLDVMQTMPSFVYLIPVVMLFGLGKIPAII
ATVIYAVPPLIRLTDLGIRLVDREVLEAARAFGANPRQQLFGVQLPLALPNIMAGINQTTMMALSMVVIASMIGARGLGY
EVLLGINRLEVGRGLLAGLGIVVLAVLFDRITQSYGQRVRTGGQR
>SEQF2266_AEE67338.1 putative ABC-transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKIEVKNIYKIFGPHPGKWLQAARDGISKEDLLAKSGHTLGLRDISLSIEEGSIYVIMGLSGSGKSTLIRHFNRLIEPS
AGHILVDGVDVVSLNKRDLETFRQKKMSMVFQRFGLFPHRTVLDNAGYGLAVQGVARAEREQRARHWLDQVGLSGFENQY
PHQLSGGMQQRVGLARALATDAEILLMDEAFSALDPLIRREMQDHLLQLQAKLNKTIVFITHDLDEALRLGNRIAILKDG
ELVQEGTPEDILLNPATEYVQSFLQDVNRTKVLNAAHAVNPPRLTLTMRSRPAHALDRMQALSYEYAPVLDGKRLAGVLM
AAAAQQAVDEGARDVSRFVEDLASVPATAGLDQVLAQLVHSDQPVAVTGEGDEFIGMLSRKKVVELVTPVLAESDSADGQ
GDAADAASDGAGQAHERDAA
>SEQF2266_AEE67339.1 putative tautomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLLNVQIMQGHQPAQKSALLAAACQAVVDSIGAPLASVRVVLEEVPAAHVIVAGELGRQMALVTVDMIAGRTDEQKEAL
IGALNRAVCDSIGIDGTDVRVMIHDVSKANMGVANGISARAAGR
>SEQF2266_AEE67340.1 beta-ketothiolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNEVVVVVVAAARTAIGDFGGGLKDVAPCDLGATVIREALARAGVAGPEVGHVAVGHVINTEPRDMYLSRVAAINAGIGK
ETPAFNVNRLCGSGLQAIVSAAQTIMLGDTEIAVGAGAESMSRAPYIAPAQRWGARMGDSAMVDMMTGALSDPFGRMHMG
VTAENVAARYSISRADQDALAVESHRRAAAAIDAGRFRDQIVPVTLKTRKGETVFDTDEHVRRDITIEGMAALRPVFQKE
NGTVTAGNASGLNDGAGAVVLMSAAAAAQRGIAPMARLVAYAHAGVDPEIMGIGPVPATQAALKRAGLTVDQLDVIEANE
AFAAQACAVTRQLELDPAKVNPNGSGISLGHPIGATGAIITVKALYELQRVGGRYALVTMCIGGGQGIAAIFERV
>SEQF2266_AEE67341.1 hypothetical protein BPTD_2028 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIRYTPSELDQPSLSEADGIRYLHFGTEWVQGAMLIRDPARLVLEYTAQMMAWLLFLEPPREQSIGLLGLGAGSLARFC
LKHTRSPVTVVEWNPQVTAVCQMFFRLPTPQRLDVHHDDAGAWVADPARAGDCPVLMVDLYDAQARGPVRDSVKFYRDCR
RVLGEVGVLSVNLFGRHESYGRNIDNLSKAFDDRLVLLPEIDAGNQIVLAFSGPPLAITPAELLARAETVEAQYGLPARR
WARALTRHAVDGVLHF
>SEQF2266_AEE67342.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTPIVRQALYLEVADRLRTMIRTHALGAGAWVDEAGLTEQLGISRTPLREALKVLATEGLVRLEPGRGCFVNELTVRDL
EQIFPLMAMLEGRCAFEAAQRAGEDDLRALEPLHRALQAHAQAGRIDAYYETNYRIHVAVQTLADNRWLSDMVDNLRKVL
SLFRHKSLALPGRIRESCAEHMAIFAALKARDLEGAEALTRKHLLRQLAALQALAGQEPAGGAAAIDSPAVQAVQELNHV
RTRSPGIRTRRTHA
>SEQF2266_AEE67343.1 putative malonyl-CoA decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSALDPQASARVARTPDAEPEAVDASAAGESAGLIARLGRLFERDRLPPPADLAQLFEARLTDVRANKLAQAWRLAYEQA
DGKRRRAMLGGLAQVGAGMQGDGAQGTRLFKRFNALPDGLRFLVALRADMLRWRKQVAGLQALDKELEALLSAWFDVGLL
ELRPLTWDSPASLLEKLILYEAVHEIRSWDDLRHRVAGDRRCYAYFHPQMPDVPLIFVEVAFSAQMADNVQALLDTSAPP
QDLDKARWAIFYSISNTQPGLRGISFGNFLLKRVIDRLLQELPKLKFFATLSPIPGFVDWLSRLDAQEVEQAVRDKARTR
SGAPDGARWVARLARAATGKPSEVVQRAGLRLAARYLQAMRAGQPLDPVARFHLGNGARIERLNWAADTSAKGLAQSCGM
MVNYLYELGELDGNLARLNEGKPQVSRGIARLG
>SEQF2266_AEE67344.1 hypothetical protein BPTD_2031 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRAMKPNSPPGQILCRIDAGVAHVTLSHPGRMNAMTVAMWRQLREVFEALGADAALRCVVVAGAEGHFAAGADIREFPA
ERADLAGVQRYHREILAPALAAVAACPHPVLARIEGVCVGGGLEIAAQCDLRIAAESARFGVPIGKLGFPMAPDEMRGLL
DLVGRAVTLAILLEGRVFDAAEALRLGLVTRTVPAAELDQAVQRSVAAILGGAPQAARLNKRQARRLCAGAPLGEDEYLD
FFSYAESRDHREGVRAFLAGTAPTFTGD
>SEQF2266_AEE67345.1 hypothetical protein BPTD_2033 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKYPILGAALIAATALGAAAPAQAAWPERPVTIIVPFPAGGGTDTFARPLAQQLGMQLGQSVVIDNKGGAGGTVGAAVAS
KAKPDGYTFFMGGAHHALAPSLYKNLSYDIQKDFVPVALLAQPPQVVVINTAKLPVKSLQEFIEYARKRPGDINFGTAGK
GSTHHLAGELFAMQTGIKLVDVPYQGAGPMLSALIGGQVDLAFDGLGSSAGHIRAGTIKPLAVAAPQRSPSFPDVPTAKE
AGVPNYEVSTWYALWAPAGTPQEAVDKMTAAVTKALNDPKIRETWAGNGSAIPDLTGPQFGAFVDSEVTRWAKVVKDSGV
TLD
>SEQF2266_AEE67346.1 putative superoxide dismutase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSLIALALAAMSGVAAAQSVEMSLLSPKGDDQKIGQIKYEQTDYGVLFTPDLHGLAPGVHGFHLHDKPSCAMTKVDGKD
MVGGGAGGHWDPDKTGAHKGPYDKTGHKGDLPAVYVAADGKATYPVLAPRLKVADLAGHALMIHVGGDNYSDHPAALGGG
GGRMACGVVK
>SEQF2266_AEE67347.1 hypothetical protein BPTD_2035 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIGKKHFLTVGALALAMAIHAAPVMAQQKSVAITAIVEHPALDSVRDGVQDALKQAGYESGKNLKWQYQSAQGNTGTAA
QIARKLVGDRPDVIVAIATPSAQAVVAATKDVPVVYSAVTDPVAAQLVPSMEASNTNVTGVSDLLALDKQIELIKKVVPN
AKRVGMVYNPGEANSVVVVKQMQDLLPKAGMTLVEAAAPRTVDVASAARSLIGKVDVIYTNTDNNVVSAYESLVKVGNDA
KIPLVASDTDSVKRGAIAALGINYRDLGVQTGKMVVRILKGEKPGAMPSETSSKLELYVNPGAAAKQGVTLSDALVKSAA
QVIK
>SEQF2266_AEE67348.1 putative ABC-transporter ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSAKDLHITFNAGTPIETRALRGLSLDIPNGQFVTVIGSNGAGKSTFLNAISGDLPVDTGTIRINDADVTRQPVWERAG
RVARVFQDPMAGTCEDLTIEENMALAQMRGARRGFSRAVKASMREGFRERLATLGLGLENRLADRIGLLSGGQRQAVSLL
MAALQPSRILLLDEHTAALDPRTADFVLQLTARIVAESQLTTMMVTHSMRRALDVGERTVMLHQGQVVLDVSGDERKGMD
VPDLLAMFERVRGEKLSDDALLLG
>SEQF2266_AEE67349.1 putative molybdenum-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPSLQLDGTLWLRSGDQPWGGQHRIDLLAQIEATGSISAAARAAGMSYKGAWDAIDAMNNLAGEPLVLRSAGGRGGGG
TRLTDRARRLIATFRALQAEHQRFVQHLAASGLDAAGDIDIMRRFMLKTSARNRLLGTVEAVHAGAVNDEIVLRIAGGQR
IAAVITRASTEELGLAPGTQAIALIKAQAVLLGLPGPGLRLSARNQLPGKVAEVRPGAVNSEIIVDLDGGGTLAAIITEE
SARDLALAAGMPVCALFDAASVMLGVLD
>SEQF2266_AEE67350.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQIVKLLTVSVAAGLLAGCASGPTLRSDYDHSANFAQYRTFAFMSPLGTDRAGYSSLLTERLKQATRGQLEMRGYTYDES
KPDLLVNFNGKLQEKTQVTPAPPPMGPYYGYRAGFYGGWPGYGWGDDVYQYTEGTLNIDLIDARRRQLVWEGVATGEVND
LDKAQSAASVEQGVAQIFSKYPFRAGNGQPQTPPKP
>SEQF2266_AEE67351.1 hypothetical protein BPTD_2040 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKRKARRGAGMLDYETVALVLQGGGALGAYQAGVYEGLHAAGIRPNWLAGISIGGINAAIIAGAPVDERVGRLRGFWEA
ICRPTGFAGLPWGDAWAALFANAPFGFGSNQSNGQLAAFNALTRGQPGFFEPRFPPPYLVQGGGAAATSFYDTTPLLQTL
RDYVDFDLLNRGDVRVSLGAVNVRTGNFAYFDSRETVIRPEHVMASGALPPGFPAIEIDGEFYWDGGLVSNTPLTKVLAV
HPMRDTLAFQVDLWPARGPLPASLEEVAERQKDIQYSSRTRIVTDTFRRQLKLRRSLQRVLDRLPARVRSSPELAEVRRE
ACTPLVNVVNLIYEANQFERHSKDYEFNTESMREHWRFGLADIERTLAQPGVLDKPSPDESFVTHDIHRADA
>SEQF2266_AEE67352.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLRRSASFPAAKPSAGAQPWELRYQAWVLVTPAGAIVHLSAAERICMLGLLAHPRRELTRAALVQSLPGLGAGAINVVI
SRLRRKVGETGEVLPLRTVHGMGYVFLAGLRSDTAPPQATPAAG
>SEQF2266_AEE67353.1 putative efflux system inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFSPQRVSAFGLVATLSVLLAACGEKPQFNPGMPQVSVITVQPQRAAVVSELPGRVDAVRDAQIRARVTGIVQKIAFEQ
GGDVQADQLLFKIDPAPYQAAYDQATAQLKQAQADLFSAKLLAERYAPLVKANAVSKQEYDNAVARYRQADASVAAAKAN
LTNAKINLGYTDVTSPIKGRIGKPLVTEGALVEATSATQMATVQQLDPIYVDFTQSTADLAALRAFAAGKLQQVGKDAVK
VQVVLEDGSIYPEAGKLLFTGVTVDPTTGQVNLRAEVPNPDNILLPGMYVRVRVDQGVDDKALLVPQQALQRTADGMQSL
MLVKDNKVEQVPVTTGSVIHNQWVINSGLAAGDVVVVEGFQKIRPGAPVQASPWNKGGAAPAGQQPAPGQQAPAQQPAKQ
QPAKQEPAKQEPAKQEPAKQEPAKQEPAKQEPAKQEPAKQAPAAGQQS
>SEQF2266_AEE67354.1 putative efflux system transmembrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPQFFIDRPIFAWVVALFILLTGILAIPNMPVSQYPDVAPPAITITATYPGASAKEVAESVTSIIEDQLNGAKGLLYYES
VSDSYGQSQITATFAPGTDPDLAQVDVQNRVSNVTAQLPVAVMQQGLQYEQTSAGFLMIVTLSSTDGTLDQTALADYITR
NVKNPVSRVPGVGQFQLFAAPRAMRIWVDPDKLVGFNLSMAEVNQAISQQNVLISAGSIGAPPNPDSQRATATVIVNGQL
STIEGFGQIVLRANTDGSKVLLRDVARIEVGADNYQFGARLNGKPTAAFAIVLSPDANALATAEGVRQQMASLSQYFPSN
IRYDIPYDTAPYVKVSIEQVIHTLVEAMVLVFLVMFLFLQNVRYTLIPALVVPVAMLGAFVVMLALGFSINVLTMFAMVL
AIGILVDDAIVVVENVERIMASEGLSPKEATKKAMPQISGAIVGITLVLVTVFLPLAFMTGSVGVIYRQFSVAMAVSIFF
SAFLALSFTPALCATILKPIPKGHHQEKKGFFGWFNRKFDATTHNYQNWVSRILHKGGRMMLAFALLVVLLGWLYMRLPS
SFLPEEDQGYVVSNIELPTGASANRTIEVIEEVENYFRNIPAVENVITVQGYSFNGNGLNAAIAFTTLKDFSERKSRADS
AGAIAFTAFSKQLMGIHDAQVFTLVPPAISSLGNASGFDFRLQDRGGAGTEALGAATAELMGMAAKSPVLSQVRITGLGP
GSQLSLTIDRDKAAALGVNFDEAATLISTAVGSAFLNKFPNMGRMQNIWVQADQQYRMQVEDLLKLNARNNQGGMVPLST
FVSAKWVQGPVQVVRYNSYESVRIGGDAAAGYTTGEAMQEMQDLVARLPQGFGYEWNGLSYQERLAGNQAPILMGLALLV
VFLVLAALYESWAIPLSVMLVVPLGMLGAVALVTVLGMSNDVYFQVGMVTVIGLAAKNAILIVEFAKDQYARGQGLYESA
VEAARLRFRPILMTSLAFILGVVPLAIATGAGAASQRAVGIGVLGGMLAATPFAVIFVPTFFVVVLGLFKTRPRLLGAEL
RAFEEEQAAKRAAEQQQPQDGAATPAPQTGGQENKE
>SEQF2266_AEE67355.1 pyridoxine 5-phosphate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIELGVNIDHVATLRQQRHTAYPDPVQAALRAEDAGADLITLHLREDRRHIQDADVYAIRPLLRTRMNLECAVTPEMLEI
ACAVKPSDVCLVPEKRTELTTEGGLDVAGAQAAVTDAVQLLAEAGIRVSLFIDPDARQIEAAARAGAPVIELHTGAYAEA
RDDAAVQAELARVRAAVAEGLRHGLRVNAGHGLHYGNVQAVAALDGIAELNIGHAIVAQSIFDGWDKAVRDMKALMVQAR
LAAVRGHA
>SEQF2266_AEE67356.1 4-phosphopantetheinyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSVSAAGATPPASPGCIAGIGMDLLRIERIERALARHGDRFAQKILGPKELAKFQARRRRDPARGVRFLATRFAAKEAF
SKAIGLGMRMPMSWRRVQTLNAPGGRPVLVIGAELADWFDARFGAAHVSITDESDMAAAYVIVERKPAPDGRP
>SEQF2266_AEE67357.1 beta-hexosaminidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSKKKTKPVLPPGPVMVDVAGTTLTKDEKRRLRNPLVGGVILFARNFTDRRQLCALTRAIHKARKEPLLIAVDHEGGRV
QRFRDDGFTALPPMQELGKLWDRDPLAAMRLATEAGYVLAAELRACGVDLSFTPVLDLDYGVSKVIGNRAFHHDARVVTM
LSRALTQGLALAGMAACGKHFPGHGFVGADSHHEIPVDPRPLARILKDDAAPYAWLGDLVMPAVMPAHVIYPKVDAQPAG
FSRRWVSEILRERLGYDGVVFSDDLTMEGASVAGDILARAEAALGAGCDMVLVCRPDLADELLDRLQVQHPAASVERIRR
LLPRFAAPDWDTLQNDSRYQHARRLQSQIVSG
>SEQF2266_AEE67358.1 excinuclease ABC subunit C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDDFNLKSFLADLPHLPGVYRHLDAAGEAMYVGKARDLKKRVSSYFQKNLASPRIAQMVAKVASVDVTVTRSEAEALLL
ENNLIKSLRPRYNILFRDDKSYPYLLITGHAWPRIAYYRGATSKRGQYFGPYPNSWAVRETIQILQKVFRLRTCEDTVFA
NRSRPCLLHQIGRCSAPCVGVIEAEDYAHDVQRAVRFLNGEAREVMDEIEARMLQASTELRFEEAAVLRDQMGSLSKVLH
QQTMENVGGDDTDVIAVASAGGKICVNLAMVRGGRHLGDKPFFPTHAEGEQPAQVLEAFVAQHYADGAMPPVLVCSHALP
DSGLVGLLAEQGGTRVARVLTRPQGVRRSWLEQAQKNAEMALARALTESGARAGRTLALAEALDLDTDEESLDALRIECF
DISHTAGEATQASCVVFLHHDMQPSLYRRYNIVGITPGDDYAAMRQVLTRRFGKVTDGEAPMPGLVLIDGGKGQVEVARQ
VFVELGLDIQSLVGVAKGEGRKVGLETLVFADGRPPVALGKESAALMLIAQVRDEAHRFAITGMRARRAKTRNVSRLEEI
EGIGARRRQRLLARFGGLSGVSSASIEDLASVEGISQELAVRIYDALHG
>SEQF2266_AEE67359.1 putative CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPINVPIFLTWLRIAMIPLVVGLFYLPESWMSVPMRDTFAAWAFIIAALTDWFDGWLARRWNQTSAFGAFLDPVADKLMV
CAALIVLLDLSRVDAFISLIIIGREITISALREWMAKIGASASVAVHRLGKFKTAAQMVAIPCLLYDQPLFGLSSRLIGD
VLIVVAAVLTVWSMLYYLQRAWPAIREKSQ
>SEQF2266_AEE67360.1 7-cyano-7-deazaguanine reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLSNAPLGQHVAYPSQYDPGLLFPIPRATNRASLQLGAALPFTGVDLWNAYELSWLDARGKPRVAMATFSFPADSPNIV
ESKSFKLYLNSFNQTRLPNAQALRDRLERDLAAAAGAPVGLEFISPQRFGELNMAELDGIYIDKLDIEIDTYEPAPQLLQ
CAPGDEVEETLATRLLKSNCPVTGQPDWASLQVRYRGRPIDRAALLKYVVSFRQHAEFHEHCVERIFGDIMRACQPRQLT
VYARYTRRGGLDINPWRSNFESAPPADVRTARQ
>SEQF2266_AEE67361.1 isocitrate lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNRETEIRNLQKDWAENTRWQGIKRAYSAEDVIRLRGSVAVEHSLARRGATRLWDSLHSEPFVNSLGALTGNQAMQQVK
AGLKAIYLSGWQVAGDANLAGEMYPDQSLYPANSVPQVVRRINNALARCDQIQWMEGKNPGDQDYIDYYAPIVADAEAGF
GGVLNAFELMKAMIEAGAAGVHFEDQLASVKKCGHMGGKVLVPTREAVSKLVSARLVADVMGTPTILLARTDADAADLVT
SDVDENDRPFITGERTVEGFFRTRAGLDQAISRGLAYAPYADLIWCETSTPNLEYARKFAEAVHRQFPGKLLAYNCSPSF
NWKKNLDDGTIAKFQRELGAMGYKFQFITLAGFHALNYGMFELAHGYARRQMSAFVELQQKEFAAAELGFTAVKHQREVG
TGYFDAVTQTIEGGQSSTTALTGSTEEVQFEQGGQAVKAA
>SEQF2266_AEE67362.1 hypothetical protein BPTD_2053 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MACFMALVLARFGFGFCMLLAALMLLVAATLLATRLVGWAVRAFALERSQALASGVAIFLLVALALWGCHAVGEILYGAI
GATALVGGAPHWLAGNSHVSAAALMGATTAAAMLAGGPAFWRWLRARRAAAAEQPAPRKAAPPKGAKPAARAAKAAAKTQ
IAPRGQRIPWLGWTAFFLLFIGAAVLAFAYIVSPIEAGARCELSIGCIRPG
>SEQF2266_AEE67363.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWQRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67364.1 putative ABC-transporter permease component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEFMQFIFSGVTVGAVYALVALGFAIIFNATGVVNFAQGEFVMLGGMITVFAHGAGLALPLAALLAIAVTAATGVALNR
LAIEPARGAPVVSLIIITIGASIFIRGAVQSLFGKQIHSLPAFSGDDPIHVLGATILSQSLWMIGGAVAVFIVLWLFFTR
TLIGRAVLATSNNRLAARLVGINTRFIMTLSFALSAAIGALAGVLITPITLTSYDVDLTLALKGFAAAMLGGMGSPKGAL
AGGILLGLLESLTAGYLSSQYKDAAAFLTILAVLFFMPQGLFGHKSTDRV
>SEQF2266_AEE67365.1 putative ABC-transporter substrate-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTSKAIVAGLLALGCALPAAAEIRLGASVSATGPAGILGDPEARTLELLVQELNARGGVKGEKIKLVLYDDGGDANKAR
TFATRLVEDDEVQAIIGGTTTGTSMSILSVAEEAKVPFISLAGAIDIIDPVKPYTFKTPHTDRMACQKVFADMRKNGWTK
VALIGSTDGFGASMQAQCKAVAGQYGIELVGSETYEPKDADMTAQLTKIRGIPGVQAVLNPGFGQSAAVLARNYRQLGMS
LPFYASHGVASQGYIDLAGADVVEGFRLPGTALLVADLLPASDPQAAPSIAYKKAFEAKTGAPVGTFGGYAHDAFLILVD
ALNRADSTKPTAIRDAIEKTSKLAGTTGVYTFSPTNHLGLDLSAFRVLEIRGGKWKVVD
>SEQF2266_AEE67366.1 putative dioxygenase hydroxylase component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFIRNEIDYRALIEPTRINSRLYVDPEIFQEELDKIWHRTWVYVGHVSEVPNKNDYVTKSIGTTPVLLLRDRDGEIRLL
LNKCPHRGNQLCAYKEGNRSTFTCPYHSWTFSNTGDLMGYALADGYEGASKAGVGLGKVARIGIYRGFVFGSFAETGPSL
DEHLGGAKAAIDQLCDNSPNGELDLRAGFLQHRAKANWKFMLENETDGYHPGFVHGSIFQVTNSPIANLYGKDSTALTRD
YGNGHTEFDLRPEWRRIDKPLYWFGSSVERMADYAVAMDQAYGAERARQIMIDGSPHTMIFPNLFIAEIQIFVLQPVSVE
ETIQHVTAVQFKDAPDINRRLRQQTMGSVGPAGLLLADDTEMYERNHRGAKIRDPEWLMLTRGLHRERKDENGYTVGHST
DEVPQRGIWRHYFKLMQE
>SEQF2266_AEE67367.1 putative dioxygenase component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTARPETRPAADDLQALDELTLHHRVSQFLYHEARLQDTHDYQGWESLWEDDAIYWIPANGDDIDPEQKMSVIYDNRSRI
RVRIEQLLTGRRHTQTPRSALARLISNIEIVDVAGQEVTALANVLIYEDNLRGETHWAARNEYRLRLVDGAFRLVRKKIA
LVNSAKPIFTLSFLV
>SEQF2266_AEE67368.1 enoyl-CoA hydratase/isomerase-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTANPETWIGEGPVLLDYADHVARITLNRPDAANGMNIEFMKAFHEAVMRCHREPDVRVVLLRGAGKHFCAGGDVREFA
SKGEGLGDFLREVTAWLQMAIGALIRLDAVVVAQVQGYAAGGGGLGLVCAADIVVAAQGARFLAGATRVGMAPDAGSSVI
LPHLIGFRRAMEMMLSNRTVGADEALEMGLVNQVVADAELDESAARLAATYAAGAPLAQAATKRLLWNTLQVERALPEEA
RTVSTLSATADSREGLAAVIGKRQPVFRRH
>SEQF2266_AEE67369.1 putative 3-oxoacyl-CoA or-ACP reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRHALVTGGANGIGAATVAQLCRDGLRVTFCDRDAQAGASVAEATGARFVALDATDAEAVAGFCAGAAPFDILVNNVGA
DQHAFFSRTTPQDWRALLAVNLESAFAFTLGVLPGMQAARFGRIVNVSSEAGRLGSRGGAVYAAAKAGLLGFTRSIAREN
ARYGVTANAVLPGPVDTPMLARAVDVAGAQMRADLEALTLLRRLGRPEEVAAAIAFLCSEAAGFITGEALGVSGGMGCGA
>SEQF2266_AEE67370.1 putative ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTIIFIASNEARHIVQADDGLSLMECARRANVPGIAAECGGACTCATCHVHVGQEWMQAVGEPGDMERDMLDFANDVRA
ESRLSCQITVAPALEGLTVRVAPQ
>SEQF2266_AEE67371.1 putative fatty-acyl-CoA racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAPALQGLRIIEMVGLGPAPFAAMMLADHGADVVRVHAAHRKGDFPLLDSRFDVLARGRRSLALDLRAPGASDLLLELVG
AADGLIEGFRPGVMERMGLAPEECLRRQPRLVYGRMTGWGQQGPLARQAGHDLNYLGLTGALHAIGPADRPPSVPLNYVA
DFGGGMLLAFGMLAALLAVRGGAPGQVVDAAMVDGAGLLAAMFWGFRAGGGWSDRREGNLLDGGAYFYATYACVDGRFLA
VACVERRFHDLLVERLGLDPAVYTHDRDPAQWPALRARLAALFATRPRDHWAALFEDSDACVTPVLDWREAAHHPHAAAR
AGYIDVEGVTQPAPAPRLSATPARQPAAAPAVGAHLVEVLHEWGLAPERVAGALDSGLIVQA
>SEQF2266_AEE67372.1 putative esterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTARDPLAAIRARLAEVTACWQAAESLAQIRASFADYLAEVGPRGAAMARPRPQPLAPALAGAWIGQGARRALYCHGGGF
QIGGIASHASLIARLAEAGQARILAVEYRLAPEHRYPAAIDDAFAAYQWLLANGGAPAAIIGDSAGGALALQTAQRARDA
GLPLPRSLVLLSPWLDLSMQGRSYVELAEQDIFSKPAQLRAMARSYLGHLGPPPASPLWDDLSGLPPIVVHAGAHDITLD
DSHTLAARVRAAGGQVQLQVFPGMCHHFQIYEALAEAQESIDALGRHLRQD
>SEQF2266_AEE67373.1 putative acyl-CoA ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLHPEIELLDRDGILKIQRERLARLGQRLQHSPQWREHFASVGMTPGDLASPDAFEHLPFLQKADLRQQYPYPFLTVPLE
DVERFVATSGTTGLPVMFGLTRRDLHELLPSQTARLLAAAGVRRGARAYQGYGYGLWIGGLALDQGFKAMDCVNFPLGPG
RGDLAARWMRDHAYEVASMSPLWLMSLAQAARAQGINPKTDWALRTAILGGQSVSAEFRAQLEAEMPEGFVSHNIYGTTE
AGGPILAISTPYTHADDELHLINEDTVLTEILDPVTLKPVSEGEVGEIVITTLTKEASPVIRWRTHDLVRLSSHPYDCPS
GRRGMRKIGRIIGRSDDMIKFKGVIVFPSQIEDVITGVAGVVKEAWQIYIDKECMTIGTMTVAIEASAQAGRPAEQLSNE
VGREIHARLGMKVCVECHPEGTLPRYEAKAVRVLHRPEA
>SEQF2266_AEE67374.1 acetyl-CoA acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATGIKDRVAILAMGCSRFGERWDVGQEELMVEAYAEALASAGIEPRAIEAAWYSSHYDDIGAGKAGTPMAMALRLPDIG
VTRVENFCAGGTEAFRGAVYAVASGAADIALALGVEKLKDTGFAGLPLASRGTLAPMYLPTHSNPGNFAQLARAYQARHG
VAREDLKAAMAHTSMKSHANALHNPKAHLRKAISREQAAGAPLVADPIGLFDCCPVSDGAACAIVTTPEIARSLNRGPLV
LVKAIQLATSNGWELQQSDWDGSYVHTTRVAARKAYAEAGIDDPRAQLSLTELHDCFSITELVTLEDIGLAEPGTAWRGM
LDGRFDADGALPCQIDGGRKCFGHPVGASGLRMLYEAWLQLSGRAGARQLPAPSLALTHNLGGAPAQNVCSITILGAA
>SEQF2266_AEE67375.1 hypothetical protein BPTD_2067 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDVLPGRPRARRRRRRRQSRANILAIGVHLPRLRLSRGAMANALGWLSGGAGAGKGSRTLAYWDEDSVTMAVAAARHALA
RQAAPAIDALQFASTTPPFAEPQNAAFVRAALRLPATTLTQDVHGTPRAGLLALHMALESGTRTLVAAADLPTALPGSTA
EARAGDGGAAVLTGDEPGLLRYLGGASLSAPFTDRYRAAGHDYPQEWEERWLREAGYLELVHDAIGRALQAASLRPEQVD
HFVLPCPVPGVAAAVAAKAGLGQARLASALAENCGDTGAAHAFVMLGRALEDAAPGQKVLVAQFGQGATALLFEADEAVA
GLAAPVSPALRDGLAEDNYMKLLAFRGRIAWDRGLRGRFLVNEALSTAWRNADALLDFVGGRCRETGQVQFPPTRLAATG
GFHLDTQEPWPLADRGGRIATFTADLLAFSPCPPNCYGLVDIDGGGRVLMEFTDPQASQLEAGAAVAFALRIKDLDPQTG
YRRYFWKALAAPTAD
>SEQF2266_AEE67376.1 lysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSKRFPCVSCAPWSPSGDTASFTGAAEQLGMSQPSVSHLIRRLEAEVGQTLVVRGREVTLTRQGQALADIARRAILSID
GAVRESRDQSALKSGSVSVAVGHVSAATLLPRILVAFNQRHPNIELIVVDCVVEQIRNKLLSHEADVGLGAVVGSDDSRL
STELLWDGGVSLFMRDDHYLADREAIDAAILAELPCIQLNPNAPPWLVISRLLVANGIHPRVDQRVVLVSTAVGMIQAGM
GVAMLPHAAAAQAPRGVRAVPIRNPFLSWPISLVRLSNHPLSPAAQAFAAIARDVLRRF
>SEQF2266_AEE67377.1 hypothetical protein BPTD_2070 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQACHPIRRWRPTTNKGKCMKNVLWMALLASVLSEGALAAEFPTHPVTLVVPLAAGSTADILARAIQPGLSKALGQTVVV
ENRPGAGGQLAMSYVAKQAADGYTIVMGSNGTWAINLGLYEKLPYRPVEDFAPVAYLAGGSNILIVKPSSPYTSVAALIA
AMKAAPGKLTYSSGGNGTTHHLSSELLKSLTDTQAMHIPYGGAPQGVSAVMAGETDFGFYNTPSVSSMVKERKLRALAAT
GTIRTPMLPEVPTMMEAGVAGYVMSVDFGLLAPAGTPDDVVLKLNRAANAAMAQPKLQETLKNYGFEVFEQGSPGDMAKR
VNADIDKWVPIVRQAKAKVD
>SEQF2266_AEE67378.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE67379.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVSEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67380.1 hypothetical protein BPTD_2073 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MITPPDHPPRIAIQYCTQCQWLLRAAWMAQELLSTFGADLGEVALVPGTGGVFRIHYNGAPLWDREVDGGFPEAKVLKQR
VRDHLDPGRPLGHIDGRPKP
>SEQF2266_AEE67381.1 hypothetical protein BPTD_2074 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGAPDLCTEEDITQLVHQFYAEVRRDAELGPIFNTHVDDWDVHLAKLVDFWSSILRGTGRFRGTPMPRHVALPGLHAGLF
ERWLRLFRATAAAQPNQAMAEQACLMAGRIAQSLWYGYQLHRSPDQAPTDLAHG
>SEQF2266_AEE67382.1 hypothetical protein BPTD_2075 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAELLQIDEPAAARAAPQWRAFLELGFRPLYLVGAAWGALSVALWIGAPQWLGGAMAGVIWHAHEMLWGFIGAIAVGFLL
TAAATWTGVNPLRGAPLAALAALWLAARAAFLLPGMAAFWTGVACELLFFAWAAAALGRAIYRRGASRRNDGVPLLVLGL
GAADALYLLAARAGDYPLLLQRFNAGLLCMAVIALLIARRIIPFFAMRAIAGLQIPMHTRSGQWQLAAGLVAVAATLAQA
GALTAVALAAAGLIALAQWLSWRPWATRGVPLLWILYAGYLGLAAGLLVAAASAAGGIARAAWPAHVIGMAGFGLLIIGI
ITRTALGHLGRPLRTDRLMLACYLLVIGAAALRLAALWPGPHTLAALHGATAAWVLAFVLYLWRFAPLLVRPRLRAPTAA
ATPVRSRP
>SEQF2266_AEE67383.1 hypothetical protein BPTD_2076 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTYPILLALHLLAAFVFIGTVFFEVLILESVRRQVPREAMNAVERGIGNRARAIMPWVLLALFGAGIGMAWQHRGALEQP
LASSFGLLLSLKIVLALSVLGHFAAAMRWRRRGQLRGRRSRRLHLSVFCHVVAIVLLAKGMYYIDALR
>SEQF2266_AEE67384.1 putative exodeoxyribonuclease III [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLATWNVNSLNVRLPQVLDWLAANPVDALCIQELKLTDDKFPLDAFTEAGYHAAWAGQKTYNGVAIISREPGFALVRNN
PRYEDPQQRILAVTLPSPAGDVRVICAYCPNGQSVDSDKYVYKLAWFDGLRDWLEEEMRTYPRLAILGDYNVAPADADVH
NPEKWEGQVLVSEPERAAFRALLDLGLTDSFRLFEQPEKSFSWWDYRQFAFRRNAGLRIDHVLLSDALKPHCVACVIDKA
PRANEQPSDHAPVIATLAFD
>SEQF2266_AEE67385.1 hypothetical protein BPTD_2078 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHILVAGFQHETNTFAPSKAGYDNFLRGEGFPALVRGDDLLALRAVNIPAGGFLNAALADGHSVHPVLWAGASPSAHVTR
DAFERIAGEIEAAARAGRYDAVYLDLHGAMVTEHHDDGEGELLRRLRDAVGPATPIVASLDLHANVTRAMLAHASALVAY
RTYPHVDMADTGARAAALLQARAQAGKHWHGAARRLPFLIPINGMCTQLEPARGVYALLAELERSEPGIASLSCALGFPA
ADFPECGPVVWAHGPDRDAVERAVQTLADRIAGLEAQWAPDFLAPDEAIRQARQLAQGARRPVVIADTQDNPGAGGDANT
TGMLRALIDADADNAAIGLMCDPQAVAQALAAGVGKCVRLRLGGQSGVAGDAPCEAEFIVEHQSDGKTRYDGPMMHGMAA
DLGPTVCLRHRGVRVIVSSNKSQTLDRNLIRLGGIDPEDLAILVVKSSVHFRADFEPIAHAVLIAKAPGPMQADPADLPW
TRLAPGMRTRPRGRPFVPARP
>SEQF2266_AEE67386.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMQHYYERDGVRLSYYLDDYTDPWTQAPTLLLLLHGAMANAQRFYSWVPGLSRDYRVVRADLRGHGLSDVPPADKPLDLQ
VLTEDILALLDHLGCERVHLAGNSAGGYVGQHLAMQHPQRIETLALFGSAPGLRNSQASTWLERVAEKGLRQFLADTIDD
RFPPELVGTPRCEQFLDALSDHDMAYIGRFVGYMAQQEWGDQLHRITCPTLVVIPGAGRIGAMDAYQPMRDHLKRAEILV
YEGERHSICEYLPQRCVADLRSFLARHGGPAWP
>SEQF2266_AEE67387.1 hypothetical protein BPTD_2081 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAKQSLVCLTFDFDAISVWLARGMDSPTPVSRGEFCAVAADRVLDLLERLGLPSTWFIPGHTLASYPEHCRRVHEAGHE
IGHHGWTHVAPNLMTREEELDGLVRANEAIRALTGRVARGYRSPSWDLSPHTLALLLEHGFDYDSSMMGHDYQPYPVRQG
DSFPLDEPAVFGAPTRLIEVPVSWSLDDYPHFEFVRAGQSVIPGLMNANSVMDNWIEDFLYLKENFDWGVITYTFHPFVI
GRGHRMRMLERLLRRLIDEGATFVRMEEAVDAYRQRQALAAGAA
>SEQF2266_AEE67388.1 hypothetical protein BPTD_2082 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIKSMLLAVLAVSMAGVSAAALSQGFPERALRVVVPYPPGGTTDVLVRLLQKPVADAAGQSVVVDNRPGGASVIGTSHV
AQAAPDGYTVLGGDLSMLVNPSLMKDLPYDTLRDFRGVTMLARAPLVLLVHPSVPANTLDELIALAKAKPGTLNFASGGY
GTSTHMAGEMFRRAAGIDVVHVPYQGVAPAMSALLGGQVQMYFGGTTTGLPHIQSGKLRALAVTGEAPSPLLPEVPTFVS
RGIQGVNADTYWGVYAPARTPDAVIEKLNAYYTGALRDPAVQQRTRDLGLTLIGNSAAEHTAQMKTMIGDWGAFVKEADI
RLE
>SEQF2266_AEE67389.1 hypothetical protein BPTD_2085 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQNEDSFFGSLGAMLGAVIRAIVDGLRYVFGGLGRALGDFFGGLASALGMSPSVFNFALLVLGLLLLWTAVRAFMGRAIV
AGIFWLVLAMLLLGGLIG
>SEQF2266_AEE67390.1 glutathione reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFDFDLYVIGAGSGGVRAARFAAGYGARVAVAESRYLGGTCVNVGCVPKKLLVYGAHFHEDFEQAAGFGWNPGRPEFDW
PTLIANKNREIERLNGIYRNLLVNSGVALHEGHARIVDPHTVEINGQRHSAQHILVATGGWPFVPDIPGKEHAITSNDAF
FLPELPRRVLVVGGGYIAVEFASIFDGLGAQTVQVYRRELFLRGFDGSVREHLRDELVKKGLDLRFNTDVERIDKRADGV
LAVTLSDGSVLETDCVFYATGRRAMLDDLGLENTGVRLAESGYIEVDDEYRTSEPSILAIGDVIGRVPLTPVALAEGMAV
ARRLFRPQEYRKVDYDLIPTAVFSLPNIGTVGLTTEQALERGFRVTRYESRFRPMKLTLTQSQEKTLMKLVVDADSQKVL
GCHMVGPDAGEIVQGLAVALKAGATKQVFDDTIGIHPTAAEEFVTMRTAT
>SEQF2266_AEE67391.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPVVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE67392.1 hypothetical protein BPTD_2090 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVVRYDIPGALMSDSLVFHTDLPGLADGPWHGGELAMQERAGARERMAQLGPRVIRDYMPQQHRDFFAQLPFMLLATVD
AQGDPWASVLEGPPGFAHSPDERTLRLDAWPAGDDPARAGLAHGAGVGMLGIELSTRRRNRVNGHVAALDGQGFCVAVTQ
SFGNCPQYIQTRHARQAAPAPQPARWLAGLDAAARTLVGQADTLFVASYARQAGPHAVDVSHRGGPPGFVHLRGDTLTMP
DFSGNRFFNTLGNLLANPRAGLVFVDFARGDLLQLCGRAEVLAEAGAPAAYPGAQRLWRVHVERAVRRPAALGLRAGFGE
YAAQLAAVGQWAGEPPA
>SEQF2266_AEE67393.1 lysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKFQEVSLFLAVAEARSFAAAGRRLGLSASTVTRAVAALEARLGILLLVRTTRHVRLTDAGEQFAHDCRAVLDSLAQAE
EAAAGGRVQPRGELSVTAPALFGELHVMPAIVDYLRQHRQVRLRALLVDRVVRLLDEGVDVAVRIGRLPDSSLTAIHVGD
VRRIVCAAPDFLARAGVPSHPDMLPRYCTVSVVMEGQMDRWRFVCDGHARDLDVQAQLTVTSSQAAVRAAVQGWGLAQVV
SYQAAGALREGALQVVLREFEPPPLPVHVVYPEGRKGAAKVRSFVEFCVERLRAELGELPA
>SEQF2266_AEE67394.1 hypothetical protein BPTD_2092 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIWKLIPIALLAGLTACASGTRTDSSPPASSQTSSSAAPGSATTPSGPDCDAQPVQNLVGQKYSDSVGNDALRRSNSGSM
RLLKPGQVMTMEYNARRLNIILEGNGSISALRCG
>SEQF2266_AEE67395.1 putative oxidoreductase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTLNINGKDTVLDAPGEMPLLWALRDVADLTGTKYGCGMALCGACTVHADGQPIRACITPVQAVAGRRIVTIEGVAADR
TGQAVQQAWRELDVAQCGYCQSGQIMSAAALLRANPAPTDRDIDDAMNGNICRCATYVRIRAAIHAAAAALA
>SEQF2266_AEE67396.1 putative exported oxidoreductase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIAIQNLSRRRFVQGAGGLLLGLSLPPLARRAMAAGPQAGDGFAANAFVRIGADGRVTVLAKHLEMGQGAYTGLATLLA
EELDADWRQVRVEGAPADSARYGNQALGGLQGTGGSTAMFDSWEPMRRAGATARAMLVQAAAQRWQVPADTIEVAEGVLS
HPASGRRAGFGELAEAAARSPVPEDVPLKDPARFRLIGKHRLPHVDSAAKSDGSALYTQDMKLPGMLVAVVAHAPRLGAA
VARVDDAAARAVPGVRAVVRFGGAALRHAGVAVLATNTWAARAGRDALRIEWDEGPAYRQGSADILARYREAVGRPGSMA
ARKGDIDAAFAGAAKVIEAEYTYPYLAHAAMEPLNCLVRLDDERCEIWNGEQFQTADQRAIAQYLGMPAERITLTQLYAG
GSFGRRASSHADYLLEAVAIARTARAQGLNAPVKLVWMREDDMRAGYYRPLNLHRARLALGADGALQAVHVRMAGQSILL
GTPLADWVRDGVDPVSVEGLSDLAYAVPNLQVELHTPTDVPVPVLWYRSVGHTHTAFSAETLIDEAAVAAGQDPVAYRLA
LLAAHPRHREVLQLAAVRAGWREPLAAGAPGTRRGRGVAVHESFRSVMAQVVEVTIAADGALKVDRVVCAAVHCGLAVNP
DVVRAQMEGGIGFALSTALHGAITLKDGAVEQSNFHDYPVLRLAEMPAVEVHIAPSTQPPTGVGEPGVPPLAPALANAIA
QATGQRLRTLPLGTTVKA
>SEQF2266_AEE67397.1 hypothetical protein BPTD_2095 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSIAMQAADLYVLQTAQSWLDAGQAAVLLTVARTWGSSPRPPGAMMAIRADGAVAGSVSGGCIEDDLIDQIRQRGIAAL
CPGARPALATYGVDGEQARRFGLPCGGTLQLVLEPLGAHSRLADLLARLRAHQTVRRSVRLADGAVTLEPAAADAEPRLD
GAGFASVLGPRHRLLVVGAGQLSRYLCEMAIALDFDVTVSDPRQEYRAGWQVEGVALTTAMPDDMVIAARPDARTAVIAL
THDPKLDDLALIDALQTPAFYVGALGSRANHARRVARLREHFGLTPAQLARLRGPAGIYIGSRTPPEIALSIMAEIVAGK
NGAPLPPAASVAAGKARQPGGAGVIQAGLCATL
>SEQF2266_AEE67398.1 AraC family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSALPDSPSASPPPRHDELASLIERHTPADGSTATALPGLNFYRSSSPTELNVSFYRPSLALLAQGAKRVQLGDDVYEYD
TSHYLLTSFDLPVASRVTLATPGTPYLCFALDLDPHRIAGLISELGAPPAGQPLRRGLTLARLTEPLLDAVLRLARLLDT
PADIPVLAPLIEREIHYRLLSGPMGGRLRHIARAEGTALQIARAIDWLRRHYAQPLRVEHLATTVNMSVSSLHHHFKAVT
ALSPLQYQKQLRLHEAHRLMVAETLDAGAAAHRVGYESASQFSREYSRLCGAPPLRDAARLRGTAPADAQSPGLARASAS
ATVS
>SEQF2266_AEE67399.1 hypothetical protein BPTD_2097 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGTMTIRIDEELRAYIDPLTPDEYAALEQSLLAEGCRDALVLWGDLLVDGHNRHAICSKHGIAFNTVQNTRLQSMDDVR
LWMIDNHLGRRSVSDFQRGVLALRKKEILESRRQAGEGDAAPAGGDGPAPLTRQTLARQARLSSATLGQIEKIRQQAAPE
LVRAVQSGEISINAAAAVATLPAPQQAAAAAGGRGELRAAARQVREARLPVRRAPEAEPAPAAELRVVDDYPAEVARLDR
LVAQLAEERDALKKKVVQLTVALAEARAKPGD
>SEQF2266_AEE67400.1 hypothetical protein BPTD_2098 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAEIPLFPLSNALFPAGVLRLRVFEIRYLDMVRRCIADGSEFGVVVLEQGTEVRRPDGREVLARAGTMARIDHWEAPMPA
LLELACTGTGRFRLHACTQGKYGLWTGQAEPVPDDAPLEVPPELARSASALGRLIARLQREGVPPHIMPMAAPFRLDDCG
WVADRWAEMLSLPPADKARLLLLPPLDRLREIDAVLAADGHA
>SEQF2266_AEE67401.1 hypothetical protein BPTD_2099 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFDGDCAEVMRLYERILGGKLDALITYGESPPEMPCEPQDRDLIMHARLRLDDQLLMASDSNSQCPYEGKKGFSLSLVYP
TVSDAQRIFNALAEGGQVTMPLQKTFWAEIFGVLVDRHGTAWMISGGQMNS
>SEQF2266_AEE67402.1 putative transmembrane efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHTLDERKRWLALMVLCLGVLMIVLDTTIVNVALPSIKADLGFTEASLVWVVNAYMLTFGCFLLLGGRLGDLLGQRRMF
LAGLTLFTLASLACGMAQGQAMLVAARAVQGLGGAVVSAVALSLIMTLFTEPAERARAMGVYGFVCAGGGSIGVLLGGLL
TSSLSWHWIFLVNLPIGALVYALCLPLLPASQGPTGHPRLDLAGAAAITASLMLAVYAVVNGNEAGWTSPQSLGLLALAV
ALLALFLRIEARVPAPLMPLSLFALRNVATANIVGVLWAAAMFAWFFISALYMQLVLGYTAMQVGLGFLPANIIMAAFSL
GLSARLVMRFDIRAPLVCGLLVAALGLALFARAPVAGSFAVDVLPGMLLLGLGAGIAFNPVLLAAMSDVDPSEAGLASGV
VNTSFMMGGALGLAVLASLAAGRSASLRAGGADVLTALNGGYHAAFAVGAVFAALAALLAGVLLRRPQPGASAPAADAH
>SEQF2266_AEE67403.1 hypothetical protein BPTD_2101 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHYHGSCHCGTIRFDVEGELTGAMSCNCSICRRKGALLWFVPRGHLRLATPDEQIATYTFNRHLIKHRFCPTCGIHTHGE
GVDQQGRAMAAINIRCLDDVDLDAVAVHQYDGRAA
>SEQF2266_AEE67404.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67405.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67406.1 putative ABC-transporter membrane-spanning ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGYWGPAFARETPTMRMLWTYLRPHGGLALLALLLAAASQVLALIDPIIFGRIIDEYAIGRAGKTGDQLLAGVLGLLAL
ALAVAILSRLAKALQEYVTRLVVQKLGTQIFNDGLRQVMRLRFQEFEELRSGETLSLLQKVRSDSERFINAFINTAFAAG
VGVAFLCWYSVTRHWLLVPVFFVGVLLLGGLTGLLSRQIRSQQRSIMRETNRNSGFITESLRNIELIKSLGLTYPEIRRL
QAQTQQIFALEMQKIKRIRLLSFLQGMILSVLKLSVLFALLWLILRDVLSTGELIAMQFISVAIFAPLQELGNLILAYRE
ADASLNHYAALMARPVERNPESAQDSGPIQRVRFGEVRFRHQGAAENALDGVSFEARLGDTVAFVGPSGSGKSTLFKLLV
GLYAPDHGEVYYNDVSTRDLRFNPTRRQIGFVTQETHLFSGTLRENMQLVKPDVTDEEIVAAMRQASCANVLARSPAGLD
TTIGEGGVKLSGGERQRLSIARALVRQPRLLIFDEATSALDSLTEEQITQTIRDVSRRAGQITILIAHRLSTIMHADTIF
VLEKGRVVEQGSHAELLAGKGLYYAMWRQQIGERPAVRAPEPQSEPDTAGRGPEAGVSLL
>SEQF2266_AEE67407.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSRRLQLAGAALMMAAACGQAVAGGGHHGHHGYYGGYGHSHGSSSDGWWIAGALALVAAGTYLAVSSQPSYAPAAQYSA
GGITYTTPGGYAASPYDSTVYDPPSYDPPTAYDDAGYAPAGHGQPAYDDGTVAGYPVAPQGAGIARTASRQPTGEAACRR
EAMNQSGYDPATPSAWTTGVSVDSYQRALSACLAGRG
>SEQF2266_AEE67408.1 hypothetical protein BPTD_2107 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQPSSLAADLRGAWHAQAQSHPLITLGLAASAAGVVLLLVAGIVNALTGENRVHVGYAVLGGTAGFAATALGALMALGL
RAISARTQDAMLGFAAGMMLAASAFSLILPGLDAAGTIVGPGPAAAAVVALGLGLGVLLMLGLDYFTPHEHERTGHQGPE
AARVNRVWLFVLTIILHNLPEGMAIGVSFATGDLRIGLPLTSAIAIQDIPEGLAVALALRAVGLPIGRAVLVAVASGLME
PLGALVGVGISSGFALAYPISMGLAAGAMIFVVSHEVIPETHRNGHETIATVGLMAGFAVMMFLDTALG
>SEQF2266_AEE67409.1 hypothetical protein BPTD_2108 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHTRTRHATAPLPAMPTSLPARAYALPLVLILPLLLAACSDAVQTQYRDLDEARVAGAIQRGWLPAWLPARTGAITEAHD
LDTNRRAARFVLPDGARIEPPGCAPASGRLPSPALALPGWPASLHQDGAAGRYRLYRCADGYAAFDANHGYVWN
>SEQF2266_AEE67410.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSSTDLSAEGISQAIAAAIVSHRLPPGTRLREEALASVYKVSRTKIRAALLMLSKDKLIQIVPDKGAFVSKPDAHEARE
VYAVRRILEAALAREFVACAAPQDYERLEQHLHQEREAIHEGDVQRRNQLLAGFHLQLAEIVGNSVLTAMLHELLARTAV
ITVMYQSAHDASCSSQEHYAFLAAARDGDAERACALMDEHLLHLQTALDFDGAPAPNRDLVAALLS
>SEQF2266_AEE67411.1 putative sulfate transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHSVACLDLRVIALLEAKRAGLLRRAHWLPNIVSGLIVGVVALPLAMAFAIASGAKPEQGLYTAIVAGLLVSLCGGSRV
QIAGPTGAFIVILAGITAQHGVAGLQLATLMAGCILLALGAARLGAIIKYIPAPVIVGFTAGIGVIIWVGQWKDFFGLPS
PAGTHFHEKLWQLVHSLPQLHLATTALAALSLALLLLNNRLPYLRRVPGPLVALVVATTLQAALGLDGVATIGSAFGGIP
QGLPSWQWPEITVSRVIELIGPAFAIAMLGAIESLLSAVVADGMAGTRHDSNQELVGQGLANIVAPLFGGFAATGAIART
ATNIRNGGTSPLAGVVHCITLLLMVLLLAPLAENVPLAALAAILFVVAWNMSDAPHFVRMIKRAPRADVAILLVTFVLTV
FADLVVAVNIGVVIAILHFLRRMASSVQVQAQSPAELGDELGHRGYGPLPDDVLVYAVEGPLFFGAAENFERALAATHTD
PRTLIIRLRWVPFIDITGLQALEEVITDLQRRGVRVILSGANPRVKAKLHRAGLVGLAGADNVFDRFEDAVLSCRAPAAP
ATA
>SEQF2266_AEE67412.1 hypothetical protein BPTD_2111 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSPSSASPDGHGARLDAQSIRFERLLPGPIERVWAWLADADKRARWLAGGELPRQPGQTFELHFNHAALTAETAPARYA
QYDRPIVAHHTLLRCEPPRVLALTWGGAAGEAPSEVLFELSEAGEQVRLVLTHTRLADRAAMLDVAGGWHAHLAVLAGKL
AGQAPPPFWTTLAQAEQDYEQRL
>SEQF2266_AEE67413.1 ArsR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVEYQAPALDRVFHALSDPTRRAMLRRLADGEHNIRALAAPFAMSFTAASKHLKVLESAGLVSRRVQGRSHLCRIDAAPL
AAIDAWLKFYERFWNARLDMLETLLRADAASSVPSHPDQDPTP
>SEQF2266_AEE67414.1 hypothetical protein BPTD_2113 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPPARSSAAAPAQYADVHYADRPMRIEYALLAPERRDAPLLVFLHEGLGSLAMWRDWPRRVCDAAGCRGLVYSRYGYGR
STVRPLDESRPIDYLHQQAAQALPALFAALGIDARRDKPVLFGHSDGASIALLYAALCPDAVAGIAVAAPHIYVEDITVA
NIAVALRAYRETTLRDRLARYHDDVDSTFASWTDTWLDPAFRQWNIEAYLPAITCPVLAMQGVDDEYGTLEQIRGIRRLA
PQTRLLEIQDCGHSPHKDQPELVTRALAGFVGGLRRPA
>SEQF2266_AEE67415.1 hypothetical protein BPTD_2114 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQISRRFPLLARRAALALCLAGAVQAHAQEAAVQRKSDYPFAATVARLQDALRAKGMTIFAVIDHQAAAKQAELDMPPTQ
VVVYGNPKAGTPLMLAAPDFALELPLKVLVRETASGEVLVVYHPAGTREGMLGLPAGMAQQLAGAERIVDAAVRRAPAD
>SEQF2266_AEE67416.1 hypothetical protein BPTD_2115 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAKSKAQQMAAGAALAAKRGESRVSDLKGASRDMYDSMSERELEHMAGTARKGKPYHK
>SEQF2266_AEE67417.1 AraC family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLGAMKRLALLVPERANIASLENARQGFLAANGFLRERGRAPSFDVRLVAATPQVRLDHGRITVQADTVLEAVGEVDLCV
VPPIQGDPQPALQENGALIDWLAGYYKNGGEVASLCVGAALLAAGGVLDGQRAVVHWAAQSDFGRLFPAVRWVSDRVVLE
ANGIYTSGGAFSAAHLVLHLVDKYTDRETAIWCAKLFQLDWSRQSQLPFVVFVGQKTHGDGVVRQVQEHIEANYTERLTV
EQLAQRVALGRRTLERRFRHATGNSIVEYVQRIRIEAAKKQLESSRKSVAEVMYEVGYNDTKAFRDIFNKYCGMSPLMYK
ERYL
>SEQF2266_AEE67418.1 hypothetical protein BPTD_2117 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDQYVDGFLLSVPNDKLDTYRQMATKAGAIWKEHGALAYCECTGDDLDIEGMVSFKTSAAAREGETVVFAWIVYPSRAER
DRINAAVMADPRLKEQCVDGVFDCKRMAYGGFKTLVNL
>SEQF2266_AEE67419.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTTTSLIASVRRIAAFSDGARGGNPAGVHVAEVLPDAMTMQQMAAEIDYSETVFAAPAYGGWRVRYFAPEAEVPFCGHA
TIALGAVLAEQEGDGVFALTTNHANITVEGRRQGGLYSAALQSPRTRSAPLEAAVRDEALALFGYTPADLDSRLPPAYAE
AGAAHLILPLNSRERLAAMRYDLAAGRAFMKRTGVVTIAWVHAESATLLHARNAFAAGGVYEDPATGAAAAALAGHLRDS
GWLRAGAIEILQGFDMGVPARLRAEYGPEPGSSVRVAGTAHALARQPALID
>SEQF2266_AEE67420.1 lysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRNIDTALLRAFLAVHDTGSLTAAAALLHLTQSAVSQQLQRLEALFGRTLLERRRSGAALTGDGARLLGRAREMVRLND
ELMQHMTGAGCVGAVRLGVPHDLIGTHLPGLLRAYSLRYPDVDISLISATSPELLEQVRRRKLDLTLAEEPIGAAAGGER
LAVDRVVWLAAPGGQAWRKNPLPVSLVSDACAFRPVLADALDGGRIPWRSVFENGNADATLTTVRLDLAVTASLLSVAPA
DLQVLDAASGLPALPDYAINLYIAPGERSQAVEEMARHIRQAYQERRPAYAAAA
>SEQF2266_AEE67421.1 hypothetical protein BPTD_2120 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPADPRLAQLRRMQRWALALLAAMIAGFVTSHLMGGQGAWAWVRAFCEAATVGALADWFAVVALFRRPLGLPIPHTAI
IPANKARIGDNLALFVRDHFLDPATLLEKLRVFDPAARLGHWLADPRQTRSLGQGARQVALQALDLLDEQAVSRAIQGFA
VAQLRRWDAARTAGEVLALLTRDGRHQELLDAALHRLGDYLGEEDIRQRASALLVKFARKEWPRIIAAVDVIGSVEGIAD
NLADRMARALVDELRDVLSRPDHPVRRNYEAWVADYIARLRDDPELAGQVEALKQRLIDDPRVQEYALGLWRDIHAVLRR
DLEAEDSALARHLEDALQALGQRLSRDPELRRAVNEHVLDSARKLTDSLRSGVTEHISRTVKNWDERHLVRELELSVGRD
LQYIRFNGTLVGGLIGLALHAGVLLVQRAGG
>SEQF2266_AEE67422.1 hypothetical protein BPTD_2122 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSSQVPNPVLVLVGSPRRDGNSALLAQAVAEGARQSGAAATLLFLDDYIAGFLTDEKEADARRPDDRYGELFFDHFLPA
RAVVLCTPVYWYGMSAQAKAFFDRSFTYYSASHPRHAEVLRRMTGKRLALAVSSEETYPGAALGIVHQLQEFTRYTHSQF
VGMVHGAGNRRGEVAHDPRRPLQAAHRLGHDLLSLPYSDYRIDSPRDHQVWPGAPA
>SEQF2266_AEE67423.1 aldehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLSDLKKLGLDVAYPFKEQYENYIGGQWVAPAGGEYFDNLSPITGQPFCRVPRSGAADVELALDAAHRACAAWARTSPA
ERANILLRIADRIEGQLPMLAVAESIDNGKPLRETTAADLPLAIDHFRYFAGCIRAQEGAISEIDANTVAYHFHEPIGVV
GQIIPWNFPLLMVAWKLAPALAAGCVVVLKPAEQTPASILVLAELIGDLLPPGVLNVVNGYGKEAGQALATSKRIAKIAF
TGSTPVGKHILHAAADNLIPATVELGGKSPNIFFDDVMDHDDEFLDKALEGLAMFALNQGEVCTCPSRILIQESIYERFI
EKAIARVQSIKTGHPLDAGTMVGAQVSQVQMDKILSYIDIGRQEGAQCLTGGARNDMLPGGLDQGFYVQPTMLLGKNSMR
IFQEEIFGPVAAVATFKDEEEAIAMANDTFYGLGAGVWSRDGARAYRVGRGIEAGRVWTNCYHLYPAHAAFGGYKQSGIG
REAALSNYQQTKCLLVSYSAKALGFF
>SEQF2266_AEE67424.1 putative sigma-54-dependent transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGYQLSASGQHLPSTQAAAPIVRSWERCASAAADLHDDPVALRHGDLQERLEQHACVLRAAQPEIETLAGMVASASSLV
LLADASGVILQASGNTGFLQRADHVALRPGVSWAENHRGTNAIGTALIEAAALRVHGAEHFLRRNQILSCHAAPIRSPRG
EILGVLDISGDAGRMHAYALSLASMCARQVANRVIEQAGERCLYLVFHKQASLLDSVERGLLLIEDERIVGANDAAVALL
GATWPALLDQPLDGWLVDWRAVARTPGRVHTPQGAPFHAVLRQGGHARSLPAPPRPPRAMPAQAPEETLPALAPALQAGF
ERARRALDGGLSVLLQGETGAGKEVYAQHLYRRSIWRDGPFVAVNCGALPESLIEAELFGYEPGAYTGARRLGARGRLRE
ADGGVLFLDEIGDMPLALQTRLLRALQERMVQPLGADKAVPVNFGLVSATHRDLDAMIAAGEFRADLYYRLHDYAVPLPR
LRERDDLRPFICAALRALDDTPAGLTLADDALDALAAYAWPGNYRQLRSVLRTLALFHPPGSLIHRHHLPAAIAAPAVHA
ADGAAPPPSVVAPPAAATLRDAGLHRIDQALARHGGNIAGAAHELGIHRSTLYRHLARQRG
>SEQF2266_AEE67425.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQALTGFTWLLALQALGEACSRLLHFPIPGPVTGMLLLLVALRWPPVREPVALAAQFLLSHLSLLFVPVGVGVMTHIALL
AEYGLRMAAVIVLSTLAGMAATYWALRVGRSATPEADDA
>SEQF2266_AEE67426.1 putative biotin synthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTRSTPTIGQRFDRAAARYETHAEVQRHAAEQLAERIAALPLPAEPRILEIGCGTGLLTRALARRLGRADWTITDIAPA
MLAAQQAGPPPAGRVRHQLVDGEHPAGLPGGYDLICSSLAVQWFGDLDAGLARLAGLLAPGGLLAIATLAEHTFSEWRAA
HQAHGLHAATPAYPPAERIGRTLAGLRGGITREAYRQRHPDALHFVRSLKAIGATAPAAGHAPLSPAAFRRVLAQFDRQG
NHVTYDLAYGLWRKQAPGVFVTGTDTGVGKTLASAILARAWRAHYWKPLQTGVAEEPGDTETVAALAGLEPARLHPPAHV
LQAPLSPWAAAPLEGVTLDAAAIAPPQVDGPLVIEGAGGLYVPIDERHMMIDLIARLGMPVVLAARSGLGTINHTLLSLH
ALRERRLPVLGVIMLGEPSAGNRHAIEHFGGVPVLAQIPRLARVDAEAVEAWAARIPPLADCLARRWPDPQETPACRP
>SEQF2266_AEE67427.1 hypothetical protein BPTD_2129 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPRPLLRFEHGWAHDAGVWAPLRAALADWPQQAADAGYFGPAVEPPADGAPVVAIGHSLGFLKILQSPAPGCIAYIAI
NGFARFAGGADYPPGVAPRLLERMLARLELDPAAVVDDFRRRAGSAPHAGTPRPEPLRHDLRRLREADERQALAASRLPL
LALAGTADPIVPPALTRAQFGACAGLHWRDGGGHLLPASDPDWCAGRIRAFLAGLPA
>SEQF2266_AEE67428.1 putative 8-amino-7-oxononanoate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKLDSLFTAALEQAAQRQVRRRLRHAAATPPGRLALDGRTLVNFSSNDYLGLARHPLLAERASLWATRHGAGAQASRLV
CGNLDLHEQVEAKLARLKGTEAALLLASGWQANAAVLPALFKAAAAQGEPQVYTDRLNHASLHHGCQAAGVRQIRFRHND
LAHLEHLLAERAGAPGARFIVTESVFSMDGDRADVPALAALAARHHAFLYLDEAHATGVLGPRGMGLAGLAPGGVDLAMG
TFSKGLGSFGAYVAGSRALCDYLVNACSGFIYTTALPPAVLGAIDAALDLVPRLDQARATLQGHGERLRASLAAQGIDCG
ASSTQIVPAIIGDAGHALALAAELERRGLLAVAIRPPTVPAGTSRLRIALSAAHGEAELDQLIEALAAGWRAVRQAA
>SEQF2266_AEE67429.1 adenosylmethionine--8-amino-7-oxononanoate transaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNTTPAWMAQGYPHIWLPYAQMKTAAPPLPVVRSHGSLLELADGRTLIDGVAAWWTACHGYNHPHIAQAVREQLDRMPH
VMFGGLAHEPALNLASRLSALLGPGLERVFYTDSGSVAVEVAMKMAVQFWLNQGERGRTRFVAFRGGYHGDTFGTMAVCD
PDEGMHAMFRGLLPEHDVLALPRDEAALAALQAHLERHAGRIAGMLVEPLVQGAGGMLLHDPQVLARLRELADRYGILLI
FDEIFTGFGRTGTMFAFEQAGVRPDIVTLSKALTGGTLPLAATVASARVFEGFWSDDPGHALMHGPTFMGCALACAAANA
SLDLFEREPRLRQVAALEQALRAGLEPCRDLPWVRDVRVLGAIGVIELDGIGARDDLRRRLVEAGVWVRPFGNIVYLTPA
FTIAEDELQALLEAVRQVVAERRP
>SEQF2266_AEE67430.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67431.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPTSILAVPADLPGADRQARRHALVRLGVAWLAMMQVMMFAWPGYVRNDGIPADALATLDWAIVLMNWAALLMTVPVVL
YCAWPIWRGAAGGLRRGRAGMDAPVALGIVAAFVPSVHATWTGRGEVYFDSVTMFVAFLLTARYLELCARQACGASALAT
PLVRRLHQAGGELGAAADRLATRFVFVQVALALAAGEAWTQIDAAHAVPVMVALLVMSCPCAMSMAVPSAMACAHSALLA
RPEATTAQGDALLAAAARVARQNLYGSLAWHLLMTPLALAGWVAPWLAAITMLLSSLAVAGNAWRLRRHRWDAAPAAAVA
QPAP
>SEQF2266_AEE67432.1 putative outer membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSILYLLLPLSLAFVLAIGVALWWAVFSGQYDDTEDQGAAILRDNDN
>SEQF2266_AEE67433.1 cytochrome C oxidase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQKQHGFFSHQTLEKNIGLMIIASILVVSVAGLVQIIPLFFQHSTTQAMPGVEPYEPLQLMGRDVYIREGCVGCHSQQV
RTLQAEVQRYGPYSVAGESVFDHPFLWGSKRTGPDLARVGERYSDEWHRIHLRDPRAVVPESNMPAYPWLQHADLTGQNV
AQRMQALRRLGVPYTDEAIAAAPAAIAGKTEEDALVAYLQALGVGARRGAASEPQRAAGG
>SEQF2266_AEE67434.1 putative cytochrome C oxidase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMGYLSALITVLSMGTFLGIVWWAWSSHRQSANRESALLPFALPDEDGPAQQDGAMQP
>SEQF2266_AEE67435.1 putative cytochrome C oxidase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDFVNGFWSYFIGIIAIGGIVWCVWLLYSQRRWLSTRPAGGVVEDTGHVWDGDLTELNNPVPRWWTWMYLLTCVFALGY
LVLFPGVGSYQGTLGYTSVGEVKQKQAELAERVKPVYERFGGMTPEQLVADAPAREIGQRLFLNTCAQCHGSDAKGSTSF
PNLTDGDWLYGGTPEIIAETIAKGRHGVMPPWKGVIDPRMAGDIAHYVRSLSGLAVDPVRVFRGKREFANYCVACHGVDG
KGNQALGAPNLTDDVWLYGSSEASIVRTILDGRDNRMPAHEEVLTPEQIKLLSAWVWGLSNQAPAKAAEAAR
>SEQF2266_AEE67436.1 putative ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQGTPAAPGGPSDPQPPAWRPAPGPRRADGETLEQTLADVRSKIYPRSVSGIFARWRVVFVVLTQLIFYGLPWLQWNGR
QAVLFDLGARKFYLFGLVLWPQDVVYLAVLLVISALALFLFTAVAGRLFCGYACPQTVYTEIFMWIERRVEGDRIARIRL
DEAPWSARKLRIKATKHVLWLAVAWWTGSTFIGYFAPIRELGHQLFALQLGGWQWFWMLFYGFATWGNAGFMRESVCKYM
CPYARFQSVMVDHDTFVVTYDKRRGEPRGGRSRKIDHKAAGLGDCVDCSLCVQVCPTGIDIRDGLQYMCIGCGACIDVCG
QVMDKMRYAPGLIRYTSERAVDEGLDGRRARSHLLRPRVLIYGGLILALAIAFAVSLGMRNPLRVNVIRDRGALGREVAG
GLVENVYRLQIINTSDQPLRLQLTAEGIDGLAVLAGRDGSDVVEVEAAANKLVPVVLRAPRGDTAPGAHAIVVQARSQDT
GRVLEVREPASFYLPE
>SEQF2266_AEE67437.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGPLVAIIGCVITIYLAMTRYGDQPIAEGAVKRGLVVERVAAPAADARR
>SEQF2266_AEE67438.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRWRSLMWILWPSFLAAGVGSALIFALIDPLDVAIFGQVPTSRTGFYTVSFFVLWLVTALSSTVTAYLMPPGGQDETPF
>SEQF2266_AEE67439.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDALHVVVVAGAVVAGFVQGLSGFGYGLTAMSVWAWSIDPRLAAALVVFGSLTGQLIAAFSVRRGFDWRRLLPFLLGGLV
GIPIGVRILPMLDVHMFKALLGCFLVLWCPLMLAVKYLPRITAGGRLADAVVGGLGGVMGGIGGFTGTLPTLWCTLRGFA
RDEQRSIIQNFNLGTLLVTMATYVGTGIVTADMLPLFGLVALAMLIPTVLGTRLYLGISDQAFRRIVLGLLTLSGVAMLA
SSLPRLL
>SEQF2266_AEE67440.1 hypothetical protein BPTD_2143 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIRSETPADQRAIFDVTQAAFRGHPHSEQTEAYIVQALRAAGALTLSLVAELDARVVGHAAFSPVQISDGSPSWFGLGP
VSVDPAHQGRGIGTALIEHGLARLQARGAAGCVLVGEPAYYGRFGFRPEPGLVLPDMPPTHFLALTFGAPARGTVTYHPG
FAARDA
>SEQF2266_AEE67441.1 putative ABC transporter, ATP-binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAVISVQGLSKTYASGHPALKNINLDIYRGEIFALLGPNGAGKTTLISIICGIVNPGSGRVLADGHDIVREFRAARDAI
GLVPQELTTDAFETVWNTVSFSRGLFGKPADPALIERILRDLSLWDKKDSRIMALSGGMKRRAMIAKALSHEPRILFLDE
PTAGVDVELRHGMWQMVRRLRENGVTIILTTHYIEEAQEMADRIGVIRKGEIILVEDKHALMSKLGKKQLVIMLDAPLAA
LPALAGDYQLELAAEGTQLVYTYDNQVSGGIAALLRELDARGIGFHDLQSSESSLEDIFVSLVSAQT
>SEQF2266_AEE67442.1 putative ABC transporter inner membrane subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNWYAIKAIYKFEMARAWRTLMQSVASPVISTSLYFVVFGAAIGSHMVEIDGVSYGAFIVPGMIMLSLLTQSVANASFGI
YMPRFSGTIYEIHSAPISYVEIVLGYVGAAASKSILLGLIMLATARLFVPFHIDHPVWMLAFLVLTAVTFSLFGFIIGIW
ADGFEKLQIIPLMIITPLTFLGGTFYSIKMLPPFWQTVTLFNPVVYLVSGFRWAFYGSADVSLGVSLGMTLAFLLVCLLT
VRWIFRTGYRLKT
>SEQF2266_AEE67443.1 hypothetical protein BPTD_2146 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMQTESNPLAERFIARNLLDLAIRITLIGGLTVWCYRVAEPFIGMLLWSIILAVTLAPLHMRLTRLLGARPRLAAVVLTL
ATMLVLLVPGAMLTASLGDSLVNIFHHSTGRIVRIPAPPDFVIELPLIGVRLHEIWLQAMTNLQDVLKPLQPHLATAGRW
LLAGMASAGLGIAVFLASIAIAGVILVYADPAKRAAHAIGVRIAGPEQGVALAQLTAATIRAVAQGVIGVALIQAVLAGL
GFLLAGVPAAGLWAIVALLICIVQLPLFLLMVPMVVYVFLNNTPTVAIVFAVWCLLVSLCDNVLKPLMLARGVDIPIPVI
LIGALGGVLAAGIVGLFLGSVGFGLGYVLFMQWVRQQSPAG
>SEQF2266_AEE67444.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67445.1 hypothetical protein BPTD_2149 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRIGGVGIAWYRKEDYERVRAISNDAHTFPDTFEDWEKRAEERREEILKLGHVVIKAYIDPDTFPAWCRANRYKVDAKG
RMAFASAEAHRVTSHVHKD
>SEQF2266_AEE67446.1 RNA polymerase sigma factor RpoD [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKSTGKSPSAIDAATAQSTTAKRAASMAAEKAPAKTAVKVAKPAAKTAAKKTATKTVAAKTAAADKPAKTTKARAKKAE
DKLADLVGAARPAPSGRRPGRPAKNANNDSDAFDDSMDGEGEVLPDLKPPKRGGKRGKADPKDLIARGPVSPEEYEARRN
RLKQLIKLGKDRGYLTYGEINDHLPDDLVDAEAIDGIISTFSDMGIAVYDQAPDAETLLMSENAPVASNDDDVEDEAEAA
LTTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKHMVMAISACPTTINEILAHITRVREGQAQIDEVVD
GLVDPEDGEEYAGAGVTADEDEGDDGPAGGMSSKQLEDLRVKALAKFDEVSKQFEKMRQSYEKEGYKSDAYLKAQDIIQT
ELMGIRFTAKMVEKLADTLRAQVEEVRQLERAVLHTCVDRAGMPRSHFLKAFPGNETNLQWVLDEVAAAHAYSETLERQI
PAVQELQQKLIDLQTRVVLPLKDLKDVNKRMATGEAKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMK
AVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAQKMDMPEDKI
RKILKIAKEPISMETPIGDDDDSHLGDFIEDTATLAPSDAALHGSMRDVVKEVLDSLTPREAKVLRMRFGIEMSTDQTLE
EVGKQFDVTRERIRQIEAKALRKLRHPSRADKLKSFLEGQ
>SEQF2266_AEE67447.1 DNA primase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIPESFIQDLLARVDVVDVVGRYVQLRKGGANLLGLCPFHNEKSPSFTVSPTKQFYHCFGCGAHGSAITFLMEHTGASFP
EAVRTLAAAVGLTVPEENHSPRQQAESARRKAEVSRHTQVLDAAQAHYLRQLRGSPQAIAYLKQRGLTGEIAAHFGLGWS
GTDRHGLSHVFDNYEDPVLVEAGLVIESEDGRRYDRFRERVMFPIRNARGSLIGFGGRIIGKGEPKYLNSPETPLFSKGH
ELYGLWEARLAIRQEGQVVVVEGYMDVVGLALQGIANAVATLGTSTTPDHVKKLLRASDKVIFSFDGDAAGRRAAWRALQ
ACLPVLRDDIAIRFLFLPAEHDPDSYVRELGAEAFRTRLGEAVALSRFLLDELASRHTMGEAEGRASCLHEAKPLLAAIP
ECALRVQIERELARLVQLTPEEMAQVLAQQPARPLASAAAPAQASAPAAGREGGPGHADEAPPDWAFEPVHDFEPDAYSV
GAVDGEPSMPAAGGWQERKGRQGGDWKGKKGDWKGKKGDWKGRRDNDTGGYEGRRTMPSLARRLLCLLLAHPELVDTMGD
QQLEVIDHGPHLGLVRDLILLAQTSGARHVGALMEAADPDSDLYVVLKGLRADVLAQEDLPHPQTEWDDALRRMEFDAAR
AEMAKLAESGLATDEARRRYLELSSRIMVLKNAGAQ
>SEQF2266_AEE67448.1 30S ribosomal protein S21 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIVRLKENEPFEAALRRFKRTIEKTGLLTELRSREFYEKPTAERKRKHAAAVKRHYKRIRSQQLPPRLY
>SEQF2266_AEE67449.1 putative transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSPSSDDSHLWVTWDDYHRLIERLALQVYQSGWQFDQILCLARGGVRVGDVMSRIFDVPLGILATSSYREAAGTKQGDL
DIAQFITITRGTLSGRVLLVDDMVDTGHTFNKVHTHLSEQFPAISELRSAVLWWKGHSQATPDYFVDKLPTNPWIHQPFE
DYDSLRPHQLEAWIRKGYK
>SEQF2266_AEE67450.1 adenylosuccinate synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRKMSKNVVVIGTQWGDEGKGKIVDWLAESVQGVVRFQGGHNAGHTLWINGKKTILRLIPSGIMHDGVTCFIGNGVVLS
PEALLREIEELEAAGLDVRSRLQVSEICTLILPYHVAVDKAREARKGEGKIGTTGRGIGPAYEDKVARRALRVQDLFNPA
LFDEKLAEVLDYHNFVLTQYLGAEPVSANEVRDQAMALAPALAPMVRDVSSNLFALQQEGKNLLFEGAQGALLDVDHGTY
PFVTSSNCVAGAASAGAGVGPQALQYVLGITKAYTTRVGSGPFPTELVDEIGARLATIGKEFGSVTGRPRRCGWLDGAAL
KRSVRLNGISGLCITKLDVLDGLETIQLGVGYRVNGEFRDVLPYGAHAVAQAQAVLEELPGWTESTVGITEYSKLPVNAR
RYLERVAEVCGVPIDLVSTGPDRNKTIVLRHPFKG
>SEQF2266_AEE67451.1 ATP phosphoribosyltransferase regulatory subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGNWLLPEGLADVLPAEARRIEELRRELLDLYRTYGFELVAPPLVEYIDSLLSSTGSDLNLRTCKLVDQLSGRTLGVRAD
MTSQVTRIDAHLLNRAGVTRLCYCGSVLHARPADLLSSRELLQIGAEIYGHAGFEADLEIIQLVMDTLATAGVRNARLDL
CHSGVMRAIFDADPQASRHAGDLCTLLREKDVPGLAELASRVDGLGEDTVRALQALATLYGGPEIIARARRELPAVPGMA
QALDALQALVDAMPGVTLSVDLADVGGYGYHSGVTFAVYGEDWHDALVRGGRYDDVSCAFGRARPATGFSLDLRKLAAGL
TPAEPARAVRAPWGQDPALTDAVRRLRRSGEIVVQVLPGHEQGLDEFVCDRELALQDGAWTVRTL
>SEQF2266_AEE67452.1 putative inner membrane-anchored protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRLMPILVGLLVVLAVLSSCVFVVRERDYALVFSLGEVRQVISEPGLYFKAPPPFQNVVTLDKRILTIESSDAERIQTS
EKKNLLIDSYVKWRIADPRLYYVTFGGNERAAQERLQAQIRDALNAAVNVRTVKDVVSAERDKVMAEILTNVVKRAEPLG
VQVVDVRLRRIEFAPEISESVYRRMEAERTRVANELRSIGAAESEKIRAEADRQREVIVAQAYARAQGIMGEGDAQAGSI
YAQAFGRNTEFYTYYKSLEAYRAAFGKTGDVLVVDPTSEFFQFFKNPGKGAAGAPAPAN
>SEQF2266_AEE67453.1 hypothetical protein BPTD_2157 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRITKLFNLNDPGWGRGNNNGNGSEPPRRPQGGGDGPPDLDEVWRDFNNRIGALFGRKGGGGNNRPNNRGGMTPPSPRG
ARIGLGIIALVLVLLWLASGFFIVQEGQVAVVTQFGKYKSTAPAGFQWRMPYPIQNHEMVNVSQLRTFEVGFRGGSRNKV
LPEALMLTTDENIVDMQFVVQYRLRADGAPDYLFKMRDPDESVRQAAETAMREIVGKKPMDFVLYEGRTEVATEVQNLMQ
QILDRYSAGIQISTVAIQNVQPPEQVQAAFDDAVKAGQDRERQINEGQAYANQVVPLASGQASRMIEQAEGYKAKVIGDA
QGNASRFSSILNEYEKAPQVMRERLYLETMQEVFTRASKVMVDTKGGNNMLYLPLDKIMQQAAQDAGKPSSSSLGLPGAN
QPAIPQAPARGSTSGQSSSGSSTSNTLPRDRMSR
>SEQF2266_AEE67454.1 putative GTP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRALIISVDLGNPDYPAHAEEFAMLAKGAGAEIVGTLTARRDRPDAKFFIGSGKVEEGVAMAGALLADIILFDQPLSPAQ
QRNLEREFNLRVVDRVALILDIFALRAKSHEGKLQVELAQLQHLATRLTRMWSHLERQRGGIGMRGPGEAQLEMDRRMIG
AKVKVLRERLDRVERQRVTQRRARARGGALSVSLVGYTNAGKSTLFNAMTRAGAYAADQLFATLDTTTRRIWIDGAGSVV
LSDTVGFIRDLPHNLIAAFRATLEETVYADLLLHVVDAASAQRDEQIAEVDKVLAEIGAAQIPTILVYNKIDRAGLEPRV
DRDAHGTIARVFVSATERAGLDALRGAIAEIGQIVGNNVSNHQTLQSE
>SEQF2266_AEE67455.1 RNA-binding protein Hfq [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNKGQTLQDPFLNTLRKEHVPVSIYLVNGIKLQGQIESFDQYVVLLRNTVTQMVYKHAISTVVPARAVNFQVEVPAE
>SEQF2266_AEE67456.1 histidinol-phosphate aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRYWSPVVGTLSPYVPGEQPKLPDLIKLNTNENPYGPSPKVLQAIAAAAGDTLKLYPDPASDELRGAIAAAVGVQADQV
FVGNGSDEVLAHVFMALFRHGRPVRFPDISYSFYPVYCGLYEIPYQVVPLTDDFRIDPADYQPGGQAAGGIIFPNPNAPT
GRALTRDEVERIVTANPDTVVVVDEAYVDFGAESVAPLVDRHDNLLVVQTLSKSRSLAGLRVGFAVGNRALIDGLERVKN
SFNSYPIDRLASAGAQAAMQDQAYFDRTRQAVMATRERMSADLRALGFDVLPSAANFVFARHPEHDAAQLAARLRERSIL
VRYFRQARIDQFLRITVGTDAQCEALIGALKKIFSL
>SEQF2266_AEE67457.1 GTP-binding protein EngA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFKPVVALVGRPNVGKSTLFNRLTRSRAALVADFSGLTRDRHYGEGRVGDTPFLVIDTGGFEPVAKDGILAEMARQTRQ
AIAEADVVVFLVDARAGVNAHDHEIARLLRKSGQQRVLLAVNKAEGMGVGNATGDFHELGLGEPHPISAAHGDGIVDLIE
IALSGLVAPPADTGEQLEQDVVDHRIKLAIVGRPNVGKSTLINTLLGEERVIAFDMPGTTRDAIEIDFERDGRKYTLIDT
AGLRKRGKVFEAIEKFSVIKTLQAIEASNVVLLMIDAQAEVSEQDAHIAGFVLETGRAVVVAINKWDGLDSDQRERIERE
FQRKLRFLGFARMHTISALKGQGVKPLLKSVNAAHAAAFAKLSTPRLTRELQAAVEQQPPPRKGIFRPKMRYAHQGGQNP
PLIVIHGNALDAVPDSYRRYLETRFRNAFDLAGTPLRIEFKSSRNPYVQEN
>SEQF2266_AEE67458.1 putative quinoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMRNSRPGRAWRGAVVLTGLLALSGCSMFSSDDDRYKPAELTQYAPGMSVRTAWTASVGSGSGLGFAPTVLGESIYAATP
DGSVGKFDLLSGRAIWKSSADAKLSAGAGSDGQTTAVATPDGEVIAFDDTGKIKWRARATSDVAIPPVVGYGVVVVRSGD
YRIQAFNAENGERMWSMQRPGPALALRSAAQMVLAEGLVISGLPGGKLLAINSATGNVQWEGTVATPRGASDLERLTDVV
GAPRIAGRLMCAVAYQGRIVCFDVSAGGRPIWAKDFSSASGMVIDDRFAYAPDQGSVVSAFALDSGNNVWKQAELKNRLL
TAPALLGEAVAVGDFEGYVHFLSRSDGRLLARLSVGGGAIVSPPQTTSQGVLVQTGNGSLVMVRAN
>SEQF2266_AEE67459.1 hypothetical protein BPTD_2163 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAYDLEEQEKLDAIRAWWARYGTLILTLATLVVLAWGGWSGWKAYQNYRANQAMGYFEALEDAARLGGADAATRIKAAAA
TLRTDYPATGYAGRGALIAAQALQSQQDVDGAREQLEWLAAQAKQLALQPVARLRLAGILLDQKQYDAALAQLNNPPASF
AALFADRRGDVLAAQGKRDEARAAWQSAIDGLGTSNPLTQVVQLKLDALSGA
>SEQF2266_AEE67460.1 histidyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVGMTKMTQVFQKVSAIRGMNDVLPGPSARWEKFEEIVRGWLRSYGYRNVRTPVLEHTRLFARGIGEVTDIVEKEMYTFT
DALNGDSLTMRPEMTAGIVRASIEHNMLYDRPHRVYAIGPVFRHERPQRGRYRQFHQIDVEALGFAGPDVDAEMIVMLAR
LWKLLGLQDVRLELNSLGQPAERAAHRAALIEHLERHQDVLDEDGRRRMYSNPLRVLDTKNPAMQEMADSAPRLFDFLGE
ASRSHFDGLCQRLADAGIEYRLNPRLVRGLDYYNLTVFEWVTDRLGAQGTVCGGGRYDGLVELLGGKPTPAVGFAIGMER
LLDLWEQSVEIEQPAECEVYIVHQGEEGQRLAARVGEQLRDAGLDVIVHAGAAGFKAQFKRADASGARIAVILGGDEVAS
RTASIKHLRGPVGADAAQQQVPLAQLADVLKSKG
>SEQF2266_AEE67461.1 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRYMQDSSMPCQDASPPDVGAAPRRATRAVRVQWGGRTVTVGGNASVVVQSMTNTDTADAVATAIQVKELAQAGSEIVRI
TVNTPEAAREVATIREQLDRMGVEVPLVGDFHYNGHKLLTQFPECAQALSKYRINPGNMGGGKQRDDNFAQMIEVACRHD
KPVRIGVNWGSLDHELMARKMDENSRRAQPWEAQAVIRDALVVSAISNARRAEELGLRSDAIVLSCKVSHVQDLIAVYRD
LSARCDYPLHLGLTEAGMSSKGIVASTAALAVLLQEGIGDTIRISLTPEPGGDRTREVIVAQEILQTMGLRAFTPMVVAC
PGCGRTSSTFFQELADSIQSFLRRQMPLWRTRYPGVESMNVAVMGCVVNGPGESRHADIGISLPGTGEVPAAPVFIDGER
TVTLKGDHIAEEFQAIVEDYVARRYGAGITH
>SEQF2266_AEE67462.1 hypothetical protein BPTD_2166 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQDPASAASPAAIAPGAAAPTVGSALRALRQAKGWSLEEVSSRIKFSTRMIQALEEERWESLPKGVSLRGLVRNYARML
GADAQAVVDSLDLEAARTPAPARPAPRGGQGLRPAGVNISVDDERSSGSWGWLLAILVVVAAAVAYAFWQGWLPQEWLPA
QWFSPVTQ
>SEQF2266_AEE67463.1 hypothetical protein BPTD_2167 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEAVERVNLLGLDGAALSELVGQWGGKPFRARQLQRWVHQRGADSFDAMTDLARDFRAQLARDCVIEALPVNTEQRSSDG
TRKWLFDVGQGNAIETVFIPEDDRGTLCISSQAGCVVNCRFCSTGHQGFNRNLRASEIIGQLWWAKRVLEAAADTARLPG
GKAGEDTRVISNVVMMGMGEPLLNYDQVLPALRLMLDDNAYGLSRRRVTVSTSGVVPMMDRLSQDCPVALAVSLHAPNDA
LRDELVPLNKKYPLNALLAACERYLAHAPRDFITFEYCMLDGINDTDQHARELIQLARQVRCKLNLIPFNPFPASGLKRS
PSARVRVFAQRLMDAGIVTTVRKTRGDDIDAACGQLAGEVRDRTRITERNATRTIPIQQVHA
>SEQF2266_AEE67464.1 nucleoside diphosphate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIERTLSIIKPDAVAKNVVGQIVARFEQAGLKVIAARMQQLSRTDAERFYAVHKERPFFKDLVDFMVSGPVFVQVLEGE
SAIQKNRDLMGATDPKKAAPGTIRADFADSIDANAVHGSDAPETAAVEVAFFFPEINIHSR
>SEQF2266_AEE67465.1 valyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDAAPNQPVNESQELSKSFEPAEIETRWYDEWAKRGYFDAGRHVETGTDPQPYVIQFPPPNVTGTLHMGHAFNQTIMDG
LVRYHRMLGDDTVFVPGTDHAGIATQIVVERQLDAQKVSRHDLGREKFVEKVWEWKEQSGSTITGQVRRLGASADWPREY
FTMDARMSRGVAETFVRLYQQGLIYRGKRLVNWDPKLLTAVSDLEVQSEEVDGHMWHILYPFVDGPQTITDQDGNTVTLR
GMTIATTRPETMLADGALCVHPDDPRYKHLLGKLVELPLCDRNIPIIADDFVDPDFGTGCVKITGAHDFNDYACALRHDI
PLIVIFTLDAHINENGPKQFQGLERYEARQAVVAELQAQQYLVKVEPHKMMQPKGDRTGVVLEPMLTDQWFVAMSKPAPA
GTLNPGKSITEVALEAVADGRIAFYPENWTTIYNQWLNNIQDWCISRQLWWGHQIPAWYSEDGQVFVARSEEEAQEQARA
AGVSGPLTRDPDILDTWFSSALVPFTTFGWPEDTPDLRRYLPSSVLVTGFDIIFFWVARMVMLTMHMTGSVPFKHVYVHG
LIRDADGQKMSKSKGNTLDPVDLIDGIDLKGLVRKRTFGLMHPKQAGAIEKATRRQYPDGIPAFGTDALRFTMAAYATLG
RNINFDLKRCEGYRNFCNKLWNATRFVLMNTEGHALDGDGGELSFADRWIVSQLQALEAEVERGFADYRFDNVANALYRY
VWDEYCDWYLELAKVQIQQGTPAQQLGTRRTLIRVLEAVLRLAHPVIPFITEELWQKVALVAGKRTAGAVASVSVQPYPR
ANPQAVDAEAEAAVAELKSQVEAVRALRGEMNLSPAQRVPLVAEGPTDVLSRNTPYLAALAKLSEVEVVAALPDAGAPVQ
VVGDARLMLHVEIDVAAECARLDKEIARLEGEIAKANGKLGNASFVERAPAAVVEQEKARLAQFSETLEKVRGQRVKLGV
>SEQF2266_AEE67466.1 putative outer membrane (scaffolding) protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMKHAWWRATVVCLAGTLGTAAQAQNYIGISAAVAPRYEGAKDYRFLPVPLIHYENGPFFISPRAGLPSAGLKWQLGEH
VHAGVFVGAHLGRDADDSDILHGLDDIDMHATYGAYIEWQYGALGLGAAYRQAARSGYGGVGELRATYRVWQTGRDSVSV
GARTEWASDDYMRTWYGISASQAARSEAGLRRYSASSGFKSGGIFASWTHRLDQSWAVNATAGVNTLFGDARDSPVSERS
TNYFGGVGLTYAF
>SEQF2266_AEE67467.1 putative two component sensor kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSLKRRILTAVLAALLLNWGVWLGWQTFEMGRRETGTWDARLRDVASQAVLSMPLDIMERSEPTGFRLPEPVQTSELRM
SFQIWSMASRRQIVHSVNAPPGPLNPAFADGYADVELDGEPWRVYSVTDAEGRIQAQAGHSLAARRGDILQWLGASLKAS
ALLFLFLALSILLAIDRAMRRLDRVGRAVQQRDPLDLAPLPDGDVPAELRPLITAINRQFGRVHTALARERRLIADAAHE
LRTPLAALKMQAEVALGARHADERHSALCKLLDAARRAARLSEQLLDQARLDAMEATVPGGEVDLATLTAMIIADHQARA
QARHQRIQLDARPAFVSGDLDSLGILVSNLVDNALRYTPEGGRVVVYCGPLENSAVGLRVLDNGPGVPADRHERIFERFY
RQPGQAQRGGGIGLSLVAQIARLHRARIDCGAGLDGRGFGIAVGFAPRG
>SEQF2266_AEE67468.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF2266_AEE67469.1 D-amino acid dehydrogenase small subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVCVVGAGVVGVTSAYFLARQGHEVVLVDSHAQPAEASSYANGGQLSYSYVAPLAGPGVLPSVPGWLLRSDSPLRLRPR
LDPHQWRWCLQFALACRASVAERSTAQLQTLSYLSRDVMDGLLAQEELEFGHVRNGKLIAYRDHALLEKARRLVAYQASL
GAEQQVLDAAQTLALEPALAGLGASLAGAVYTPSEEAGDCRQFTEALFARLQQLDNVQCLMSNPVRGLWREGRRIVAVQA
AQGDIGVDAVVLATGVGTRALLKPLGQDVPLYPLKGYSLSVPLPVGDTTAPAISVTDYERRIVYARIGRVLRIAAMVDIG
GADAAIEPARIDLLKRQVAEAFPQLDLSQAVAWAGLRPATPTGKPLIGASRAADNLWLNIGQGALGFTLACGSAALLTAQ
MSGLELPIDATPFTPDPRRACPRTGTGTR
>SEQF2266_AEE67470.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLNRFTDFGLRVMMYLTQCRDRTVPVTIPEIAARFEISRNHLVKVVHFLSQQGWIVATRGKGGGLRLARDAVEYRIGEL
VRVLEDQGALVNCAQPPCVLNGACRLSGALAESLQAFYRTLDGYTLDDLVRAPTALAIVRLHRAA
>SEQF2266_AEE67471.1 nitric oxide dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSPEVRALVKATAPVLKEHGEALTRHFYTRMLGGNPELRQLFNQGHQQSGQQQQALAAAVAAYAEHIDDPSVLLQVVER
IAHKHVSLGVRAEHYAIVGKHLLASIREVLGEAATDELIDAWAAAYGQLADLLIGRERALYAAAASRDGGWTGWRAFKVV
RKTPESAEITSFYLAPADGGATPDYLPGQYVSVRVYVPELGLMQPRQYSLSEAPGMPGQLRISVKREAGSPAGMVSGTLH
NRINEGDVLDVSPPQGDFTLDAEDGRPVVLLSGGVGLTPMVSMLNHLTARDDGRQIRFVHACREAGVHAMKEHINALAAK
RPNVRKAVFYERVGADDRRGVDYDYEGRVDLHAIRDEVILPDADYYLCGPLPFMQAQRRALADLGVAEHRIHAEVFGTGG
VA
>SEQF2266_AEE67472.1 hypothetical protein BPTD_2178 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHDTLKARLSDSVKDAMRAKATDRLATLRFLLAAIKQREVDERRELSDAEITAVIEKQVKQRRESIAAFEQAGRTETAE
HEKAELAVLQEFLPQAAAPEEVAAAVDAALAEVSAQGVTGAPAMGKVMAILKQKLAGRADMAALSQQVKARLLP
>SEQF2266_AEE67473.1 L-2,4-diaminobutyric acid acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKDETSNTSPDISAAQPASALRYHLRPPRRNDGAAIHQLVSECPPLDLNSLYAYLLLCEHHAHTCVVAESPGGRIDGFV
SAYLLPTRPDVLFVWQVAVHSRARGHRLGRAMLGHILERQECRHVRHLETTVGPDNQASRRTFAGLAGERGAHVSEQPFF
DRQAFGGADHDDEMLLRIGPFTHPPH
>SEQF2266_AEE67474.1 MarR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNVAQTDTPQQYDLRILRALRRITRSIALHSRQLAAVSHITAPQLMCLRAVIAGGPMTATAISREIHVSPSTVVGILDR
LEDKGLIRRERGREDRRIVFVTATEGGRTLAAEAPSPLQKHLADGLNALPELEQATITLALERIVALMEQEGHAVEAAGE
GSPPILEMPTGGAPLESGLVV
>SEQF2266_AEE67475.1 SIS family regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFFIFSEIYHVFFILFRAMPPTPAPSMLETLQSLLDDLPAELQRAARWVAAHPAEVGLWSMRRQAQAVGVAPATMLRLAR
AAGCGSYEDFRAPFQQALTAAGGSGWRDRAAELQAAQDAGAAPGHDVLTGLQTQAIGSIRALNPPAAFDAAARTLLAAGQ
VGFLGTRSAFGIAHQMRYAYQLVRRNGLLIDGLGGAPAEQIDNLQAGDALVAISQAPYPAATVHLARQASQRGVTVVALT
DDPLSPLALEAGHVLLFARPERERVYAEPAQRGPGSFFHTTAGLLGLAEHLIARLAACGGETALARLAEIEARLQAEQVY
WSPAHARRDKARPGRGMPREAA
>SEQF2266_AEE67476.1 hypothetical protein BPTD_2182 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTTHVLHRSLRHTPPVAVRGEGVWLYDQAGRAYLDGSGGAAVSCLGHNHPDVRAAMHAQIDALAYAHTGFFSTEIAERL
ADRLVADAPAGTSHAYFVSGGSEAIEAALKMARQYFVEIGQPQHRHLVARRQSYHGNTLGALAVGGNEWRRAQFAPLLID
VAHVAPCYAYRDQREDESAEQYGERLARELEDTFQRLGPDTVIAFVAEPVVGATAGALTAVPGYFRRIREICDRYGILMI
ADEVMCGMGRTGTLYAVEQEEIVPDLITIAKGLGGGYQPIGAVMAQGRIVDAMSKGSGFFQHGHTYLGHATACAASLAVQ
EVIRRDGLLARVRQQGDGLRQRLMQALGAHPHVGDIRGRGLFLGVELVRDRATKATFDPELALHARVKREAMARGLMVYP
MGGTIDGRHGDHVLVAPPFIIADDELDQLVERLAGAIDAAIAQTRA
>SEQF2266_AEE67477.1 putative cell surface protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGKSVKHTLGHRKAFSLAAACAAVALAWAAPTPAAAQQKFVSIGTGGVTGVYYAAGGAICRLVNKDRASHGVRCSVESTG
GSVFNVNTIKAGELDLGVVQSDVGFNAYNGEGQFKQGGAYKKLRSVFSIHPEPFTVLARKEAGIKSFEDFKGKRFNVGNP
GSGTRASMEELLASMGWTLKDFSLASELRPDEHGPALCDGKIDGFFYGVGHPSANIQDPTTTCGAQLVSLTGPAVDKLVD
KYPYYALATIPGGLYPNNPQDTKTYGVTATFVTSEDVPEQTVYLVVKAVFDNFEDFKKLHPAFANLKAADMVKNGLSAPL
HPGAQKYFKEKGLL
>SEQF2266_AEE67478.1 inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNESSTTTADLEQLVAEADRGGRHAGGVAGATLAAGALVWSLFQLWYASPLPFSLHWGVFNDTEARALHLGTAMFLGYL
AYPATKRSARDRMPWYDWVLALAAGFCGAYLYLFYNELAIRPGQPTSMDVATAVAGLLLLLEVTRRALGLPMTVLGAVFV
LYALAGPWLPDVLAHRGASIERLMSHMWLTTEGVYGVALGVSVSYIFIFVLLGSLLDKCGAGNYMMQVSFALLGHLRGGP
AKVAVVSSAVNGLVSASSVANVVTGGIFTIPLMKKAGYGGVRAGAIETASSVNGQIMPPVMGAAAFLMIEYVGIPYTDII
RHAILPASISYIALFYSVHLEALKLGIEPMMAAGKPRTPLQKLAGWGMGISGTLIAMGLVYWIGVGVQAVAGAAAIWILL
AMLVALNIWLLRVAARHPDLPTEIDVNHPVRPEPWPTVRAGLHFLIPIGILVWCLSVEELSAGLSAFWAAAATLLQMVTQ
RPLTAWFRGQAIAPAALLGWRDAIGGLQDDARNMIGIAIACGTAGLIVGAITLTGLGLRMTAFVELVSMGNVLLMLIFTA
IVCLILGLGMPTTANYILMATLMAPVVVELGAQNGLIIPLIAVHMFVFYYGIMADITPPVGLATFAAAAISGADPIKTGV
QGVTYALRTAVLPFMFVFNPLLLLIDVNSWTELILVAGSATLASLTFASATLGWFRVRCTMLEIVVLLAVTFMLFRPDWL
LDQVSERYQARPAAEVVQTAAALPHNGRLVAVLRGINLEGDELTKTVAVALPALDEGETLQGEAAGRKRLTDAGLTIVAL
GDQVQIGGVRFGSTARRAGWEQGWDVLELRVPNPARPAEFWAYLPGLVLLALVWFAQGRRQRAAAR
>SEQF2266_AEE67479.1 hypothetical protein BPTD_2185 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYQNNLIYKGYRLTAKVARHTVEVNEAAPSGPLFQATVSVVQADSIQDTGDEYPVPYFADGGFVYSPREAVHQAISHGRE
IVDALIGLPA
>SEQF2266_AEE67480.1 putative autotransporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVGRSCHRAGWLYRATFLLYAANCAYPANAQSVSGSGQVSNGPITSPHWVVGGELIVGDTGAGTLLIEAGGTVLNDWAYI
GSDNGAVGTLTVSGRDGAGAASTWTTVDDVSIGVAAGSRGTLEVLGGARAQSGWGTIGVAAGSVGSVTVSGPGSVWNIAT
VNSFQIGSGGSGTLWIDQGGAVYSGQGVIGWNPGSDGHVTVLGPATVWNPLNNIYVGLGGTGELDIRDGAAVATAGSSPP
GAAASIYIGTSAGSAGTVTVSSATAVTSTLTSTDRIEIGSAGAGVLTVAKGGMVGVASDAWIAITGTSSGTLNLTGDASG
RGVLETGSVIKGAGNATFNLDGGVLRANRDEANFLNGFSTQAVGSGGAWFDTNAHDVGVVTAFSGTSSFNKLGAGTLTLS
GNSAAFTGNTDIQAGTLQVDGVLGGPVDVLAGARLTGTGRVGATANKGTIAPGPRSGFGTLTIAGDYAAQGGNLEIRTQL
GADDSPTDRLVITGASAGVTPVTVENIGGTGASTQRGIQVVQVNGASAGRFNLANGDYVIEGRPALVAGAYGYVLQQDAA
DGDWYLKSSLPDPGAPQGGGGLPGAGEPVLYQPGVPVYEAYANTLLHLSRLSTLRQRVGNRLYDPADVGRNGVWSRVEGS
ASQLDPSASTTGERQDVDSWKVQFGVDRILAGGQEGSRLVGGLALQYGKADTRVSSIYGNGTVDATAYGLTPTLTWYGRD
GAYVDAQAQAIWFDSDLSSRLAGKLKDGRKAHGYGLGIEAGKAFGLREGLALIPQAQLSYASTRFDSFDDRFGARVEDDK
GDSLQGRLGIALDYKSSWQAGGANRESSVFGIVNVKHEFLDGTRVRVAGVPVSSRMARTWGSVGVGADYGWGERYAIYGQ
VDADADFAGSYIVTATAGFRMMF
>SEQF2266_AEE67481.1 putative phospholipase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDPLEQLLRDYWPHIVFAISVVAGTGAAVHAAMTKQDVRAAIAWVGVALFSPLFGALLYFVAGINRIRRSLVSQQHDDAM
LAYTGHPDAQVEDVVPCSGPQFASLRVLGDQVSRFRLLGGNQVRPLAGGDEAYPAMMQAIREARVSIAMQSYIFDCDPIG
REMAQALVEAQQRGVQVRVLIDAIGSKYSRPPIVRTLVRGGVRTARFMTNPLGVMRMPYANLRSHRKILVVDGHVGFTGG
MNIRAAFVTALAGKAANGDTHFRLEGPVVAQLMAVFAHDWNFTTRESLEGPTWFPPAPERAPGSVPMRCVASGPDSALGS
THKMLLGALAVAQRHVRIQSPYFLPDQTLIGALGTAARRGIKVDIVIPGSNNLRLVNYAMSAQLDQVIRTGCRVWRSAGA
FDHSKLLTVDDAWSYVGSSNMDPRSLRLNFELDTEIYDRELAGWIGQRIDAQIRHARQETLQALNAQPFIKRLRNKVIWL
ATPYL
>SEQF2266_AEE67482.1 putative anti-sigma factor antagonist [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLTMDKMDGMLIACLQGVVNSANAEQLEAELAAQVDKGERRVVLDLGRLDYISSAGLRVVLLVAKQLRQVQGELVLCEL
KPHVREVFEISGFLTIFPVANSREAAAAAFKTALPR
>SEQF2266_AEE67483.1 putative anti-sigma factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSKTDTLELSVTATTATDALYWLEHIALRDRWSARLRFTLTLCADEALNNIVSHAFTPGHPAAIHLTLRQTRREVSLHI
ADNGAAYDPTQALSPPLARSLDDAQPGGHGLRLMRHFMHALSYQRRDGWNHLTLTSHSAPES
>SEQF2266_AEE67484.1 alanine racemase, catabolic [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLASDPFEAPIPGLHACIDPIAVAHNLEVLRQRLGVGVDGPRIWATVKADAYGHGLHNVLPGLRAADGIAVRHLHEAHQ
CRRVGWSGPIMVYAGLTHEREAALLTLQQLHLVITDMTQLEWLPGKPLYSCAPWIWLRYIGATRLGGLDASEYRRAYARC
RELQQHGALRGVGHLNHYANAASVGDLEREHADFEACIRGLPGPVSTCNSAAACVLPTMAARTDWVRPGLALYGVSPIPG
RAGRDLGLRPAMTLRSTLCATQNLPAGASVGYGCTFVADQPMALGLVRCGYGDGYPHNPRASFPVQVDGVLTRTVGRISM
DLMAVDLRPIPAAARGAPVVLWGSPQLPVEHIAHAAGTIAAELLTGLTARVPLMRADHAALLRGPPA
>SEQF2266_AEE67485.1 putative inner membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRDMPSRAAAWLGSAMSTWFDRGKGALRKLNSRPLLGVTLACVALLCLAQGLTGLLTLSALQRQIVDATAARVEASARQS
AIVIENGVRLGKPLEQYFGLRDLLDGLLEESHGVTGVAVVLKDGRLVASAGVLVPHAARLARALAFPDDEPDVQRQPSGS
VRLVGDEAVSLGIPLAGSDGIVRAALVLGWSRDPAFMHALMWRNLQVLALVTAAVALALALALVLRRGERRRRERGGARA
RFVLPLVALLLAQGVYAGYTIGMFRDVWLDVVRHNAVVLATGLQRGLDRVLGYGLELHQLRGVDRLFSRTIHAYPLIGSI
ALVASDGRVLQKVNARGSVTGDAQRRFADDPGYTVSLPLGGPDASRGALALRLDGGAVAAALRDRALDAATVAVVALVVA
VELLLLLAVVMNRALPSGQGRQPSADGTDVGGLTRPVMFGYLFACAMPASFLPLFARSLPAANLPLPPGLLIALPISLEM
GCGLLAALMAGRLSERKGWRHAVLQGLLLSCVRFVASALAPNLAWFVSARGVVGLGYGLTWMGLQALVVSRSPPTHRGRS
MAGVVAGLFAGQLSGVAVGAMLMEQLGFRAVFAIGAVLLLLPLAGVASLLRACALPSAMAASTSVPQGRRAPLGPLLRGR
GFGMLLWTSVIPFSIAQVGVMSFALPLYLEAEGAAPASIGRIFMIYGVCVVYLGPLVARWVDWSGVRRPWIVLAGALGTA
GLLVFRLLPDGLLAAGVALSLLALAGCFAGTSQMPYMLELRAVREHGAAGAASVMRAADKLGQMLGPLLIGALSGPLGMG
AAMAALGMMYLGATLWFVLARPWRQGGG
>SEQF2266_AEE67486.1 putative regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFMRRTPRLELPLSLRGKFLLLIASTLLLVGIVVMLVTQRDVTNNIIKNELHAVSNIMDLVVRDTDTRWSTLLDDKIRTI
RESRRQLIQLSAVVTSVLNAYAAQAERGHVTTGAAKGMARVWLNHLDLGPRRVAFAYDAEGTVLASTNPRMIDRDLSGIR
DFKGRPLAAAMYEESRNDGRGFAIYPSPLDESAQMRHAYFVYFPAWKWVLAISDSSQAIIDKVAAQKANMIAAIDRNLSE
LRLSRHGFVFVVADDGTVIVPPPPSAARLLDSTDVESGRVLHSMLAEISSTRGLTLRFTNGESAWQIDALRYKPLHWTII
GVVPEPDLTDPAQNLVRRQALIFAATLLAGLMLAWVVAVRIARPLAQLSNYARQLPTQDLTEPIRVPPSVACLPRRRRDE
VGQLAESFLFMNEQLHHNVRALMAQISNRERLESELSIARSIQLGLLPQPLPDAATRGSQLRAVMYPAREVGGDFYDYFV
LADGRLCFAIGDVSGKGVPAALFMAIVRTLIRSVAEEEHDPGAIATKVNHRLAENNPKLMFVTLLIGVFTPETGALAWVN
AGHPPPLLIDERGEVRLLQGSSGAACGVLDNEAYSTLSTTLPNGTSLVAFTDGVTEAIHGGCAQYGLPRLVALMQGAPHA
AAELIEHILHDLREFAADSEQSDDLTIIAIHRP
>SEQF2266_AEE67487.1 hypothetical protein BPTD_2193 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLRPGILAPLALLLGLAWPIAAASSPPPVAALSSGVALTSPRLPPPSHTSGRKWRIGYVGSGEYEEYPRTLYAIARALQ
QLGWLRIDDMPEITDMRKAWLYLATHARSNYIEFVPDAWWQPGNFDTALRPAVREAVAARLHGAKDIDLIIAMGTWAGQD
MVELGTPVPTVVVSSTDPISARIIPSAADSGQDNLHARVQPDHYQRQIQLLHDIVPFKTLGLVYEDTEAGRTYAAIDKVA
ALMPALDFSVKRCDARATGIPIATATQNVLACYQKLSSEVDAFYVTEHRGITSTSVKQLAALLRAARVPSFSMQGSDEVK
AGLLMSLAKADYSSVGMFHAQTIARIFNGEKPRSISQVWNAPAKIAINLETARRIGFDPPVDILLAADEVYEAEH
>SEQF2266_AEE67488.1 hypothetical protein BPTD_2194 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGGPHGLSGLDNGYNLLETAFAPVNGGAGGLRRLAEAVRRELRDTQLALAAEGAMLINAAEHPAASLDADWYRRVRVPRP
IYEELVGQRGWLHRIGIDAKAQNSPCTSVPVAIAARCLNVVLALAPAQIAMFANSPLEAGRVTGLKENRLTLWPRMFRGA
RYLGDDLLHRLPARPFRDLGDYFRWMFGGLTASRALPPGDACDYKNADVACLVGAPSLAEFLYAGAWSARNLNDGGSVRL
AARSEHFVYSQFAQFLDARWRYRMPIVPALPALLRAWDRQGGLEALFEQAGAQGYIEGRAPGAVFADADLLSSAGDAVAA
SAPMAASALQLGLLRNLHDAEALVRRWGWLRLRALRDRAIALALDDAQVRCLCQQVVAVAEGGLAGDEQQWLDYVRYVVE
TGETAADRMLRLWRQARGTPEMRRAQACRQRAVLS
>SEQF2266_AEE67489.1 hypothetical protein BPTD_2195 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSGLSCRHGTEEPKASHSAYSMFPLRRTRYTQGFETTAHRMNFQIPPALPALELDVFARAASQGETLYVTKAGEQFQVI
ASGTTPSGRNVSWVATDEDTLVMFSSALALAYGTGIARAVAKELDLHAVPTTSLSARVVTRAVDMAETSRHALQGVDFLT
FLSWSARADAAGFRQVCHDTGVSPDQISGTLRATIDESMQQRFASAAQSGKAPVSAHTAQEWLREVLAHHLV
>SEQF2266_AEE67490.1 putative RNA polymerase sigma factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVSPPSSGLPASLEKPDNAYPDIATERSDQQLLSSLVAEHAGRLQRFIAKHIGHSSDVEDLAQQAFAEAARAYQSFRGDS
QLSTWLYGIALNLVRNHLSRAPERRYEFTSDASLGVMPCSAPNPEAVTEQRQRMRLLREALEQLPESMRDVILMVGVEEL
SYEEAAALLSVPVGTIRSRLSRARCALREALRERGYDSVP
>SEQF2266_AEE67491.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAIGRLGYLVRGAWAGGVMLLAAGSAWAAPNWPLAPYSYYAQQQSLSDVLREFAAGFSLALQQGKGVQGVVNGRFNARTP
TEFIERLSGIYGFNWFVHAGTLYVSRTSDVVTRAVDAAGASPSALRQALLQLGILDERFGWGELPAQGVAMVSGPPAYVA
LVEQAVAALPKGAGNQQVAVFRLKHASVSDRVIRYRDQQVVTPGMATMLRQLILGAGPGNDAALAAVAAPLRENPPVFGD
AAADGNAPLAGAAQAAGRRLSEPSVQADTRLNALIVQDIPERMPIYRALIEQLDVPSTLIEIEAMIVDVNTDLVNELGVT
WGAQIGTTSLGYGDLGLRPGNGLPVDGAAADLAPGTLGISVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSD
TFYIRTLGERVATVTPVTVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQTLLI
GGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVVAIEGKPVFSPVAGTSQVFMSTGWGGHGSSLS
IAPGEGGHTQVRHDARAGRPVRLVPDSLHVEYGEAGEASP
>SEQF2266_AEE67492.1 hypothetical protein BPTD_2198 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTATIHPDIADYARRHGLEPSVDADGGLAVRIDGRHRVRLIPAEDGMLVLRARLAELPDGWQARAAQLRRAGLLASAMAP
ATDAYCGIDQGETALYLHQRVAPAGSALAVDEAVGEFVNALATWKRAMAQWQ
>SEQF2266_AEE67493.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGEKTERPTPKRLRDSREKGEVAHSRDFTQTALICALFGHFLINAPSILASLRALILAPAAFADQGFAVALGPVLTEIL
DQAVRVLAPLILIVLGVGMFAEFLQVGVVLAFRKLKPSAEKLNPAGNLKNIFSARNLMEFIKSVCKILFLAVLVTLVIRD
SLQPLMAVPHSGLDGLRTGVGRILQVMVWNIGLAYGAISLADLAWQRYQYRKGLRMSKDEVKQEYKEMEGDPHIKQQRKH
LHQELIMHGAAAQVRRATVLVTNPTHLAVALYYAAGETPLPRVLAMGQGAVAALMVEAARDAGVPVMQNVALARALHDQA
EVDQYIPGELVEPVAAVLRAVRQALKEQT
>SEQF2266_AEE67494.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHTEFNFVEAKVFLGTLAMTQPRILTAMLFLPMFNRQFLPGPLRYAVGACLGLIVVPQLAPQYAALDIDWPRLLALLAKE
AMVGMFLGWLAALPFWIFEAIGFVIDNQRGASLGAILNPATGNDSSPMGILFNLGFMVFFLTAGGFGLFATMLYDSFGLW
NIWAWWPSMPAQGAVRMLDQFSGFAARVLLLASPAIVAMFLAELGLALISRFAPQLQVFFLALPVKSALVLFVLVLYMAT
LFQYAGEILGSVGRIVPFLHSAWPGP
>SEQF2266_AEE67495.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTQDLVSFMTQALYLVLWLSLPPIAVVAIVGTLFSLLQALTQVQEQTLSFAVKLIAVFATLMLAARWISAEIYNFTIAV
FDAFHRIH
>SEQF2266_AEE67496.1 type III secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDTDPFSLALFLALLALVPLIVVMTTSFLKIAVVLALVRNALGVQQVPPNMALYGLALILSAYVMAPVVHRIGTEVQAL
TAQAGESGTAAPMALDAVLGVAERGVGPLRAFMLRNSQPAQRDFFLRTARHLWGEEASRDLSEDNLLVLTPAFLVSELTA
AFQLGFLLYLPFIIIDLIVSNILLAMGMMMVSPVTISMPLKLFLFVMVDGWTRLIQGLVLSYR
>SEQF2266_AEE67497.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRVAGGAAAQAAGMVDLAVPRLSAGEAHALSRIACHGARFDVRLGEPAVRWHCALTPCVHGDLADGEMESLQLQWAGTY
IGLTVPRAAAAGWLAARLPRFSGVELPEPIAAAALEAMLEEVCRGVAGLDQQGPVRVARQGGTPPVQPHRWTLTVRAPDG
GVWRAVLACDAWALQAVAAALDSVAPADGRVNPERVPVRLRADVGAASVTAGQLRTLRAGDVVLLAQYRVSDAAELWLSA
GPSAIRVRAEHASFRVTQGWTPIMTEPATPDPGETPAQADATLDTDQIPVRLTFDLGEREFTLAQLRSLHPGCTFDLERP
IADGPVMVRANGLLLGSGRLVDIDGRIGVVLQSVRPGLA
>SEQF2266_AEE67498.1 hypothetical protein BPTD_2204 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQPDGLGSPMAGGGQRMGVARTPYARQPDRDAQRAFEREMEQEKAKEELPGPQRLAPGPACVGWLASMEPAAGRPPASL
AQALASVAAGLAVGDVLEGYREARIVVDDTLLPDTTLSVREDGGWIVVAFACRQRDACERLHACADRLAMELALELARDV
EVAVACDGEPHERVARAQRPWR
>SEQF2266_AEE67499.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLESLLAIKHFRADQAQLALKRQQQACAVAAAAQRQAQGRLDDCRLWAGQLENRLYAELCRRIVKTRDIDEVLQRVGHA
RDRQASLALQLDDAVRRHEHEIQLLAQQREQHRECFQAQQRIAELVRLQQVEAAALRESQEDREIQEAIELSARGRDDAS
RAGDGLARL
>SEQF2266_AEE67500.1 type III secretion system ATPase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRQYHYITEMMRVALQDLSTLRIKGRVVQVVGTIIKAVVPMVKIGEVCLLRNPGEDFEMHGEVVGFVRDAALLTPIGDMY
GISSATEVIPTGRTHMVPVGPGLLGRVLDGLGRPLDAAESGPLHAHKFYPVFADAPDPLTRRIIHAPLELGVRVLDGLLT
CGEGQRLGIFAAAGGGKSTLLGMLVKGAAVDVTVVALIGERGREVREFLEHELGPEGRRKSVIVCATSDKSSMERAKAAY
VATAIAEYFRDQGQRVLFLMDSVTRFARAQREIGLAAGEPPTRRGYPPSVFATLPKLMERAGMNQTGSITALYTVLVEGD
DMNEPVADETRSILDGHIVLSRKLGAANHYPAVDVLASASRVMNAVVSPRHKYLAGRMRELMAKYQDVELLVKIGEYKQG
ADASTDEAIQKIGQINAFLRQLTDEREAFEDTVLRMAEIIGPES
>SEQF2266_AEE67501.1 type III secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFLVPRPSLIQAVRPGRADPATDVLRAEDYAELLSAAQIVAQAHRRAGEIVAEAREEFERERRRGYEEGRREALTDQAE
KMIETVSRTIDYFAGIENEMIELVMSAVRKIVDGYDDRERTVIAVRNALAVVRNQRQMTLRLHPDEVDVLREGMNQLLAA
YPGVGYLDLLPDARLAPGACILESEIGMVEASLEDQLCALRAAFERTFGRRG
>SEQF2266_AEE67502.1 hypothetical protein BPTD_2208 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEASVLLSERLMIFNLLPSLTLHASRHDEMFPADWVRALCNADAALANAWHRHWSRWILCELGLLNQPVLSLDPPQLKV
ALLSTDALRTCAAHAGALLCAPRLRRAIDGAEVRTLHAALGRDVMNFAVSSAARALHDGLAASSDWTLAATVQAAQKLGW
ALLRDAVQGAADEIALRCALKLPRDLDPAPVLPPEAALALVLSMLEILDAEWLSSFPAQA
>SEQF2266_AEE67503.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAIGAIQRYRRGAGWAALVLALALLAGCGARVELLGAAPENEANEVLAALLEAGIAAQKQSGKAGYAVSVPAEAVARSL
EILRASGLPREQFDGMGRIFRKEGLVSSPLEERARYIYALSQELADTLSQIDGVLSARVHVVLPERGAVGEPATPSTAGV
FLKYRDGQSLDALVPEIRKLVTHAIPGLAEDRVSVALVVAQPVQAAPAPVAWRRVLGVQVADGSVLRFSLLLLLLPVLCL
IVAGAALYVWRTRWSRGEGRGGAGAGATEGAGHD
>SEQF2266_AEE67504.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLDLTAINAVQERLLAGSFDMPRSPAMADQARFELALGEMPGASAPNGAIALAPVALDEPLGRRILGQLRGGLADVAGK
WRAVQTGLAEVSQAPTVVGMLDLQARLLQASVEYELVGKAIGRATQNVDTLARMS
>SEQF2266_AEE67505.1 hypothetical protein BPTD_2211 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHSDSGSDSGSDSGSGSPMVSSIHPSEPIQPMEHVLEEADARLLTEVGFLAAAVSDLTRADAIFNALQRVRPGRTHPCIG
LAVARMNAGLPDEAAEILANFQPAQPEDRSELDAWCGFALLLAGRSDEARRMLQRAIDAGGEAARLAQVVLDSGPAMMRP
APLQSEPLPGAPG
>SEQF2266_AEE67506.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVHDDAAAALRARLDALPGSRRLTAEQLEVIYAMAYAHVARCEYGKALPIFAFLAQYGPTRKHYWAGLALCLQKTDRPD
EARNIYALILTLYPDSADAVLRTAECELALGENERAQAALFGAIAIDAESGQPGPVSHRARALLDLISVSHPE
>SEQF2266_AEE67507.1 putative outer protein B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMTVMSTTISTAPSGAALAPSRIDMRAPEPGSAGEGAGILAPVTTLALAAGRPALPASPSLRTAPVLDPPVRDLSPADL
ADLLRVLRSRAVDGQLATARENLQDAQVKAKQNTQAQLDKLDAWFRKAEDAESKGWLSKVFGWIGKVLAVVASALAVGFA
AVASVVTGAAATPMLVLSGMALVSAVTSLADQISREAGGPPISLGGFLSGLAGRLLTALGVDQSQADQIAKIVAGLAVPA
VLLIEPQMLGEMAEGVARLAGAGDATAGYIAMAMSIVAAIAVAAINAAGTAGAGSASAIRGAWDRAAAVATQVLQGGTAV
AQGGVGVSMAVDRKQADLLVADKADLAASLTKLRAAMEREADDIKKILAQFDAAYHMIAQMISDMASTHSQVSANLGRRQ
AV
>SEQF2266_AEE67508.1 putative outer protein D [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVSPTSPGSFGAGPVFDSELQAPAPSAQRRGGAAPVPPPVDRRGVEPGDPTLGMLPAPDLLAGGAVSRTRAALDDLDAA
RLGEDIYALMAVLQQASQQMRDAARIARDAEATRQTQALGDAASQMRQAASERMAGAIVAGAMQIAGGFVQLGAGLAAGL
QAMGGAAAQAKGAAFSEQASTSRKVAAGLHDAPELQATVQARATQLEAQAASFGADAARSSAKSQRVSSVAQAGAAAAGG
IGGLTSAAQERRAAEHEARRAELDVEAKVHETASRRADEAMQQMLDIIRGIREKLAGMEQSRSETARSVARNI
>SEQF2266_AEE67509.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPKSADQGGSPASASHEALRHILDAGASMGGLQGLDEAQQQALYAIGHGAYEQGRYADALKMFCLLVACDPLEARYLLAL
GAAAQELGLYEHALQQYAAAAALQLDSPRPLLHGAECLYALGRRRDALDTLDMVLELCGSPERAALRERAELLRRSYARA
D
>SEQF2266_AEE67510.1 hypothetical protein BPTD_2216 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQEQGIQSIMRAAEELVEQTRQALYSVDEIYAHVGVDPARLRNLAVEQARIEAEAQAAFRDDLADIEREAARVKAACTDA
PQARRVLHNHV
>SEQF2266_AEE67511.1 putative secreted protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIDLGVSLTSQAGGLQGIDLKSMDIQTLMVYVQGRRAELLTAQMQTQAEVVQKANERMAQLNEVLSALSRAKAEFPPNP
KPGDTIPGWDSQKISRIEVPLNDALRAAGLTGMFEARDGRVTGPDGRGTQVVNGTGVMAGSTTYKELESAYTTVKGMLDT
ASNTQQMDMIRLQAASNKRNEAFEVMTNTEKRRSDLNSSITSNMR
>SEQF2266_AEE67512.1 putative outer protein N [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRIDAAPNPFHAAMQGRHDASANTSSGWLQGQRIAPAPTGISLADAAEELSLHMAQAAEEKHHSERKVTAERPMLWLDA
AQLAELFSHTHDPDAQAKLEALTAELLRGRGAPMQLAAQAFPGVTQQYLALQHALQRGEHEDAAPHALEALRDALADLEL
AHGPEIRAGINTLPTAGAFARSADELAGFQHAYRDIALGQLSLARTLDLVLERYGNDDIHGALGALIQALGHDLAAATPS
TDGVRLQVLASDLYQVEVAATVLEECNALKQRLGNAGSQECADAQGLMRDLVGISEDKWIAPARFEKLAERHGANALSER
IAFLGGVRQILKDLPTQIYADMDVRATVLAAAQDALDNAIAMENA
>SEQF2266_AEE67513.1 hypothetical protein BPTD_2219 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTADRALHQFGQDIGIEGLAFGPSGSASLALSNGRRLGVECVAGAALVHLAQRVERDAASVLLAAWKRAHGQRGSAASI
QTSLWSEGSEDWIVAQTRLPERSLDAAALRLAVLGLTNWLDRLEA
>SEQF2266_AEE67514.1 hypothetical protein BPTD_2220 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSAVPGMHAMHLGLERGVDHIVRGPRCEPAPTLPPERWLEPPATGAVDHLKALLVRPDLSAMLDESARPRLTDGALFQP
AQFERALAQARDELSRAMELHAGNTAPALSRALHVLNEAGKLRDLAAMYRSALYQG
>SEQF2266_AEE67515.1 hypothetical protein BPTD_2221 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMPHTLPSPSLQVRELLQLLAHHYQLQRQWSKTVALLAALDALDAIDSQSLLALALGYLHQGEPRMALVTLDKRALRATP
DAAGHLVRAQAMQALNRPDDARQAMRDYMALRAASCASATPP
>SEQF2266_AEE67516.1 putative type III secretion pore protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSKKSIRRLQRAVALATSRNDIVLAVLIVAIVFMMILPLPTTLVDVLIGANMTLSAVLLMVAMYLPSPLAFSSFPSVLL
VTTLFRLGISIATTRLILLQGDAGHIIETFGNFVVGGNLIVGLVVFLILTIVQFVVITKGAERVAEVAARFSLDAMPGKQ
MSIDADLRAGTIDMDEARRRRRTVEKESQLYGAMDGAMKFVKGDAIAGLIIVAVNLLGGMLVGVLQRGLSAGEAVQTYAI
LTIGDGLIAQIPALFIAICAGIIVTRVQTGDGPSNVGTDIGAQVLAQPRALVIAGAISAGLGLIPGMPTLVFFALAAAVG
TIGFVLLRASQRPPEGAEPALAGMAADGQPRTRAPADGQAEFAPTVPLIIDVAARLQPRFEPATLTDDLLQIRRALYFDL
GVPFPGIQLRFTEALAANTYTIVLSEIPVAQGMLRDDAVLVRDTEQNLQALRIAYETGAAFLPDTPTIWVAASLTGALRD
AGIPYLGISQILTWHLAYVLKKYSADFIGIQETRFLLSAMEERFPDLVKECLRVMPVQKIAEILQRLVSEEVSIRNLRAV
LEALVEWGQKEKDTVLLTEYVRIALKRYISHKYTSGHNILPAYLLAPKVEETVRAAIRQTAAGSYLALDPDTTRRLVEHI
RQCVGDLAAGASRPVLLTSMDIRRYTRKMIEADLYALPVLSYQELTPEINVQPLGRVDL
>SEQF2266_AEE67517.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTALEFRVLSGAQCMARCPAVHGARVGANPHCDIVLTGEDMPEVAGWLEIDQSGWRLAGAVTPGLDAQAPCPPAAFNEP
VELGAAWITVAAPSAPWPAPPEPCGPDGSDTALHDVPGSTSPPSVAALMPRRRAGRPWLALGAAAAVLLVGLATALVSVT
TPATPPAAPPPTPTAPLVRAAALIDSLGLTEQLQAAYGRGGVLTVTGWVHDETEFARVARALAQLAPRPAMQVSRQDEAR
ALACDVLATFGVRYMARPYGNGRLAISGIASDAHERAAALHAVRMRLPGMTILGRDVRLADEVSAQFAAQLADERLDGVK
LSWHADRLDADPGGLAAGRMARLRELVAAFNQRNYDVVRLPATAARATRDHVPFEIRSVVSGPQPYLMLADGSRLLVGGL
RDQYRLTAIESGRLVFDGPEPVIVTR
>SEQF2266_AEE67518.1 hypothetical protein BPTD_2224 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSVLALTELEVRLASPGGSALRDTLLSQLGELETRLRVRLHDGVGRDTYPVWRDALAAATAARQVLLQRPTGPDNPPA
SVLTRLSNEQCAEGDKHGH
>SEQF2266_AEE67519.1 putative type III secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAINLGGDAGRVTMQSVNQAVNTRLNAHERDLRSRLEALSARGDGAVSTSDLLIVQQEMQSWVVMIDLQSTVVKQVADSL
KGVIQKAS
>SEQF2266_AEE67520.1 hypothetical protein BPTD_2226 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPTQARLAMTDTAYHQLIADFGRLIGIDSLNPGAGGLCQLIFEPCAPVFIAPVHARTEIMISCVLGTADAANPASMARA
NFMQAGSGVVACIGGDGLFYLQQAIPLSRATPAILLDHCERLLQEASRWRVGDHDGCATSAPNIAALTRGV
>SEQF2266_AEE67521.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67522.1 transcription elongation factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAIPLTVRGAERLQQELHRLKTVERPAVISAIAEARAQGDLSENAEYDAARERQGFIEGRISELEGTLSNAHLIDPTAL
DAEGRAVFGATVEIEDLDSGDRLTYQIVGDVEADIKSNLISVSSPVARALIGKSEGDVVEVKVPAGVREYEVIGVRYL
>SEQF2266_AEE67523.1 methyl-accepting chemotaxis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPMLERIKVRTAMVAVFACFLAVLMLSGALTWRNAGRSAAEIEGLNQVAVNQVDPLFEASGAAQRQAATQFQRYVDVPKE
PAAAELAATLQTRWRAYQSVLDELAAAVDAGQAEPALAAMHRAQQAEHAFQRDMEAFLARVQAHSDEVRSGAEDTHVVAR
WSAIALTTLGVLLTLAGWLFVRRAVLRPLLEAGHHFDRIADGDLTARIEVRSANEIGALFAALKRMQEGLTRTIAVMRRG
VDEINVGAAEISAGNANLSSRTEEQAAALEETAATMEELATTVKQNADNAAQANQLAAVSMQVAQRGGESVAQVVQTMHG
ISASSRQIADIVTVIDGIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRSLAQRAAQAAKEIKALIESSVATVRAGSQ
QVASAGGTMDEVVASVQRVADIMGEISAASAQQASGIDQVSLAISQMDETTQQNAALVEQAAAAATAMEEQARHLAAAAA
VFRTQGGAIIDVAAAPLAGPAGGHAALPPAAAH
>SEQF2266_AEE67524.1 xanthine/uracil family permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNTYFPRWRLADDTVPGAVIAPDERLSWPKNIAMGAQHVVAMFGSTVLAPLLMGFDPNVAILMSGIGTLIFFLFVGGRV
PSYLGSSFAFIGGVVAVTGYVAPGANANIGVALGAIIACGLVYALIGLVVWAASARGNGARWIEAMMPPVVTGAVVAVIG
LNLAPIAAKGAMGSSGFEASMALMTILCVGGIAVYTRGMVQRLLILVGLVLACVIYAVCANGLGLGAPMDFAKVAAAPWF
GLPSFAAPVFEPQAMGLIVPVAIILVAENLGHVKAVAAMTGQDLDRYVGRAFVGDGVATMVSGAVGGTGVTTYAENIGVM
AVTRIYSTLVFVVAAVIALVLGFSPKFGALIQTIPGPVLGGMSVVVFGLIAIAGARIWVVNQVDFSDNRNLIVAAVTLVL
GAGDFSVKLGDFSMNGIGTATFGAIILYALLGLARRR
>SEQF2266_AEE67525.1 putative regulatory lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQALRPVLAAAIMAACAPALAGTVTVITSFPKDLTQAYKAAFEKAHPDIKLEILNKNTVSGIAFVRETPAGQRPEVFWAS
APDAFEVLGRDKLLAKAPDVANPAVPDKIGSYPINDPSGMYMGQALAGYGIIYNTRYIKANKLPAPVEWKDLLAPHWFGH
VGITAPSRSGTMHLTVETILQGEGWNDGWGTLLRMSGNASAVTERSFGVPDSVNNGQFGAGPVIDFFGLSSKYSKFPVDF
VYPSETAIVPANIALIEGAKNTEEGKQFIAFTLSQAGQELLLEPKISRLPVLPYAALAGKIPPGYPDPAEIAKRSKVHFD
ADLSQARYYVVQSLFDQTITFRLKDLQAATKAIYDAEAKLGERAGQGKAAELLAQARQLAWTPLVDAERAADPAFLKLFA
GNKKDAAVNQQITQLEGEWNGKARANYEQAQKLAREAAAL
>SEQF2266_AEE67526.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67527.1 putative periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRIPSILLATVLAAATGVAAANTTLTVYTALEADQIKAYQAAFEKAHPDIRIQWVRDSTGIVAAKLLAEKNNPKADVIW
GLAGTALGLMDKEGMLLPYAPKGLDQIAANMRDGKDVPAWVGMDAYAAAVCVNTIEASKQNLPMPTSWQDLTKPEYAGKI
VMPNPASSGTGFLDVSAWLQMFGEEKGWAFMDALHKNMGSYTHSGSKPCNMAAAGEYPIGISFDYRAAKLKADGAPVEAV
FPSEGLGWEVEATAIVKGTKHLEAARKLADFSASRQANELYKSNFAVLAIPSVATVNPHLPANLSERMIKNDFVWAATNR
DRIIAEWSKRYDGKSEPKKK
>SEQF2266_AEE67528.1 phosphonoacetaldehyde hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAMTLATLPVRLEALVFDWAGTLVDFGSFAPTKVFVDAFARFGVQISLEQARGPMGMGKWDHIRALCNDAAIARQYQEQ
FGRLPTDEDVTAIYERFLPMQLEKVAEYSQPIPGAIELLHGLRQRGLKLGSCSGYPAAVMQRVLERAEREGLALDYVVAS
DDVPRSRPAPAMALRNVVELGIADVAGCVKVDDTAPGVEEGRRAGMWTVGLLLSGNAAGLSLEQFLSLDEAGREAARDRA
RAELQAGAPHYLIDTVADLPPVLADIETRLAAGQRP
>SEQF2266_AEE67529.1 putative ABC transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRALPAWTGTLGRWGGQGLFVAALVLFLALPLLAILVKAVAPGADGAAGVGVLAGIVDDSAFLGLVWRSLAVGAATVAL
VVPCAYAYAYCLTRTRAPGKGALRLVALLPLLAPSLLPGIALIYLLGNQGLLKALAGGATIYGFWGIVIGEAFYTFPHAL
MILLTGLALADGRLYDAARAMGAGPWRTFATVTLPGTRYAVFSACCLVFTLTVTDFGVPKVVGGDYNVLAMEAYKAVVGQ
QNFSKGAAIGLLLLLVPAMLTFLLDRHLRARHGAGLSGRALVYAPGTHRLRDACFLAIAALIGLALLTIVGVAVWASFVK
MWPYNLSLSLRSYDFDNMDGGGWLAWRNSIQLAAWTALAGTALVYGGAWMMEKLPTRGVPAAALRGTARMLALTPMAVPG
LVLGLGYIFFFNSPGNPLGALYGTMTLLVVCTVVHFYTSAHLTAVTALGALDTEFEAASASLKVPAALTFLRVTLPMCLP
AVLDTARYLFVSAMTTVSAVVFLYSPQTVLAAVAVLNMDDAGFIGPAAAMCTVIMATSALASLLLHLASRALVARTQAWR
RAPAA
>SEQF2266_AEE67530.1 putative ABC transport ATP-binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRGSDAFLSIRNLVKHYGAHRALADVSLDIGAGELVCLLGPSGCGKTTLLRAIAGLERQDGGAIVLGGRDISNEPPQAR
DYGILFQSYALFPNLTVAQNVAYGLSGRRGDRERVAARVDEMLALVGLSGAARKYPGQISGGQQQRVALARALAPAPSLL
LLDEPMSALDARVRDRLRGELRALQRRLSITTLMVTHDQEEAMVMADRIAVMNGGVIEQYGTPRELYRDPRSAFIADFVG
EANWLRYQRIDAHRARVGQLELDVEQPLEADSGRLFVRPEAVRLSASGTPASANTVLADVLDGVFLGRGYRISLRLEGIP
GATVQSVVSAETGDALLGAHAAGRCWVELPRHALSAYA
>SEQF2266_AEE67531.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVAELKSFHAVARCGTVTKAAAQLGVSQPTVTGQLRQLESRYGVELFHRQGRGLRLSDAGHRLMPLVEKLVQQESEIEF
RLRDASDLREGCLRVGATGPFYIMDTVRRYNQRYPAIELSVAIGNSQSMLQALHDYRIDVATSSVAMNNPNLYRRAIAAD
PLRIVVHRDHPLAARASAGLADLAPYALLLREPGSMTRQLTEEALQKAGVAPARVLEIGSRESIRQAILCNLGVSLIPSR
EVPAQAELATVAIADTEVLMHEYLYCLRERQPVQLIARFLELAPSAA
>SEQF2266_AEE67532.1 hypothetical protein BPTD_2239 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALTLQDIEQIFLERGHRAYDGEPVSHLKHALQTATLAEQGGAGPHLITASLLHDLGHLIAAHPGTPSLRGLDDKHQYFV
LPFLRGLFGNAVLDPIRLHVEAKRYLCFVEPAYATRLSADSRRSLTLQGGSFDAGQAVDFASMPGAPDAIRLRRWDDQAK
QPGMQTGSLTHFLEIAEGVAGRAKLAAIW
>SEQF2266_AEE67533.1 putative sulfurtransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMTLISAADLTARLDAGGVRVFDVRHDLADHAAGRRAYEQGHIAGARYLDHEAELAAPRSGSNGRHPLPERDAFAGLMA
AHGVTPETLVVAYDASGGMFAAHLWWMLRWMGHERVAVLDGGWQAWTAAGLPTEAGATPAVSAQPGARAGQSLAGTVDAA
AVLANIGQPAFTVIDARAANRYRGEVEPMDPVAGHIPGALNRPNTENLQADGRFKAPAQLRQEFEALLGGRAADGIVHQC
GSGITACHNLLAMEIAGLAGSRLYPGSWSEWCSDAARPVAKGA
>SEQF2266_AEE67534.1 heat shock protein HtpX [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRIFLFLITNLAVMVVLSATMRILGVDRFLTAQGLNLTGLLIFSAVIGFTGAIISLLMSKPMAKWSTGARVIDPNAPAN
QREAWLLDTVHQLADRAGIGRPEVAIYQGEPNAFATGAFRNDSLVAVSTGLLDSMTEEEVAAVLGHEVAHVANGDMVTLT
LIQGVVNTFVVFLARVVGYFVDRAILKNERGVGLGYYATVIVCEIVFGILASIIVAWFSRQREYRADAGSAHLMGSREPM
IRALARLGGLEPGELPKSFEASGISGKNGISAMFASHPPIQARIAALQHARLG
>SEQF2266_AEE67535.1 quinone oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASNIVKAVRIEQHGGPEVLQVVDVEVPPPAANEVTIRQHAAGLNFIDIYFRTGLYPHPLPHGLGFEGAGVVEAVGADVR
HLKKGDRVAYGQSPLGAYAQARNVPAAQVVKLPKGIGFDEAAALMLKGLTVQYLFRQTYRLQGNETILFHAAAGGVGLIA
CQWAKALGVKLIGTVSSPEKAELARAHGAWATIDYSRENVVERLLELTGGKKVPVVYDGVGKDTWEISLDCIEPRGLMVS
FGNASGPVAGVNLGILNQKGSLYVTRPSLGVHVNTHEKLAAAADELFGLVLKKKIKVRIDQRYSLAQAGDAQTALAGRKT
TGATVLTLD
>SEQF2266_AEE67536.1 hypothetical protein BPTD_2244 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRNRQLSDPSRFSGMAAGFFMATLGAVLFSGKAIVVKFTYRYGIDAVTLIAFRMLFAMPFFAAVAWWQARRAARGELPV
LSWRERGQLCALGLLGYYLSSFLDFLGLRHITAGLERLILFLSPSLVVLLSAWWLKRPVTRRQWGAMLLSYVGVALVLSH
DLSQSGAGADVLTGSFFVFCSALSYSVYLICSGELVERVGATRLVTYAMLVSCVASLIQFFLIHPASVLVQPAAVYGYSV
IHATVNTVLPVFMLMWAVALVGAPTASLLGMVGPVSVLFLAAWFLDEPITVWQLAGTALVLAGVFVLAGRRRPARP
>SEQF2266_AEE67537.1 hypothetical protein BPTD_2245 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRQRALVYIHIAAVLFGLTGVFGELIQAGAAVITLGRALFAVGALAVFARMQRRSLLGVLTPAQLFVLVIAGCLLAAHW
VTFFISVKVGGIAIATLGFASFPAFITLFEGLVFRERVRLAEWLLLGLVTAGLVLVTPSFDLADQGTVGLVWGLVSGFSF
AMLALTNRRAAAGMDPMQVACWQNAVVALVMLPFAVVHLPALHALDWLWVALLGIFCTGLSHYLFVSSLTRLNARSAGLV
IALEPVYAIGFAWILFTQVPTLRMLAGAALIVAAIVWSGLRKSTH
>SEQF2266_AEE67538.1 MarR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPPRSASSEPFAHYRADSICTRDDNAGFLIKLVSNSLNRMLDLEMAPLGLTAMQWRPLAMIASGRADTPAELARLINVD
TGAMTRTLDRLEAKGLLRRVRSQEDRRVIKIELTPEGQTKAREIPAYIAKVLNHHLRGFSTEEVAQLQHMLRRMIANGSV
GG
>SEQF2266_AEE67539.1 putative multidrug resistance protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPSPTTHPARKRLLWLATGVFAVLAIAYAVWWALFGSHFESTDDAYVHGNLVQITPQVPGTVVAIEADDTEAVTAGQAL
VRLDPADTDVALQQAEARLAQTVRQVRTLYVQNDALAADIDVRQAEIARAQADLKRAQSDLQRRQTLAKSGGVSGEEILH
AETALKSAQSALAQARANLAAAQAKLATNQALTEGTTVAEHPDVRNAAAQVRNAWLNRSRTVLPAPVDGIVARRAAQVGQ
RVAPGAMLMNVVPLDQIWVEANFKEGQLRHMRIGQPARITADLYGGSVVYDGKVIGLDAGTGSAFALLPAQNASGNWIKV
VQRVPVRIALDPEQLKTHPLRVGLSMDVEVDVGAEEGQPVTAAPRAEPALSTQVFEPAHDEADALIARIIQANLAS
>SEQF2266_AEE67540.1 putative multidrug resistance protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDKPKSSAGGAPYPPLEGATRIIGSIALSTAVFMNVLDTSIANVSIPTISGDLGVSTSQGTWVITSFAVANAITVPLTG
WLTQRFGQVRLFLTSTLLFVLASWLCGFSPTLEALIGFRVLQGAVAGPMIPLSQALMLASFPKHKAGMALAVWSMTTLVA
PVAGPLLGGWISDNYTWPWIFYINVPVGLLAAWISWRVYRDRESQTRKLPIDKVGLLLLVVWVGALQIMLDKGKELDWFA
SPVIIALAATAFVAFVFFLIWELTDAHPVVDLRLFKERNFTVGALTLAVAYGVFFGNVVLLPLWLQSNMGYTATYAGMVT
APVGLLAILLTPIVGKMLATRDPRQIVTVAFMVFALVCFMRAGFNTQTDVRTLMVPTIIQGAAMAMFFVPLTSITLSSLD
ASRIPAASGLSNFARLTAGAFGTSIATTMWDNRANLHHAQLTEITTPGQQAFDHTLGTLQNGAGMSHQQALTVINGMIDT
QAYTLSALDVFYASAAIFLLLTGLVWLARPKSAKSAGGGAAEAAAGAH
>SEQF2266_AEE67541.1 tartrate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAKHRIAVIAGDGIGKEVMPEGLRVLEAAATRFGIDFQWDHFDWSCDYYARHGKMMPDDWAAQIGGHEAIFFGAIGWPD
AVPDHEALWGSLFRFRRDFDQYINLRPVRLMPGVPTPLANRKPGDIDFFIVRENTEGEYSNSGGRLFAGTEREVVIQESV
FTRVGADRVLKFAFELARKRGKHLTAATKSNGISISMPWWDERVAEMAASYPDVRWDKYHIDILCAHFVQHPDWFDVVVA
SNLFGDILSDLGPACTGTIGIAPSANLNPERKFPSLFEPVHGSAPDIYGKGIANPIGQIWSGALMLDFLGYPQAAAAVVA
AIEQVLVDGPRTPDMQGKATTTEVGSAIAALVAAG
>SEQF2266_AEE67542.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRELILSECLLQRLERRGATPLSRQIYDLLRDLILAGDLPAGTKLPATRALAVDTGLSRNTVLHAYDQLLAEGYLVSAFG
SGTFVSDTVPATPEPPAPPEVEAAAQHFALSRRGTKLVREASASDRQWGAFVAGVPDVSLFPRAVWQRLQSRRWRQAPPE
LLTYAYGAGYMPLRRALAEHLRLSRSVKCDADQIVVTSGIHQAVSVLARLLGDNGNTAWMENPGYWGARSTLMACGITPV
AVAVDDEGMAPSAQQLQDPPRFIFVTPSHQYPLGMVMSLARRRMLLDYAHKRGAWIVEDDYDSEFRFDGRPIASLQGLDQ
HDRVLYLGTFSKTLFPGIRLAYMVLPKPLAGHVATGLSELYREGRLMDQAVLADFIEGGHYATHIRRVKQRYAARQALLR
EAVTRAFGADWPISTHEAGLHLVMRLPDGTDDLGISIAARTLGLHARPLSRYYASEQDARPGLLLGYACVPEEEIEPAFE
RLVQVITPALEHVERQQRRPVYSDKLNAEAWSGA
>SEQF2266_AEE67543.1 putative solute-binding transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLTQLFKLSAAAFTLAAALPLTNAHAQTRDGTLNLIVQPEPPILIPALNQQGPTQFITGKIYESLLTYSFYLKPQPGLA
KSWEAAPDGLSYTFHLQEGVKWHDGKPFTADDVVFSLSDLLPKTHARARVILGKFLDKVEKVDDHTVVVRLKSAFPAFML
MFEPGFAPMMPKHIYAGTDYATNPANQKPIGTGPFKFKEWKRGEYVKLERNPDYWKEGKPYLDELVFNVIPDSASRAVAF
ERGSIDALRGGDVDNVDVKRLRGLPDVQYTTQGWEMFSPQAYLIFNMRKPPFDNIKVRQAVMHAFNRKLVVDNIFFGLGK
ISTSPFVPTEMFFDKNIPAIPFDMKKARALIKESGINPGDYTIRQLSFPYGATWDRLGEYTKQALEQLGFKVNVESTDAG
GWASRTGNWDFDLTTTYSYQYGDPALGVQRLYVTSNIVKGSPFANVQGYSNPESDKLWEQAAAEVDPAKRQELYNKIQAI
LVAEVANGFLVDMEFPTLYRSKVKNMVKTAIGMNETFDDVYIEK
>SEQF2266_AEE67544.1 putative integral membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHRMKFLSFFASRLGKALVVVLGVVIINFFLIRMAPGDPAAVLAGQVGAGDAAYVEQLRTQFGLDKPVLTQLGIYLKGVL
QFDLGFSYRNHVPVLDLIVERLPATFLLMSAAFLFSVILGVLLGVVAARARYANKRRWIDSSVMTGALLLYATPLFWLSL
MGILLFSVMLGWLPAFGMETVGSNLTGWARVQDIALHLILPTVTLGCFFMAVYVRLTRASMLEVIGMDFVKTARAKGVSA
NRVIRAHVLRNALLPVITFAGIQLGQMAGDAVLTETVFAWPGIGRLMFDALLQRDYQLLLGIFLVTSIMVVVFNLITDVI
YRLIDPRIAAGGTQGAAA
>SEQF2266_AEE67545.1 putative integral membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNGFMKRYMRNYGAVAGLVIVALVVLVALCAPLLYEESPWMMVASPLIPPFTDSAYPFGTDMLGRDITAGLVWGARVSLM
VGLLSAGVALLFGIAIGAIAGYCGGRIDDALMRFTEFFQTIPQLAMAVVLVAVVGPSVYSIMGAIALVSWPPAARLVRSE
FMTLKQREFVQAAIVIGQTPGRIVCTQILPNAMSPIIVSASFMVATAILTESSLSFLGLGDRNLMSWGFMIGAARTMIRE
AWWMSVWPGVAILLTVLAINLIGEGLNDALNPQLRKRGE
>SEQF2266_AEE67546.1 putative ABC transport ATP-binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMNDQETLLSVRDLTIALPRGGDREYAVRDVSYDIRVGEILCIVGESGSGKSMSANAIMGLLPDYLQPQGGQILFRGKD
LLRQDEATLLSMRGKDMAMIFQEPLSALNPLMTVGEQIGEVMRVHDAYPGPQRQRRVLELLAFVGLPDPAVLCDVYPFRL
SGGQRQRVMIAMALALEPALLIADEPTTALDVTTQAQILALIARIQKEKGMGVMFVTHDFGVVAEIAHRVAVMEQGILVE
QGPAEEVLNRPQHPYTRRLIAAVPHRRADARPPVAQDAPVLAVDKLCKTYVTGHGWFGKKRVVRAVDEVSFEVRRGETLG
IVGESGSGKSTIGKCLLKLIGIDGGKLVFNGRDIAGLSESQFRPLRKDIQMIFQDPFASLNPRQTVGRIISDGPVANGKT
RAQAEARARELLTLVGLDPSAFDRYPNQFSGGQRQRIGIARALALEPQVLVADESVSALDVSVQAQVLQLLHELQQRLRI
ALIFITHDLRVAAQICNAVLVMHRGKVVEYGTPAQIFDQPQNPYTQQLIAAVPGQHWDPTKAQTA
>SEQF2266_AEE67547.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67548.1 aminobutyrate aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDNAELTRRKEAATPRGVGVMCNFYADRAENAELWDTEGRRYIDFAGGIAVLNTGHRHPQLMQALQAQMSRFTHTAYQIV
PYASYIQLAERINQLAPGDFAKKTALFTTGAEAVENAVKIARTATGRPAVVAFGAAFHGRTLLGMALTGKVVPYKVGFGP
FPADIYHVPYPNALHGVSTDDALAALGTLFKTDVDPRRVAAIIIEPVQGEGGFNICPPAFMQALRALCDDHGILLIADEV
QTGFGRTGKLFAMEHYGVAADLTAMAKSLAGGMPLSAVCGRAEVMDAPPPGGLGGTYAGNPLAVAAALEVIRIIETEDLL
ARGTRLGHQLRDHLEAQRHDAPEIAEVRALGAMVAVEFRQPGSDAPSPEFARQVQARALEQGLLLLTCGSDGNVIRFLFP
LTIPEAVMREALDILARTLRGQNA
>SEQF2266_AEE67549.1 hypothetical protein BPTD_2258 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRPGAIPTVQIDNERVKVTEWRFPPGGETGWHRHSMDYVVVPMTTGPLLLETPEGSVTSQLTRGVSYTRPEGVEHNVIN
PSDTEFVFVEIEIKAA
>SEQF2266_AEE67550.1 putative acetylpolyamine aminohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHVPEQFMRLGRISAPTDVPARAETLRAMLASRGVTVDSPPDYGREPLEGIHSHEYLDYLEHAYTRWQAMRANGADPGPE
VLPNLSPYYNGRVEHAARGPCPSTSIVAETGYYLSDLSCPVGPHTWRSALRSTHCAVAAADWALQNQALAYALCRPSRHH
AHRDRAGGFCYLNSSAAAAQRLAQRCERVVVLDVDAHHGDGTQNIFYQRSDVMTISLHADPSGYYPFYTGYAHERGYGSG
HGYNLNFPLPHGARNAIFLETLDSALTALRDYRPRALVLALGFDTYKDDPISVLKLDMDAYRQIGERINGLGLPTVVVQE
GGYMVPAIGPALEAFLQGMAPATV
>SEQF2266_AEE67551.1 allantoate amidohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTATALSINGQRLWDSLMELAKIGATPKGGNCRLALTELDGQGRDLLVRWMREAGLEITVDQVGNIFGRRPGARPELPS
VATGSHIDTQPTGGKFDGCFGVLAGLEVMRTLQDHDVRTEAPLELAIWTNEEGTRFVPVMMGSGVFCNIFPLETALAATD
VDGKSVRDELARIGYAGDAPVGQRKLGKYFEAHIEQGPILEAEDKVIGVVTGSLGLRWYDVTVTGMEAHAGPTPMPMRRD
ALYAATHLMQEVVRIALDYAPQGRGTVGVANVYPSSRNVIPGKVSFTVDLRHPDAARLAEMDARLRQACQALGAGDTTGY
PVGVDLRDVQHFPPTPFEPALIGAVRQQAEARGYSHMDIVTGAGHDAVYVATVSPTAMIFVPCKDGISHNEVEDADPAHL
EAGANVLLGAMLQHAGMVER
>SEQF2266_AEE67552.1 hypothetical protein BPTD_2261 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAPAPAPAAARQRRLGIALFFGALVAFATFDAACKYMLQFYPAPFLNVMRYTAVATIAAFMLLRHGLPRLSATPRRGLLV
VRGLMLGTVGTCFMTALIWMPLSETTAIYFTSPMIMVALSPWLLGESVGRAQWLAVAVGFGGMLLIVRPGADLPALGTVL
MAVAAVSYAIFQLLTRKLAGQVPGHVQYAYTAFICLLMTALPAPFFLPQPWPGLADSLVIIALGLCNGLAQILLIGAFQR
VEASTLAPLNYCHLLMAVAFSTFWFGMPPDAPATAGMALIVAAGIFLVTRRAPGTPRLPVRDKESAA
>SEQF2266_AEE67553.1 putative aldehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTLPPLSHWESLAAGLTLRNQAFIDGRWHDGQAGPLAAINPATGQLLAEVTACSQADIDQAVAAARRAFESGVWSRMPR
RERKQCMLRLAALIREHAEELALIETLNMGKPIGDTMAFDIPETAHTYAWYAETIDKQYDEIAPTDADALATITREPLGV
VAAVVPWNYPLLMASWKVAPALAAGNSVILKPAEQSSLSALRLAELALQAGIPAGVLNVVPGAGPVAGRALGLHMDVDCL
AFTGSTATGKRFMEYSGQSNLKQVWLECGGKSPHIIFDDCPDLDRAALAAAIGIFNNQGEVCIAGSRLYVQAGIYDTFVS
KVEACARAMQPGNPLDPASPMGAMVDERQMARVLEYVESGRREGARLRMGGERVRADSGGYYIEPTIFECARPDLTIVRE
EIFGPVLAVTRFDGEDEVVAQANASAYGLGSGLWTADLSRAHRVSRRLRAGLVWVNCYFDGDVTVPFGGVKQSGFGRDKS
LHALDKYTSLKTTWIRL
>SEQF2266_AEE67554.1 putative 2-hydroxyacid dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIIYASCNAIDPREWTEPLQAALPEAEVVAWQASQPVQHAELAVVWNPPAELFERELGLRAAFNLGAGVDALFRLETLP
PDFPVVRLEDAGMAVQMAEYAAHALVRASRQFDAYDAQQRAGQWHPLPELDRTQWPVGVLGMGVMGTRVAQTLAGMDYPV
AGWSRSGNAPQGVQAFGGADALPAFLARTRVLVNTLPLTDETRDLLRRDTLSQLLPGAHLINMGRGEHLVEEDLLALLDS
GHMAGAALDVFREEPLPAGHPFWSHPRVAITPHIAAISLRRETVAQLAAKIRAFLRGEPVTGMVTRRRGY
>SEQF2266_AEE67555.1 aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGPRIITHGEGVYVFDDQGNRYLEGMAGLWSVAVGFGEQRLVEAAARQFQELPYYHTFTHKSHPSVIALAERLIGYTDGR
MAQAFFTNSGSEANDTVVKLVWYYNNALGRRDKKKIIARQRGYHGVTVASASLTGLPGNHKDFDLPLPQIRHTACPHYYR
YGLPGETEEDFATRMAGELEAMILREGPDTVAAFIGEPVMGAGGVIVPPRTYWQKIQAVCRKYDILVIADEVITGFGRLG
QRFGSQVFDIEPDIMVLSKQITSSYQPLGAVLLNTRVADVVAEHSGRLGTFGHGYTASGHPVATAVALENLRLIDERGLI
EHAAEMGALLHQELQALSSHPLVGEVRGVGLIAGVELVADKATRQPFDPLGKAGGYAYERAHDHGLIVRGIQDTVAFCPP
LIITAEQVRDMVARFARTLDDVAAHVAQG
>SEQF2266_AEE67556.1 putative sodium:alanine symporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
METVMHFLDSIVDSVNGLVWGPLMLVLILGTGLFLMLRLRFMPLAKIAAGFRLAWGNRAKGDADTGEISPFQALMTSLAA
TVGTGNIAGVATAIFLGGPGALFWMWVTALVGMATKYSEVLLAVHFRERDARGEFTGGPMYAIRNGLGPRWAWLGTLFAL
FGGLAGFGIGNMVQVNSMADALGTSFGIPDWATGVATMVLIGMVVLGGIRRIGAVASALVPFMCVAYIVAAVISLILMAD
AIPAALALIFTHAFSPAAATGGFAGAAVMAAMRYGVARGIFSNEAGLGTAGIVQAAGTSNSAVQSGLIGMIGTFIDTIVI
CSMTGLVIVCSGMWTGGESGAALSAAAFDAAMPGIGHYVIAVALTIFAFTTILGWSYLSERCWEYLTGVRAILPFRIVWV
VAVPFGAVAKLDFAWLLADTLNGLMAIPNLVALVLLSPVVVKLTRAHFSRG
>SEQF2266_AEE67557.1 ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHATAHKRRPRLYTWASDFAPFRRAVMPDPIVIAKNAQTELALLPALANRHGCITGATGTGKTVTLQVLAEAFSRIGTPV
FMADVKGDLTGISQAGTASPKLQERLKNLGLPEPAWGASPVSLWDVFGEQGVPIRATVSDMGPLLLSRMLELNDTQEGVL
TLVFRVADDEGQLLLDLKDLRAMLQNVADRSAELKTRYGNVSAATVGAIQRGLLRLESQGAEQFFGEPMLDVHDLLRTDA
QGRGMVNILAADKLMQAPRLYGVFLLWLLADLYEKLPEIGDPEQPGLVFFFDEAHLLFNDAPSALLDKIEQVVRLVRSKG
VGVYFVTQNPLDIPDTVLGQLGNRIQHALRAFTPRDQKAVKTAAQTMRPNPGLDIEAAITELGVGEALVSLLDAKGRPTP
TERAWILPPGSRIGPATDAERQALRQAMPLAPKYEQTVDRESAYEVLTARAAADAPATDGARAPAGKNGAPAAPAEEGGL
MQGINEVLFGSTGSRGGKRDGVVQSVAKSTARQMARELVRGVLGSLLGSRRR
>SEQF2266_AEE67558.1 hypothetical protein BPTD_2267 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGHSKWANIQHRKGRQDAKRGKLWTKIIREITVAARAGGADPDSNPRLRMAWDKATDANMPKDNIQRAIQRGAGGADGE
SYEEVRYEGYGIGGAAVIVDCMTDNRTRTVAEVRHAFAKHGGNLGQEGSVAFMFKHCGQFVFAPGTSEETVMEAALEAGA
EDVATDEEGVIEVVCAPADFTAVRQAFEAAGLKAEVDGVVMKALNETELTGEDAVKMQKLLDVLESLDDVQEVYTNVVFD
EAQ
>SEQF2266_AEE67559.1 phosphoribosylamine--glycine ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGNLQKPRNMKLLVIGSGGREHALAWRLARSPRVHKVYVAPGNGGTAQGEQLENVPLTSAEELADFVQREGVSLTVVGP
EAPLAAGVVDVFRARGLKIFGPTKAAAQLESSKDYAKAFMVRHAIPTARYETFTDPAQAHAYVDQHGAPIVIKADGLAAG
KGVVVAMTLDEAHGAIDAMLGDGSLGEAGARVVIEEFLTGEEASFIVMCDGRHVLALATSQDHKRLKDGDAGPNTGGMGA
YSPAPVVTPELHHRIMREIILPTVQGMARDGIPYTGFLYAGLMIAAGDDPDRPIKTLEYNCRMGDPETQPIMMRVKSDLL
DAFEHAVDGTLDQADIVWDRRTALGVVLAAHNYPATPRTGDVIAGLPAATEDCVVFHAATALDGDATKTTGGRVLCVTAL
GDSVRIARDRAYEAVDAIHFDGRQYRTDIGWRALKPSQQKAPKPTA
>SEQF2266_AEE67560.1 coproporphyrinogen III oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAVAIPAVRDYLTDLQGRIVAALEQAGGEAFRTDAWQRAEGGGGVSRLLEGGQLFERAGVLFSHVKGTRLPPSASAHRP
ELAGRGWEAMGVSMVLHPRNPYVPTTHMNVRMFVAAARPGHAESDVFWFGGGLDLTPYYPFEDDARHFHRACRDALDPHG
ADYYPRYKQWCDEYFFLKHRNETRGIGGIFFDDLNEPGFDASFALTCSVGDSFLPAYLPIVQARRDMPYGERERDFQAYR
RGRYVEFNLVFDRGTLFGLQSGGRTESILLSMPPLAQWRYDWQPQAGTPEAALAEFLRPREWV
>SEQF2266_AEE67561.1 putative nicotinate-nucleotide adenylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGVTRIGLLGGSFDPVHVAHIALADTARQFLGLDQVQLIPAANPWQRQPLKASAPHRLRMLELAIAGHPALAINPVEIER
GGATYTADTVRALPGGPQYFWLLGTDQLQNFCTWRDWQDIAARIELAVATRPGASIAPPAELAAWLAAHRRQLHELPFAP
MAVSASDIRQRLAAGAATDGLLPEPVAAYIATHHLYR
>SEQF2266_AEE67562.1 hypothetical protein BPTD_2271 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDIQKLQRAIIDALEDVKAQDIKVFNTSELTSLFDRVIIASATSNRQTRALASSVADRGRALKLTGITVEGEDTGEWVVV
DLGYIVVHVMQPAIRQYYNLEEIWGGKPVRVKLLPESTRPAMPGAGAL
>SEQF2266_AEE67563.1 rRNA large subunit methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLIVAAVGTRMPGWVETAWDDYAKRLPADCALELREIKPEPRTSGKTPAQMMAAEARRIETALPPGVLRIALDERGRDL
TTVALSQQLEKWRAGGRDVAFLVGGPDGLDAALKASCEGLLRLSSLTLPHPMVRVLLAEQLYRAWAIMTNHPYHRA
>SEQF2266_AEE67564.1 Maf-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDATLAADPPRLYLASASPRRRELLLQIGLTHTVLRVPAPPGEDEPQHPGEAACDYVRRTARDKAERGQAWLHSQQLPD
LPLLAADTTVILDGIVLGKPADRADALRMLAALSGREHEVHAAVALCHQGRLYEDVSITRVRMRALEQAELQRYCDSGEP
YGKAGAYGIQGLAGAFVSHIAGSYTGVMGLPIYETAALLRSAGIAVP
>SEQF2266_AEE67565.1 autotransporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGQARGWYGAGGRHPIHFQISAGAALMLGLLDVAGAAAVTAAQRIDGGAAFLGDVAIATTKASEHGINVTGRTAEVRVT
GGTIRTSGNQAQGLRVGTENAPDNTALGASVFLQNLIIETSGTGALGVSVHEPQGGGGTRLSMSGTTVRTRGDDSFALQL
SGPASATLNDVALETAGQQAPAVVLWQGAQLNAQGLVVQVNGAGVSAIHAQDAGSFTLSGSDITARGLEVAGIYVQEGMQ
GTLTGTRVTTQGDTAPALQVEDAGTHVSMNGGALSTSGANSPAAWLLAGGSAQFRDTVLRTVGEASHGVDVAAHSEVELA
HAQVRADGQGAHGLVVTRSSAMVRAGSLVESTGDGAAALLESGHLTVDGSVVHGHGAAGLEVDGESNVSLLNGARLSSDQ
PTAIRLIDPRSVLNLDIKDRAQLLGDIAPEAQQPDGSPEQARVRVALADGGTWAGRTDGAVHTVRLLDRGVWTVTGDSRV
AEVKLEGGTLAFAPPAQPKGAFKTLVATQGISGTGTIVMNAHLPSGTADVLVAPQGFGDRQVLVVNNTDDGTESGATKVP
LIEDEQGHTAFTLGNMGGRVDAGARQYELTASEAQADKARTWQLTPTNELSTTATAAVNAMAIAASQRIWQAEMDVLLRH
MSGLHSIGSPGGFWARGLSQRQRLDTGYGPWQKQTVSGIELGLDRRVAGGATTAWSVGMLAGYSETRRDGGAYRAGHVHS
AHVGAYVSYLNDSGSYVDGVVKYNRFRHGFDIRTTDLKRVDAKHRSHGLGALLRGGRRIDIDGGWYVEPQASVAWFHAGG
SRYEASNGLRVRADGAHSWVLRAGAEAGRQMRLANGNIVEPYARLGWAQELGADNAVYTNGIRHVTRSRGGFAEARVGVG
ALLGKRHALYADYEYAKGARFEAPWTLQLGYRYSW
>SEQF2266_AEE67566.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE67567.1 putative ribonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEDILINVTPFETRVALVEQGAVQELHVERSVQRGHVGNIYLGRVVRVLPGMQSAFIDIGLERAAFIHIADLRENRSER
SQGQTPTPIEKLLFEGQTLMVQVIKDPLGTKGARLSTQISIAGRMLVYLPHDPHIGISQKIDSESERTQLRERLQALMPP
EEKGGFIVRTQAEGATDEEIAADLEYLRKLWASVQAAARSQPAPTALHQDLTLGQRVLRDMVGPHTGTILVDSRSTSSAL
QEWARVYTPSVAERIRHYSGERPLFDTANVDEEIARALSRRVDLKSGGYLIVDQTEALTTVDVNTGGFVGGRNFDDTIFK
TNLEAAQAIARQLRLRNLGGIVILDFIDMEDPDHRETVLAELKKALSRDRTRMTVNGFTQLGLIEMTRKRTRDSLAHQLC
EPCPMCQSRGNVRTARTVCYEILREILREARQFNPREFRILAAQGVVDLFLEEESQHLAMLGDFVGKQISLEVESQYSQE
QYDIILI
>SEQF2266_AEE67568.1 putative dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRRPAGAARGSDAIGIARAVAGPAALTATQSPAMAARTAYLGPAGSWTHQACLDLYGADGLVPLSREALFAAYADGKVE
RACVPVATSVVGLTPYMEDVLALPRVVVVAEYPKMLGYSLLARPGTRREDIKEVHAHPVAFEEVRPWLEREMPGARRVPA
ASGGAAAQAVAASATQDKASFGPRVGASVYQLVSLADGIEEGPHNVTRWWVLGRDMPAPTGKDKTSLLACIPDARLAPLL
ADFAQAGVPILTIYERPARKTLDAHRYVVEVAGHVRDDALAGLLARQSELRVLGSYPRRY
>SEQF2266_AEE67569.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRKRSIDRDKVLDAAETIVVRDGAKGLTIDAVAREMGVTKGGIQYCYGSKDAMIEALFERWDKAYETLFQAVLGEDASP
RGRVRAHAEATRRADATSNAKAASLLAALIQAPELLGSTRSWYRSRLDGLDVDTEAGRRARLAVLATEGAFLLRFFGLME
MDESEWQAIFRDIRAVLVDAP
>SEQF2266_AEE67570.1 putative inner membrane efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPQNRWLVLAIIASALFLITVDTTVLYAALPRLTHDLHASAAEKLWIINAYPLVVTGLLPAMGALSDRWGPRATFTSGL
AAFGAASLCVAYAPSATLLIVARGLLAIGAALMMPATLAILRHVFTDARERALAIGVWAAIASGGAALGPVVGGVLLEYF
WWGSVFLINVPVVLALLWPAWRLVPAGQPAAHRPWDLGAAVLIMTALLGLVFGLKELGKPAPGYGVAMLAVAVGAVAMTL
FARRQRGQAEPMIDVGMFRDAGFSRGVAVALIAMLTLVGVELVLSQRLQLVQGMTPLQAALLLLPVPLAAAAAGPLAGLW
LGRAGERRVMGTALALAGVGAAGMVVGTEWPLAGQMAVLALLGAGLGGAMTAASTAVMLHAPADRASMAASIEEVAYELG
SVLGVTLFGSIMTTVYTRTLVLPADAPAAAQLRDSLDQALAAAETMAPQWAQQVLPMAYQAFDHAYAVVAATAAALLAGA
ALLTQARRRGPQSSRNCML
>SEQF2266_AEE67571.1 putative ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAWRPGRPDGCQAAGGRRYNPGHDCIKASVSLNSAARNAPAGSQPVKAELWKRVYSRVGSYWKGLVLAVLLMAGAAATQ
PTLAVIMKPLLDDGFSGAKPHYVWFLPLAVVGLILLRGICNFFSDYLLAWVANNVLRGIRGEMFERLLGLPDADFKRGDT
GRLLNRFTIDAGNVTGYATDVITVLVRETLVVIALIGVLLYMSWALTLIILVMLPVSVGIARAFTRRLRRINRETVNMNA
ELTRVVSEGIDGQRVIKLFDGYDAERRRFDFVNSRLRRFAMRSATADAALTPLTQVCISVAVGAVIAVALSQANSGALTV
GSFASFMAALAQIFDPIKRLTNLAGKMQKMLVAAESVFTLVDQTPEADAGTRALPEPVRGKVEFRAVSHRFPDADRDTVS
AVSFLVEPGQTVALVGRSGSGKTTLVNMLPRFVLPDGGDILFDDVPIQDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYG
AGGTVDDARVRDALAAANLLEFVDGLPLGIHTPVGQNAARLSGGQRQRLAIARALIKNAPVLILDEATSALDNESERQVQ
ASLERLMRGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGPHSELLAANGLYASLYNMQFRED
>SEQF2266_AEE67572.1 heptosyltransferase II [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTISCIYVRLPNWIGDVCMSLPSLRTLQDSGAPLVVCARPWARDLLAGVPKQDFLPMTGKVLRDRATVAAHRRALGGGA
ATRGLLLPDSLSSAAVFRLAGIPCAGYRDDGRSPLLRWPVDKPGASLHAVQSWHYLTRAALQRWGLPAGPVEPGALLDLP
LTQAHRDAAGQLLQAQQLAGRPFVLIAPTATGLHKGKVKVWPGFDALTRALQERGQTVVMCPPPAEVAEARRNAPSATLL
PPLGLGAFAALAQRAALVVCNDSGVSHVAAAVDARQLTLFGVTRPGRTGPWSPRAVCLGSETRWPGPEQVMEKSLELLSG
A
>SEQF2266_AEE67573.1 hypothetical protein BPTD_2282 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAISSFLTNLIIPLNLCLTLVVLGLVLGLFRLRKTGAALIAGGLLWALAWSLPATSLWLGGALESRYPHLPPDQSPTADA
IVVLGGNTANGRANWFLPYDKETAVVRVDTATELFQAGRASKVVLSGGALEGDISEARGMAYRMRQHGVPESALILENAS
RTTYENAALTEDTLRQHGIQKVLLVTSALHMPRAMAAFSKQGVQAIAAPAPPQIVAPADGSLSPWLPDQRSFDASRSIIK
EYAGLFVYWLRGWV
>SEQF2266_AEE67574.1 hypothetical protein BPTD_2283 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSATLSCRPGCGACCIAPSISSPIPGMPQGKPAGSRCVQLDDDMRCRIFGHPDRPDVCSSLQPSTELCADDREQAMTWLL
KLEELTLPAR
>SEQF2266_AEE67575.1 putative transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIALLVDRFGNRFGGAEAYGVELMRILARRHDVTVVAREYDSDLALPFLPVRVSCRLPSWLRVLYFAWRAARLTRAGFD
IVHSHMNGGAGDVQVMHVTPVRYNWLCRPGLRRRLTAWTSPRVATYLALEKARVAQRPGKRVVAVSELIVEQMRDAYGVG
LPMETIPPGVQLPAPSDPARRAATRAALGWGEDDLVCLLVARNPLRKGLPALLAALAHLPARYRLLVVGADGPARQCVGD
SGLADGRVRLVDPTPGVAPYYEAADIYVHPTLNDSYGMAPLEAMSHGLPVVVSSADYCGFAQYLADGRDALILRDPRDGA
EVARAVAAIGDGAPLRAALSAAGLALARAQSWEAVAARYETLYETLLRERAVG
>SEQF2266_AEE67576.1 putative polysaccharide deacetylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIPILMYHQIGEPAPRGTPYRGLTVHPASFRRQMTWLRRFGYRGLSMRDLMPYVRGERSGKVFGITFDDGYRNVHRNAM
PVLGELGFTATNYFVAHQLDGGNVWDLEKGIPFSALMNAQEMREWHQAGNEVGSHTLDHVHLPRMAADEARRQICQSKDE
LEQVLGAPVTAFCYPYGDHTDEHRAMAREAGYDNATLTVRGLASAADDPYGLPRVTVSRSTHLLRFLQKTLTGYEDRRRR
G
>SEQF2266_AEE67577.1 putative outer membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRFLQAWVPLLVAGIAPIWIQARLHGDSFSPRVYLLGVTLMLACALLWRRAWTRPAAVLLCTVLAANLGLAQFCYQAYG
QRFNFGFAYSILTTNYDETVQLLTQHWRSAALTLAVLALLLWVVRRAAHELPTRWLALGAAATALVFFGSWLRYELAMRG
AADEYYPSIERTVSRSPMFNMRYFIQASYDQSLLDTAGRHRVTHALTRRDTGIDTYVVVVGESARRANWGLYGYARDTTP
RAAAERDRMTLYTQAAAPAPLTIMAVPLTLSAATVDSYDPRLFGDNVVALAGDAGFRTYWLSNQARLGRYDTSVTAMANM
AHFKTWADAPYDEALLPLLDAALAEPGRKVVFLHINGNHDNYCTRYPETATVYQGGAPYEDCYDNSIRYVDALLGAVMDR
LRERRASLLFYPDHGLERHESVLGTFYHGGVRPSREAFDIPMFIWNSPAAPAPARREYDAPYSTEDNYGLILDWLGVATG
VDDCKHRPAAPACAGRPVRVIDAKRDVYAYADLAPHPDGRRPATPPRVGPRDQALNVR
>SEQF2266_AEE67578.1 putative transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKILYTNFHGRNGGGHVTYVINLARALAPGHALTVAVPGTSRLYRYAREIPGVEVVDMQYTTRLSSWFHDRAALRRLIAE
GGYDIIHCNGSADHKQVMLATLGLRRRPRIVFTKHNDHPLGSLGNRLRATLATDHSIAVSAYVHGLLADSPYSRHPITTV
RHGIDTDYYAPPDAATAAQWRERYFGPDWRGRLLLGSAGGTDYDKGWLDLVAAAGSLPAPLRERVRILVAGDPPNQAKLD
RVREHGMQDQMVFPGLLDDVREALGACDAGYVLSYREALSFACREMMALGRPVLASNAGGLPENITAGRDGWVVPVHDVP
AIAAVLREMLEQPERLAEMGRQARATAEREFGLRDFAQATLAVYQRTLSA
>SEQF2266_AEE67579.1 putative transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLSVIIITKNEAANILACLESVAFADEFIVVDSGSTDNTVELARDFGARVEVTPDWPGFGPQKNRALDLATGDWVLSID
ADERVTPELASEIQAAMAGATADCYEIARLSDFCGRFIRHSGWWPDYVLRLFRRGSARFTDAAVHERVVPAQGQPARLRG
HFLHYPYNNFDALIAKVNRYSSDAAAMMHARGKRATVFSALGHGFWTFVRIYLIRRGFLDGRHGLVLAVTAAAGSFFRYA
KLMFLSEPRK
>SEQF2266_AEE67580.1 hypothetical protein BPTD_2289 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRNAPNVPVLMYHHVTPAGGMIAATPEVFERQIAALARAGYRSLGTAEFAAYLDGAPVPEKSVLITFDDGYLNNWVYAHP
ILQRHGMKAVLFLITGLLGDGPARPCAGQDGPLPPAPDHDESKRLIAAGRADEVMLRWSEVQAMLAAGTFEVHSHTHTHT
RWDKQCGPDVAAKRAHIVQELADSRRALQARLGEVSDHLCWPQGYFDADYVQAARDAGFRHLYTTDALGQNVPGGDPAHI
YRFAVRNRAGGWLNRRIWLARHPWIGPRYHAWKAWKKKLRRRA
>SEQF2266_AEE67581.1 putative transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPLRIVHSEAATSFGGQEGRIFKEMTAMRERGHHMEAICQPQAQLARRLAEASFTVHTLEMDGPRNYLRGVLSLRRLLR
QGRYDVLNTHSRRDTVIAAAAGRLAGTPLIVRTRHLSNRVGSLWSYTGLPHRVTTVSDHVRQHLIERGVPAGHIATVYSP
IVLPPPIEHSTLRGELGLAADDIVVGCVAVMRATKGHRELIDAMRPLMAERANLHLVFVGGGSPMFEQTQAYVAELGLQA
RIHLMGTRNDVPNLLAGFDLFALATRQEASGTVYVEAEACGLPVVGTDVGGVSEMMRDGETGILVPVDDPAALGAALRRL
IDDRALRRRMGEAGRRMVRDEKVFAPERLAERTEAIYRQWLAERGHA
>SEQF2266_AEE67582.1 DNA polymerase III subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEAVTNPPPFVHLRVHSEFSVSDGIVRISDLIKRVAKLGQPAVALTDLSNIFGLIKFYKGARGAGVKPVAGSDVWLTND
DDREKPFRLLLLVRNHQGYLNLCELLTRSFLENQYKGRAEVRREWLQGQEGLIVLSGARGGDVGQALEAGNAVTALSLAR
QWGQLFPGSYYIELQRAGFDGDETYTQAAMRLAAEAGLPVVATHPVQFLDRDEFQAHEARVCIAEGEILANPRRVRRYTQ
DQYLLSSEEMARRFADVPSALANTVEIARRCNLTLVLGKPRLPNFPTPDGVTLDDYLVQLSEEGLEKRLQFLFPDEAERN
AKRDQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPE
RVSMPDFDIDFCQDNRERVIDYVKMKYGREAVSQIATFGTLGAKAVVRDAGRVLDMPYLFCDALSKLIPFNPADPWTLER
TLKDEPAFKDRYEQEEEVRALVDLARPLEGLTRSIGMHAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLV
KFDFLGLRNLTILDWAVRFVRQFNADKRDFDVMALSLDDQAAYKVLCDANTTAVFQLESRGMKELLKKLRPSTFEDIIAM
LALYRPGPLESGMVDDFVNRKHGRAAVDYFHPDLEGTLRSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEE
MAKHRELFEQGAREKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALIAYQTAWLKAYHPTEFLAATLSSDMDDTDKVQI
FVRDAQDNGVEVLPPDVNASGYRFEPVADKHTEQGKPPRTMRYGLGAVKGTGQGAVEEILRARQEGGPFANLFDFCRRVS
KHAVNRRTIEALIKAGAFDTIEPNRAAMLVSVGTAMEAAEQAARSANQSSLFGDDSGDVVAGELTKVAPWNLHTTLTEEK
TALGYYFSGHLFDAWRDEVRRIVPMQLARLEPQRDLQWMCGVLAGVRTMMTRRGKMVFAVLDDGTAQIEISVFNELYEKH
RGRLREDQLLVVQGKVSNDEYSGGMRIVAEQLYDLQLAREARAKSLRIRLNGQADAARLRQLLNPFRAEPENGVPGVPVD
VVYRRNNFLCTVRLGEDWRVRMADTLLENLNDWAKPDGVEVTY
>SEQF2266_AEE67583.1 putative dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPQRRPLRTMKWLIPGLWLASILFAHFRGRVRLSLSRQMLDHSVLLAPVNAFMVLTSRVPTTPYLTTSEIPELKVLDDNW
ETIRDEALKMAELRRIKAAERHDDIGFNSFFKYGWKRFYLKWYDARHPSAEELCPKTVAILKSLPKVKAAMFAELPPGGK
LNPHRDPFSGSLRYHLGLATPNDDRCYIAVDGESYSWRDGESVVFDETYVHEAHNKSEGNRIILFCDVERPLKWRWAEAF
NRWFGRVVMSAASSPNDAGDQTGAINKLTHAHWVIDQKRKQFKAWNRTVYKATKWGLIALVAIGFLAL
>SEQF2266_AEE67584.1 putative ATP-dependent helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPEASRPPERAAAARSEPRPERPIPAISYPEDLPVSARRQEIARAIAAHQVVIVSGETGSGKTTQLPKICLELGRGRRKM
IGHTQPRRLAATSVAKRIAEELRTPMGEVVGYQVRFNDRTGPNASIKLMTDGILLAESQRDPLLRRYDTIIIDETHERSL
NIDFLLGYLKQLLPRRPDLKVIITSATIDAERFARHFAAGPERPAPVIEVSGRLYPVEVRYRPVQPPMSDEAAAAPAKGG
RERSAGDEERDLIDAIVDAVDECARHGPGDVLVFLPGEREIRESAEALRKRHPVGTEVLPLYARLSQAEQEQIFHPRGNA
RRVVLATNVAETSLTVPGIRFVVDSGLARVKRYSWRNKVEQLRIEPVSRASANQRAGRCGRIGPGLCIRLYDETDFNARA
PFTDPEVLRSSLASVILRMKSLKLDDIEQFPFVEAPPGRAVADGYHLLQELGAIELAGDGEAAEAGGGGAAFRLTRTGQE
LAKLPVDPRIGRMILAAREQQCLAEMLIIAAALSVQDPRDRPMAEREAAESAHAKFADDKSEFLSFLKLWRWYGEQVQHK
ASQRKLVALLRQNFLSPVRLREWHDVHTQLAALVGEQGWRLNQSEATYEQLHMALLSGLLGNIGFKGEEGGQYHGAREIR
FHIHPGSRLVKKAGRWIVAAELVETTRLYARCVARIEPVWLERAAAHLLRRNWSDPRWEKKAGQVVANERATLYGLLVYN
GRRVHYGRINPQHARELFIRQTLVPGEIDTRLPFVAHNRKLIAGIEKLEHQTRRPDILVDDELIYAFYDRQLPADISQAA
SLEKWVNGLDKAAAARLLLTRDELMRHEAAGVTTDVFPKKVEWQGVAMPLDYHFEPGSPRDGVTLSVPLFALNQLDAQRC
EWLVPGMLKEKAHLLLKSLPQKLRRHCVPLPDYAAGFYERWYERQADPQQGLVDALIADMWDQVQVRPAPGDFKLETLPA
HLFMNFKVVDEHGRMLAAGRNLAQLKAELGKQAQATFQQLAARDSDVAQALAHENLTSWSFGPLPEIMEIKRGGQSVIGY
PALVDRGAHCDLDVFDDPDEARRHHRAGLLRLFRLALREQVKFLEKNLADLTKMSMLYMALGTQEELRDQIIDCALAQAC
LAEPWPVNEQQFEARRQEGKGRLGLLAQEVARMAHAILAEYGALQRKLPQARPHAAAYADLQQQLGVLMPKWFVRDTPYA
QLAHYPRYLKAAVARIDKLRADPARDARLMGEMAPILTQYQRARSALKGAPDPRLDEFRWLLEELRVALFAQELRTPMPV
SVKRLMKAWESLRR
>SEQF2266_AEE67585.1 N-acetylglutamate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQDRCPHQDHRSIPTIMPDLEPDTVSALEAPEFAPAQFVRWFREVAPYVHAFRGKTFVVAFGGELVQAGALNILVQDLSL
LSALGIHLVLVHGSRPQVNEQLRLKGYTQQFGRGLAPTDPAALECAKEAAGEIRLDIEAAFSQGLPNTPMSHSHIRVLSG
NFVTARPTGVVDGIDYKHTGQVRKIDVDALKFAIEQGSVVLLSPLGFSPTGDAFNLAMEDLATSVAVALRAEKLIFLSGE
PGVLDGNGAVDTELARVDADALLARGKLDEDTTYFLQHASLAVKRGVARAHLVPYALDGSVLLEIFTHDGVGTMVVEDTL
DDLRAATLDDVGAILSLIEPLEADGTLVPRPRSAIERDVERFTVLEHDGVIYGCAALYPFPEDQMAEMACLIVHPEWQGS
GEGEILLRHMESRARASGARRLFVLTTRTSHWFMKRGFVRGGVADLPRDKQNNYNRSRNSLVFIKKL
>SEQF2266_AEE67586.1 hypothetical protein BPTD_2295 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRIVNCVKLKREAEGLDFPPYPGELGTRIWQQISKEAWEEWKQIQTRLVNENRLNLADARARKYLQQQMERFLFEDGTV
EAQGYVPPSA
>SEQF2266_AEE67587.1 putative phospholipase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAATDPDIAALVARAAAVAPERRSGTLRDLDHIVILMQENRGFDHYYGALPGARGRADPHRAPTPDGDVFVQAHAGQRL
APYPLAPALPPGQPLGHLTPHTWDDAQRAWNDGRMDQWLAAKGRLGMGYYRPEELPLQTALARAFTLCEAYHCSMHAGTN
PNRLFLWTGTNDPHGQAGGPALVNTHDRPGPAHEGYAWTTYPERLQAAGVDWAIYQDMADNYHDNPLAGFRQYRAELAGG
AARAPLRERALSTRTLAALAEDAANGRLPQVAWIIAPAADSEHPEVSSPAQGAAFSARVLDILTRAPALWRRCALLLTYD
ENDCFFDHMPPPAPPGAAGGGSTADTAGEYHQARGGPSAGTPDDPRALHGRAYGLGPRVPMLVVSPFSRGGWLDARVYDH
TSVIRLLESRFGVAEPNISPWRRAVCGDLSHAFDFTGAQDQAGAPGPRSRPSPYACHVEAWAADGRQRVRMANPGHATLV
LHVYDCLRLAQGPRRYTIEPGRQWEDSWPDAGADLACDLWILGPDGFHRHIRRHGAAAPLAAAWRDQPPALLLENRGAQA
LQARIESAYGEAPALLRLAPGEQAAWPYEPASRGWYDLTASAAGQSLRLAGRMRAAGPGRPDPRLG
>SEQF2266_AEE67588.1 putative transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPTTQGVRMTEHTNKQFDADLQHVRSQFLQMGGIVEAMIHEAVEAIPAGDMSMVEKVREREKEVNRHEVEIDERISLIL
ARHQPTAIDLRTLLAVSKMLTDMERSGDEAEKIATAVRRMYENDQRHIPLIELRHMAVNVGNMLRQALDAFARLDPILAA
QVVRSDKEVDKEWKAALRNLITYMMEDPRTISRAIDMIFIARALERIGDHAKNMAERVIYMVKGADVRHTGVKNTERLAR
GEEAIEKADKAEKAGNAETPAPTPEVPQ
>SEQF2266_AEE67589.1 ribose-5-phosphate isomerase A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTQQELKQQAADAALELVEQVAGPDVIIGVGTGSTADLFIDGLACFKGRLRGTVASSERSAARLAGHGLAVLDLNDVQS
MPIYVDGADEIDPNLHMIKGGGGALTREKIVASVARRYICIADESKLVERLGRFPLPVEVIPMARNAVARGLSRLGGQPA
LREGFVTDNGNIILDVAGLSIADAPGLEKTINDIPGVVTCGLFALAGADVALLATQDGIRRLERRG
>SEQF2266_AEE67590.1 putative acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPFLTHQVTNQVAPLEDYSLYETDPVLQQAVRREGAAAFESELREHGAWLGRAQTLEAAAEANRNSPRLLAYDPTGHRQ
DKVAFHPAWNALMTGIVARGLHSRAWAQPVPGAHVARAAAYLMQGQVEAGTLCSTTMTHAAVPLLAREPAGVIDYGRDWL
DVLYSREFDASDAPIGRKRGALIGMGLTEKQGGSDLRSVATRAEPVGAPGRGQAYLLTGHKWFLSVPHADAHLVLARTDE
GLGCFFVPRWVPDGPRNAVRLRRLKDKLGNRSNASAEVEFEQAWGAMLGEPGRGTAVLLEMAATTRLDCVLGSAALLRQA
VAQALHHAAQRQAFGTALLAQPLMRVLLADLALENEAATVLALRLARAVDERADPVARALVRVGTPAAKLWVCKRAIAAL
GECMEVLGGNGYVEEAPLARLYREAPVNSIWEDSGNVMALDVLRGLAREAEALPGLRDELDRARGVVPAYDQALDDWLAL
VAQPDSVPQALARRVAAGLATLWQAALLIRHAPTPVGAAFAATRLHAPAGIVGAAPIDDPAPILARAWPGIC
>SEQF2266_AEE67591.1 lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEIGLESYLPWITVAAAVFALLACLLALRGRGGDARLQALLDGLERVDRGLRADLAESQRGLRAELAESMRALRAEMAQS
QEELRATLGRDARAARAEHGESLARFASQFGERLQGLVELNDRRMQDVRQVVDQRLQALQADNGARLEEMRRTVDEKLHA
TLEQRLGESFRMVSDRLEAVHKGLGEMQTLAAGVGDLKRVLTNVKSRGTWGEVQLARLMEDAMTPEQYARNVKPVPGSDA
VVEFAIRLPGKDEGGGPVWLPIDAKFPKEEYERLMDAQDAAEQEAARAAGAALAKAVETQARLIASKYVAPPHTTDFAIM
FLPTEGLYAEVLRRPGLLDKLHGLRVNVAGPANLAALLNSLQMGFRTLAIERRSSEVWQVLRAVKTEFAKFGESLATVKK
TLDTASNRIGQTEVRTRAMLRNLRTVEALPEAEAARLLGDEPDTLGADQGSPS
>SEQF2266_AEE67592.1 hypothetical protein BPTD_2301 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGSGYAAMFGPLDLSQARLLAQGGDRYVFQHPHEPALLVKVMDMEARAVYLEARPFKRWYKQFQRESAYRVYLNEITEY
VTTSTSASGVWQVPLARIVGLAQTSLGLGLLAEKITDAAGNMAPTVSDLVKRGEFDTALAQRLDRFFEDLADAHIVIHDI
SASNIACGRNAEGREGLYLIDGFGVLPLIPTYAWSRRLNRKRIMRKYAELRARMPAPAP
>SEQF2266_AEE67593.1 3-methyladenine DNA glycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAPARTARPQPGPALPAAFFNRDAQQLARDLLGKVVRHRVDGLWLSARIIETEAYYLAEKGSHASLGYTHKRRALFMDG
GVVYMYYARGGDSLNFSAAGPGNAVLIKSGHPWVDEVSGPRALACMQRLNPDAQGQPRPPARLCAGQTLLCRALGLKVPQ
WDAKAFDPRRFFVEDVGVRLDRLVRTTRLGIPAGRDEHLPYRYVDPAYAAFCTRNPLRHGQQAGRDFDWVDPDGALYV
>SEQF2266_AEE67594.1 hypothetical protein BPTD_2303 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQVTLYGLNKCSTCVKARDWLAARGVAHDFVDYRDHPVPAATLKQWAGKVGGWEKLVNRTSMTWRALSDERKAARSDAE
WTALIAEYPALVRRPVTVTPDGEVTVGFSEKRYGERFA
>SEQF2266_AEE67595.1 putative inner membrane permease polyamine transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKGPNKSLRMLVLGLGYFFLYVPIISLMVFSFNDSPVVTSWTGFSLRWYGSLLEDSALLRAAWLSFKIAVLTATAATIIG
TWAGYVLGRMGRFRGFTLYVGMLSAPLVIPEVVLGISLLLMFVEMRGHLGWPEQNGVFTIWVGHVTLCMAFVAVVVQSRI
RDMDRSLEEAALDLGATPIKVFFAITLPLIAPALVSAWLLAFTLSLDDVVIASFLSGPGSSTLPMEVFSRVRLGLKPEIN
ALATLFILAVGTCVIIANRLQWRKEADNR
>SEQF2266_AEE67596.1 putative inner membrane permease polyamine transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRFALPRPSRRTVAIVPPFAWLVLFLLVPFLLVFKISFAELQFGIPPYTPLAEFKDEAVQLSLHLRGYVLLFTDSLYVA
TYLNSVKMAAITTLCCILIGYPIAYYIARSAPALRNLLLLAVILPFWTSLLLRVYAWVGILRNDGLLNKLLMSLGLISSP
LEIYRTDLAVYIGLVYAYLPFFILPLYANLVKMDLRLLEAAYDLGARPWQAFWRITVPLSRPGVIAGAMLVFIPSVGEYV
IPEMLGGADTLMMGRVMWNEFFNNTDWPMASAVTCVMVLLLLVPLALFQYNQIKQQDFAGGGRR
>SEQF2266_AEE67597.1 putative polyamine transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDIRYSAQHSADPDEFVKVSDVVKIFGDVVAVQSVNLSVRRNEIFALLGSSGSGKSTLLRMLAGFEDATSGQILLDGED
ITNVPPYRRPVNMMFQSYALFPHMTVEANVAFGLKQEGVDRAEIHDRVFEALDLVQMAGYARRKPHQLSGGQQQRVALAR
SLVKRPKLLLLDEPMSALDKQIRQKTQIELVKILQQVGVTCIMVTHDQEEAMTMAHRLAVMTEGQIVQCGTPQDVYEFPN
SRFVAGFIGSTNLFSGTIVVDEPDHVAIESGELTRPLYVSHGVSEPLGMEVHVSIRPERLVVLREQPEAEHNWAHGMVTH
MAWMGSYGLYQIRLDSGKIVEASVPSLQLARQDAPGIDEEVFVSWDADSATVFSS
>SEQF2266_AEE67598.1 putative polyamine transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFSARLRCVLGGAVLAVAMSPAVAQDKVVNVYNWAEYTAPDTIPGFEKETGIKVRYDVYDNNDTLQAKLLTGKSGYDVV
VPSTHYASRQIEGGLYQKLDKSKIPNWKNLDPDVMALVATIDPGNQYVIPWGYGTNGLGYNVTKVRQIMGEGVDLANWDM
LFKPENAAKLKECGISMLDEAAQVFPAVLKYLGKDPNSANTDDYKEALALLKQIRPYIRQFSSSGYIDELAVGDLCMVYG
FSGDVMIARRRAQEARKPYEINYFIPKGGAPAWFDVMAIPKDAPHPEEAHAFINYIETPQVHAAITNTMFYPNANKAARE
FVVKDVADNPMIYPPADMSKTLYVIKAQPLNVQRLQTRMWAELKSGR
>SEQF2266_AEE67599.1 3-deoxy-D-manno-octulosonic-acid kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPADTRARTERLAWREAPAGAMLYDAARIEAPGPALFDPSSYGAAAQPVAAGGRQAAWFVATPGWQGVLRGYRCGGLAAR
VSRDAYVWQGEARTRGLREYRLLAHMREQGLAVPAPLAAGYWRYGLTYRAAILVERIPAARPLASLLDEPAWEAVARAIA
AMHRAGVWHADLNAFNILLDPGGLAWLIDFDRGTAGGVSERGRQGNLARLRRSLVKVGGERGQDFWQRLEPAYRAAWARG
TARA
>SEQF2266_AEE67600.1 globin-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTTRVQPISEPLDTSKTVFDMLGGEPGVRELVDRFYDLMDMESDFKALRDAHGPSLEQARDKLFWFLCGYFGGPDHYIE
RFGHPRLRARHLPFSIGEIERDQWVACMGRAMQDQQLPAALVDRLLQAFYGTADWMRNRAG
>SEQF2266_AEE67601.1 putative inner membrane transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMDFPDARSPARQGWLPTLRLGLRMMMRDARAGELRLLVLVLVLALVVAVAAVTSVGFLADRVGRALERDAGQMLGADLV
LEADEPVPAEFAQRARQAGLSVSSTLQFPSMASANGNAQLASLKAVEPGYPLRGSLRVAEAPFAQDAPTRDVPALGAVWV
DAQLLTLLGVQVGDTLGLGDARLRIERVITYEPDRGMQFVNVAPRVMLRTADLPATGLVAPGSRIGYALLAAGQPDAVAA
YGQWLGQHLQRGQKLATLESGRPEVRRTLDRAQRFLALVALLAVLISAVAVALAAGRFMQRHRDGIAVMRCLGAVQAQVT
RMLVLEFALVGLAASAVGCLLGYAVHQGLVLALGQLIDTSLPAPSAIPAAQGVLTGLLMLLGFALPSLAQLRHVPPARVL
RRDADRLRARGAGGYALGAVGLGLLIWWFAGDARLGAVVAGGFLGAFAVFALVAWLAVQALARLRRAAAGLPALRFALAG
VVRRRAATITQVCALAIGLMALLLLTMTRTDLIAGWQRTLPPDAPNRFLINVQPDQRDAVMQRLADAGLGQVHLWPMVRG
RLVSVNGRPVGPDDFDEPRAKRLVDREFNLSYGDTLPESNRVEQGRWLRPDAAEVSLESGLARSLKLAVGDKLGFDIAGQ
QVEVVVSGTRRVDWDSMRVNFFAILSPQALADAPQSWITSFHLPPAKAAVLRDLVQAFPNLTVFDVGAILGQLQTVLDEV
VKAVQLLFLFTLAAGVLVLAAALTATRDERVREAAVLRALGATRRQLARAQRLELLAVGGLAGLLAAGGATAVAWVLSTQ
VFDFAISLQWWPWLAGALAGMLGAWAGGALALRGVLRTPPLVTLREA
>SEQF2266_AEE67602.1 putative periplasmic substrate-binding transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKSWLAAATLAACTVAASLPAAAQTTLKMAYALSTSSHYGAGAEAFAKSIEGASGGKYKVQQFANSALGGEREVIEGLQ
IGTIDLAIVSTGATLNFVPETGVFDIPFLLRDLPHARAVLDSKIGQDMLAKFPDRGIIALAWGEQGFRHLTNNVRPVKTP
ADAKGLKIRTTENPIHITAFRQIGILPTPMAWPEVATALQQGIIDGQENPLSVITSAKLSQLQKYLSLTGHVYGPALVLM
SANVYNGLSDAEKASFKAAGKDSAQAMRAYVDNIEQTGVEQLKKEGMEVSEVDRAAFAAAVEPAYAEYYKKFDKQLIQSI
RDTK
>SEQF2266_AEE67603.1 putative inner membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLLCTAERALFRLVSAIAQILLIAAACAAFYQVIARFILHSPADWSEVATRAQLIWTVLLGVALAFRHGAMISVELLRN
TLQGAARRLLEHAIALTCIAFLAFIAWIGGQMTWRVRFQNVPSLDISISWIYLAIPVGATLTVIAVLARWLAGEQDDVPV
RNDAQG
>SEQF2266_AEE67604.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQLMILSMLIFFGLSVPVAVAIGIAALTGVSVGGLPWLVVAQQIYAALDKYPLVAIPFFILAGNLMEAGGISERMVEFA
KSLVGGIQGGLACTCVLTCMIFAAVAGSSVATTFAVGAILIPAMVRHGYPAPFAASLQASAAELGVIIPPSIPMILFAVS
TDTSTGELFIAGVMPGVLIGLALMLYVWLYARRNGLGKQDGAGRLPVWQAFKRAWLALLMPVIILGGIYGGVFTPTEASV
VAVMYAVLIGWLVYRRLSFGLISTTLHRSVISTAVIMFVIANAGVFSFLLNRAGIPDALGVWLSQLFDNHFTFLMGVNAA
LFVIGMFIETSASVVVLAPLLLPVAMKFGVEPVHFGVIMVVNLALGMITPPFGVNLFAACAVAKLPLERLVRPLVPFVGV
VVACLLVITYWPGLSLGLRDLVYGR
>SEQF2266_AEE67605.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE67606.1 type II citrate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLSDKKATLSFSDGSAPIEFPVYKGTVGPDVIDIRKLYGQTGMFTFDPGFMSTAACASGITYIDGDKGELLYRGYPIEQ
LAVNCDFLDICYLILNGELPNGGQKQDFDSQVTHHTMVNEQLHFFLRGFRRDAHPMAVLTGLVGALSAFYHDSTDITNPH
HRHVSAIRLIAKMPTLVAMAYKYSQGQPFIYPQNDLSYTGNFLRMMFATPCEEYKVNDVVERALDRIFILHADHEQNAST
STVRLCGSSGTNPFAAIAAGVACLWGPAHGGANEACLQMLEELQANGGVAKVGEFMEKVKDKNSGVRLMGFGHRVYKNYD
PRAKLMQETCKEVLVALGLENDPLFKLAMELERIALEDDYFVQRKLYPNVDFYSGIVQRAIGIPTSLFTAIFALARTVGW
IAQWNEMLSDPDYKIGRPRQLFTGSVTRDVPGMDKR
>SEQF2266_AEE67607.1 hypothetical protein BPTD_2317 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRLTELQRARLRWRARRGLLENDLIITRYLDACEDQLTDEDVTALTQLFELGDNDLLDLLLARKEPEGALDTPRLRAII
DRMREL
>SEQF2266_AEE67608.1 succinate dehydrogenase iron-sulfur subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTKRIVKFEIYRYDPDKDERPYMQKLEVELQPTDKMLLDALVRIKNDVDDSLALRRSCREGVCGSDAMNINGKNGLACT
TNLLELKEPIVLKPLPGLPVIRDLIVDMTHFFNQYHSIRPYLINDTPPPEKERLQSPEAREELDGLYECILCACCSTSCP
SFWWNPDKFVGPAGLLQAYRFIADSRDEATGARLDNLEDPYRLFRCHTIMNCVDVCPKGLNPTKAIGKIKELMVRRTV
>SEQF2266_AEE67609.1 succinate dehydrogenase flavoprotein subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVAVMNSLPRRQFDVVVVGAGGAGMRCSLQLAQAGLSVAVLSKVFPTRSHTVAAQGGVSASLGNMSEDNWYWHMYDTVKG
SDWLGDQDAIEFMCREAPNAVYELEHFGMPFDRNADGTIYQRPFGGHTANFGEKPVQRACAAADRTGHALLHTLYQRNVA
ARTQFFVEWMALDLLRNEAGDVLGVTALEMETGEIYVLEAKTTVLATGGAGRIWAASTNAFINTGDGLGMAARAGIPLQD
MEFWQFHPTGVAGAGVLITEGVRGEGGILLNKDGERFMERYAPTLKDLAPRDFVSRSMDQEIKEGRGCGPDGSYVVLKLD
HLGADVINKRLPSIREIAIKFGNVDPIKEPIPVVPTIHYQMGGIPANYHGQVLERANGENKIVNGLYAIGECAAVSVHGA
NRLGTNSLLDLIVFGRATGNHIVDSHPERQHAHQPLPKEAVDRSLARVDELESRTSGEKTQDVANAIRMSMQRHCGVFRT
LELLNEGVGQIEDLAQTAQHIYFKDKSKVFNTARVEALELANMTEVARATIKSAANRTESRGAHALNDHPERDDVNWLKH
TLWYSEGSRLDYKPVQMKPLTVESFPPKARTF
>SEQF2266_AEE67610.1 succinate dehydrogenase hydrophobic membrane anchor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADTKNYGPKRLVVGAHYGVTDFIAQRITAVILAVYTLVLIVGLLIMPAFTYENWKALFTFHVFALPVGQILASLAFFAL
AWHAWIGVRDIWMDYVRPVGVRLLLQVLTILWLVGSVVYFAQILWRI
>SEQF2266_AEE67611.1 succinate dehydrogenase cytochrome B subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDSAAKPRPQFRNISVPQILSYRLPLAGKLSILHRISGALLFLCLPLVIVPLFAASVTSPESYAQVAQYAANPLVKLVL
LALIWGYLHHFCAGIRYLVLDLHIGLDKVSAQKSAGVAFGVSLALTLVFGLKLFGVL
>SEQF2266_AEE67612.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAGRIPNTHDSDMAEARPDSLTRSRAAKPAGEGAAFSPLYRQIKELLVQSLDRGEWKPGELIPSEIDLAARFQVSQGTV
RKAVDELAAEHLLLRRQGKGTFVATHHEARVRYRFLRLAPDEEGEGGRAESRILECRRLRAPAEIARALELRAGETVVTI
RRQLSMNHMPTVIDDLWLPGTHFRGLTLELLTASKAPLYGLFESEFGVSMVRADEKLRAVAASPEIAPLLGVEPGRPLLQ
VDRISYTYGDRPMEVRRGLYLTDHYHYRNSLN
>SEQF2266_AEE67613.1 malate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKPALRVAVTGAAGQIGYALLFRIASGEMLGKDQPVILQLLEIPDEKAQKALKGVIMELEDCAFPLLHEVTAHSDPRTA
FKDADVALLVGARPRGPGMERKDLLSVNAQIFTAQGRALNDVASRNVKVLVVGNPANTNAYIAMKSAPDLPAKNFTAMLR
LDHNRALSQLSAKSGKRVADIEKLIVWGNHSPTMYPDFRFATVGGQGLTQLINDDAWNRDTFIPTVGKRGAAIIEARGLS
SAASAANAAIDHVRDWVLGSNGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEE
RDGVKDLLK
>SEQF2266_AEE67614.1 methylcitrate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSQKKPTVQQKKPAAQPAEKAAFKPKKSVALSGVVAGNTALCTVGRTGNDLHYRGYDILDFAGSAEFEEIAHLLVHGK
LPNKAELKAYKEKLRALRGLPAQLQNVLECLPASSHPMDVMRTAVSVLGCVLPEKDDHNTPGARDIADRLMANLGSALLY
WYHYSHNGRIIDVQTDDDSIGGHFLHLLHGAKPSDEWVRAMHTSLILYAEHEFNASTFTGRVIAGTGSDMYSSITGAIGA
LRGPKHGGANEVAFEVQKRYETPDEAEADIRQRVENKEVIIGFGHPVYTVSDPRNKVIKDVAKKLSRKAGSTKMFDIAER
LETVMWDIKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTAGWSAHIIEQRIDNKIIRPTANYVGPEDQTYVPISKRA
>SEQF2266_AEE67615.1 aconitate hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTKYRKNLPGTSLDYFDARQAVEDLQAGAWATLPYTSRVLAENLVRRCDPATLSDSLRQLIERRRDMDFPWYPARVVCH
DILGQTALVDLAGLRDAIADAGGDPAQINPVVPTQLIVDHSLAVEYPGFDKDAFEKNRAVEDRRNEDRFHFINWTKLAFR
NVDVIPPGNGIMHQINLEKMSPVVQVRDGMAFPDTCVGTDSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPDIVGV
ELTGRPQAGITCTDIVLALTEFLRREKVVGAYLEFLGEGASALTIGDRATISNMTPEFGATAAMFYIDGQTTDYLTLTGR
EDSQVKLVETYARQAGLWADDLAGAQYERMLRFDLSSVVRNMAGPSNPHKRVATTELAERGIAGPWQETPGQMPDGAVII
AAITSCTNTSNPRNVIAAALLARNANRAGLTRKPWVKSSLAPGSKAVQLYLEEAGLLPDLEKLGFGIVAFACTTCNGMSG
ALDPKIQQEIIERDLYATAVLSGNRNFDGRIHPYAKQAFLASPPLVIAYAIAGTVRFDIEKDALGVDAAGKPVTLKDIWP
SDAEIDAVVTASVKPEQFRKVYEPMFRFAQEQTGKIDPLYAWRPQSTYIRRPPYWEGALAGERTLEGMRPLAVLGDNITT
DHLSPSNAIMADSAAGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLINEMAVVDGQVKQGSLARLEPEGKVMRM
WETIETYMDRKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIHRTNLIGMGVLPLEFQAGVDRKTLGIDGT
ETFDVVGERVPRATLTLVIHRRDGEQVQVPVICRLDTAEEVSIYEAGGVLQRFAQDFLESTQTA
>SEQF2266_AEE67616.1 hypothetical protein BPTD_2327 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFLPQLKVRATYMRGGTSKGVFFRLQDLPPAAQVPGPARDALLLRVIGSPDPYGKQIDGMGCATSSTSKTVILDRSQRP
GHDVDYLFGQVSIDSAFVDWSGNCGNLSAAVGAFAIESGLVDPDRVPRNGTAVVRIWQANIGKTILGHIPIVDGQVQESG
DFELDGVTFPAAEVQLEFLDPADEGEGEGGAMFPTGNVVDTLEVPGIGTLQATLINAGIPTIFVDAQAVGYTGSELQDDI
NGDAKALAMFETLRAHGALRMGLIADVAEAAKRQHTPKVAFVAPPAAYTASSGKQVGAGDIDLRVRALSMGKLHHAMMGT
AAVAIGTAAAVPGTLVNLAAGGGERESVRFGHPSGTLRVGAQARLEDGQWKVTKAVMSRSARVLMEGHIRVPAETL
>SEQF2266_AEE67617.1 2-methylcitrate dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHATIPFNQRPAWDSALADIVDYVLDYEVQGKLAYETARNCLIDTLGCGMEALEYPACRKLLGPVVPGTVVPHGAKVPG
TQFQLDPVQAAFNIGAMIRWLDFNDTWLAAEWGHPSDNLGGILATADWLSRSAVANGRPPLAMRDVLTAMIKAHEIQGCI
ALENSFNKVGLDHVVLVKVASTAVVAHLLGLSREEILNAVSLAWVDGQSLRTYRHAPNTGSRKSWAAGDATSRAVRLALI
ARTGEMGYPSALTAPTWGFYDVLFKGQPFRFQRPYGSYVMENVLFKISFPAEFHAQTAVECAMEIHALLKARGKSADDIR
RITIRTHEACIRIIDKQGPLNNPADRDHCIQYMVAVPILYGRLTAADYEDDIARDPRIDALRARIVCVEDPAFTTDYHDP
TKRSIANALTVEFNDGSRLDEIVCEYPIGHRRRRADGIPLLEAKFRTNLARAFPARQQERILAASLDQEKLEAMPVNEYV
DLYVI
>SEQF2266_AEE67618.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLWVKTFHIVFIAAWFAGLFYLPRIYVNLAQQSDPAIQSCLLGMARRLYRFTTLLAIPAIVLGLWLYVGYRIGTGPGNAW
MHAKLLFVLLIIGYHHACGVMLRKFEQGRNARTHKFYRWFNEIPVVLLLIVVTLVVVKPF
>SEQF2266_AEE67619.1 hypothetical protein BPTD_2330 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTDDKARPRKTLTIKKTAPAAPSADDEAPRRKRIGARARLVAQMERAKEQQHAPRRKAPRQDAAHQDDAPRRRPRAPRE
AEIFPVYAPCPQGIEEALAAEMQALGFEDARAGRAGCAFSTDWAGVQRANLYSRLATRILVQVAQADIGHEDDILDLARS
VPWERWFGPDETLRVDTSAIKSPVKSLQYCNLRAKDGICDRLREVEGARPDIDTVRPDARVHLFLSGTTATLYLDTSGES
LFKRGWRLDKGEAPLRENLAAGMLALAGWDPAEPLLDPFCGSGTILIEAAWIALGVPPGISRPFGFERLRNHDARRWQDL
KADARTRIQTQLETPLFGYDLDPRAIQYAQANAERAWLTADTIRFEVGDARHLAAPADHGWIVTNPPYGERMETEDDSEM
WRDWAACLKRQFAGWQVHVISSDMTLPQRLRLKPLRRVPLHNGALDCRLFGFELVPASYRKPA
>SEQF2266_AEE67620.1 hypothetical protein BPTD_2331 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEPTAMNPNTFRLTDELERQLMLQAMEDQFRPRPMRALAAGLRKLADGIKSVAGKSGSKAAHSAA
>SEQF2266_AEE67621.1 hypothetical protein BPTD_2333 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTARMEATVTEIHPTHWRTLWISDIHLGTAGCKAEFLLDFLDHNDSDTLYLVGDIVDGWQLRKHWHWPRAHNDVVQRILR
KARNGTRVVFVPGNHDEFAREFAGFAFGDIEILDEDVHVTAQGVKLLVLHGDQFDGVIQHSKWLAHLGDSLYQTALWLNH
HFNRLRHRLGLHYWSLSQYLKHKVKNAVAFITDFEEALAGEARRRGLDGVVCGHIHQPALRQVDGILYCNDGDWVESLSA
LGETHEGQLQLLDWAACMAERGNDPAAARPRRSLSLPALPSALRRQGRHP
>SEQF2266_AEE67622.1 putative AMP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPSSDHRAMNDQYEALYQTFRWLVPTQFNIADACCHRWAASSPDARRIAIYYEDEAGNREVWTYARLAEAANQLANGLV
KMGVERGDRVGVVLGQRPETVVAHMAIYSVGAVVLPLSPLFGPEALESRLRDADARVAIVDYASSANLLAISDNCPNLHQ
IIGIGFADERVLPWRSLLARQPNEFKMVATRASDPAILMYTSGTTGAPKGALLPHSVLIGNLPGFVASQDWFPRPGDVFW
SPADWAWTGGMMDALLPTLYFGHPIVGTRGRFTPERAFELMERYQVTNTFLFPTALKMMMKSVPEPRGRYQLALRSIMSA
GESVGETVFEWCEQALGITPNEMFGQTELNYVVGNSNRRWPARPGSMGRPYPGHRVAVIDEAGRPVKPGETGEVALNRFD
IHGFPDPVLFLGYWRNEAATAAKFTDDWCRTGDLASIDADGYLWYAGRADDVFKSAGYRIGPGEIENCLLGHPAVANAAV
VPKPDAERGALVKAYVVLTPEYQGRDPDSITQVLQEHVRDRLAPYEYPKEIEYVDALPMTTTGKIQRAVLRRREAERASG
AHS
>SEQF2266_AEE67623.1 putative transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIYQLDDLIPAIDPSAYLADSADIIGNVTLEAGVSIWSQVSIRGDNAPILVRSGTNIQEASVLHVDAGCPMTVGPNVTI
GHQAMLHGCTIHEGALVGMQAIVLNNAVIGRNCLIGAGAIIPEGRIIPDNSLVIGIGKIVRELSAEEIAEMQANNRHYVE
RGQHYKTALKRIG
>SEQF2266_AEE67624.1 putative chaperonin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDLLKKYLFEDRSVRIQAVRLHETWLQAQVNHQHPPAVTRLLGELVAASTLLAANIKFDGSLVLQIQGDGPLALLVVEC
RSDLSLRATVKVREGQSIPDNGTMQSLLNANGNGRFMVVLDPQRKVPGQQAYQGIVPLEGETVAEALGHYMKASEQLDTQ
LWLAADEQHAAGLLVQRLPDHGGTTQGDAAESWSRATHLAATLQPAELLATDTDTLIHRLYWEEPLMAFEPHAVRWFCPC
TRERVSSMLRSLGQAEVESILAEQGRVEVSCDFCGKPYEFDKVDCAGLFAPNSPMPEQDPPTVH
>SEQF2266_AEE67625.1 putative periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEHAAAVPPPRHAGTAALEFMLAGMLLLAASIATVETMYWHQMRHLAYLALIEAARAGATSHGEPGAIARAFARAMRARH
AAGQPGQAATRQQHAWNRQQARTGLPAWRIAILQPGPTAFANHGVANRGLRRPPRIRNDYQAEQHAQRLAQGWPGGAGPR
SGLDIFQANTLRLRLVYRLAPLSPWLGALLRASAALAQACARPAWRQGLLPIRLELEMDMQSDPALWPARPDVSYGDARD
CDGLTAAASG
>SEQF2266_AEE67626.1 hypothetical protein BPTD_2338 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRFPMLCLALCLATGTAAAGEGPPQPSVTPLMTQPLQDYPGKEVAVIVVDYPPGGADPVHRHNAHGFVYVLQGSIVMGV
RGGQPVTLGPGQTFHEGPDDVHTIGRNASAAEPARFLVFLLKNRGEAILTPQR
>SEQF2266_AEE67627.1 hypothetical protein BPTD_2339 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQRLDYQQQSPELFKKFVAFSLALKQSSIETSIRDLVDIRASQINGCTFCLDMHVKEATMHGERPLRLHHIAAWRESTL
FSPRERAALAWTEVLTRIPAEGISDEIHAQVREQLSEQELSDLTFLVMSINAWNRVNVAFRIEPGKYDQAFGVDKSGLS
>SEQF2266_AEE67628.1 hypothetical protein BPTD_2340 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIVVIGGTGLIGSNVVNRLRRDGHETVAASPGTGVNTITGEGLAQALDGAQVVVDVANSPSFEDQAVMAFFETSGRTLL
AAEAAAGVTHHLALSVVGTDRLADSGYFRAKVAQEALIKASKVPYTILRATQFFEFIESIVNAGADGDTVRLSPALIQPI
AADDVSAALADLAVGMPLNGTVEVAGPDRLPLDELARKFLAARGDRRQVVADVHARYFGSELDDRSLVAGDNPRVGSTRL
MNWLSRSPAPQ
>SEQF2266_AEE67629.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLAFDDCLLDLDRRELTRASRAVATAPQVFDLLAYLLANRERVVDRDELIQAVWNGRIVSESTLASHINAVRTAVGDSG
QRQAVVRTVPRKGFRFVAEVRTDAPAPAGMARTPAPPATAPALPAKPSIAVLPFVNLSADPEQDYLADGVVEDIIAALSQ
YRWLFVVARNSSFTYKGRAVNVRQVGRELGVRYVLEGSWRKERNRVRITGQLIDAASGAHHWADRYEGVLDDIFALQDQI
TENVVGAIAPQLERAEIERARRKPTDSLDAYDYYLRGMACAHQGTRQAAEQALPLFHRAIACDPEFAPAYAMAAWCHCWR
KVNGWMQDKPREMAEGARLARRAVELDRIDAVALTRSGHALGHLAGDLQGGIALLDRALVLNPNLAAAWFLSAFLRLWHG
ETAQAVTHFTHAMRLSPLDPELYRMQAGMGVAHLFLGHHDAATAWAEQALRELPSFLMTVAIAAAGHALAGHGAQARRAM
DQLRRLDPALRLAGLSEWLPIRKGENLAILAQGLRLAGLPE
>SEQF2266_AEE67630.1 cell division protein FtsB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLLFLVLLVLLGLIQYPLWLGKGGWFKVWDLQRQVAEQRETNDGLRARNTALEAEVRDLATGVGAVEERARSELGMMRE
GEVFVHILPPGTPLPSDNSTPQASALSKPRPPATPPRR
>SEQF2266_AEE67631.1 phosphopyruvate hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAIVDIIGREILDSRGNPTVECDVLLESGAMGRASVPSGASTGSREAIELRDGDKGRYLGKGVLRAVENLNTEISEALM
GLDAQEQTFVDRTLIELDGTDSKERLGANAMLAASMAVARAAADESGLSLYRYFGGSGPMSMPVPMMNVINGGAHANNTL
DLQELMILPVGAASFREALRWGAEVFHMLKKLIHDQGMSTAVGDEGGFAPNVASHEAAIQLILKAITEAGYEPGTQIALG
LDCASSEFYRDGKYTLAGEGGVSLSSQEFANLLATWCDKYPIISIEDGMAENDWDGWKLLTDQLGKKVQLVGDDLFVTNT
RILREGIQKGVANSILIKINQIGTLTETFAAIEMAKRAGYTAVVSHRSGETEDSTIADIAVATNAMQIKTGSLSRSDRMA
KYNQLLRIEEELAEVASYPGLEAFYNLR
>SEQF2266_AEE67632.1 hypothetical protein BPTD_2344 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAYLIADVSVTKPAQYEDYKRLSTLAMRAYDAKVLVRGGESRHLEGREPGRTVIMEFPSVDKAQAFYDSYQYRRARNAR
EGAAIMNMFIVQGM
>SEQF2266_AEE67633.1 2-dehydro-3-deoxyphosphooctonate aldolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKACGFDIGLDHPFFLIAGPCVIESRELAFETAGRLKEITGKLGVPFIYKSSFDKANRSSGKSFRGPGMDEGLKILADV
RAQLDVPVLTDVHDIDQVAPVAAVVDMLQTPAFLCRQTDFIRACAATLKPVNIKKGQFLAPHDMLQVARKARDAALEAGG
DGNNILVCERGASFGYNNLVSDMRSLAIMRETDCPVVFDATHSVQLPGGQGASSGGQREFVPVLARAAVAVGVAGLFMET
HPNPACAMSDGPNAVPLDRMAELLESLVALDRVTKRSGFLENQFV
>SEQF2266_AEE67634.1 CTP synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKYVFVTGGVVSSLGKGIAAASLAAILESRGLQVTLLKLDPYINVDPGTMSPFQHGEVFVTEDGAETDLDLGHYERFIS
ARMRKVNNFTTGQIYESVLRKERRGDYLGKTVQVIPHITNEIQDFVARGAEAAWNGATDVAIVEIGGTVGDIESLPFLEA
ARQMSLRMGRNNAAFVHLTLVPYIASAGELKTKPTQHSVQKLREIGIYPNVLLCRADRRIPDDERAKISMFSNVPLDAVI
SVWDVDSIYKIPAMLHKQGVDNIVCEALGLTPPPADLSMWDNLVDALEHPQDSVTIGMVGKYVDLTESYKSLSEALVHAG
IHTRSKVNIEYIDSEDIETRGTDQLKHLDAILVPGGFGKRGTEGKIAAIRYARENGVPYLGICLGMQLAVIEFARHVAGL
GGANSTEFDPAAPHPVVALITEWMDREGRVERRDNSSDLGGTMRKGAQRCPIRPGTRAQSIYGDDVNERHRHRYEVNNVY
VPRLEDAGMVISARTPTENLPEMMELPSHPWFVGVQFHPEFTSTPRDGHPLFSSYIRAALEHKAQRAKEA
>SEQF2266_AEE67635.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67636.1 putative aminopeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVTDNRIGALRRAMRQHQLDAYIVPSADPHLSEYLPGRWQGRRWLSGFTGSVGTLVVTRDFAGLWVDSRYWVQAENQLA
GTGVTLMKIAQASTPGHVDWLAARLPAGSRVGVDGQVLGLAAFRALSAALAPAGIHLDILSDLLQAIWPDRPGLPSAPVY
ELPAPHACEPRADKLARVRAAMRAQGADAHWLSTLDDIAWLFNLRGSDVEYNPVFLAHALVGPDHATLFVADGKIDAALR
QALAADGVETADYGLAAEALGSLHTDQTLLIDPARVTCGVFHAMDPAVPRIEAINPSTLYKSRKSDAELASVRAAMEQDG
AALCEFFAWFEGAVGREPVSELTIDERITAARSRRPGYVCPSFATIAGFNANGAMPHYRATPQAHAAIEGDGLLLIDSGG
QYLGGTTDITRVVAVGAPSADQKVDFTLVLKGMIALSRASFPRGTPSPMLDAIARAPIWAGGAEYGHGTGHGVGYLLNVH
EGPQVISYRAAPGPHTAMEPGMITSNEPGIYRPGRWGVRIENLVANRTWLEGELGEFLCFETLTLCPIDTRCIDATLLRA
DEIAWLDDYHRTVRERLAPWVEGAALQWLQARTRPLGAD
>SEQF2266_AEE67637.1 D-aminopeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAPRRSGRPRGGPVISRAVATRTNAMEQLDLPRIGMLPAGELDSIGDVPGVTVGHFTLAQGARQTGVTVVRPHEGDPFR
NKVPAAATVLNGFGKSCGLIQVEELGVLETPIALTNTFAVGAVANAQIRQAIAANPEIGRAWPTVNPLVFECNDGYLNDI
QAQAVAEAHYEQAWRGAASVFEQGSVGAGRGMSSFGFKGGIGSASRLAEAYPGQRYTVGALVLSNFGQRSSMTIAGRPFG
RRLAAAARDGEPAGQPEKGSIILLLATDAPLDSRQLRRLSLRAGAGLARTGSVFGHGSGDIALAFSTAYTIPHLAERGMP
VQVMLHETRIDALFEAAAEAVEQAIVAALWRAETVAGRDGHVRRAIREAAPQWRQWLAETAF
>SEQF2266_AEE67638.1 putative binding-protein-dependent transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHTNTAAVAAQAAKEDVRTPASEFWRKFKKQKLAVGAGLFVLLLALIAILAPWIVPFDPENFFDYDALNAGPSATHWLG
VDSLGRDIFSRIVMGARISLAAGFLSVAMGAVVGTFMGLMAGYYQGWWERITMRISDVLLAFPGMLLAIGVVAILGSSMV
NVIVAVAVFSVPAFARLVRGNTLAIKQMTYVEAVRSVGASDWTIIMRHILPGTISPIVVYGTMRIATSIITAASLSFLGM
GAQPPTPEWGAMLSEARADMVIAPHVAIFPALAIFFTVLAFNLLGDGLRDALDPRIDRK
>SEQF2266_AEE67639.1 putative binding-protein-dependent transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTYIVKRLLGMIPTLLLVAVVVFLFVHMLPGDPARLAAGQEADQETVELVRQELGLDLPLPQQFVRYFGHMLQGDLGTS
LRTKRPVSTEIADRFMPTLWLTLASMIWSVVFGMAIGVVSAVWRNRWPDRLGMTLAVSGISFPAFALGMMLMQVFSVNLG
WLPTVGASSWKHYILPSLTLGAAVAAVMARFTRASFVEVIQEDFVRTARAKGLSERVVVTKHALRNALIPVVTMMGLQFG
FLLGGSIVVETVFNWPGLGRLLVDAVTQRDYPVIQGLVLLFSLEFILINLIVDVLYGVINPSIRYK
>SEQF2266_AEE67640.1 putative binding-protein-dependent transport periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKVLHPTKLVAAATLAFSVLASPLAHASKDVTFAVAIALETLDPYNTNSTLNQAAGKAYYEGLFEFDKDLKIQNLLATG
YEVSPDGLVYTIKLRDGIKFHDGTDFNADAVKANFDRVANPENRLSRYTQFNRVAKTEVVDPHTVRITLKEPFSAFINAL
AHPAAMMISPAALQKYGKEIGFHPVGTGPFKFVEWKPAEYLKVEKFDGYWRKGYPKVDTLTFRTVTDNNTRAAVVQTGEA
QFAFPIPYEQAAVLAKNDKLDVVDHKNSIMARYLSMNTRVKPFDNVKVRQAINYAINKQALAKVAFNGYATVVDGVVPQG
VDFAYKIGQWPYDPAKARALLKEAGYPNGFETSLWSAYNDGTSVKVVQFLQQQLAQVGIKASVEVLESGQRVQRVQQVQK
PEDAKVRMYYAGWSSSTGEADWGLRPLLSTAAFPPVMNNISYYSTPKVDDSLMKALATTDRSEKAELYKNAQETIWNDAP
WAFLVTQNNVYVKSKNLSGVYVEPDTSFWFGDIDLKQ
>SEQF2266_AEE67641.1 putative ABC transporter ATP-binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVDRANSLAMPENRVVQVEDLTVRFVGAERTVEAVRNLSFHVDRGETLAIVGESGSGKSVTSLALMRLVEHGGGRIAQGR
IALRRRNGDIVDLGASSQRAMRSVRGADMAMIFQEPMTSLNPVFTAGEQIAETIRLHQGKDAAAARAEALRMLEQVRIPE
ARSVMDRHPHQLSGGMRQRVMIAMALACKPALLIADEPTTALDVTIQAQILQLIRQLQEEMRMGVVFITHDMGVVAEVAD
RVLVMYRGDKVEEGPSERIFAQPRHHYTQALLSAVPKLGAMQGTDHPARFPLLRVDESAAAEPEPPATPAGPAPAESGPA
GERQPILSVRDLITRFDLRGGIFSRVQRRVHAVEKVSFDLYPGETLSLVGESGCGKSTTGRSLLRLVDSQGGQVHFGGRD
ITKLKTAELQALRRDIQFVFQDPFASLDPRVTVGFSIMEPLLVHGVASGKQAERRVAELLERVGMPPEMAQRYPHEFSGG
QRQRICIARALALDPKVVIADESVSALDVSIQAQIVNLLIDLQRDLGIAFLFISHDMAVVERVSHRVAVMYLGQIVEIGP
RRAIFENPQHPYTRKLMAAVPIADPARRHMSRTLLSDEIPSPIRQLNDEPVVAPLVAVGPDHFVARHSVGGAY
>SEQF2266_AEE67642.1 putative L-asparaginase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQPIIAIHGGAGAISRAAMPADKEKEYLDALARIVAAGQAVLAGGGSAIDAVTEAVRLLEDCPLFNAGHGAVFTSAGTH
ELDAAIMDGATLRSGAIANVDCVRNPVRAARAVMEHSKHVFFVGEGAVALAREHGLELVDPGYFSTEARREQLLRVQRET
PGAAVLDHDGQALVTQGQPAPADPLDADRKFGTVGAVALDAQGNLAAATSTGGITNKQVGRVGDAPLIGAGTYASNRTCA
VSTTGTGEMFIRMVAAYDVAAQMEYCGATLAQAADRVVHDKLPTIEGKGGLVAVDAHGNVALPFNTEGMYRGHGRVGEPP
VVAIYR
>SEQF2266_AEE67643.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLPPTSIADRIARAQPAFSRTQHRMAEYVLAHQFRVATMTIDEFAVAVGVSVATANRFARVLELPGYPQFRAELARGFE
SALEPVEKLRIELAHSASAAQVFAATLQEDIYNAQMTLQALDAGACERAVEAILNAERVFIIGFGASGFLAGLLQRGLCM
HLHAVESLAGPGGVSHAARQMSRMTSRDLVIALAFPRYLADTVTLANAAKLAGVPVLVLTDKPTSPLAPCATVALYAHMS
RQLSSNAETAALGLIEALSAAVAHRAKNSIAAAAGVAQSVMPWLIHGEAGAGKR
>SEQF2266_AEE67644.1 putative coenzyme A transferase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAWSRDEMAARAARELQDGFYVNLGIGLPTLVANHVPKGVEVWLQSENGLLGIGPFPTDDEVDADLINAGKQTVTTLPGS
SIFSSADSFAMIRGGKINLAILGAMQVSEKGDLANWMIPGKMVKGMGGAMDLVAGVGKVVVLMEHVARKKDGTEDIKLLP
ECKLPLTGVGVVDLIITDLGVMKVTEDGLKLLELAPGVTVDEIKAKTLAKLDVSAVK
>SEQF2266_AEE67645.1 hypothetical protein BPTD_2359 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRDEHAVRTLEVGDAHQVDIPLRWGDSDCLNHVNNTIYFRMMEEARVRILYEAGYELPGQFGVILAHASCDFLRPLTYP
GEVRVTHTVVRIGRSSMDLDLTLEKVGEEGEPYARSRNVLVWVNYQTNRAEPWPARLLERMAAQMRPAA
>SEQF2266_AEE67646.1 putative electron transfer flavoprotein-ubiquinone oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEYDVVVVGGGPAGLAAAIRLKQLAAEKNHEVSVCVLEKGSELGAHILSGAVMDPQALTELIPDWKEKGAPLNVPVTQDK
FLFLSATGARSTPNWLLPACFHNEGNYIVRLGDVVKWLGEQAEALGVDIFPGFAAAEVLYDENGAVHGVATGDMGVARDG
THTDHYQPGMELLARYTLFAEGSRGQLGRQLIGRYKLDEGRNPQSYGIGIKEMWEVDPAQSRPGLVVHTAGWPLDSDTYG
GSFLYHLDNNVVVVGLIVGLDYANPWLSPFEEFQRYKTHPAIRGTFEGGKRIAYGARAITAGGLLSLPKLAFPGGALIGC
EAGFLNASRIKGSHAAIKSGKMAAEAAFDAVASDRSHDELASYASAFESSWLHAELNKARNFKQWFKKGRTVGTFMTGIE
QWLLKGKFPWTLRHNKPDHACLQPASQCARIDYPKPDGKLTFDKLSSVFISNTNHEENQPVHLTLKDDSVPVAVNLAKYG
GPESRYCPAGVYEFIKDDHGADRLQINAQNCVHCKTCDIKDPTQNIVWVAPQGGEGPVYSGM
>SEQF2266_AEE67647.1 hypothetical protein BPTD_2361 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSERVLLAGCGDLGVRVARRLLARGDQVWALRRQPPPAEDGGLRWIAADLTQPATLAGLPDGLTQVVYLPAPGAHDPARY
REIFVDGLRHLRDALDTAALRRTLFVSSSAVYGEHDGQWVDEHTPPGPLGFNGRSLLEAERSLDAWPGQAVVLRLAGLYG
PGRLQLLERLRAGQARAPVDPPHWANRIHIDDAAAAIAHLLRLPAPEKLYLGCDDTTLPLHELYAALATLAGAPPPGEGP
APAQVGSKRLCNARLRASGLQLQWPDSRAGYAALLDGKATLQATIHTTTKRSIP
>SEQF2266_AEE67648.1 putative cytochrome p450 oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIADTARQHRGDSMQPADPLEAVAHPDPYPYYAALARERPFYHDDRLGLWVAAGPQAIRAVLTCPAARVRPPGEPVPAAL
GAGPAAQMFGRFIRMNDGAVHERLKPMLTAYLTQRTAADLAEPAWPAIGNDPAQVDRYLYQAPVHAQACLMGLPDEVAAS
CAREIEAFMAACRPGADAAAVARADQAAQALQARMLAHLRAARGDAALGVLRRLALAGGVEADALAANLAGLLLQSCEAG
AGLLDNALVHAGRLSPAAAPDLLHTCVEIVTHVARHDPPLHNTRRFLAAPATLLGQSAPAGAGILVVLAAAHALAEGAWP
WTFGAERHACPGRTPALLHAAQALAHALRHGVDAPALARCVRYRPLPNARVPRFHFPPGDTP
>SEQF2266_AEE67649.1 hypothetical protein BPTD_2363 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIAVIFEVQPAAEGGRAAYLDIAAGLLPHLRAIDDFISVERFESLSTPGKLLSLSFWRDEEAVRNWRALAEHRQAQSAGR
NGVFQDYRLRVAHVLRDYGMQARDQAPPDSRQAHDGPAGG
>SEQF2266_AEE67650.1 low-specificity L-threonine aldolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDLRSDTVTRPSAAMRQAMAAAPVGDDVMGDDPSVRRLQDEVAARAGKEAGLFFPSGTQSNLAALMAHCARGDEYLVGQ
QAHTYKFEGGGAAVLGSIQPQPVDHAADGSLPLDRLAAALKPGGDPHFARTRLLALENTFQGRVMPAGYVAQATGWAREH
GLSTHLDGARVFNAAVASGVPVQQLCEPFDTVSICFSKGLGAPVGSVLVGSRALIEQAHRWRKMLGGGMRQAGILAAACL
HALHHHVERLALDHDNAARLAAGLDGIDGVRVLGQHTNMVFAEFDPARCESLTTALRGQGILMRAVYGGPTRLVTHLDVD
ADGIDRVVDAVRGHCAAAR
>SEQF2266_AEE67651.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRAAFDRVGLMLLTIFVWAGSWIAMKLVVPYIGPFDFIAVRYLAGAVVLFSILVATGRPLGMPPWKLTLLAAATQITGF
QGFVQTALISGGVGKVSLMAYTMPFWVVLFAWALQGERPTARHWGGIALAAVGLVCFLDPWAGLGDLAPVALGLCSGLCW
GLGTVLSKRMFERHAPDIMTFTAWQMLLGGVVILPFAWLVPQIPAQWGGWRLWLGMSYIVLVATALGWILWLLVVRRVPA
SIAGLSSLGVPVVAVLLAWAILGERPTLTEMAGMALILFGLWVVSRAARPAPRAAS
>SEQF2266_AEE67652.1 acetyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNAIQSVLVENRVFPPPASAVQGAAISGMDAYWALCEEADKDFNGFWSRLARENLQWTKSFTQVLDESEAPFYRWFGDG
ELNVSANCLDVHLHNGNADKTAIIFESDDGKVDKISYRELLARVCRFANGLKAMGYKKGDRAIIYMPMSIEAVVAVQACA
RLGVTHSVVFGGFSAKSLQERIVDVGATVVITADEQVRGGKTIPLKPAVEEAFAMGGCEAVSKVVVYRRTGGKIAWQEGR
DVWMHDVEAGQADTCEPQAVNAEHPLFILYTSGSTGKPKGVQHASAGYLLWALLTMKWTFDARADDVYWCTADVGWVTGH
TYITYGPLAAGVTQVVFEGVPTFPNAGRFWDMIARHKVSVFYTAPTAIRSLIKAAEANQEVHPRQYDLDSLRIIGSVGEP
INSEAWIWYHKNVGRERCPVVDTWWQTETGGHMLTPLPGATPLKPGSCTLPLPGIVAAIVDETGGDVAQGNGGFLVIKRP
WPAMIRNIWGDPERFKKSYFPPELRGYYLAGDGAQRDADGYFWIMGRIDDVLNVSGHRLGTMEVESALVAHEMVAEAAVV
GRPDDTTGEAVVAFVVLKRSRPEGDEAQAIARQLRDWVGKEIGPIAKPKDIRFGDNLPKTRSGKIMRRLLRVVAKGEEIT
QDVSTLENPAILEQLAKPL
>SEQF2266_AEE67653.1 hypothetical protein BPTD_2368 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTKPVLVADDVKKILAAAEAHALANKWAVTIAVVDDGGHLLGQLRLDGAAPISARIAPAKAGTAALGRRESRVYEEIIN
NGRQAFLSAPLLEGMLEGGVPVTVDGEVVGAVGVSGVKSSEDAEIARAGIAALGL
>SEQF2266_AEE67654.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHRHSNPALPERNISLSSRGLRLLAVVACAVGLAGCAGTGAKKTSYTFESDPYDTEWVASADDPIGILVTQKLKRDRRAG
QSQTSGENPLVSEALGQLGVRYRFDGISPDTGFDCSGLVAHTAERSLGLKLPRISADIARWGTNIDRKELRPGDLVFFNT
LGRRYSHVGIYMGENRFIHSPSSGGVVRVENMTVAYWAKRYNGARRIDDSRLASARASN
>SEQF2266_AEE67655.1 hypothetical protein BPTD_2371 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAGLSAVVVGADRLGNIPDLLKGHNISITHHISGRDPSHQKKTLQLPSGTQLVILLTDFLGHNVMKTFRHAAQRGGIRV
VACRRSVCSMQQALHQCGLCARSLPRGNAVPPS
>SEQF2266_AEE67656.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLGEYNLLTVHN
>SEQF2266_AEE67657.1 transcriptional regulator CysB-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLQQFRFVRETIRRDFNLTEAARMLYTSQPGVSKAIIEFEDELGIKIFERHGKRIKGLTKPGLAVSQVIDRIMREVDNL
KKVSDEFARRDEGGLVIACTHTQARYLLPRVIPAFRKQFPKVHLSLAEGSPSQLAEMVLHEQADLALATESLALTPGLAT
LPVYTWEHTVVVRPDHPLTELTSSQARRLTLAQLAEYPIVTYDRAFTGRTTIDEIFANQGIHPDIVLEAIDADVIKTYVD
VGLGIGIIAGVAYDPRRDANLVGLPVGHLFGTHTTRVGVKSGVFLRDYVYTFMEMMAPGLTRQVVSEAVQGRAGLNG
>SEQF2266_AEE67658.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGGKLVQSKTTQWRDVINPATQEVVAQVPFATREELDLAVANAKEAFKTWRNTGQGARMRVMLKLQQLLRDNTGKLAEM
ITREHGKTLPDAEGEVGRGLEVVEHACSIANLQLGEYAENAAGGIDVYTLIQPLGVCAGITAFNFPVMLPCFMFPIAVAC
GNTFVLKPSEQDPSSSLFLAQLALEAGLPPGVLNVVHGGPDIANGLCEHPDIKAVSFIGSTRVGTEIYNRASAAGKRCQS
MMGAKNHCVILPDADPEVALNQLVGAAFGAAGQRCMATSVAVMVGEARNWLPDFVERARKLKVNNGVDREADLGPLVSPA
AKQRVEGLIQKGVDEGAKLLLDGRSLKVAGFEQGNFVGPTIFDGVTENMTIYTEEVFGPVLCVVGVDTLEDAVEFINRNP
NGNGVALFTQDGGAARYFQNNIDVGQVGINIPIPVPVAWFSFTGSRGSKLGDLGPNGKQAVQFWTQTKTVTARWSAHGRG
VNTTISMK
>SEQF2266_AEE67659.1 putative ABC transport protein, substrate-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSRARGFAAGLCLGAMLVGQAMAADKPPVKIGILTDMSGTYAGMGGPGSVAAAQLAIDDCLAAECKGMKIDLVSADNQN
KTDVGAAKAREWFDRDGVTAIADLTNSAVALAVQGIAREKNKVVMFSGPAATALTNQDCSPLGFHWMFDTYSQSAGGAKA
TVRAGGKSWYFITVDYAFGHSLEADTAKAVQALGGTVAGSVRHPLNAPDFASYLLQAQSSKAQVVALANGGQDTVNAVKQ
AREFGIVEGGQRLVSLLVFLSDLRALGLDNAQGLSYVDGFYWDYDDATRQWSARFEKAFRGLKPTMVQAGVYSSVLHYLR
AVAASGSTDGKVVADKMRELPIKDPIMRNASIRPDGRVIHDMYLYEVKKPAESKGGWDYSKLVATIPAAEAFQPLAESTC
PLVKK
>SEQF2266_AEE67660.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDWDSLRYFLEVARTQRVSAAARKLGVEHTTVARRVRALEAELDSLLFEKSRSAGYVLTEDGQRLFVFAEQMESTVHTA
RENLSGIGQALSGHVRIGATEGFGSYVLTPLAADFQRRYPHITLDILPVPRFVSLSKREADLAITIERPQRGPYVCTKLC
DYTLMLYGTPAYLARHAPIRERADLAGHNFIGYVDELLFSERLRYLEDVLPNSQVVLRSTSVIAQYHATLQGQSLAILPC
FIAAQDPRLTPVLPDDIAITRSFWMYCHEDLRRLKRVSALWEFMRRSVMRNAALLQGRGAALQYLP
>SEQF2266_AEE67661.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLFKRSVVSEITSHAGVVFSTLVVVWLSVLLVRLLGEAAGGSIGADVVLGLAAFSTITALPTILAVSLFIAVLTTVTRN
YRESEMVVWFASGLSLADWLRPVARVAVPIAMLVAALTLVASPWAYRQIGEYRELFEQRSDLSKVTAGQFAESGRGDRVF
FAEDPVRPGDELGAVFARSIDPEWLSVLTASNARSETLPNGDRFLVLGEGHRYDLKPGTPEIRLVNFDQYGVRLESKAGE
DPMAEARAAAERSSKARSTMQLVQDNTDSSWSQIMWRVAMPLAALNLALLAIPLGAVNPRLGRSGDLLIAGLVGLLYMNM
INLSRAWISSGKISFSIGVWAVHAVVALLAAYLLMRRLRVKAPRNAGRGA
>SEQF2266_AEE67662.1 leucyl aminopeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFSTQTTASLHQIKTAALAVGVFADGVLSAAAEVIDRASHGAVAAVVKSEFRGRTGSTLVLRSLAGVSAQRVVLVGLGK
QAEYNARAHASAEQAFAAACVAAQVGEGVSTLAGVAIEGVPVRARARSAAIAAGAAAYHYDATFGKANRDARPRLKKIVQ
VVDRAASAQAQLGLREGAAIAHGMELTRTLGNLPGNVCTPAYLGNTAKKLAREFKSLKVEVLERKQVEALGMGSFLSVAR
GSEEPLRFIVLRHAGKPAKKDKAGPVVLVGKGITFDAGGISLKPAATMDEMKYDMCGAASVLGTFRALAELELPLDVVGL
IAACENLPSGKANKPGDVVTSMSGQTIEILNTDAEGRLVLCDALTYAERFKPAAVIDIATLTGACVVALGNVNSGLFSKD
DALADALLAASRQSLDPAWRLPLDDAYQDQLKSNFADIANIGGPPAGAVTAACFLSRFTKAYPWAHLDIAGTAWRGGKDK
GATGRPVPLLMQYLLDQAG
>SEQF2266_AEE67663.1 hypothetical protein BPTD_2379 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRIDFAFGAPDRLRAACRTARKRFQAGQRLVVYCADGGRLAAFDRMLWALEDVSFVPHVLANDALAADTPVLLTAGDPA
AALALATTGDSRPWLLNLDDGCPPNFDGYERLLEIVSDDPADRQAARQRWRDYQNAGHALHSHDLSRAGEA
>SEQF2266_AEE67664.1 hypothetical protein BPTD_2380 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHHYSDSSIPTLTDRVEPGLGSPQAPAAIPRLSEQASAPPVSDESGAASAPDTPFQPGDAVLRAVLQAELEETLTAAID
EAVAGIRARLDAELPAILARVMRNVRPG
>SEQF2266_AEE67665.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNETRPSPFNRSGAYAGAPGEVVRNKVLRNTYWLLALSLVPTVLGAAVGLYTGINQVMGASPGLSAIVFLVGAFGLMFAI
EKNKNNSLGVVLLLAFTFFMGVMLSRLLGFVLGMGNGAQLVMTAFGGTAIVFGTMATLATTIKRDLSGMQKWLFTGAVVI
LVAALANIFLQMPALMLTISVLAIVIFSAFMLVDLQRVINGGETNYVSATLAIYLDVYNVFSNLLMLLGIFGGDRE
>SEQF2266_AEE67666.1 hypothetical protein BPTD_2382 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYLRYALAGALTLACSGVQAEDFPARAITMIVPAAAGGNADITARLVGQEMSKQLGQPVVIENRVGAGGRIGTQAVVRAA
ADGYTIGYAHVGTLVLHRFLFKEQMYDIDKDLAPIGLVAETPNVIVVSQASPYRTLQDLIGASKAQPDRITMTSADPGTT
SEVGVKLFIAQTGAGVRQIPYKATAAQLADLLGGHVDSMMENLPPLIGNLKDGRLRALAVTTRKRVASNPDVPTVAEQGY
PDYEQGAWSALVAPAGTPPEALARLNQALNAALAAPAVSAELRSRSQEPLGGPPAQVQAQVDKELPKWRSVIQAANP
>SEQF2266_AEE67667.1 hypothetical protein BPTD_2383 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLMAGVHGDEWEGQAALLELWHALPGLLRRGTVYVAPAANAEASLAGTRLSPADGGNLNRAFLGAPARGYTEAVAHALQ
TRILPQVQYMIDVHSGGASLRYLPATVITRYGDDPWDERVARLARGFGLARCLFFRGVETGSMPAAASRLGVARLSAEIG
GGAETSQELVRLCRDGMLSCLAGLDMVDAHHAMPGPLEAFHDVDAPRASMRADAPGVFIPSVALGQQVAAGQQVGTLCEP
ARPDRPPLTLASPQDGTVVCLRALARSDDGDCLLQIAPARPFETLSTLY
>SEQF2266_AEE67668.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRNHAMTFTLRQVETFRTVYETESVTAAARRLDVSPATVSATLAALETAISMRLFERVRQRMVRTPEADLLYEEIRRQSL
GLETLGRKIRAIKGAGQPRLRVGTIHAYSGLVIEQALVRFRGRYPDTPLYLQVRDSNTLRDMVVAGELDLALVADESELQ
GLRGHCLARLGAVAVFPRGHALARFAQLELSQLADAALVLLNREDGSRKRLDAVFAQRGIAPHAAIETPYSSTVCQLALA
GHGVGIANPATAMGMAQAGLEFRPLDADVHFACYMILHGSRPLSSAGKYWATCLRAALAPLVEQFGVDAQV
>SEQF2266_AEE67669.1 hypothetical protein BPTD_2387 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRRAQRVHDIPGYMLHATAWRETSLIVQAFSREYGCIALVAKGAKRPYSVLRPVLSAFQPLLLSWSGAGEVKTMTRAEI
AGVRPLGGPALMSAWYMNELLLRLLPCEDAHPVLYDAYDTALTQLSAGSRAAGALRRFEWILLRETGYGLDEAEPDFNDP
AIEPALRRDLRERLEANLAGRPLSTRKVLLELQRL
>SEQF2266_AEE67670.1 GTP-binding protein Era [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNPQFRAGFVAIVGRPNVGKSTLTNALIGTKISIVSRKAQTTRHRIHGVLTREHEQFVFVDTPGFQTRHGGAMNRMMNR
VVTQALADVDVVVHVVEAGKWSEGDAKLLPLLPKSRRSILVVSKIDALKNRDELFPFVSKLMALHAYDAVVPVSATKGQQ
LDQLLDEIAAGLPQGDPMFEEDTLTDRPVRFIAAELVREKIFRLVGDELPYGCTVVIEQWEETERGVRIAACVVVERESH
RPILLGAGGMHMKRIATEARQDIAKLLDMPVHLEIYIKVRKGWSDREGALRDLGYE
>SEQF2266_AEE67671.1 ribonuclease III [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAMSLATLETRLDHRFGDKALLEQALTHRSHGARHNERLEFLGDSVLNFVVAAMLFERYGKLDEGDLSRLRANLVKQAS
LADIAQRLDLSQYLRLGEGELKSGGFRRPSILADTVEALFGAVFLDAGFEAARRVIVRQYQPVMAHVDPKTLGKDAKTLL
QEFLQGRKLALPQYTVVATHGAAHSQQFEVECAIPALEIKIVAPGASRRAAEQSAAKVALEAAQAVLPAARAARKSGKAR
KTAQLSLPVAVAQEVK
>SEQF2266_AEE67672.1 signal peptidase I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSWNFALILFVLLVITGVIWGLDLALFRKRRERRAQAAAAQVDAAGITDAEQAGRERREAIDAARRAPWWIEYAVSFFPV
ILFVFVLRSFVVEPFHIPSGSMLPTLQSGDLILVNKFSYGIRLPIIDRKIIETGSLERGDVVVFRYPVDTDVDYIKRIVG
LPGDQVAYLDKKLYINGKLVPHERDGDYFEPDRVSYIAQYKEKLGEVEHKILLDEQKIQDFGPIWKFPSIQNCQYARNGV
RCTVPPGHYFAMGDNRDNSADSRYWGFVPDGNIVGKAFFVWMNFSDLSRIGRFH
>SEQF2266_AEE67673.1 GTP-binding protein LepA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQHIRNFSIIAHIDHGKSTLADRLIHRCGGLAEREMSAQVLDSMDIERERGITIKAQTASLQYKSQDGTVYNLNLIDTPG
HVDFSYEVSRSLSACEGALLVVDASQGVEAQTVANCYTAIELGMEVLPVLNKMDLPQADPEAARQEVEDVIGIDASEAVL
ASAKTGMGIDEILESIVARVPPPKGDPSAPLQALIIDSWFDNYVGVVMLVRIVNGVLKPKDKILLMASHATHLCEQIGVF
TPKSQPRPELSAGEVGFVIAGIKELEHAKVGDTITLAGKPAAEPLPGFKEVKPQVFAGLYPVESSEYDQLRDSLEKLKLN
DAALMFEPEVSQALGFGFRCGFLGLLHMEIVQERLEREFDMDIITTAPSVVYEVEQRDGTVVTIESPSRMPEIAKIADIR
EPIVKVTLFMPQEYVGPVMTLCNNKRGVQLNMSYHGRQVHLTYEIPLAEIVLDFFDKLKSVSRGYASMDYEFVEYRSADV
VKVDLLINGDRVDALAMIAHRNNARYRAREVVSRMRGLIPRQMFDVAIQAAIGAEVIARENVKALRKNVLAKCYGGDISR
KKKLLEKQKAGKKRMKQVGSVEIPQEAFLAILQVEDK
>SEQF2266_AEE67674.1 serine protease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAITVSNLFFRRFGAAALVAFMAVTAAGTQVQAQTQVAPPAVALPDFTGIVEKVEPAVVNIRTTATVPVRGGPGGGNDP
YELFRWFFGPDFQPPGPAPGQRRKQPQPQPEERTIPRGVGSGFFISADGYILTNNHVISDATDIYVTLTDGREFKAKVIG
SDDRTDVALIKIDAKDMTPLTIGDPKTLKKGQWVLAIGSPFGLDSTVTAGIVSAIGRDTGEYLPFIQTDVAVNPGNSGGP
LLNLQGEAVGINSQIISRSGGFMGISLAIPIDEAMRVVDQLRATGKVTRGRIGVQIGEVGKDVADAIGLPRAEGALVSSV
EAEGPAESAGVQPGDVILKFNGEPIKRWSDLPRIVGETKPGTSAKMDVWRKGRNVTLSVKVAELKSDRSAATADEGKQAE
PTAENHLGLGVVDVPSDMQRKLRIKGGAQVRVAEGAAAQAGLQEGDIVLAVNDTDVTDAAQFNKLVSRLDKKKAAGLLVR
RGDQTQWVAVQPASK
>SEQF2266_AEE67675.1 putative sigma factor regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPLLYMRRPALGRMTWRQRQTAGLAAMAVLMGLMAIYARPVRAAAPAVPEDPVLLLSSIQQAARKQDYAGVFMYQQGES
IQSSRLVHVLDGTGERERLEILDGQPREYLRHNEDVQCLIPERKTVLLERRRGDRFPGLLLGDPAGLAENYHIRAESQLH
RVADRQCRLITVEPRDALRYGYRLCADVATNLLLKAQTLDAARRVVEQVSFTSIRLGGDVDPAMLTSRWSTRDWRVLEPV
MKPVDLAAQGWRITAPKGFSAVLQVARSMGPATVNQLVLSDGLAAISVFIEPYDSRRHAHPPEGLARRGAINIYGTRIAD
FWLTALGEVPAGTLEQLAETTEYVPVDAAKQQ
>SEQF2266_AEE67676.1 hypothetical protein BPTD_2394 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVMQTAAKSLTAESSWEESVSAWMDGEGSEDFFPEMSHPHGRQTWDTYHLIGDALRNADLAVSPSAQFQARLARALEAE
LPIVAAPRRRSPLRLGLSGLAVAAAVATVAWVAHPYLTGAPTGETRVLADATPASAGDDAGLRDYLEAHRQVAGPSAVRQ
VSFDAGAGR
>SEQF2266_AEE67677.1 RNA polymerase sigma factor RpoE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSERDVDAELVARVQRGDKKAFDLLVLKYQRKILRLLARMIRDPAEIEDVAQEAFIKAYRALPQFRGDSAFYTWLYRIAI
NTARNWLASSGRRPSAPNAIETEDGETFNETDNLTDISTPESMAATREIAETVNAAIEELPEELRTAIVLREIEGMSYED
IAQSMDCPIGTVRSRIFRAREAIASRLRPLLDTDAERRW
>SEQF2266_AEE67678.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPDGGIFDNRWHLRLPVRVPALAVALGLLAMLAAAGSAAVALVQLQWLAPLSAGMLAVAAGGLGGLLWLRGSRGGAPAL
CAAPVPGGWRVLGGRGWMQARLLAVRQGPLWLRLELGLDAEAGSRVTNSKIICTVWRPALPPGHWRRLRLMATAAHVQAA
TSWGAS
>SEQF2266_AEE67679.1 3-oxoacyl-(acyl carrier protein) synthase II [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRRVVITGLGIVSPVGNDIASAWDNIVNGRSGISRISRFDPTPLTTHIAGEVKDFDVTQYMPAKEARQMDTFIHYGLAA
GMQAWRDCGLEVTETNAERIGVIVGSGIGGLPRIEETQTEMLAKGPRRISPFFVPASLINLISGQLSIAYGMKGPSYAVV
SACTTGLHCIGDAARLIEYGDADVMLAGGAESTVSPLGIGGFAAMRALSTRNDDPTTASRPWDRDRDGFVLGEGAGVLVL
EEYEHAKKRGARIYGELAGYGMSSDAHHITAPDKDGPRRGILNALRNGGINADEVSYVNAHGTSTPLGDKNETDALKLAF
GDHASKLVVNSTKSMTGHLLGAAGGIEAVFTTLAVHNQISPPTINIFNQDPECDLDYCANEARPMKIEIGLSNSFGFGGT
NGSMAVRRV
>SEQF2266_AEE67680.1 acyl carrier protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MESIEQRVKKIVAEQLGVNEAEIKNESSFLDDLGADSLDMVELVMALEDEFETEIPDEEAEKITTVQQAIDYINSHGKQ
>SEQF2266_AEE67681.1 3-ketoacyl-(acyl-carrier-protein) reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEKTSTELQGKIALVTGATRGIGRAIAQELAARGATVVGTATSEAGAQAITEALAAQGGRGVVLDVTDAQACEALIEQLG
KDGGGPHILVNNAGITRDTLAMRMKDDDWSAVIDTNLAAVFRLSRAVLRGMMKARWGRIINITSVVGASGNAGQANYAAA
KAGVAGMARALARELGSRNITVNCVAPGFIDTDMTRILGEDQTAALLQQIPLGRLGAPADIAHAVAFLAGPQAGYITGTT
LHVNGGMYMQ
>SEQF2266_AEE67682.1 acyl-carrier-protein S-malonyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLAFVFPGQGSQSVGMLDAWAGNAAVADVVARASAALGQDLGALMAQGPAQQLNLTTNTQPAMLTAGAACFAAWRAAGG
PMPEVMAGHSLGEYAALTAAGALALEDAVRLVRVRADAMQAAVPVGAGAMAAVLGLDDDAVRAACQQAAQGEVVEAVNFN
APAQVVIAGHKAAVERACEAAKAAGAKRALLLPVSAPFHSSLLKPAAEVLQGALAGVEVSAPQVPVLNNVDVATPAEPAA
IRDALVRQAWHPVRWVETLRAMKELGVTHVIECGPGKVLTGLTKRIDADLTGIAITDPASLEAALAAVNGN
>SEQF2266_AEE67683.1 3-oxoacyl-(acyl carrier protein) synthase III [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEKAMKYAKIAGSGGYLPERVVTNDDLAAELATRQISTSDEWIVERTGIRQRHLAERGVTTSQLATEAARRAMDDAGVQA
DEIDMIIVATSTPDYVFPSTACLVQANLGAKGGAAFDVQAVCSGFVYAMTTADNFIRAGRARCALVIGAEVFSRILDWND
RGTCVLFGDGAGAVVLKAADEPGILAAHLHADGSQTKILCAAGNVAYGDVTGDPFLRMDGQAVFKQAVTVLDRSARDVCA
EAGVEVDDIDWLIPHQANVRILNFLARKLRVPTERVVITMDQHANTSAASVPLALDVARRDGRVKPGQLVLMQGVGGGFT
WGSVLARM
>SEQF2266_AEE67684.1 putative glycerol-3-phosphate acyltransferase PlsX [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRIAIDCMGGDFGLPVTIPAAIEFARQFPDTRLLLVGLPDAIEAALAERRDAPRDRLDIVPATEVVSMDDPVEVALRRK
KDSSMRLAAQAVKDGRADACISAGNTGAWMAISRYVLKTLDGIDRPAIATSIPNQTGRATTVLDLGANVDCSAEHLLQFA
IMGAALSQAVDHRDRPTVGLLNIGEEIIKGNEVVKEAAELLRASPLNFYGNVEGNDIFKGTVDVVVCDGFVGNVVLKSVE
GLAKMLSSVIREEFKRNFITLLAGAFAKPVLNRLRNRVDNRRYNGAALLGLRGVVIKSHGSADAYAFGFALQRAREAVAS
KLLERTAQTVAQITKRVQSGEAVAPGAAGDTA
>SEQF2266_AEE67685.1 50S ribosomal protein L32 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVQQNKKSPSKRGMHRSHDFLVNPATAIEPNTGETHLRHHISPNGFYRGRKVLKTKADE
>SEQF2266_AEE67686.1 hypothetical protein BPTD_2404 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGSGTDAQNAQSHIDAFMFARQAKRLEGSIPLMRLARFMEGLPEQSGGEAGLARWAVEGGTGQGSSRTGHPISGQPLLRL
RVRAAPMLVCQRCNQPFVYPVDNTVVLQLVKSEEDLDEDLSETQDEDFADDLPEKVVGSHNFDLLAQVEDELILSVPYVP
RHDVCPGAQAESGEASQEPAVKRPSPFAVLEQLKHKD
>SEQF2266_AEE67687.1 Maf-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAIPPKLILASSSRYRRELLSRLRLPFTAISPDVDETPQPGEAPADLALRLSVAKAMAVAATHPGSVVIGSDQVATVDG
EPIGKPGGFERAREQLRRLSGRAVEFHSAMAVTDGVHTETADIVTLCRFRTLTDAAIDAYLRAEEPYDTAGSAKAESLGI
ALMDSIRSDDPTAIIGLPLIALTRMLGRFGLDPLTGHPA
>SEQF2266_AEE67688.1 hypothetical protein BPTD_2406 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGALHLIPVGLGDAPPERWLPADVRALAGRLDTYIAENAKTARAFLKLLGTVRPLQEITIHTLTDAVPAGQIEQWLAPL
RGGAEIVLVSKAGCPAVADPGAKVVAAAHRLGLAVRPWVGPSSILLGLMASGLDGQRFAFHGYAPVDPAERARQLRAWEQ
HSARHDQTQILIETPYRNGAMFATLLAALRPDTRLCIARALTTGDELVQTRTIADWKRQPAPELDKKPTLFLFLAR
>SEQF2266_AEE67689.1 putative exported hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPWITRAAPIACLLALAGCAARGPAGLDLDTSITAVSQSSRVRAVVLHYTSTGNENSLKILSERKVSAHYLITDTPRPRV
YRLVDETRAAWHASISAWYDQSTMNSTSIGIELVNPGWTNGEGNWTRGGHGDTDSRHWAPYSDAQIETLIVLLRDIVARH
GIAPENIVGHSDIAPQRKVDPGPLFPWQRLAQAGLGRWYDEAGAAAHLARLQTEGVPDIAWFQGQLARLGYATPQSGVLD
TATRNVLAAFQMHYRPARHDGQPDAETAAIMLALR
>SEQF2266_AEE67690.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAGLRVFLFFSLGYLVSYLFRGLNIGFGPTLSAELGLSAADLGTLTSLYFLGFALLQIPAGVLLDTWGPRRVNAALLVV
AAVGTLVYGLSQGLPGLMVGRLLIGAGVSVCLGAAFQALALNYPLARLPLINGLVMAVGGLGGVLVGSPLSWLLNFSTWR
EVSIGMVVVTLCVAALLWFGAPREPARDRPHASLGEQLRGTFVLLRTAHYWRLVSLPVATGGVFYGVQSLWVRPYLTDVN
MLPAAPAAALVSLLGFAMMGGNVGLGAMARRVERMGLGLYGFSGVCLALFILIQLLIVLRAPVPLALLWAGYGVFGSANI
LVFALLAGEFPRELLGRVAATTNLLTFVSIFVCQVTFGWIVELWPRGDAVYEPGSYPAGGYLAAWGAFLALQIAVALYYF
WPRRRAASARQGA
>SEQF2266_AEE67691.1 hypothetical protein BPTD_2410 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLFLLSPAKKLDYDSPVHVETHTQPLFVDQAAALIKVLKTKSADEIAELMSLSPALAELNAGRYGAWKRSFTQANSRQAV
LAFNGDVYEGLQADTLSARQLDWAQDHVVILSGLYGALRPLDLMQPYRLEMGTRLHTPKGKNLYEYWGSGIAEYLNERQA
GAKAPVIVNLASEEYFKVVDLKTLKARVVQCVFQDWKNGAWKVISFHAKRARGLMARYAIAHKVARPEGLQGFDSEGYAY
DAAASSADKLVFRRKQA
>SEQF2266_AEE67692.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67693.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKGKVAVVTGSTSGIGLGIASALAQQGADIVLNGFGDAADIEKLRAGLASQYGVQVRYDGADLSKGEAVRQLVSGAVAE
LGRIDILVNNAGIQHTALIEDFPADKWDAIIALNLSAVFHGTAAALPHMKKQGWGRIINIASAHGLVASAAKSAYVAAKH
GVVGLTKVTALETAGMGITANAICPGWVRTPLVEKQITALAAKDGVDQESAARELLGEKQPSLQFVTPEQLGGTAVFLAS
EAAAQITGTTISVDGGWTAR
>SEQF2266_AEE67694.1 putative membrane efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELLTILLIAAVLCVPLAQRLGLGAIPGYLLAGGVIGPSGLGLVTDVPDIMRVSEWGVVMMLFVIGLELAPKRLWAMRRE
VFGAGTLQMVVCGALLGAVFGAGLRHLAGMGWQAAILCGLSLALSSTAVALRLLEERGLVRTPLGRSALGVLLLQDMAAI
PMLVAAGLLGSDGDSAPSFEAALVAVVVVLACYRLRLLDWAARSQLHELFTAATLLVVLGTAQLFDYAGLSAGLGGFLVG
MLLAESRHRNELEHTIEPFKGLLLGLFFLAVGMSVNVEEALDYWPYVLAGVVALLSLKALVLYGIARLMGLPHYHRLLYA
LVLAQGGEFSFVIFNEAWDNHLMSLEQRDLLAIVVAISMGAVPIVIRLLERLPGRYGGIGDMAVTPVGFAGSPPPQSAAD
NEERSGPG
>SEQF2266_AEE67695.1 alcaligin biosynthesis enzyme [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNREIYDFVAIGIGPFNLSLASLSAPLRGVRTLFLDKKSGFDWHPGMLIETSTLQNPFLADLVSLADPRSEYSYLNYCKL
TNRIYSYYMRENHYLSRAEYTRYCQWVAARLPNLRFGCDVQGVLHDPESHSYLVTGQHTMSGQRFMFRCRKLVLGLGSQP
YLPACCDRRAAPFIHSADYLRHKYELQGRASITIVGSGQSAAEVFHDLLRESGRHDYSLAWITRSPRFFQMENTKLTLEL
ISPDYTEYFHDLPEARRQEILTQQNSLYKGINASLINQIYDLLDEKVHDGDNRYTLLTNSELRACRYDPLQERFQLDFQH
LDCDRPFSHATDGLVLATGYSHEIPACINPIHDRIAWNADGSYRIGRNYAIDHEGSEIFVQNTGLLSHGVTNPDLGFCCY
RNSQILRELTGTEHYRIETRTALQEFSPPADGVLKHRPARRAERRPTVAARPLMDIHRATL
>SEQF2266_AEE67696.1 alcaligin biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMTMMATFLDVIDQKARSHYDEGKGLALRSLDPEADAAQLQQWFSMDYARFWSMQDSSVHQVRDFYTALCSSGHAGAWLG
LHHGRAAFLVECYDPARDQVGEHYCVRPGDLGMHLLIAPPTEHIPGFSRAVFALVMRFMFDRLHAARVVVEPDVNNTKIH
ALNLSMGFVYAGLARFREKTASLAFCTRAQFEQAQRQELTQ
>SEQF2266_AEE67697.1 alcaligin biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRTTPPHPAEIVAHLQPEIWNKVNRLLVRKAISEYAHEWLLEPQRLGSGETPGFERFRLTLADGAQYDFDAQVMAMRHW
RIPPESIVKTVAGVPAPLDALQFVIEIRDKLGLPVDRLPIYMDEITSTLHGSAYKHGRTTLGAAALARADYQTIETSMIE
GHPSFVANNGRLGFDAEDYHGYAPEAATPVRLMWLAVHKDNAHFSCLSDMDYDSLMSEELGESAVTDFAARLREQGLHPA
DYYFMPAHPWQWFNKLSLAFAPYVAQRKIVCLGYGEEQYLAQQSIRTFFNISRPGKRYVKTSLSILNMGFMRGLSPYYMA
GTPAINEYIHDLISADPWLRANGFRILREVASMGFRNYYYEAAIDTDTPYKKMFSALWRENPLTLIAPGQNLMTMAALLH
VDPQGRALLPELIQASGLDAGTWLERYVDAYLTPLIHCFYAHDLVFMPHGENVILVIQDGVPVRAFMKDIAEESSILNPQ
VRLPQAAQRLAADVPEAYKLLTIFVDVFEGYFRHLTQILVETELMPEHDFWRLVAGRIAAYQQAHPQRLDKYRRYDLFAP
DMIHSCLNRLQLANNLQMVNLADPIGSFQMAPNLPNPIACFRPSWLGSGEALQTLTAA
>SEQF2266_AEE67698.1 hypothetical protein BPTD_2417 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSWDIAAQTGAGVAQDINRTACSDLDALLALAGSLVPGLDGRIGPVSGDIRPGADNRATLRTLQDWWRLRHPEAGSHYLA
LRCWGLLIWQPIYLGVIAVHCSDIAPDLDRLGQPVRDGFIAGYILERHEPLRGCLEQRKQAVAAQLRRICATYFRELSQL
LRLSPRAAACMQADCVLSALLAARANEDKAAVAWAHEQAADWLDRLGIAGHSGYLVYARAGRPVLALDRQVCCHHFRRHD
GDYCSTCPKLPPAERIARIEADEAAA
>SEQF2266_AEE67699.1 putative iron-sulfur protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDIASLAQLQQALSPLHARAYFDEALFVREQEILFRQSALYVGHEKSVPEPGDWRRLPQDDGSRILVRNGNEVALLSNV
CRHRQAVMLGPIAGGEAMKGNLSVTGGNIVCPLHRWTYDGQGRILGAPHFPSTPCLNLSRFPLHNCHGLLFEGPRDPLKD
LDVLFRRPEFDFSDYVLDHVEVHRCNYNWKTFIEVYLEDYHVGPFHPGLGRFVTCADLSWEFGAQYSLQKVGVHDSLEQP
GTEVYRGWHDNLMRYRGGRTPDFGAIWVTYFPTHMIELYPHVLVLSTLYPKGPQETLNIAEFYYPEEIALFERDFVQAQR
AAYMETAVEDDEIGERMDAGRLALLRRGVSDSGPYQSPMEDGMLHFHEWYLSNMGEQLGDSAAPHVASTQRPMPFRS
>SEQF2266_AEE67700.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQPTLPPPPRTRFTVSDFNRMGGSVGFNYRLPGQEGGGAGIENLCIAEGRVEECEIRPGITLIVSDVHVYHHYESTSVM
TPRFSAIVMLQGQARARLDKQDDVRLAAQSGLNALYGDTVAMTGVHPAGQRLRSVNLSVTAPEAADDEYTSEIIWKLMQS
SAPRLRRWPVPHHLLLSIEHLLECDWDQPLRNMVREGVGTQLLAHALAALQHAPVTHRGLTQRDRQLLERVRERLHEAPG
EDHTLDDLARLACMSPSTLRAKFHAVYHRSVFSWLRERRLEVAREQLARGWSVQQAAHFVGYRHATNFATAFRERYGVAP
SQLG
>SEQF2266_AEE67701.1 putative drug resistance translocase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRAASAPSYSLMMVMLGLLSCVAPASIDAYLPAFGALQREFGVPQETVQLTLGVYMFCYAAMLLLHGTLSDSLGRRRVV
LGALGFYVWGALLATAAPGFGWLLAARALQGLSAGAGVVVGQAIIRDCYQGAAAQRSMSYLILVFNLSPALAPVIGGQLA
VHHGWRSIFFMLGLLAATALTLCAWRLPETLAPAKRQTLSLRGLAAGYREVLRNGNFTAPGLAFSLVFAAQGLLIGAAPD
FIANVLDLPETNFAYLFVPLVAGAMTGAAIAARHAGRWRDTRIIGLAYLLMNGSCLAYAIYFWTALSPALPWAVLPPALF
TCGLAMSVPAMTLHILESVPALSGTGASVLGFMQMLAFSIASGWGVPLTYGQPSVLALAMLACVTASALAWAWLQHLSRI
SAKVQAR
>SEQF2266_AEE67702.1 ferric alcaligin siderophore receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDPAHFSPAHSRRLRFFAHVLHLLGALFTQHALAQEARTGNDIAQLPAISVTGREISDLTEGTNAYTTEAMSTATGLTL
SPRETPQSVSVVTRQQIEDQGLTDTGAILATAPGISVTRSDSNRYSFSARGFTIDNFQFDGLVSPILSQWNYGSTDMDAA
IYDHVEIVRGATGLMTGSGNPSAAVNFVRKRPLREFAATFNASVGSWDYVRGDADISVPITEDGRIRSRLVAAYSQGDSY
VHFLDTRRRTFYGVVSADLTPDTVLTTSVEYQHNHSNGFGSGFPLFYSDGSRTDFNRSVANNAPWARQDTEATTYFVDLT
HRFTNDWKLRAAYSHTDGRYLMKHVYRGGYPDRHTGIIAAPPAFSNYDGNLDRDDIHFSLSAPFEAFGLRHEVALGWMSI
DNHSDIQRYAMVGPAPAIGSFFDWRRAHIQEPSWADTLSPADDVRTKQTGAYLVGRFALAEPLHLIVGDRWSDWKTKQMY
FGSRREYRIKNQFTPYAGLTYDINDTYTAYASYTEIFQPQNARDTSGGILPPIKSKSYELGLKAAYLEGRLNTSAALFQT
RQDNLAQVIPGSSIPGFPNMQASRAASGAKVEGIDLEASGQILPDWNIGASYTHFTTKDASGNPINTNHPRSLFKLYTTY
RLPGALHRLTVGGGVDWQSRMYQAAASPRGNVEVEQDSYALVSLMARFDFNKKLSATLNVNNLFDKKYYDQIGFYSQGWW
GAPRNVMLNLRAQY
>SEQF2266_AEE67703.1 membrane efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGNFVSEILFGYTTLISIINPLGLAFVFLNKTATLTPEERARLAYSVALNAMFLLLVTFFIGAYILHLFGISLEALRVAG
GLSVAVSGWAMLNAPEPHPQAQALQQITPSMAREMVFFPLTMPLTTGPGTVAATIALSANRTNELRDFLLASLASVLITM
AVAATVYLAYSRAGTLARYLGADGTRIVTRVSAFLLLCVGVQIMLTGLEQFLRPIIGHG
>SEQF2266_AEE67704.1 hypothetical protein BPTD_2423 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGRPPLIMNDQRKSSRASCRASANYLRAEAALPRRRYPQPPVSGAATLQELQAQVDTLELENARLRRLALTDDLTGAYN
RRYFATMLRDALRERVRGGGLALCLFDIDNFKTINDRHGHFAGDYLLRRVALAARRCMRRTSDDLCRVGGDEFAAVLSAP
SASAALAQAQRVLDAIRAIAPLDTPHGPRHVTATFGLAWIAPGVSLTWEQAYSDADRALYRAKQAGKNRLHLIASRTAGA
>SEQF2266_AEE67705.1 hypothetical protein BPTD_2424 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MENDPLAIIHIHEDGGATLMGTDYRVEPEGVASMIRQGERFFWIEPPVISQEG
>SEQF2266_AEE67706.1 hypothetical protein BPTD_2425 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPGPRTSPLVFASASIQAIKAGKQRQTRRIVKPQPPPAATLWYCDPAHAERWIAATARPDDATPAQTVSKWLVCPYGKP
GDLIDLAHESGQPFGRAILMGVRIQRLQAINEADAAAEGFAAASRLDEFLPETPPQAAFALAWCERYGARAWAANPWVWV
LEFRLLNQNGH
>SEQF2266_AEE67707.1 virulence protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKWFVAAGIGAAGLMLSSAALARVDIGVSIGIPGVVYPAPVYVAPAPVYAPPPVVHYPAPVYVRPQVVYPAPVYYGGPR
YYKGHRHYDRGHRGHRGHGRGHWRD
>SEQF2266_AEE67708.1 hypothetical protein BPTD_2427 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKCVPAINRAISTAKYRLATRPLHFNKGSCFMTSRMIGDFRVRCTVVQEEGNQYSVQICTRRVGGNAPEKCWTVPGQVS
YQDREDAERTSQQIFERINGVRFNGEPEFAHASA
>SEQF2266_AEE67709.1 seryl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDPILLRKDLQTVVDRLKSRGVDFDIARFNELESRRKAVQTETESQQARRNALAKQIGQLKGKGAPEAEVQAVMAESQA
LPARLKALEDELAQTQAQLNDLLMSVPNLPHASVPQGASSDENVEVRRWLPGAADERGIPAALGFEVRDHVAVGEPLGLD
FDLAARLSGARFSFMRGQMARLHRALAQFMLDLQTGTHGYTECYTPYIVNSSTLFGTGQLPKFKDDMFFVTKGGGDDEPK
VDEQGNPLAREDQYLISTSEITLTSVVRETIVAGADLPLRLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQIAHPE
HSYEALEEMVGHAERVLQLLELPYRVMLLCTGDMGFGSAKTYDLEVWLPAQDTWREISSVSNCETFQARRMQARFRNAQN
KPEYVHTLNGSGLAVGRALVAVLENCQQADGSVRVPAVLQPYMGGLTVLEP
>SEQF2266_AEE67710.1 recombination factor protein RarA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNDLFASDPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFDSGRPHSMIFWGPPGVGKTTLARLMADGFDAQF
IAISAVLGGVKDIRDAVVTAQVAQGQGRRTILFVDEVHRFNKSQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRAR
VYVLQSLSAEELMQLVDRAVAALNEGLEDGQQIRFEAEAREQLAAWADGDARRLISAVEVVAESAQAAGRDSVDAAWLET
SLSQNLRRFDKGGDAFYDQISALHKSVRGSDPDAALYWLARMLDGGADPKYLARRLVRMAIEDIGLADPRATELAVNGAD
IYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNAARKFAAEHGSAPVPLHLRNAPTKLMKQLGHGKAYRYAHDQPHAY
AADEQYFPDGLNPTFYRPTDRGLEAKIQQKLAFLDELDAQERARKR
>SEQF2266_AEE67711.1 outer-membrane lipoprotein carrier protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHMIRRAAGALAVFAVAALAAAPAWAATAQEQLDTFVATVKGATGSFKQSTVSPQGATQPAQSGTFAFQRPGKFKWAVQL
PYEQLIVSDGKQVFQYDPDLAQVTVRQVDQAIGTSPAAILFGAGQLSQAFAVSALPDRDGLQWLRAKPRNADAGFSQVDI
GLRDNQPARIELVDAFGQTTRVELSNLLPGAVPASEFQFTPPQGVDVVKM
>SEQF2266_AEE67712.1 putative cell division protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRMPRISNATPRASRNTRNGPSPFQARISALLREARWILFAALAAWLTLVLATWSPADPGWSHSVSGDAIHNGGGTLGA
YLADILLYLFGFSAWWWVVLLLHRVRAGYRRLASNLRVTSGKQPDALPRVHWEEGIGFVLLLTGSLGIEALRLYSWGMHL
PGGTDGESGAGGVIGQMLAGWLSRGVGFTGGTLALLVLLAVGLSLFFSFSWLQIAERVGSWLEGLVRRVRDSYAAREDRK
VGEVAKAVRTEQVVAKQEKLVHEQPVRIEPAITVVPRSDRAEKEKQQSLFAPPAGESDLPAIGLLDPPLQNQETVSAETI
EFTSRLIEKKLADFGVSVVVVAAQAGPVITRYEIEPATGVKGSQIVNLAKDLARALSLVSIRVVETIPGKNLMGLELPNP
RRQMVKLSEILGSQTYHASHSVLTMALGKDIAGNPVVADLAKMPHLLVAGTTGSGKSVGINAMILSLLYKADASHTRLIL
IDPKMLEMSVYEGIPHLLAPVVTDMRHAANALNWCVGEMEKRYRLMSKMGVRNLAGYNSKIRDAIKREEPIPNPFSLTPD
APEPLQALPHIVVVIDELADLMMVVGKKIEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFQVSSKID
SRTILDQMGAETLLGQGDMLYMPPGTGLPVRVHGAFVHDDEVHRVVEALKAQGEPNYIDGLLEGSEGETGDGLSSVTGMG
DAESDPMYDQACEVVLKHRRASISLVQRHLRIGYNRAARLLEQMEQAGMVSPMQSNGNREILVPAREEA
>SEQF2266_AEE67713.1 thioredoxin reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTPKHAKVLILGSGPAGYTAAVYAARANLSPALITGLAQGGQLMTTTEVDNWPADVQGVQGPDLMQRFLQHAERFNTEI
LFDHIAKVDLSRRPFTLTGDTGNLYTCDALIIATGASAKYLGLASEQAFMGRGVSGCATCDGFFYRNKDVVVIGGGNTAV
EEALYLSNICRKVTLIHRRDKFRAEPILVDKLMDKVANGNMELKLFHTLDEVLGDDSGVTGVRIRSTETDATEDLDVDGC
FVAIGHQPNTGIFEGQLEMKDGYIITKSGLSGMATMTSVPGVFAAGDVQDHVYRQAITSAGTGCMAALDAQRWLENAGQ
>SEQF2266_AEE67714.1 hypothetical protein BPTD_2433 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGNKTGLADLKRLHEQVRETRARAEAAEREAAARASAAAPEADVAAFRRAVQAATPLKPSGRLANRRPDATPATAAAVA
SRRAAALGEAAPRADAGVSDASDIGALLTDGGTAYVRAGVAPDTARNLKRGQWRVGAELDLHGLRVEQARHAVLSFLDEC
LEHGIRCVRIVHGKGYGSQGLEPVLKDKARTWLVQKADVLAFSEAPERGGGAGALLVLLRQAEAGGRP
>SEQF2266_AEE67715.1 putative mebrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSWIHLSMAIVAEIIATSALKSSEGFTRLLPSLVTVAGYAIAFYFLALTLRVIPVGVAYAIWSGVGIVLISLVGALLFK
QHLDLPAIIGIALILAGVVVMNVFSKSVGH
>SEQF2266_AEE67716.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPFTGNTPQEFEQRLRRIYTLYTLGFILLVLLLALAELMGMARSWIGYVFLLVTVSLYACIGIVCRTSDQVEYYVAGRRV
PAFYNGMATAADWMSVASFIGVAGTLYLTGYGGLAYIMGWTGGYVLVALLLAPYLRKFGQYTIPDYLGARYGGKLPRLAG
VFCAILCSFTYLVAQIYGVGIITTRLTGISFELGIFVALGGMLVCSFLGGMRAVTWTQVGQYIILVIAYLVPVVWLSVKH
TGMPVPQLSAGTVLQEITEKEVYLAHDPGERAVRQLWRSRADEMDERLRALPDSLAHEKDRLRGRLAQLNASDAPMVEIR
SLERELASYPATVEEARTLWSQARAAFEARATPPVPHAEPFPAEDPRERENMRINFLALVLCLMLGTAGMPHILMRSYTT
PSVGEARRSVCWSLLFILLLYFMAPALALLVKYEVYTQVVGTSFLSLPSWVHAWSAVDIHLLDVLDVNRDGIVQLGEISM
GADVVVLAMPEIGGLPYVVSGLVAAGGLAAALSTADGLLLTLSNSLSHDTWYRVVSPRMSAGRRVMVSKILLLLVAFGAA
WVAARKPADILFMVSAAFSFAASSFFPALVMGVFWRRANKWGATLGMFAGLAATFAYMAHTHPWLREWVFGVTRAEPVDL
WWGIQPVAAGVFGAPMAFLTIIVVSLLTPRPDSATEALVDYLREPGGR
>SEQF2266_AEE67717.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPESRVKSEPSPAPYWRRNVRLIVLLLACWAGLTFVPAYFARQLAFDFIGWPFSFWMAAYGAPLAYLILIVIYALVMNRF
DARSRTRRDD
>SEQF2266_AEE67718.1 potassium-transporting ATPase subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNADFLGLLLLYLAILLCAAPLLGRHIRQAINGERTWLTAWGQPLERGLYRLAGVDPAAEMDWRRYAVAMLVFNVLGVLA
VYALQRLQGWLPLNPAGLPGVAPDSALNTAISFVTNTNWQGYAGESTMSYLTQMLALTVQNFVSAATGIAVLIALVRGLA
RHSAATLGNFWADLVRATLYVLLPLSFILALALVSQGVVQNLDPYVEAQTVQAQQYETARLDAQGQPMTGPAGQPLTDTV
VTRVQTLPMGPVASQEAIKLLGTNGGGFFNANSAHPYENPNAWSNLLEMLAILLIPAALCWTFGEMVGSRRQGVAILAAM
TVLFAGFAASAAYFEQQPTPALRQAEAALLADGGNLEGKEARFGVAATALFATVTTAASCGAVNGMHDSFSALGGVTPLL
QMQLGEVIYGGVGSGLYGMLAFAILAVFIAGLMIGRTPEYLGKKIEALDMQMVALVILATPALVLAGTAVAVLADAGRAG
VLNPGAHGFSEILYAMSSAANNNGSAFAGLSANTPFYNVLLGLAMWFGRYTIIVAILALAGSLAAKPRLPASVGGMPTTG
PLFVALLVGAVLLVGALTYVPALALGPVAEHLQP
>SEQF2266_AEE67719.1 potassium-transporting ATPase B chain [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANSPTPLSAQAGLPAASPSLPAATPHRAFGLWSRALAGPALRDTLRKLSPAAQLRNPVMFVVYAGSILTTLLWLLALAG
LAEAPAGFILAVAAGLWFTVLFANFAEALAEGRGRQQAAALRGLRTTIEARVLTGFRDSDAAAALPPYWRSRATSRPSGA
LRRDDVVLIEAGETVPGDGQVIAGIASVDKSAITGESAPVIRAAGSDFCSVTGGTRVLSDWIFVRIAADPGDSFLDRMIA
MVESARRQKTPNELALTILLVGLTLVFLLVVASLLPFSMYAVSASGAGQAVSITVLVALLVCLIPTTIGGLLSAIGVAGM
SRMMRANVIATSGRAIEAAGDVSVLLLDKTGTITFGNRQAAAFVPAPGVSPAVLAEAARLASLADETPEGRSIVALAERI
LDTRSEAPAGARFVPFSAQSRMSGVDLDGRLIRKGAADALARWLGEGQGGLPAAVARDVDDVARRGSTPLVVAEGGQALG
VIELKDIVKPGIQPRFAALRRMGIKTVMITGDNALTAAAIAAEAGVDDFLAEATPQAKLELIRACQADGHLVAMTGDGTN
DAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEIVEIGKQMLMTRGALTTFSVANDVAKYFAIIPAAFMAVYPQ
LAQLNVMGLATPASAILSAVIFNALIIVALIPLALKGVRYRPLGAAVLLRRNLLVYGLGGLLAPFAGIKLIDMALAALGW
T
>SEQF2266_AEE67720.1 potassium-transporting ATPase subunit C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTMHPPLPPAGRPLRAALVIFLALSVLVGLLYPLATTGVARLLWPFQAGGSLLEQDGRVVGSALIGQSFTDPRYFWGRPS
ATAPMPYNAAASGGSNLGPANPALAQAVRARIAALRAADPGNPAPIPVDLATASGSGLDPHISPAAAGYQAARVARARGL
PTATVEQLIARHTERPVPDILGEPVVNVLALNLALDRLR
>SEQF2266_AEE67721.1 two component sensor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADPGNDRLDPDRLLQTLEQAQSDARRGRLRIYFGACAGVGKTYAMLAAARAQAAQGVDVVAGLVETHGRADTAALLDTL
PALPLQTLDFQGRRLREFDLQATVARRPRLLLLDELAHTNAPGARHAKRWQDVEELLAAGIDVWTTLNVQHLESLNEAVG
GITGVRVRETVPDSVFDAADEIILVDLSADELLRRLREGRVYVPEQARHASRHFFRKGNLIALRELALRRTAEHVDDDVR
AYRHERAIEPVWRTREAVVACIDADPHAEHVLRSAHRLAQQLDCEWHAITIEAPRVAPLPRAGRARLDQALALAETLGAH
VETVAGTDMVDAATRYMRRHNITKAVVGRDAWRRRGLSGLLDAALTPGRLLRRRSFADVLASACPEADIVRVGAPSAATA
APRRDPRSWRNASAPAGHAAAGAYLWALAYCAAATLASRLAFPVLHQTNIVMIFLLAVVAAALRHGRGPAALASVVSVAL
FDFFFVQPLASFAVSDVQYLLTFAVLLTVGLLIGQLTAGLRQQARAAARREADARGLYEFARELSAALQPEQIAGAASAF
LNAAFGARGALYILGLDDRLRLAPGAGDAALEPTLAQWAFDHGQACGAGTDTLSNSPVLYLPLRAPMRVRGVLALHHAGP
PLYSAAPARRQLDAYATLIAIAIERLHYVEVAQQALLSIESERLRNALLAAVSHDLRTPLTSLLGMAETLQRSPAAMTPA
ALETVAAMQDQARRMHALVVNLLDMARLQSHDAPLRRQWQSVEELVGSALAAMNAALQDRPVTVAPLSALPLVKCDGILI
ERVLCNLLENAAKYTPPGSAIHIDALADAHTLQVRVADDGAGVAQADRQRIFEKFARGQRESAPPPAQASGWRYAAPSWT
PTRAASGSSRPGACAAPASSSRCR
>SEQF2266_AEE67722.1 two component system transcriptional regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDYRPTVLIVEDDAHIRRFVRSALEAEGCEVHETDTVRRGLIEAGTRQPDAVVLDLGLPDEDGMALLRELRGWTELPVL
VLSARSSEGDKIAALDAGADDYLTKPFGVGELLARLRVLLRRHARGGAGNAAQAGFGDVQIDLARRVVTRAGEHVHLTQI
EYRLLAALVASRGKVMTHRELLREVWGPSHVESHHYLRIYMGHLRQKLEADPARPRYLLTEIGVGYRYAGE
>SEQF2266_AEE67723.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67724.1 hypothetical protein BPTD_2443 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVVQLKIFAVLALLIPALALVSKGGGVAVFYTLAVLTSLAIMVYAGRGRAQPSWRDLAWPGAVLAVPLLSMLVTNAYLG
IWSGSEFEKLLRFALALPLFWVLLCVPRPWLQQIQWSLLFSAYAGAIMLYVIVGWYGGRMQVSFYGAEYNAVAFANLTLF
FGFASLLTLGWRLTPWPGLEALLKVGAACAAVYAAHVSETRSSWMLLPVFGLVFLMSRRVWSLRRKLAVGLVLVAALAVL
AGVMLSSQGNRMHKILTDLQRYTVQNDRNTSVGIRLQLWHASWMIFQEAPVLGVGPRNFRAELAKLRDQGVVTPEVASGY
GEPHNDFMAAMAGYGLLGLLSILLLYLAPAWVFLRRMASDDRVIRTGAQIGLLFCLGYCAFSLTEMMFRNMRSVPIYSAT
LVLLLALTAPRAA
>SEQF2266_AEE67725.1 hypothetical protein BPTD_2444 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARTIENMAKPASDMPPYDKAAALRGLAGARRVALLMAPRLGDTLLMMNMARNLAAHGREVSIFGDYIHGLRDWFPGLDI
RPSLSEEQAGQVLPGYDCAAQMHVGWPYALHAHQPNYFYYDAHVAITGRGFVKLFQIRDFCREQLGLAQAGADNGLRPPP
QVQPHRSHPRRVALHPTSTGAQRCWAPRHFKELGLRLLHEGYEPNYIVAPHERAEWSWVLDHGLHLPQFPSLSEVAGFIH
ASGWFIGNESGIGHLASNVGVPTLSLTGRPTRTRAWRPAWSTSRIVYPALIPGGRWRDRLWREWLSPRRVMSAFHKLQAD
DRRQPVGVPWGKI
>SEQF2266_AEE67726.1 isocitrate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSYQHIKVPTGGQKITVNADYSLNVPDQVIIPVIEGDGTGADITPVMIKVVDAAVQKAYAGKRKIHWMEVYAGEKATKVY
GPDVWLPEETLDAVKDYVVSIKGPLTTPVGGGIRSLNVALRQQLDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSED
IYAGIEYMAESEQAKDLIQYLQTKLGVTKIRFPNTSSIGIKPVSREGTERLVRKALQYAIDNDRASVTLVHKGNIMKFTE
GGFRDWGYALAQNEFGAQPIDGGPWCKFKNPKTGREIIVKDSIADAFLQQILLRPAEYDVIATLNLNGDYISDALAAQVG
GIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWTEAADLIIASMEKSILSKKVTYDFARLLE
GATQVSCSGFGQVMIDNM
>SEQF2266_AEE67727.1 hypothetical protein BPTD_2446 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFNPSRDQVREFFIETWRKHRATEVLTPLESMALDWILEHPEYHGDLESPEAMTAEYPVEHGRTNPFLHLSMHLAIAEQL
SIDHPRGIRAAYQRLVGRGDAHQAAHEIMECLGQVVWEAQRLGTPLDSDAYIELIRQRAER
>SEQF2266_AEE67728.1 putative cytochrome [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRFTFALAGIVLATAGVSAQAQDVVAGKAVFDKFNCASCHGADAKTSVQPEYPVLAGQHADYLAHALKAYKRGAAGSAA
TANVRKNPIMGAFAAQLSDQDIRNVAAWLAAQPSDLGVRQ
>SEQF2266_AEE67729.1 putative cytochrome [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRTVSVLAVLASCAIAGPAAAADAAPVGNAQNARDKVSMCIGCHGIPGYKASFPELYHVPMIAGQNAKYIEAALNEYRK
GARSHPTMDAVAGSLSDQDIADLAAYYSSLK
>SEQF2266_AEE67730.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67731.1 putative ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTSASSSSAPAQSARFEGTDRYVATDDLKLAVNAALTLQRPLLIKGEPGTGKTMLAEEVARALDRPLLQWHIKSTTKAH
QGLYEYDAVSRLRDSQLGDEKVRDIRNYIVQGTLWQAFEAPEPVVLLIDEIDKADIEFPNDLLRELDRMEFHVYETRQTV
QARHRPLVIITSNNEKDLPDAFLRRCFFHYIRFPDRDTMRDIVGVHYPDIRQDVLRAALDTFFALREAPGLKKKPSTSEL
LDWLRLLLAEAIPAAEIDAHAATAVPVLAGALLKNEQDVHLLERLGAMARGAQRR
>SEQF2266_AEE67732.1 hypothetical protein BPTD_2451 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIDFFYHLRAHKLPVSVQEYLTLLEALRQRLMAPTLDDFYFLARTALVKDESLYDRYDAAFGAYYRGIAAALPADRDIP
LDWLIKEFEKTLTPEEKAAIEAHGWDKLMELFKQRLEEQQERHAGGSKWIGTGGTSPFGNGGYHLEGIRVGGDSAGNRTA
VKVWDMRQFRDYDDQLELGTRNFKVALRRLRRFARQGADLELDLDDTIASTARNAGHLDLRLVPERRNTVKVLMLLNVGG
SMDDHIARVEELFSAARSEFRHLDVYYFHNCPYENLWQNNRRRQNERFETWDVLRKYNADWRLIIVGDATMSPYKILQPG
GSVEHYNKEAGAVWLRRLLDAWPKAAWLNPEPTASWRYRQSIALLRDIMQDRMYPVTVAGLEQAMRQLSK
>SEQF2266_AEE67733.1 hypothetical protein BPTD_2452 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNATPSPAPLVDCTHDRHAAAILDIFNDAILTSTALYDYQPRALASMEAWFQAKRQGGFPVVGFEDAAGVLMGFASYGTF
RAWPAYKYSVEHSVYVDRRYRGRGLGEALLRALIERARLQQVHVLVGGIDATNAGSVALHRKLGFVHAGTITQAGFKFGR
WLDLAFYQLTLDTSLRPVDG
>SEQF2266_AEE67734.1 hypothetical protein BPTD_2453 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTDIVTRALSQLLGNSLSGDVIKGRFRYAYASDDGRFVAILGHDLTTYVVDVDAQRYFAECAGVPCGFAGHVLEMEGAQ
EHGHPWPAVNDLFDLDMDGDEIAWRRCPGAVALAATRQAQSRVA
>SEQF2266_AEE67735.1 putative zinc protease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLPLLSRRLNALLVSSFLAFQAGAASLPAGVSEVSSIEGITEYRLANGLRVLLAPDASKPTTTVNMTYLVGSRNENYGQ
TGMAHLLEHMLFKGTPAIRNALGEFSRRGLQANGSTSSDRTNYFASFAANPETLKWYLGWQADAMVNSLIAKEDLDSEMT
VVRNEMESGENNPFRVLMQKMQAAAYQWHNYGKSTIGARSDVENVDIAQLRAFYHEYYQPDNAVLIVAGKFDPQTALADI
QSSLGKLPKPKRTLPPEYTVEPVQDGERSVTLRRAGGTPLVAAMYHLPAAGSPDFVGLDLAATILADTPSSRLYHALVPT
KLASGVFGFTMDQLDPGLAMFGAQLQPGMDQDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVAL
SEAIASGDWRLFFLQRDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPTEKPQRAPLAQRADLAAVFKDYKGDPNFKAVEA
FDPSPANIDKRTLRRTLDLPNGQVELALLPKATRGDRVQAELLIQFGDAEALRGQRVPLAAAAALLDRGTDKLSRQAIQD
RLDQLQAEATINGSGTNLVVNISTLGKNLPDVMALVLDVVRNASFPQDQVEEYKRQAITMVQDAMTDPTALASRALARHN
NPWPADDVRYVPTFDEALEQLRSLSRDDLAAVSGKLYGAGRIKFSAVGEFDPAAVEAVLRKGLDGWRSAPAYTRLPDPYR
AVPAQQFDIATPDKANAFYISRMPLQLQDTNADYPALYLANFLLGTSETSRLWHRVRETEGLSYNVRSNLSVSSYEPSAN
WTIYAIYAPQNRARLEKAISEELARALKDGFTDQEVRDGVVALLNYRNLARAQDDVLADTWVNYMQTGRSFQWSADMDRK
LEALTPDQVNAALRKYLKPEAFSTAVAGDFTKKSTP
>SEQF2266_AEE67736.1 molecular chaperone [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKRDYYEVLGVAKNASDEDLKKAYRKLAMKYHPDRNPDSKEAEEKFKEAKEAYEVLGDEQKRAAYDRYGHAGVDPNAAG
MGGGMGGGMGGGFADAFGDIFGEIFGAGRRGGGGPQVYRGADLKYALEITLEQAASGFDTEIRVPSWENCDTCHGSGAKA
GTSPKTCRTCGGSGAVRMQQGFFSVQQTCPTCHGTGKEITDPCPSCDGVGRTRRNKTLQVKIPAGIDDGMRIRSSGNGEP
GINGGPPGDLYVEIHIKQHKIFQRDGDDLHCELTIPFTTAALGGELQVPTLGGKAEISIPEGTQSGKTFRLRAKGIRGVR
GSYPGDLYCHVVVETPVRLSDEQKAILRQFEASLNDGGDRHSPQSKSWTDRVKEFFS
>SEQF2266_AEE67737.1 molecular chaperone DnaK [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKIIGIDLGTTNSCVAVLDGGQVKIIENAEGARTTPSIVAYMDDGETLVGAPAKRQAVANPKNTLYAVKRLIGRKFDEK
AVQKDIDLMPYSIVKADNGDAWVEVRGKKLAPPQVSAEVLRKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRI
AGLEVKRIINEPTAAALAFGLDKTEKGDRKIVVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDY
IISEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLKITRAKLEALVEELIERTIEP
CRVAIKDAGVKVSDIDDVILVGGMTRMPKVQDKVKEFFGREPRKDVNPDEAVAAGAAIQGSVLSGERKDVLLLDVTPLSL
GIETLGGVMTKMIQKNTTIPTRYSQTFSTADDNQPAVTIKVFQGEREIAAGNKGLGEFNLEGIPPAPRGLPQIEVTFDID
ANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMVKDAEANAEEDHRLAELAQARNQADALVHATRKSLTEYGEKLEA
AEKESIEAAIKDLEDILKTGDKAEIDAKVEALSTASQKLGEKMYADMQAQQQAQQQQAADNAKPVDDNVVDADFKEVKRD
Q
>SEQF2266_AEE67738.1 putative thioredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAAPFDPAEVFQVFGMRRVDSASFDEQVVRAPGDDLRCVFLWGQDCYNCGIFKQTALLQRQALLALELSWFEADVYADE
ALGRRFSLHGVPTFVLYRSGKRLGRVTGWPGLPQFSAAMQRLRDGT
>SEQF2266_AEE67739.1 putative GrpE chaperone [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPQEPVDSTPESGENAATPGLEDDLSAELAALRAELEAAQATVKAQQEQVLRAAAEAENVRRRAQEDVAKARKFGIES
FAESLVPVKDSLEAALAQPDQAAQAWREGVEVTLKQLTAAFERNLLKEIAPAQGDKFDPHLHQAISSVPADQPANTVLQL
LQKGYVIADRTLRPALVVVSAGQG
>SEQF2266_AEE67740.1 hypothetical protein BPTD_2459 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPPRKPTIGTSGPPGHANLEEDQLERELDEALLETFPASDPIAITSEDERDEPDDKVDEALEDTFPASDPPAPAQPGKK
>SEQF2266_AEE67741.1 phosphoribosylaminoimidazole-succinocarboxamide synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGVFVFLRLFKYLWPERYLPETPAQDPFDENPPPCGPGRVGVLLVNLGTPDEPTRGAIRRYLGEFLSDPRVIEIPRYLW
MPILHGLVLTMRPKKLAPRYAGIWMEEGSPLLVYSQRQAAGVRQGLAARGVHAEVELAMRYGKPSIPAAITALRERGCDH
ILAVPLYPQYAASTTATVVDAVTRHAGRLRDQPALRFVKRFHNDPAYVEAQAGRIAEFWQAHGRPQKLVMSFHGLPRYSI
ELGDPYYRDCLDTARLLRERLGLREDEVEVTFQSRFGSARWLEPYTEPTLAELARQGVTEVDVVCPGFVADCLETLEEIS
QECRDAFVAAGGRQFRYIPALNDCPPWIEGLTDLVERQLRGWPTGNP
>SEQF2266_AEE67742.1 heat-inducible transcription repressor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDDRARALLKALIERYIADGQPVGSRTLSKVFDLSPATIRNVMADLEELGLIHSPHTSAGRVPTPRGYRMFVDSLLAVRA
YQFEPAHIGELLPVSEPSRAVNAAAALLSNLTQFAGVVLTPKRTQIFRQIEFIRLSDKRVLLIIVTPEGDVQNRILSAQR
DYTEAELLEAGNFFNVHFSGKSFDAVRRTLSTELAQLRDDISRLMQAAVEAGAEAADDGEAVVISGERKLLDVTDIASDM
DRLRKMFSLFEKKTDLLQLLDVSSRAQGVQIYIGGDSQLVPMEEVSVITAPYGVDGKVIGTLGVIGPTRMAYERVIPIVD
ITARLLSNALSHNQ
>SEQF2266_AEE67743.1 NAD(+)/NADH kinase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYFPIVALIGRYQDTGLDAPLTALAQMLTQAGRRVLVEAETARNAGVSGYPVADWDEIGRTATLAVVMGGDGTVLGAARH
LAPYGVPLIGINHGRLGFITDIPLQDAHDALGRVLEGNYQAEDRMLLQGGVWRGEQQMYSASAVNDVVLNRAGRGGMIEV
RVELDGAFMYTQRADGLIIATPTGSTAYSLSANGPILHPGMNAMVLVPVAPQTLSNRPIVIPDSGVLNMTLTAMGRVEIG
ASVHFDMQTWSDLQPGDRITVQRAPHIIRFVHPEGYSFFSTLRRKLHWNLMPQATDNLE
>SEQF2266_AEE67744.1 DNA repair protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRTLHIRDFVIVEQTELHFGDGFTVFSGETGAGKSILIDALALTLGERGDASMLREGAARADITAVFDAPPALRDWLAE
RELDSGDELALRRVIDSQGRSRAYINGMPATIAQLRELGDGLVDIHGQHAHQSLMRPEAQRDLLDAHGGHAELRQTVAQA
WKQWRALARQLDTAEQDAEALAAERDRLQWQSDELDRLGLGPDEWDALQTEHTRLSHAQSLLDGASRILEALDGEHDSAQ
HRLNGAAHQLQQMLRHDPALQGIGDELESARIAITEAVSDLNNYVSRVELDPQRLADVEARLSAVFETARKFKCEPHDLP
ALRDSLHGKLAEMQAASDVQALRAQAEAAQARYEAAAARLSAARRKIAKDLGKQVTQAMQTLSMQGGRFEAALTGGAPSA
HGSEQVEFLVAGHAGSTPRPLAKVASGGELSRISLALSVIASRAARVPTLIFDEVDSGVGGAVAEAVGKLLRELGQRHQV
LCVTHLPQVAACAHAQYRVSKVESGGSTRSRIAELDAEARVEEVARMLGGIKITATTRDHAREMLGGHTAPAA
>SEQF2266_AEE67745.1 ferric ion uptake regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDQSELKNMGLKATFPRLKILDIFRKSDLRHLSAEDVYRALIAENVEIGLATVYRVLTQFEQAGILTRSQFDTGKAVFE
LNDGDHHDHLICTNCGTVFEFSDPDIEKRQYKVAKDNGFVLESHAMVLYGICGNCQKGR
>SEQF2266_AEE67746.1 outer membrane lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIARISLRPLKGLAVAVLAASALTACSSGKWGFPYKAGVQQGNWITKEQVALLQQGMSREQVRFALGSPTLTSVLHADRW
DYPYYFKPGYGKAQERQFTVWFENDHLVRWSGDEQPDLQPFQIEKVNAKQEEKADAQVDTAEKRQEGIDKAEKVRPHVDV
TTPDNPTLDYPGEPGQTFEPLK
>SEQF2266_AEE67747.1 dihydrodipicolinate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQATPQRIAIAGASGRMGQMLIEAVLDTEGVELAVALDRAGSPSIGQDAGAALGRPCGVTITDQLDALAQADCLIDFTR
PEGTLQHLQACLRHDVKMVIGTTGFDSSGRAEIKVAAQKIAIVFAPNMSVGVNATLKLLDMAARILNSGYDVEIFEAHHR
NKVDAPSGTALIMGETVASAWDVALPDVATWTRHGDTGVRKPGTIGFSVVRGGDIVGDHTVFFCGTGERIEISHRSSSRA
TYAQGAVRAARFLARQDNGLYDMQAVLGL
>SEQF2266_AEE67748.1 UDP-N-acetylenolpyruvoylglucosamine reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTVPARIEPVAPLAPQAQDLRCFNTLGLASHAPAFVALTEPSQLPALSALAPRFRQLVVLGGGSNVVLPASIDGLVAQV
RLPGVRLVGQCADAWVVEAAAGENWHGFVTACVDNGWDGLENLALIPGTVGAAPVQNIGAYGVELADRFHSLTAWDVKGG
RWVEMGAAECRFAYRDSFFKHQEPGAWVIGSVRFALPRPWQPVLDYPDLQRHAALDGAAPTARAVYDAVCAIRRAKLPDP
AVVGNAGSFFKNPLVDAGTRQALLGRFPGLVSYPQPDGRYKLAAGWLIDQCGWKGRQLGAAGVHDRQALVLVNRGGAQAR
DIMALAAAIQGDVERRYGVRLEPEPVVVPAR
>SEQF2266_AEE67749.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPHMQLGDVQIHYDVVGDGPPLVMTTGLGTGPQSRQEMIAQLAREYSVVTYHQRGTGKSSPGPQGQAIEALADDIVALMD
HLKFERVRLIGLSTGTGKVTVVAARHPGRVEKLVLAAPWTHGDDLLDLIQHVRMAAADGMPAELYAQFNAVLLYPPRYRR
EHASRFAAAAADAAGIKTDAAGLRARLEAILRFDARPLYPLISSSTLVMAARDDLVMPAWFAQSAAASISDARLIVLGEG
GHMFPETRTEEFLSLVLPFLRRA
>SEQF2266_AEE67750.1 hypothetical protein BPTD_2469 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQDTAPGQDLRIGEALADWIARRAHPIGLGTLARARWAVVDLLGCAIAGRRDASVTALTRCAKYLGTGDISALGTAYCYP
APVAALIGGTSAHVLDYDDTGATSIAHVSAVAVPAILALAEQEHRSLDTVLEAFVVGFEVTTRVGRMLNPEHYAAGWYAT
ATAGLLGATAACARLLKLDARQTLAALSIATNLAGGSRRQIGSTMKATQAGIAAKNAVLAVRLAQAGIEGSQEPFLGEGG
WLSLMAARHGPGAGAAALEGLGSDYALDAPELIQKFFPCCASAHKTLDAIAQLMASGELDARNVDRIDTWLTPVQRRNLR
FDQPVGAMQARFSLPYCAARLLHGGSLRLGDFTPQRVADPQLAGIMARVCLHVQDVPQGQAISSGTEMTAALRTRVTLCD
GTILERVVGAPKGSADNPMTQAERVAKFVDCCGYAGLAVDGGNVLARIDVMFDSNVIAPMLLRYLSGLLADAGSSHLD
>SEQF2266_AEE67751.1 hypothetical protein BPTD_2470 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSKNRKLFLSGAIGLTALLSFGRSQAADDYPTKPIRIVVSYAPGGGTDVAARIFATQLSSRIGQSVIVENRPGATGRIG
TTSVAQAAPDGYTLLFGTAAELTIASVTAKSLPYRPAEDFVPISLVGWLPNMLVASAKFPPNSVKELIAYAKARPGAVNY
GSGGNYSQPHLIGLRFNIAAGIDTVHVPYKGSGPMITDLAENQIQYSFSSPQPMVDLIGAGKLKALAVLSDKRLDSMPDL
PTMSESGLPGFVDSNWLALMAPRGTPPAVVEKLHRASVESLQAPALLESWKRLYIVPFGSSPQQLAQFIASETEKYRDLA
RKINLQPE
>SEQF2266_AEE67752.1 putative formyltetrahydrofolate deformylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQYVLLLKCLDRPGIVHEISGGLFQEGCNIEESAQFSESGTAVFYMRVRFSAPDRACVQKIATALKRLYNGDEAGLAIH
DMDKRSRVLILVSKHGHCLNDLLFRQRSGLLNMDVAGVVSNHPDFRELAASYDIPFHHFPVTPQTRAEQEGRILDLVAST
QSDLVVLARYMQILSDRASNALSGRAINIHHSFLPGFKGARPYYQAYDRGVKLIGATAHYVTSELDEGPIIEQDVARVSH
SLEPQALTDVGRDVECMTLARAVKWHTEHRIILNGRKTIVFA
>SEQF2266_AEE67753.1 sarcosine oxidase gamma subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHFGSASAIPQVTSPAAIKLGAQGLVLTEMAVASIQLSGFGSGSALAAWMASALKVAPQPNTFVSVAEGRVDIAAIAPAT
WLMSGVAADLDSIVASARVELEEVAAITELSDGRNVFLQLEGEPAATVLSKYIDIDFEGGALAPGRCASTGIHDTAVLVI
CRRPDLFQIVVHRSLAPSLAETLVDGAAEFGVNVERLGE
>SEQF2266_AEE67754.1 sarcosine oxidase alpha subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQQYRLNHGGLVDRRRPLTFRFDGIQYQGYHGDTLASALLANGVHLVGRSFKYHRPRGIYTAGVEEMNALVDVLKEGQA
DPNTRATVVELEDGIEVSSQNRWPSLRFDVRSFHGMISRLIPAGFYYKTFMWPAKFWPKYEHMIRQAAGLGRAPLVRDRD
RYEKQHAYCDVLVVGAGPAGLAAARSACQAGLRVLLVDEKSRVGGTLPGSNTEIEGVAGAKWATAVERELRESGHASVML
RTTAFGYYDHDTVALAQQCDTPTNPHGATQRLWYVHAKQVVLAAGAIERPCVFANNDLPGVMLASAARTYCNEFGVAVGR
RVLVLANNDSAYEAALDLKRAGIDIVGVVDQREAVSASLSETLASLRIPHHRGSTIKKATGRHRVRCAVIVDQSGLRQTV
RCDTILVSGGWTPSVHLHSQSGGKVGYDADLSTFVPTSTKQHSLSIGACAGRLQLSECLADGASICAQMDGEAQGRGHPA
TPPKAEKLVIPPPHLGYRAGKRFIDIQDDVTVEDIELAARENFRSVEHLKRYTTLGMGTDQGKTSNVNGLTIMGALRSES
PGAVGTTTFRPPYTPIRLGLLSGRHIDKHFSAVRVSPMHEWHVRNGAVMGPANLWLRPKAYLRGNESYAQAWQRECRNVR
QDVGIVDVSTLGKIEVQGPDAGVFLDRVYANRISTLKVGKARYGVLLREDGIVFDDGTIARWGERLFILSTTTANAAAVM
SHFEFLLATAWPTLRVRVTSVTDHYAQIALAGPKSREVLERLQISADVTDSALPHMAVCETVWNGLKLLIYRVSFSGERA
YELAIAAAYGQRLWDQLLAVGAPFSIMPYGTEAMGALRIEKGHPAGPELDGRTTAADLGLGGLVKKEGAFVGKALLGREG
LQAADRPTLVGLRSKSGAAIQSGSMLVLRAEVGAQELGWVASATYSPTLGQHIALGFLVNGANALGRSVLAWSALTSSQV
EVEVVNPCFVDIERERLLG
>SEQF2266_AEE67755.1 sarcosine oxidase delta subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRLDCPFCGVRSHTEFSYLGDATKTRPADDAPIESWLDFVYIRRNPKGRHEEYWQHVLGCRAWVRVTRDTLTHAIENVD
LTAPIEEPAK
>SEQF2266_AEE67756.1 sarcosine oxidase beta subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRYSFPNLVRNSLSGHRRWPKAWRDPDPKPHYDVIVVGGGGHGLATAYYLAKNHGIRKVAVIEKGWLGGGNTGRNTTLIR
SNYLLAGNSRFYEWSMKLWETMSQELNYNVMFSQRGVLNLAHNDAQRDAFMRRGNAMRLNGIDAQWLTREQIERRVPLLD
CGPGARYPVEGGLLQPRGGVARHDAVAWGYARAADSLGVDIIQNCECTGIDIRNGKVVGIVTSRGRIAADRVGIVVAGHT
SQLAQMAGIDLPIESHVLQAFVSEPVKPVLDTVVTYGAGHFYVSQSDKGELVMGGDLDFYNSYSQRGNLPILQHAVECAM
QMFPFISRLRMMRHWGGVMDMTMDGSPIISKTPVDNFYINGGWCYGGFKATPASGWVFAHTMANDTPHELNECFDMRRFE
SGRLLNEKGAGPRPNLH
>SEQF2266_AEE67757.1 putative dipeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHKKIVVPSATDMATRFTQDSFVFDCLSMYYVIDDPWAENCLAAGVNATNVTFGTEQPWDIVLRDFDSGLEKIERSPYLA
LATNRQEIDAANKQGKLAVIIGTQGSAMVDLEFHRLRTMHRLGMRYFGLAYTGPTMFADGCGESRNAGLSFAGIELIDAC
NDLGLILDLSHVGHRSREEAVARSRFPVYTHSNSYALNPNDRNTTDETARAIRAKGGIMGICGLPKTVHPENATLNELLD
HADHWVKTIDAAHVGFGLDFVEAYKSDRSTMPAASRLWRTRRPDIFGTVEEFHLQDYPLGIASIKQLPNLTQGLFDRGYA
EKEVAGIIGGNWLRHFTEVYG
>SEQF2266_AEE67758.1 LysR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPKIIDMQALRIFLAAAKDQNMSIAASKLGLTQSAVSQAIGQLEEQFGIKLLDRNRRPLTLTSAGYVLYERGEQLVSA
ALNLKGAVLEAGHGVRPAIRLGLVDSVATTCGTSIIKQLMPRVAQLKLQTGLSFDVGAALIDRRVDLAITSEPMHRENGL
VRYRVLTEQFVVIFPPGLEVADRENTNLALLSAQLPMIRYRSQSHLGRQAETVLRRADLEIPQFLEVDTADTLTSMVAGG
LGWALTTPLCLLQAQEHAKRVGIGFLQSSGDSRSIYLLARGGEFDSLIKDTFDITVSVLKEECLARLAYIHPSLDRHAMM
GEWPGIAGHSKTTGARRQPDISSEGIE
>SEQF2266_AEE67759.1 putative dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTANPGKDTESRTIAFDDLKMLLASIFEKNGTSATVAHILADTVARADRDGARSHGLFRVPGYVDSLKSGYVDGHAEPVI
DAVAGGFLRVDARNGFAQPALAAARALLMERASKNGIALAAIRNSHHFGALWLDVEPFAEAGFIAITTVNAVARMAPFGG
NTPVYGTNPLAFAAPRKGHSPLVFDLATSAVAFGEIRLAAQHGESLPQGYGLDAQGQPTTSPEAIIAGGSLLPFGAHKGS
ALAMMVELLSAALTDGAFSSEIDQSSHPGAQTSRAGQTVILIDASKSAGGDFSDRTQLLCEMLNAAGQTRLPSDRRYANR
AASERDGMHIDEKTYRTLSALM
>SEQF2266_AEE67760.1 FolD bifunctional protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHGRRFKKMKAKVIDGSRASARIREQLKERVACLRARNIRPGLAVLLVGEDPASQVYVRNKVAACEQVGIHSVTERYPSA
WTENQLLDRIASLHGDPAINGILVQLPLPPHMSAHRVIEAISPLKDVDGFHISNAGLLMTGKPQFQPCTPYGVMKLLESE
GVSLRGAEAVIVGASNIVGKPMAMLLLAAGATVTICNSKTRDLAGQARRADVLIVAAGRAGIVDGSMIKPGAVVIDVGIN
RSPDGRLCGDVDYGSAAKVAGAITPVPGGVGPMTIAMLLANTVEAAERSAI
>SEQF2266_AEE67761.1 hypothetical protein BPTD_2480 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRIFAAVAFMISAFVHAASPYPEKSITIVNPFGAGTASDTVIRALGNRLGSALNVPVVVENRPGANGIVGTLRGVRAPN
DGYTIFVTTGTTVSQNSWLFKDINYDPMTDFVGIAVLGGFPLSIVVPPQSPYRDFKELMQAIHTSTQGITYATAYGMQTV
CGELLGKAAKGKVLGIPYKSTPPAVLDVTAGRVAFACGETATTLSALQGRTLRALAVINPGGSKYIPGVPSVQESLPDFP
IMQSWIGLAAPRGIDSKKVELLSREIYKIASDPAFADSLSGLGYASTPMDAAATAQFMKSDFSRWRDLIKHVGIQPQ
>SEQF2266_AEE67762.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHR
>SEQF2266_AEE67763.1 hypothetical protein BPTD_2483 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIWLAMGMAMAAAAWLAWRVLAWSGPAARRYRAVYTQQAGAHLSEVFLFVDPAQLWAAALAMAAAGGAGAWVFSGSAWLA
AVAAVALLRLPHLLLGAARRRRLRQLERQLPGALVAMACALRAGAGIAAALRQLVEHGEAPLAQEFGLLLREQRMGVSFD
AALARLARRASFESMALVAAALRVAAHTGGNLAETLEGIAQTVSARLQLQDRVRALCAQGRMQAWIVGALPPVLMGVLGR
LQPEAMAALWHTLYGWAALALIVVLEGTGIWLIRRIVAIDV
>SEQF2266_AEE67764.1 putative secretory apparatus [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMRSRLPLHARGWLPWMAVLLAGGTMLWTPGGRAAPPAQPAVLRMEVGETQVLAAAGVTRVAVGNGQVLSATVVDGAEV
ALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLREEVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQR
YPEVLDFTGRVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAALAPPPGPLAGAAAVRHAGGLLG
VNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYRTTDKEGNGTTLFKPYGVSLQITPRIDADGAVHARI
EVEASSVDPTLALAAGPALRKRRAVTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAI
FVTPTIVSPSDSFLQRRALLGQMQLDQAFPEAPRLGTGAAADQSADWSRPGGAGSQWRRPLWADAQEGAP
>SEQF2266_AEE67765.1 putative secretory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAALDLEAGTPLHDELVAVRDMPQAWL
PAGALLPDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFT
HRQRQLTMPLLAGSKVLALDPADAQGGASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFAAPSAREAGD
LPALLGMPRDAAPRAAVPVLYGDRLDAPAGALPGDSEAAMP
>SEQF2266_AEE67766.1 hypothetical protein BPTD_2487 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPAHLAASASTWLHLPPGVVAAALAGQIQMFGVPAEVRVFHAPQGIDALLAHFATRHAELRDLTVLPGLAVLAGGAGDC
THTISLAPQFGGVEGVAARLCWPRGLPSRQPLADVLLPPHARLRLDVATRDGPVSVAQQVWHWRAAGPTVTARWAVRREA
RLRASGWRLQGAAGPACRCGAPQTWLRAGPQGRERLSLQPALHANGCGMRLLHIGGAP
>SEQF2266_AEE67767.1 hypothetical protein BPTD_2489 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPTRAAVTRQAGQALALGLALMALAGMAWLALYGLGQRAGARAQLLRATDAAAYSGAVVQARALNLLAYIHRAQVGHQV
ALAHLASLAAWARFAQTQAARRTAQNPPVALIGLLFGPRAARGYGAAQDAPAGDLMQAYAAHDELAHRVLQQAADTLARD
ARATRDATMRAVLRAHYPQGDDGLTLEVLRDDWPGYLRRVTGTGARGLRGWAQRAAGYFDFLQPRDFTREGNWIVSPRCP
TRRHELRRRGVTWLDRDGRWGASDTLSFHAVRSNRWIGCYFREYAMGWGLAADSGATRAGPHVLRAPEDFSQQDFWRWVH
RHTSWNLLGGRHNPLALSYAASRRLSPGGRGLPAVYEPASSSEAAVGFEIRTQRREEGIVLSARAAGQSHFSLPPGTSVA
RGRPDVLFLPYWQARRAAADAALPMGVRRTVRGPESRP
>SEQF2266_AEE67768.1 integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVKQRQLGQGMTEYIIVVALVAVAAIAVYQLFGQVVRSQTAAMARELAGEDGSAQARAAQSAAGRAASQTRARSLKSFT
GNAQGAK
>SEQF2266_AEE67769.1 entericidin B-like bacteriolytic toxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSKIVLTAFVVFGFVLQGCNTVAGMGKDMSDAGSAITHAAEK
>SEQF2266_AEE67770.1 hypothetical protein BPTD_2492 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDYVFPPSPPAAVPVAGGNARFPVRRVYCVGRNYAEHAKEMGFTGREDPFFFCKPADAILSVGDGATGEMPYPPKTANLH
YEMELVVVLGKGGRDLTVEQADECVWGYALGLDMTRRDLQGEAKKQGRPWEVGKAFDLSAPLGPIHPRSAVGTLDKGAIW
LDVNGERKQSSDISQMIWNIPESIAYLSGLFELQPGDIIFTGTPEGVGAVVKGDVIVGGVEGLGELRVRIA
>SEQF2266_AEE67771.1 inorganic pyrophosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLDRVAPGKKLPDDFNVIIEIPMNADPVKYEVDKESGAIFVDRFMLTAMHYPCNYGYIPQTLSKDGDPADVLVLTPFPI
QIGAVVRCRAIGVLEMDDESGGDAKLLAVPIEKLYPPYRNIKSYEDLPAEDVSRIQHFFEHYKDLEKGKWVKVKGWKGVD
AAHEEIVRSAERYAKGQA
>SEQF2266_AEE67772.1 hypothetical protein BPTD_2494 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTWFWTLLLAVVAVALAVVLRAHAGNVLLLVWPWRIELSLTLTVLLLVAAFVTLYVGLRLLAWLVAIPDRLRAWRGRRA
QERDHELLERGWIGLLEGRFAQAEKDLSKLFDQTKVRSSRVLAALSGARAAHNLGEYERRDRMLESAREQAGEDAGLQEA
TATVSADMLLDQGRAQQALDLLEPLQDGGARHLHTMRLLLRAETALQHHERVFMLARGLLRRNAIGKAEAEQLIDSAGAA
RLRAGMAVDQWRPIWKDLKSDERLLPNIALAGAAAFEDAGEANEAARILEAAVAVKFNPALVAAYARCDAAQVPHRLAKA
ETWLQQRPADTDLLTALGLLCLNGQLWRQAERYLQRSVSRRNDPQAHALLGSLYDRLDRPADAARHWRQATAARVALPVL
VADIALPAADTKADPAWLDAEREYVPNMSEYTAPVIAEAPPEAEPGAVDYVLDPDARAAGEHEPASAVAPEPVSVPPRTA
IDIEDYFDSAPIPAAAIEAPVSSYRAGADDEQPAKPGGAGSSAGPASGDKA
>SEQF2266_AEE67773.1 hypothetical protein BPTD_2495 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDNTSATPPGTVPGTPGTAAADEAVASQSCKGKGVNSTLVTALIIVILLAVGLGWAAWLQRKQFVSAGQEVAARLNTLG
AELTQSRNDMREALALAQAQSGKVAELEGKVREAQSQYSALQQALQNLNDGASDEMLANDIERLITIASQQLRLAGNVSN
AIVALETAQARLARADRPRFASLQQSINGDLDRLRAVGVVDIAAQSARIDRLVALVGRAPLLVPDAAAPGVTAVPQANEA
VSASVDPGADLPADAAWWQRWQAEIASWPGRAGSALAHELGDLIRVQRVDQPTALLLSPEQAGQLRSTLRQRLLTAQLSM
LMRQPAVWNSELDAVAATLAQYFDGKAPDTVAALALARELGQVEIAVRVPDVADSLNGIAALRAAGFNADGQQD
>SEQF2266_AEE67774.1 putative uroporphyrinogen-III synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQIAILTRPQGRNGALAQRLHDAGWQTLCLPALRIEPLPPENGVVPLPRDYDLVVFVSGNAARLYLEQLRERGELPWPA
GAVAATVGPASARALLDSGQFGADTTVLHPAETAPTHDSEALWALLRARPALPRRALLVRGTQGRDWLADRLVAAGVEVS
RHAVYRRRPAPWAQEGRQRLRDWALAGERPTWLLTSGEGIDALVQGLREEQLLDWWLQGRFVVTHPVLAERLRALAGGGA
DAPMVKNCMPADEAIFATFVAA
>SEQF2266_AEE67775.1 porphobilinogen deaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAVERLTIATRASRLALWQAEHVRDLLRARYPACSVELLTLTTRGDQILDRTLSKVGGKGLFVKELETALLDGRADLAV
HSLKDVPVDLHAPFELSCVLERADPRDAFVSNDYGSLADLPPGAAVGTSSLRRESQIRARYPHLVVKPLRGNLDTRLGKL
DNGDYAAIVLAAAGLERLGLAARIRALLEPDDSLPAAGQGALGIEILQGRADVRAMLAPLGDAATLACVTAERAVSRMLG
GSCQVPLAAYARIDGDELALRALVAAPDGRRIVRAERRGPRDQAQAIGESAARDLLADGADAILAELLPTSPAP
>SEQF2266_AEE67776.1 integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLEFFQTLSWAAVFQIILIDILLGGDNAVVIALACRNLAPKQRMQGILWGTAGAIILRVVLIAFALTLLNIPFLKVVGGL
LLVWIGVKLLVPEDEGHDSIKGGTSIVAAVKTIIIADFVMSLDNVIAIAGAAQNAHADHQIGLVVFGLVVSVPIIIWGST
LVLKLIDRFPMVVTFGAALLGWIAGGMLITDVFVVRQFGEQPSAVKIGVEIAGALLVVLLGRWLASRKTASKESVNESA
>SEQF2266_AEE67777.1 integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELSSAAFWIALLQIIWVNILLSGDNAVVIALAARSLPPDQQKKAIVVGSAAVIVMRIALTLVAAKLLLLPWLKLIGAAL
LVYIGVSLLLPEGEDDGAEKGHGSLLVAIRTIMIADLVMSLDNVVAVAAAAMGDTTLLVLGLAISIPLVIFGSALLLKVI
ERFPIIVWVGAALLGFIAGELLVGDPALEESVARIDTMLGVTQHDFALMVGAIGAILVLALGKIFQARQRA
>SEQF2266_AEE67778.1 succinyl-CoA synthetase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSILINKDTKVITQGITGKTGQFHTRMCREYANGKAAFVAGVNPKKAGEDFEGVPIYANVKDAKADTGATVSVIYVPPAG
AAAAIWEAVEAELDLVICITEGIPVRDMLEVKNRMQAMNSKTLLLGPNCPGLITPDEIKIGIMPGHIHRKGRIGIVSRSG
TLTYEAVAQVTELGLGQSSAVGIGGDPINGLKHVDVLKLFNDDPDTDAVIMIGEIGGPDEVNAAQWAKDNMKKPVVGFIA
GVTAPAGKRMGHAGALISGGADTADAKLEVMEACGIRTTRNPSEMGKLLKSVL
>SEQF2266_AEE67779.1 succinyl-CoA synthetase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIHEYQGKELLKQFGVTVPRGIPAFSVDEAVAAAEKLGGPVWVVKAQIHAGGRGKGGGVKLGRSIDEVRQLSSEILGMQ
LVTHQTGPQGQKVRRLLIEEGADIKKEYYVGIVTDRGTQRVCVMASSEGGMDIEEVAAHSPEKILKVFVDPAAGLTDAEA
AELARGIGVPEASVGKAAAEFQKLYKAYWDTDASLAEINPLILTGSGDIIALDAKFNFDSNALFRHPEIVAYRDLDEEDP
AEIEASKFDLAYIQLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATAEKVTEAFKIMLKNKSVKAILVNIFG
GIMRCDVIAEGVITACKAVNLNVPLVVRMKGTNEELGKKMLAESGLPIISADTMAEAATKVVAAVK
>SEQF2266_AEE67780.1 hypothetical protein BPTD_2502 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLPPPDTPRQPLHTRSIRVQSYGREDGLWDLEAELIDYKGYDFPKRDGQLFKAGEFIHHMHLRITIDEAYTIIAAQAVY
DAAPYDGVCTNIEQAYRDLVGMNLLKGFRRQVKERFGHVAGCTHMTELSQVLPTAAVQSMAGRRRQNSNPDKRPFQLGGC
HALRTDGPVVQEYYPKWYTGANAGSSADTSSDSPSLSHTS
>SEQF2266_AEE67781.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIIHNLGFPRIGAQRELKRAVEAYWAGRQTAEALHETGRALRAAHWQRQADAGVAFVPVGDFAWYDHILEWTTLLGAVP
ARFGHPEGKPVDLDTLFRMGRGRAPSGKPAAACEMTKWFDTNYHYIVPELTPGQTFRVAREDLFEQVKEAQALGHRVKPV
IPGPLTWLWLGKGDAFAQGAGDIGKLQLLDALLPVYGEVLERLAGLGVEWVQIDEPALVLDLPQAWRDAYQAVYAKLAAS
PVKLLLATYFDGLKDNLATALALPVAGLHVDLVRAPDQLSDVASGLRPGQVLSAGVINGRNIWRTDLDAALAMLVPVREQ
LQERLWLAPSCSLLHVPVDLAGETELDAELLGWLSFAVQKLDELCLLGKALGGDADPAVQQGLAAQRAALQARRQSPRIH
NPAVAQRMAGQAGVSRERAPFGQRIARQQSELRLPAFPTTTIGSFPQTAEIRALRRDWKSGALTDSAYENAIRKEIEEVI
RFQEKVGLDVLVHGEPERNDMVEYFGELLAGFAFTKNGWVQSYGSRCVKPPIIFGDVARPAPMTVGWSAYAQSLTDKPVK
GMLTGPVTILQWSFVRDDQPREATCRQLALALRDEVVDLEAAGIRVIQIDEPAIREGLPLRRADWRAYLDWAVDCFRLST
AGVGEATQIHTHMCYSEFNDIIESIAAMDADVITIETSRSNMELLKAFEDFHYPNDIGPGVYDIHSPNVPEVDWMVELMR
KAAARLPKERLWVNPDCGLKTRAWPETEAALIGMVQAARTLRAA
>SEQF2266_AEE67782.1 transcriptional regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLEIRHLETLAAIRDGGSLQEAAERLHLTQSALSHQLRDLETRLGTPLLNRRTRPARLTTAGLRVLALADDVLPRLRATE
RELQRLAAGRTGRLHLAIECHSCFQWLMPALDAFRGQWPDVALDLSAAFSFAPLPALVRGDLDLVITSDPQALEAVTYLP
LFKYELVLAVAESNPLAANRHVMPEQLADQTLITYPVDRQRLDIFTGFLDPADIEPAAIRRAELTPIIAQLVASNRGVAA
LPNWALTEYLGQGWLRVCHLGPQGVWPTLYAAVRTEDSDSSYIDEFLTIARDVCFKTLSGIKAAKGLPA
>SEQF2266_AEE67783.1 recombination regulator RecX [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATFNRRPPSAARAGRRTANPDDEFETLAQSRDDAAAPSRPGRTLKARAVGYLSRREYSRLELARKLQPYAEEGDDIEAV
LDDLQREGWLSNARFAQSLAHRRAPRQGASRIVQELKQQGVADDQVAELREQLRATEYARALAVWQKRFGEKPADRAAYA
RQARFLAGRGFAHDVIRRILGGGDDELD
>SEQF2266_AEE67784.1 recombinase A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDDKTSKAAAAEKAKALAAALSQIEKQFGKGSIMRYGDNEVEHDIQVVSTGSLGLDIALGVGGLPRGRVIEVYGPESSGK
TTLTLQVIAEMQKLGGTCAFVDAEHALDVQYASKLGVNLTDLLISQPDTGEQALEITDALVRSGSVDLIVIDSVAALVPK
AEIEGEMGDSLPGLQARLMSQALRKLTATIKRTNCMVIFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRIGAIK
KGDEVVGNETRVKVVKNKVAPPFKQAEFDIMYGSGISREGEIIDLGVQANVVDKSGAWYSYSGNRIGQGKDNVREYLKEH
KEMAIEIENKVRENQGIVSRAATFPASEAEDGE
>SEQF2266_AEE67785.1 two-component response regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRILIAEDDSILADGLSRSLRHNGYAVDAVRDGLAADSALAVQPFDLLILDLGLPHLPGLEVLRRLRARNSVLPVLILTA
ADSIEQRVKGLDLGADDYMAKPFALSELEARVRALTRRGAGGGATIVRHGRLVFDQTGRIATVDDQTLDLSAREVSLLEI
LLARSGRMVSKTQLVDHLCEWGEEVSTNAIEVYVHRLRKKLEPSGVKIITVRGLGYCLERDQGASYLAS
>SEQF2266_AEE67786.1 two-component system histidine kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAPLFLLWPMSVAITYVVAQNIANVPYDRALANNLNVLSHQVHAVDGRAALRMTDAARDVLRVDETESVFWLALGSRGE
YLGGDRALPLPPNVGQPRPGEILYADDTLRGFGVRLAYTWIDLGLPDTQPALVMVAETVEKRAQLANDIIKGVIIPQFVV
LPIAVLLVWFGLSRGVAPLNALQQRLRARRPDDLSPIDEQAAPSEIAPLVGAMNDLLDRLSANIETQRRFVADAAHQLKT
PLAGLRTQAELALRDASPEEMQSSLRQLVTGSERATRLVNQLLLLARAENPDSPGQALTDLNAIAYEQTMQWVPQALALS
TDLGFEGADRPVGISGNAILLAELLNNLIDNALRYTPRGGHITVRVSARGDHAVLDVEDSGPGIAPEERERVFDRFYRVL
GTASDGSGLGLAIVREIAQKHQAEVVIDDHPTPYSDLPGTRIQVRFPLPGAL
>SEQF2266_AEE67787.1 putative sugar transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTATLSGQSPSAQRRPMTREERRVIFASSLGTVFEWYDFYLYGSLAAIIAQHFFSGVNPTAAFIFALLAFAAGFAVRPF
GALVFGRLGDLVGRKYTFLITIVIMGLSTFLVGVLPSYASIGIAAPAILIILRLLQGLALGGEYGGAATYVAEHAPHGRR
GFYTSWIQTTATLGLFLSLLVILGVRTFMGEEAFKDWGWRIPFLISVVLLGISVWIRLQLNESPTFKRMKEEGKGSKAPI
AESFGQWRNLKVVILALLGLTAGQAVVWYTGQFYALFFLTQSLKIDSNTANIMIAIALLVGTPFFVLFGALSDRIGRKPI
IMAGCLIAALTYFPIFKGLTHYANPALEKAQATAPVTVIADPATCSFQFNPVGTASFTSSCDVVKSFMARNSVNYENQAA
AAGSVAKVMIGNDEFASFDGKGLAPAEFKTKATELDKALTAAIRSHGYPAKADPAQTNYFMVVVLLTLLVIYVTMVYGPI
AAMLVEMFPTRIRYTSMSLPYHIGNGWFGGFLPPVAFAVVAATGNIYDGLWYPIIIAVMTLVIGTLFVRETKDNDINA
>SEQF2266_AEE67788.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSHTFMVHSEVREGALWILFDRPAARNAMTAEMEHAILALCESVAHRPEIKAVVFSGAPASKPAFMAGADFGALETATT
AEEFVALERSSEALLEAIEGMRVPTIAAMAGACVGGGALLALCCDIRIATPSLKFGFPIARTVGNCLSVKNYARLAENLG
AQRVRDMVFSASLLSADALLHAGAIREIVPEDALHGRAQAIAAQVMALAPLTLWATRTSLLRLRDKAVDGIADDDILSAC
YMSADFQEGVRAFMEKRAPAWTGA
>SEQF2266_AEE67789.1 ABC transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAIRIQGLTKHYGAHQVLRGIDLELAQGELLALLGPSGCGKSTTLQMLAGFDQPTDGQIWIGDRQVSGAGVMVPPERRN
ISLVFQNYAVWPHMTVFENVAYGLQVRKVARTELAQRVKRALDTVRLTALAQRYPSELSGGQQQRVALARALVVEPDILL
LDEPLSNLDAHLREEMRYEIRQVHDLLGLTTVYVTHDQGKALVTADKIAVMQSGQVQQFDSPVNVFSRPANTFVASFIGT
NNELHGQLAEPGALRVGDRVLHGDDRSQAGAGGAACLCIRPSAVKLGAAPGANTLSGTVTRVAYLGEYRDVQVELAAGQF
VRAYVDPSSTLEPGQRVEVHLPIEHCQILSVTTS
>SEQF2266_AEE67790.1 ABC transport protein, solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVAMTEKPAVAREPRAGRHALPAIAVTVLVAAALALLVLQPVGIIALNSWRDDLTGQWSLVNYLRIFTTPNLIEPMLNS
LVLAGSTAVIATALGVPMAWLVSRTDMPGRGLIRVLVLAAFITPSFIGALGWILLAAPNSGWLNVWLRQWLGGDSPLNIY
SMWGAVFVCAVYTVPFTFTIVATALDEMAVELEDASAMLGGGILRTMRSVTLPLVMPAIVAGFILSFIQGMTLFGVPAFL
LTPARVPVVTTKLAEFYQMFPPELNLAAAYCMPLLLMTGGLFFLRRRILGRRQYVMIGGKARGSRLVGLGRWRWPALLGA
LLVPAVTVFLPYASLTLVSLSKAWGQGPSWDNLTLHWYRWAVLDNPQTQSAIVNSLLYATMAATVCLLLGVVVAYMVERK
LFRGAWALGATASVPIIIPGIVLSVGFFSAFTQPFYGLYGTGALLVLAFVTTFLPIAYSHGGAIIKTISPDLERASRILG
AGQVGTFGRITLPLMKPGLVSGWMLVFIPVMRELSVAVFLITPQTNVMTTLIYNYKDGGNYEAVCATSNVLLLGTILIVM
LGRLLTGLARRRGAAPVTAGVTS
>SEQF2266_AEE67791.1 hypothetical protein BPTD_2513 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQYSRRDMLRLGVSASAALAGSVFLPVRAQDNPLYEAARKEGALNLYWGSYEQKSIEDIRDAFVKKYPGIQVNLLRQGS
QTVYTRLRLELQNNAANCDSLGTTNLLHYTELKKINALMAYRPTGAEHLPEAFRGLDPDNTFHVGAISITSINFQSQKVP
NPPESWQALLDPAWAGKITVGSPASSGDVAHWALAMRLKYGDDFFKKFAAQKPKVGQSNVDTVTDILAGERVVGAAAPFS
YSLTQKAAGQPVDVKVPTDDAILNLGLTAIPAKAPHPNAAKLFTDFLYSTEVSQILARNYWPTLRTDVPWAEGRSLESLK
WFRNPTDDLTKQINDTIALWRSTVG
>SEQF2266_AEE67792.1 3-oxoacyl-[acyl-carrier protein] reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNERLQGRVALVTGGAGGIGLAVCRRLQAEGARIVVGDIGEERVLAAAASLGEGALGVFLDVADRQSWAAAKRAVDAQG
WQVDIVVNVAGIVRDRSLAKMSDAEWSAVIDVNLRGTWLGCQSAFAWIGERGWGRIINVASTAIFGAYGQANYSAAKAGI
VGLTRTAALEGAKRGILVNVVAPGIVETAILADVPDQVREGWLARMPLKRTARPEEIAAVIAFLASDDASYMTGQTLVVD
GGATTGDY
>SEQF2266_AEE67793.1 hypothetical protein BPTD_2515 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVEFERIQLGERHVSSRITITESHIVTFAGLTGDFNPLHMDEVAARENGYGQRIAHGMLGHAVSTGLRSGIDDWDIVAF
LETRRRFVAPILAGDSVRYEAEVLELRPSRSKPFGVVKVSMQLRNQDGVTVQDGEDVFAVAMGGGVA
>SEQF2266_AEE67794.1 hypothetical protein BPTD_2516 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFDVTMPPVQDACSQPFWEAARQQRLLVQQCPTTGRHQWYPRAHSLADPGVAPRWVQASGRARLFSYTVIHKGGVQRAPY
TCVLVELEEGPLMLTRCPSERPLQVDMPMRVAFEKVGDTLTLPVFVPVES
>SEQF2266_AEE67795.1 hypothetical protein BPTD_2517 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSISNRAAIVGLCESPRRHAPEVHPYQIQMECVQGALVDAGLSLADVDGLCVAAGDWAEGGGVNSVTEFAEYAGLRPTWF
NSTDVGGCSYIVHAGHAAAAIAAGLAEVVVISYAATPCWWPLSTPSFDPFVFPAGPGQYELPYGPTLISAYGLYAQRHMA
RYGTTAEQLASVAVTFRAHAAANPHARLRTPITVDDVLASPMIASPLHKLDCCVVTDGGGAVVMTSAERAQDLRQKPVLL
SGFGAATARTQLSQIAPDLSTPATLSGPRAFAMAGLAPADIDVAQLYDAFTITPLLALEDLGFCKRGESGAFAADGQLTL
GGALPCNTDGGGLSSNHPGKRGIFALIEGARQLRGEGPGVQVPDAGRALVHGLGGTFCAAATAILSV
>SEQF2266_AEE67796.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIYRRLPPLIAVRAFDAFSRSGSIRAAADLLAISHTVVSRHIQNLEDAVGTRLVKKDGRGLALTREGQRFAAKTRRALDL
IADACGELVHGRGDAIHVCCMAGLASRRLLMRLPELESRLDGKELILQPTTARPDFNTDEADAEIIYLTQPFIGDGLRAE
MFSRPRILAVCNPAFRERFPDIGEPEHLVHLPLLHEQSTDQWEQWLGSVGVAQLPILHGPRLWHGHLTMEAAQLGQGIAL
VSELLANDRIARGDLVEVLPNVSVQMGGYYFVAPEHKWNDPAIATVRQWLTEALS
>SEQF2266_AEE67797.1 hypothetical protein BPTD_2519 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAQSAPAKPLAGLKVLDITHMLAGPYCTWLLGLLGAEVIKVERPGEGDFARAIAPFHGGESLYFMSVNRNKRSIAVNLK
TEEGKQILRDLIARSDILVENNRAGVMDRLGLGYDDAKALNPGLVYASISGYGQTGPYRHKPAFDVIAQAISGMMSITGQ
EGGPPARVGVSIGDIASGLFATVAILAAIEGRHGSGEGAFIDVSMMDCQMALMENAISRYLNAGDVPERLGSRHPLIAPF
QSFETQDFPIAVCVDTEPQWQRFCAALDLEPLLHDPRFQDGPMRALNHSQLEPLLNALFASGRRDDFIARLEAADVPCSP
INSIPEVARDPQVAHRQILVDNEGVKYVGAPFHYNRAPVGGETSPPALGADSVSILRELGRSEAQIADLQRTGVL
>SEQF2266_AEE67798.1 hypothetical protein BPTD_2520 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPATIVGAVLIVLGAAALVYKGFSYTSEETVLQVGSVKATAQTEKDVAIPSWAGIAAIVVGVLIIGVGRRRKAKKGPTH
RVGPVRGTQCRVNKARGEHGIGVRVLALQSADRGSFVHGLAQGRDLSDQSNPGGLTAS
>SEQF2266_AEE67799.1 recombination associated protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWFKNLKIYRLSAPWALNGDQLEECLARFAYQGGNNLEMQSLGWISPRENGLLAHTLNGQILLTLRAEKKLLPTTVVNQV
AKARAQEIEEQQGYKPGRKQMKEIKERVTDELLPKAFSIYRDTRVWIDTVNHWLVIDAAASAKADEVIGLLVKTIDPLPL
DNLYVEQSPAAAMTGWLAADEAPANFSIDQDTELRASGESRAAIRYVKHSIDVDDVRRHIQSGKQCTRLAMTWADRVSFV
LTESLDVKRVAPLDVLKENPDAATQNDDEKFDSDMTLMTGEVAKLLAELVDSLGGEKRV
>SEQF2266_AEE67800.1 aspartate carbamoyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSISQQAFLRDAMRRLNLTRDVFAGRIGVKRRALDTWLLPEGSQEFRAMPEVVERFVSEIVQNRDLLEKYTQSGQVGPLR
DRIAVEGRHQLLSVDQFTRESVEDLFRVADMMQPIARRQKVSRVLEGAVLGNLFFEASTRTRVSFGAAFCRLGGSVCDTT
GFTFSSMAKGESIYDTSRVMSGYVDAMVIRHPEQGSVAEFAEATNIPVVNGGDGPGEHPSQALLDLYTILTEFSRLGKLL
DGAHIAMVGDLKYGRTVHSLIKLLALYKGVKFTLISPQGLEMPGYIVEQASRNGNVIEQKSTLAEGLAGADVIYATRVQK
ERFANEEAGEGYTADFQVSRAIIDAYCGPDTIVMHPLPRDSRPGSNDLSTDLNHDPRLAIFRQTDNGIPIRMAIFAVLLG
VEGLVQHSMRDVTWQHPSHIGPDDSVFHGLD
>SEQF2266_AEE67801.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGEGADCRPGDNGQGLLAGPLRLLAGLNGLAALMLVAFSLGIVGGEVAPPALQAPLALFLAGLAAAMGAMLFGTAARYLQ
RRQAAAGVRGRGHLPAVVLAVALYLASVAAFGAGCWLAVAPADTDYDQLPTVYAARV
>SEQF2266_AEE67802.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRVGLIGALLAAGVLSGCASQGLLSGDTPGLSESFIVTADFQAAYRRAGEYVRVCHEQRPHPYGVVYQSSRRLGDRGAP
NEVHVFKREEPSKILEIIQSQTETPSTARVTVRVLGDGKWDAAEIAAAKASIQSATPVCRQGGD
>SEQF2266_AEE67803.1 entericidin A anti-toxin precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNKALIAVLLAMAALSAGCNTVAGAGKDIERGGEKIQGAAQK
>SEQF2266_AEE67804.1 putative exported endonulease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAHAIHLQCCAMKYAVVLAALLSLPLAAQAELVTRPNAVGHRDFRHAKKVLPRVYQNLERDFYCGCPYQDKRIDLQACGY
EPRKQLRRAQQLEWEHVVPAWTLGHQRQCWQQRVNGKPGGRKHCSRTDPSFARAEGDLVNLMPSVGEVNGDRQNFRYAVW
ADRPAPMYGQCETIVDFKTRRIQPRKYVRGRIARIQFYMVERYRLKLSREDRRVLCVWARAYPVDDWERARDQRIRTLQG
NGNHYVTDPAAIQRQCG
>SEQF2266_AEE67805.1 hypothetical protein BPTD_2527 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRYHGPPERPCRIQGGDMGTAKYDHPGYLANAGAAGTYHVGVWCPHGYPAHVHIGRAGSQDDARLRLRIPDGVFQSMPDD
METLCRRAFGQALAEGLLAASEGDFQEVRLRLDAQPWSGPLAAAQPA
>SEQF2266_AEE67806.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMIENLPRMRRAGWAAAAITVAGLAFTGCTTTTPNNQAATADQRNEINAGADATLSKLYTASPQAKDLVQRARGVLVFPS
VMGASFIVGGEHGKGVLRTGGKNAGYYSTTSGSVGLQAGAQSRAYVLLFMTDEALAQFRQSSGWTAGADASVAVATIGAN
GRIDTNTAKQPIVGFVLNNAGLMAGVSIEGAKINKLEL
>SEQF2266_AEE67807.1 hypothetical protein BPTD_2529 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRGMKKSTCFAVHLVATALVVIVALAWPSFPTRLISVHFADGRLEVNLNSNAEFSYAILADVPASIDATALESLSLKPS
EEGSIVLPAPEPANREYSIIVIKGKDWFELVRQPEAWLRAKFRFEQRGGYTVLGRRTVNIDTESTYSPRPLVLSHTPTLQ
VGQVDSFPYPAIGLAVALLEFLWEKPVMQGPTTLSYREFVKQPLTEKLRAVQEGRFSVQCAGFRELFVHASTGIKGLKVR
PVDAYGSDPQLPGLTSYSHAATEVWVEQLNKWVLFDPWNGIFVERDGIPVSANEMSTHSADQLSIVPVMESIPRFHVDEH
GQTKKVDYDPKSLSLTSFTCVDAGCQPGYQQYFKIIRLRDVHL
>SEQF2266_AEE67808.1 putative transcriptional regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRTEPTVTTLPPIPAKRYFTIGEVSDLCGVKPHVLRYWEQEFTQLKPVKRRGNRRYYQHHEVLLIRRIRSLLYEQGFTI
SGARNRLGDARDAAHDAEAAVRLSAGELQALRNELGDISSMLGEALGGQSENAANA
>SEQF2266_AEE67809.1 integration host factor subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGTTMLAEPRTLTKAELAELLFERVGLNKREAKDIVDTFFEEIRDALARGDSVKLSGFGNFQVRDKPPRPGRNPKTGETI
PIAARRVVTFHASQKLKSVVEQPNSPPDPASAE
>SEQF2266_AEE67810.1 phenylalanyl-tRNA synthetase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQFPESWLRSLVNPSIGTDELAHRLTMAGLEVEETEPAAPPFTGVVVTRIVDIAPHPDADKLRVCQVDDGSGALLQIVCG
APNAAAGLTVPLARVGAELPGGMKIGVAKMRGVQSSGMLCSARELGLSQDHAGLLELPAALRPGTDIRAALDLDDTLFTL
KLTPNRADCLSILGVAREVAALTGTPLTAPAAEPVPVTIDHRLPVAIQAPDLCGRFAGRVIQGVNARAATPEWMKTRLER
AGQRSVSALVDISNYVMLEVGRPSHVFDLDKIGGDLSVRWAREGETLELLNGQAVALDPKVGVVVAGEQVESLAGIMGGE
ATSVTLDTRNIYLEAAFWWPGAIAGRARRYKFSSEASHRFERGVDYASIPEHIELITRLILDICGGQAGPVDDQCVNLPV
REPVRMRLARCHRVLGVAVERAEVAQIFTRLGLPFQEQGDDFVVTPPSYRFDIEIEEDLIEEVARVYGFERIPDVPPVAR
AKMHAQPEARRGAHAVRRLVAARDYQEVVNYSFVEAAWERDYAGNDNPVRLVNPIASHLSVMRSSLIAGLVAIVRHNANR
KQSRMRLFELGRVFHRDPQLADGPLEVAGVRQPLMLAGVAWGGAVEEQWGVPHRQVDFYDVKQDIEALFGARADALRFVA
DRYPALHPGRSARIELDGQPIGWLGELHPQWTQQADLHHAPVVFELDFEALAERRLPAVRKLSRQPVVVRDLALWVDAKL
PAQAMLDTVAAAIARDPQLSVVQDAQVFDVWREKPVAGQTVTEKSLAFRFWLQDTEVTLDEARVADCIARIKDALVAAHN
ARQRA
>SEQF2266_AEE67811.1 phenylalanyl-tRNA synthetase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLLVDDLVSQAQERFAAASDAAALENAKARFLGKEGALTVLLKALGKLDPEQKREMGARINQAKQQIEALLNARRAALA
QAELDARLASETIDVTLPGRGKAAGGIHPVIRTWERVEEIFRSIGFDVADGPEVENDWTNFTALNNPLDHPARSMQDTFY
VDMHDADGLPLLLRTHTSPMQVRYARMHKPPIKVIAPGRTYRVDSDATHSPMFHQVEGLWIAEDISFADLKGVYTDFLRC
FFESDDLVVRFRPSFFPFTEPSAEIDMMFTSGPNRGRWLEISGSGQVHPQVVRNFGLDPERYIGFAFGSGLERLTMLRYG
VNDLRQFYEGDLRFLRQFNE
>SEQF2266_AEE67812.1 50S ribosomal protein L20 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRVKRGVTARARHKKVIAAAKGYRGRRGNVFRIAKQAVMRAGQYAYRDRRNKKRTFRALWITRINAAVREQGMSYSVFI
AGLKKAAIELDRKVLADLAVRDKAGFAAIVQQAKAALAA
>SEQF2266_AEE67813.1 50S ribosomal protein L35 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPKMKTKKSAAKRFKVRGSGSIKRGQAFKRHILTKKTTKNKRQLRGSAAVHETNVASVKAMMPFA
>SEQF2266_AEE67814.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE67815.1 deoxyuridine 5-triphosphate nucleotidohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSVDLKILDARMREYLPAYATPGSAGLDLRACTEASLVIEPGQTVLVPTGLAIHIGDPRYAAMILPRSGLGHKHGIVLG
NLVGLIDSDYQGQLMVSTWNRGTQPFTLDPMERLAQLVIVPVQQVAFNVVEDFDASERGAGGFGSTGRG
>SEQF2266_AEE67816.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE67817.1 GntR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHHRAMNTQPLYLRLADHYRRAIQTGVLAPAQRMPSVRNLVRAHHVSLSTALQACRQLEDDGLIEARPRSGYFVLRPRRP
ALAPVPEPDIKGALDPAQYVGIHDRVSDFIASCQQHPLSADFALAAAPPQAYPMRALQLALTRAARHTPELLTAPVPPYG
HPEFRAVLARRAMECGISATPDEVLVTHGCIEALNLALRAVARPGDTIAVESPTYFGLLQILESLGLRALEIPTSPQRGI
SIEALELALQTHANVRAVVVVPNFQNPLSCVMDDSDKARLVTLCERTGIALIEDDTYGALGDHGTPLALKSWDDSGNVIY
CASLHKTLAPGMRLGWMLGRRWSRRIGMLKFAQSRPNPPLPQAAAADYMGTKAYDRHLARLRQTLRVQREAMAAAVARHF
PDDTRLSVPTGGMLLWVELPAGMPAMRVFEQALRAGIRITPGPMFSNSNRYDHFLRISCGVPYTADIAAAMQRLADIVAA
GL
>SEQF2266_AEE67818.1 hypothetical protein BPTD_2540 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPRKFCDMEGDMDIQEQIAVIVHTVSHQGGRIDALHSTLASVLHLVKGSPGLREAIEAHLEQSYANLLARSENPQYVAG
FESVRDTVVAALK
>SEQF2266_AEE67819.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67820.1 hypothetical protein BPTD_2542 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKRLSVVHSPNGAPMAPSSHEWTDTLKDVYTARAANADLNARYIPLLPVNQRIQHERDRALANMLRQHLSVPPAQARVL
EVGCGSGSNLLDLIRLGFDPANLMGNDLMDSRVEQARHRLPQAVPILAGNALDLDLEREGFDVLYQSTVFTSILDAQARR
DLAQRMWHWTKPGGGVLWYDFAYNNPRNPNVRGVPLREVRALFPHARIHTARVTLAPPLARRLPATLYAPVNNLCPFLRT
HLLCWIGKPAAP
>SEQF2266_AEE67821.1 DedA family integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAYIDRIGDFIQANQDWAGPITFLLTFGESMVLVGLLIPATALMLLTGGLIGAGTLSPWGVLAWGIAGAIAGDAVSYAL
GRWLGPGVMRRWPLNTQRSAVARARLFFYRYGFASVLIGRFLGPIRSTIPTVAGIMGMHHLRFQLANVLSAVAWLPLMLA
PGYITARGLGAMDNAQHIGLAAGMGASVLIGCWLLVAVMRKRRQPARANRRP
>SEQF2266_AEE67822.1 integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSVTQVVLGAAIQGSMLGRSQGRKALLYGGLLGTLPDLDVLMRYPDPVSLMTYHRGFSHSILVLTALAAVMAWLIRRRW
SDAPYSGRRLFATLLLVLVTHPVLDAFTVYGTQLFWPFPLVPESWSAVFIIDPVYTVPMLAAVLVAAWRGMTPATCRGLA
ATVLFGAAYLLVALTGRFQAETSVTAALRERGEQVEAVLATPMPFNTLLWRVIAKTGDGAYYEAVSGRFDRQPPEMARLP
LHTDVGQALAGVPLHERLRWFTNDWLRYDALGDALVVTDLRMGIAGYYTFRFVMAERDGDRWRAVTPRRWPSDRGNWEQM
RLTLARIVGSQPLPLARWARQAEN
>SEQF2266_AEE67823.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67824.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEYLFTLKYQLADADSDLDALVERLGEAGCDDALVGMGLPGRLVLEFTREADSAEAAVRSALADVRRAMPTAALIEAAPD
LVGLTDVAQIVGVSRQNMRKLMLAHPATFPAPIHEGSASLWHLADVLGWLQARGGYPLAQATLDVARMALKVNVAKEARR
LPRSAGAGLDALVG
>SEQF2266_AEE67825.1 LacI family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTKATGNRKVVKIVDVAKAANVSPAVVSRILSNDSKLVVREETRARVQQAIEELGYTPNLQARGLRLSRSNTLAMIVPE
LNSPVFPVIIQGAQRAAWERGYSLLVGGMGGEEEDPKVAGRLLRSNRIDGLLVTTGRHEAQMLQELATLNAPFVLVNRYL
DDQHPYVELDERGAAAAITRHFIELGHRRIAFLGGLQRRVGERRVAGYADALAEAGLPWVPQLVVDAGYYKPGGEDGLRQ
LLALDEPPTAVVATNEIVAAGAMAAAHRQGVRIPRDLSIASFSDGIVAELLSPALTAVRFPLERMGYLATAMLVDIVEGR
GEPQAGLCLPHESVIVRDSTARPPGRKARAATR
>SEQF2266_AEE67826.1 ABC transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHQDTILNIKGLGVRYGRNQVLHGVDLALPRGASLGIVGESGSGKSTIAWTVLGLLPPGAAVTAGSVVFDGEDITGERAA
GLRGDRIAMVFQDPFTALNPSLPVGRQITEALVERGRADARAARAEALRLMDEVRLPRAGTLLDAYPHQLSGGMKQRIVI
ATALACSPDLLLLDEPTTALDVTVEARILDLLDELRVQRGLSMVFISHNIGLVERMCSRVTVMHGGRVQEAGAAQQVLWH
PAHAYTRKLLAALPLLEKRAPAVPAVGAPIARVRDVRLTFRPAHPLGGWARLLRLPRAEGVAALAGVSLELRPREVVGLV
GESGSGKSTLGRCLVGLQAPDAGTVELSDHDVYRASPEVARRLRRQSQMVFQNPDSSLNPRQRVGEVLRRPLQLMGLDRR
QQDRRLAELLDLVRLPAAYAERYPHQLSGGEKQRVGIARTLALEPSVLVCDEATSALDVSVQASILELLKDLRDRLGVAM
LFISHDLAVVSQISDRVVVMRHGAIVEQGRTDQVLSAPAHEYTRLLLDSVPAFVARRAREAAVA
>SEQF2266_AEE67827.1 ABC transport protein inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALVVGTLMLAAIVLVSLGAPWLAQYDFDAMDAAARMLPPSPQHWLGTDEFGRDVFSRVLYGGTTSILLGVSATALSFVV
GVPLGLLAGYLRGWIDDTVMRAVDIVISVPPVMLGLLILASTDPSLWKAALAVGIIYTPIMIRLARGMTLSLANEEFITA
ARARGEGLAWILLREILPNALPPLVVEASLRVSFAILLGAVFSFLGLGTQPPSSDWGLMVAEARPYLERAPWVALSPGLA
ICLTVIAVNLMGEGLRKRLDARGEQRN
>SEQF2266_AEE67828.1 ABC transport protein inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWAYLVRRLGHVVFVVAAMAVLIFLITQAMPGNVAYTIAGHFASPEQVAAIEARLGLNDPLWTQFWRWAGAALHGDMGQS
LVMGRPVGPLISEALGRSALLAVAALALTAALGIFLGVVAAVRHGRWQDRLILAFSWLSISLPQFLIAIVLVLLVAGTLG
WLPATGYVELSAGFGAWLSHLVMPVCTLVLGLVAHVTSLQRSSMLETLSALYVRAARAKGLRERTVLYRHALRNALIPTV
TVLALDFGILMGGIVVVETVFSYPGLGRLLIFAVEQKDLPVLQAGVLAVTVIYALANLAADIAYAILDPRIRYGNLDTH
>SEQF2266_AEE67829.1 ABC transport protein, solute binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMSKTGKMAAALAALCLSVGLAGAARAESTLQVALSTSLNSLDPNVTTLGEEYVFNGLVFGGLTRIDANSKVVPDLAVSW
TPSADLREWTFKLRPGVKFHHGKPLTASDVVFSFQRIVDPATGSPGRTQLEVMKSVDAPDDATVHFTLTQPYADFPGLLT
GRQLRVVAQDRIDTIKTQPSGTGPFRFVRYTPGDQLELERNPDYYDKDRIKIDRVVMRVMPEAAARVAALRSGSIDMIWK
LPLETIPDLKKDAAVVVDSVPSASWDGIVLNNSKPPFNDVRVRRAVFLALDKKELVNFALFGEGSPTHSPIAPTDPAFNK
DIGFAPDLAQAKQLLAEAGYAKGFAVDIFVPAGRPSRERLGVAAQQLLRPLGIKLNVQRVPYNRYSAGVAGIAPMYVDGF
FASPVIDAATSPWFYSTGSWNARMWHFSSKRVDQALDAARASTDRAEQIRHYQDFQRALTEEVPGIIGYVTNVATAYRAD
IKNYHTNPFLWLDLYDVEKTGGAR
>SEQF2266_AEE67830.1 hypothetical protein BPTD_2556 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGKRTEGSGKGGAKAAGKGGLGEVVLLSGGNPQIAKGYGDAPVQAYIAAMPGWKRAVGERLDALVARTVPGVYKAVKWN
SPFYGFEGEGWFLSFHCMTKYIKVAFFRGASLQPLQPGASKQKDVRYLDIYEDAPFDEARFADWVAQASRLPGERM
>SEQF2266_AEE67831.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLLAFLLAAALLAITPGPGIAYVVARTVAGGRAEGLASCLGTALGGLVHVLAAALGLSVLIVESALAFSLLKYAGAAYL
VYLGLRMWLRPRPAAVRVVAPQGARRALAEGVLVEALNVKTVLFFLAFLPQFVDPGAPLAPQLALLGCICVTLNTLVDVM
AVAAAHRLLRSEAARVARARVLTRVSGTTMVGLGVFLALARRD
>SEQF2266_AEE67832.1 hypothetical protein BPTD_2558 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYLPAHFAETRPEELARIIRAHPLGMLVTQDAQGLDADHLPFEFDPDAGPHGTLIAHVARANTLWQRCPDGSAVMVVFRG
AEGYISPNWYPSKHEAHRQVPTWNYEVVHAHGTLAVRDDERFVRGVVARLTRRHEAGEPRPWKMTDSTPEYIDSMLRNIV
GIEVAITSLVGKRKLSQNKDERDRLGAVQALQARGQDTLAQSMARAE
>SEQF2266_AEE67833.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGQSGKPASRPSGPNGAGRRIYDLLRGQIADGTLAARAPLPSTRALAAGLGVSRTTVTAVYEQLAAEGFLDTAPGRAARL
ASPLAAPDPDATPASPPAGRPLTLSAWGRRVANIGTPAPLPHPPVRYNFLYGALASRDFPSLAWKRAYQHALQRPPHSLS
YAPPEGEPALRRALQGYLRRARGIACEPGQILIVQGSQQAIDLCARLLLDAGDDFVFENPGYLMARHCFAATGARLLPVD
VDEHGLDTEQLPDTARVRLAYVTPSHQFPLGGVLPIGRRRQLLQWARRHDAWIVEDDYDGEFRYGQRPIDALQSIDTDGR
VIYVGTVSKALSPRLRLGYMVLPRHLVEVFRQAKRLADRHAPALDQQVLASLIDSGVYERHVRRMRRDNERRRTALLEAI
ARELPQGARVDGTAAGLHVVLGLPGLDARDEPALVATAREMGVGVYPLAPLHAPAGAGQARRPAGLILGYASLDVEQIRQ
GIAILASAIGRAAPARANSRTARRLARPPP
>SEQF2266_AEE67834.1 hypothetical protein BPTD_2560 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHDRIASMPDLTGILPDRVQRGNIWRLSIAQALAGANSVVVYATGAIVGDMLAPSPMLATLPISIFVVGMAACILPAGA
IARRHGRRAAFLAGTLAGVLTGLLAMAAVIMGGFWLFCLATFFGGCYAAVVLSFRFAAADGVAPERRARALSLVMAGGVA
AGVVGPQLVTWTMDWWPPHMFAATFLVQAAVAAASALILLGVRLPMPGAAEMASGRPLAEIARQPRFVAAVVCGAVSYML
MNFLMTAAPLAMHLCGHSQQSANLGLQWHVIAMYAPSFFTGSLIVRFGALRMATAGLVLTGLSAAIGLAGVDVAHFWWSL
ILLGLGWNFGFLGASALVLECHRPEEKTRVQSLNDFIVFGLMALGSFSSGGLLSAYGWNTVLWVSFVPLVVAAVALVLVP
SRLLSGRAGEGEK
>SEQF2266_AEE67835.1 alcohol dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKETYRAMQASRPGVLELVERRTPRPAAAEVLIRVEACGMCGADIADIEKAGPTVPPRVPGHEVVGRIVALGGQVPPIWR
LGQRVGVGRLGGHCNECDQCRQGRFQLCESQPIVGASCDGGYAEMMLARATGLVSIPDELDAQEAAPILCAGVATFNALR
KCGAQPGDLVAVVGIGGLGHMALQYARRMGFRVVAIGRGADIATDAMALGAHAYIDNLEQNVVATLRRMGGAQAVLTTID
QAEAVSALLGALAPEGRLVVLNPGKSALQVSAGLLVGGQRSIVGSLTGTPHDNEKALNFSVLVDARPSIEVWPLARADEA
YRQLQSGAPRFRLVLAMGNTDQD
>SEQF2266_AEE67836.1 hypothetical protein BPTD_2562 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSVRVAIVGGGLAGLYAAALLEARGVTDYVLLEARETFGGRIMSVPVAAEPDAQRDAAERFDLGATWFWPAMQPELLRV
VTAFGVEAFEQYETGAMLVERARDQPAMRIDAGASMSGAWRMAGGMGALTDAISRRLDAARLRAGWRVQRLRKVDEGVDV
EAEDGVGRARCWRAAQVLLAMPPRLAVRTVAFAPALPDVLALPWAACQTWMAPHAKYLAVYDMPFWREQGLSGGARSAAG
PLAEIHDASGQQGGAALFGFLGVPAAARGRMAQADLRAACRAQLVRLFGERARWPRAEFLKDWADDVCTAVDADRCAQGS
HAELPPALADAGAWKDRLIGIASEWSPAFGGYAAGAVDAARRGVEALLGSPDAGVPARRHQGRLWEAWR
>SEQF2266_AEE67837.1 hypothetical protein BPTD_2563 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVNADFSLRATVSPRQYQWVASPQPGVERVMLDRWGGEKGRATSIVRYAPGACFPRHEHPGGEEILVLAGSFSEEGGRY
PAGWYLRNPPGSSHAPYSAEGAVIFVKLRHMRPDDSRRVRVDSRDAAGWRVEDGRAACVLVSDRDEQVSMVRLPPGAGVF
ADAVEGAEMLVLEGGLAEGAREHGQGTWIRLPAGCHAGFCAARDGALVYLRTGPWAGQAVDQGQAC
>SEQF2266_AEE67838.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLPAHLNALRAFEASTRHLSFSEAAAELSVTPAAVGQLVRSLETWLGMPLFVRATSGRTRLIPTDAALRALPEIRAGFD
RLSAGLERLREDAAGGALTVTVSPAFAAKWLLPRFERFQAAFPDTDVRLETNLKPVDFVAQRVDIGVRYGAGNWPGLTAE
KLMDEQMYPVCSPELLRRIRPVRQPGDLERLTLIHDLSMDGHAGFPTWDMWFRAADIAGVATSRGLKINNSAAVLQAAID
GRGVALARSVMAGDDLAAGRLVRLFPDIHFDSELAYYIVY
>SEQF2266_AEE67839.1 AraC family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAVRVAVFAFEGASLFHLSVPAMVLSALNGTPSLPRYEVRYFAQSPGRMRSDHGVVIEVSDGLQALRRADIVIVPAWHD
PETAAPAEVTDALRKAHKQGKLIVGLCLGAFVLADAGLLDGKAATTHWAAREAFARRFPDVLFRPDVLYVDDGNVVTSAG
TVAAIDCCLHLVRQRHGCEAANHMSRLLVTPPHRQGGQAQYIERPVPQLPHDNRLPGVLEWARDHLAEDLSVDALAEVAK
MSRRTFTRRFRETTGTTVTKWLNAERVARAQQLLEVTDRSIECIASEVGFGTPLSLRQQFASQLGTSPSSYRRSFCNALR
AAA
>SEQF2266_AEE67840.1 hypothetical protein BPTD_2566 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQIKSFTRALALALCFSAATVTAQAQSTTEKQVQLQQIRNATVKITYAGTTFLIDPMLARKGAYPGFENTYRSTLRNPLV
DLPLPVQDILADVDAVIVTHTHLDHWDDAAQQLLPKDIPLFVQNQADAVTIRSQGFTNVRVLADQADFGGVTLSRTGGQH
GTDDMYARPEVATFLGDIMGVVFQAPDHKTLYLVGDTIWRDEVDQALSRHRPGVVVINAGYAMLSDYDGSIIMGKEDVLR
ASRSVPGATIVAVHMDAINHMALTRDELKAYVDQHGIEDRVRIPADGATIAF
>SEQF2266_AEE67841.1 hypothetical protein BPTD_2567 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRHLLAGNQLRQSLLIAQPASVRVALVAGLQAGLAIFVALVSAHLSPWPHLVGFSALGGLAALFGRFASAQGRQRIVMVC
GLLLVAGVLVPSLATYAGAGALSMVLLLALSAGLYTLAVWRWGLTGGPGAVIFVFAVGATLAPVDSAAAVVERTLATAWG
ALVAWLACALTDRLRPHGAVAMAAAPLPPLSLQLMVAGRIAVGAGAAALIIFWAGWQYPAWAAIGAAAVMQGTHLHLTMN
RSLQRMAGTIVGACIVWAILAQDPSFWTLVAAVVLCQVITEVTIGFNYALGQVTVTPMALLMTYMASPAPASNMPVERVV
DTIVGAAIGIVFAVIFSTVDDRVHLARRYRKLRIWR
>SEQF2266_AEE67842.1 hypothetical protein BPTD_2568 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTLTCLGGAGTVTGSKHLLRHGDTRLLVDCGLFQGLKNLRELNWQPLPVAPADIDAVVLTHAHLDHCGYLPRLVAEGFR
GRIHATPATRDVAELILLDSANLQEKDAEFANRKGFSRHTPALPLYRVVDAERALARFSGVALHRETALPGGATLTLRRA
GHILGAATAQIDIGGMRVVFSGDLGRYNDPVMHDPEDVRNADYIVIESTYGNRRHDAADPVEALGAVIERTVLRGGTVVI
PAFAVGRAQTLIHALWKLRQAGRLHNVPVYLDSPMATSATELLARHASEHKLSAQDCAAACAAVTYVRDVEGSKALPANR
YPKVILSASGMATGGRVLHHMAAFGADHRNTVLFAGFQAAGTRGRKLLDGATETRIYGQWIPIKAEVAELPMLSAHADSD
ELMRWLAGFQEAPRRVFIVHGEPQASEALRERIQRELSWQATVPLQDHGYTL
>SEQF2266_AEE67843.1 putative solute transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASSPADTPHRSWLRWLPGLAVLKTYQAAWLPRDLAAGLVLTAMLVPVGIAYAEASGVPGVYGLYATIVPLLAYALFGPS
RILVLGPDSALAAPILAVVLSVSEGDPMRAVATASLMAIVSGLFCIILGLLRLGFITELLSKPIRYGYMNGIALVVLASQ
LPKLFAIPTDDGGPLRELWQLAQAVLDGKTNGYSLAVGSATLVLILLLKRFKRLPGILIAVVLATLAVSLFGLDGRGVQV
LGEIPQGLPGFTIPWLSNADLATIVLGGCAVALISFADTSVLSRTYAARTHTRVDPNQEMVGLGVANLATGFFQGFPVSS
SASRTPVAEAAGSRTQLAGVVGALAVAALLLAAPNLLRHLPSSAMAAVVIAAAIGLFEFKDLRRIFRIQQWEFWLSMLCF
AAVVAFGAIPGICLAVVVAVLEFLWDGWRPHFAVLGRVPDLRGYHDLKRYPHAALIDGLVLFRWDAPLFFANAELFQQRL
LEAVQASPTPVRRVVVTAEPVTSVDVTSADMLRELSHHLAESGIALHFAEMKDPVRDKLKRFELSEVFGADRFHPTVESA
VDDYLKRPPHGTIDP
>SEQF2266_AEE67844.1 hypothetical protein BPTD_2571 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRDLPVLRALRSLPDKVVGEALVSNDAISMRYDVDASTGKVVRPSHDLYGQSISGKVLIFKNTKGGVATGWALLNLKSR
GTAPIALVCDTTNPVFVQGAALAGLPIMDGFRESPRSAVRTGDVVELDGISGELKVLRRGAGGQ
>SEQF2266_AEE67845.1 hypothetical protein BPTD_2572 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLTLEEQAMLDGRRGPTLQWALQLQKQVGEYFGAEDMVEVSSVHVSGDVEELGVVGTEFLEHIARQGGSCATHTITDPR
GVEFHGARLRQDPGAIEIETRTVAAFGEMGFKQCNNCIIYQTHMQPGLGEHLGWGDTGSVIYANSVYGARSNFEAGPSAL
AASMTGRVPRYGFHLDEPRKANVIVRVHAAPRELAEWGALGCLVGKTMNGYWDVPVFTGLDVRPDSDALKHLGAALASFG
SIAMFHIVGVTPEAPDLASTLSAERNIRILDVEADALERVFQAYDADFAHPDIVVFSAPQLSAQELTLIADAMLGKNVAA
GVRMFVTAPESVVAEIEASGVKNRLTAAGVEILTGVCFYLLTPRILASLNRFSRLTTNSAKLANIMGGHGYQIQLCRLED
CIRAATEPRDE
>SEQF2266_AEE67846.1 ABC transport protein, inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAYVLPESTPGKLQHLTIFIVSILCGLAVWAWTSGSLFPSILFPGPQATLREGVRMLESGSIIVDAAVSLARIVAGFTI
GSAIGIVVGLLIGYFPMVRTAFNPYLQFFRFVPPIAWVSPAMIWFGVGETSKIFIIVYGTVFTVALSAVAGVADAHVNKI
RAAQMFGATRWQIFRHVVIPSTVSPILTGMRVSMGISFMTVIAAEMLAAESGIGYLILNSRLWMATDKIFVGIFVLGCLG
YGADRIFDLIIGRWARKYHPNPSR
>SEQF2266_AEE67847.1 ABC transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFDYLVLDDVRFKHPGAKPGDPDVLGGMSLQLRRGEFVCILGPSGCGKTTVLNLIAGFERPDRGAISLNGKSIEGPGME
RGVVFQGDDSLYHWLTALENVEFGLRIARVPPRERRQKARAYLDIVGLRGQENKFPSQLSGGMKQRVNIARVLACDAEVL
LMDEPFGQLDAQTRATLQDELVEIWRQTHRTVFFVTHDIAEAVALADRIVVMRAGPSSSVKEVVTCSQPRPRDRGHPDFG
QMYNRISGLISEEVAAARGARLEGELA
>SEQF2266_AEE67848.1 ABC transport protein, periplasmic component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRRNLIAVLPLLIVAAAVRSEAAEPVKFATGVDAVFLPLVIAVDKGYAKQRGVDAAYKQFASGAMALEAVVAGDADVAM
SSEISTLGPRAKGAKIKTVARGAYSKDLIGLAAISGINGAQDLVGKSVAYPKGTAGEYYMDQYFQHYGISRDALKLVNVA
TPEMVPLLARGDVQAIFAWEPWFSRARSVVKDFKVVEMSGQNGIYTMQFLTNFSEKFLRERPEDVKKTLLAIGDATRWLN
DPNNAAEAAAVLSRVFKVPEADAPRQFEQLKYRLESPEVLKADLVRAGGWLKDKGLIQSADVAGLVDGMLVPDVLRSVPA
AVVNQ
>SEQF2266_AEE67849.1 hypothetical protein BPTD_2576 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPTTLADVDTVIINANILTLDRDCPHAQAIAFAAGRILALGTTQELSPLAGRAATVVDARGSTLLPGFIDSHSHLMFGG
VVAQALDLTEAACLSDLLDMVRSRAQSTPEGEWIRGYGVAAGRLKEKRYPTRQELDQVSGGRPVWLAEDSFHASLVNSKA
FRMLEIPLSTPGVELAADGSPTGAFLNDAANVPARQRVFGFISDDEARQMLQHVTQLGATRGVTTVHAFEGSRMSADRDI
ELLMRFRHELPIHVVPYYETFDVERAMQLGVSGVGGCGRNCLDGMPNIQTAAMVDPYCCSEERGSLFQESIKLHNFVIAA
FERGMQVGMHAMGDAAIEQLLATYERAIEETGRTDLRPRIEHFHVPSRDHVRRAADLGVGLAVQPIFTHLWGGRDGIFFE
RLGERRYKRIDTYREILDSGAIASCGADLPVHPADPLRWIQLLVDNQIDRDQSVSMTEAIRMCTYNGAWLGFQESETGTL
AVSKAADAVMLGRDPHQCMPHEIAAIPILKTLGGKLVFESSRP
>SEQF2266_AEE67850.1 membrane efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSPNVERRHPWRALAVLLTGNFVTILDLFIVNVALPSIQHGLSATDTDLQLVVVAYALAYGLCLINGARLGDLFGRRRL
FMAGMGLFTLASALCGLAVTPWQLIAARALQGVGAGVLMPQVLASIRVLFEGEARRRAFGVMGAVQGVAATVSQLLGGVL
ITMNAFGLGWRLVFLINVPVGIAALLAGRRALPEWRAPIATKVDMRGALLGAAGLALILVPVMEGREHGWPWWSLVGPVL
ALLVLGYFVHYEQGLVRRGGVPMLDMGLFANRPFVAGIGAVFFFFSAISSFFFALTLLLQFGLGMAPLAAGAVFTPSALA
FFGASLVGPRLAARYGRGALLFGVLVFAAGVALSVVTAATQPHHLPLLVASLVLNGAGQGLVIPLAFNAILGSVREEQAG
MASGMLSTLQVVGTSTGVAVVGGVVFAVLEGAGGWPVGDGAMVYGRALAVAMVYNVAAALASLVLFRAATRR
>SEQF2266_AEE67851.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYDRIYSMMKNPICAITPNPAMTQLAPSPTVDGRRLRGERARARVLDEAVKLLSVEGLDGITFGQVAERAEVGKSNLQVL
FGDKERLQLAALDHAIGLYQAQVIEPAMRKRTPLARLRALMNGWFDFVETRQLPGGCVITAASSEYRARPGPLRDAIRQY
RDGARARLRELIRQAKAQGQLAADTNEARLAMDLLAYQAFANVAASMDDAAEFKRAKAAVAQMLAGGAG
>SEQF2266_AEE67852.1 HipA-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRRSHSRSLSIWTNGVRVGRWTVPARGEMELQYDVDWVRADVGRPLSLSLPFNLQNLPLKGERVANYFDNLLPDSDAIR
RRVAERFRTGSVDPFDLLKAIGRDCVGAVQILEDEEIPEGFDRIEGVPLSEEDIERHLIETVTPRAFAAGRDPDADFRIS
LAGAQEKTAFLWWGGQWLAPRGATSTSHIFKLPLGLVGGRRADFSTSVDNEWLCLKLLKAYGLDVAEASIATFGQQRVLV
VERFDRRVAPNGQWLMRLPQEDFCQVEGCSPLRKYENEGGPGLKALFATLRQSVNAAVDMRTLMAAQILFWLLRAPDGHA
KNFSIQLLPRGRFQLTRLYDVMSAYPVLGDGANQWSPFEIKLAMALIGKNRHYEMHGIQRRHFNSTAQKVGYGPTAEPII
EDLLARTPAIIAAVQADLPQDFSPRVADSVLGGLAQAAKSLGAMMP
>SEQF2266_AEE67853.1 DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLAEYQVFPMPPPSQPLLTTGQLGAVLQAARKAQGLTQSALASRIGLSQSRVSHLELNAHQLSVEQLLAWCAALGLELT
IATRGSPAGSSDADW
>SEQF2266_AEE67854.1 GMP synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHQRILILDYGSQVTQLIARRVREAGVYSEIHAGDVDDAFVRDQVAQGLKGIILSGSHASAYEEGSMRVPAAVFDVGVPV
LGICYGMQSMAQQLGGTVSFSDHREFGYAEVRAHGHTKLLDGLADFTTDEGHGMLKVWMSHGDKVTELPPGFKLMASTAS
CPIAGMADESRGFYAVQFHPEVTHTVQGKAMLARFVKDICGCEGDWNMPDYISEAVARIREQVGSDEVILGLSGGVDSSV
AAALIHRAIGDQLTCVFVDHGLLRLDEGKQVMQTFTENMGVKIVHVDATSQFMGKLTGVADPEAKRKIIGREFVEVFQDE
AGKLQGAKWLAQGTIYPDVIESAGAKTGKATSIKSHHNVGGLPDTLNLQLLEPLRELFKDEVRELGVALGLPPQMVYRHP
FPGPGLGVRILGEVKHEYAELLRRADAIFIEELRNAKDPASGLTWYELTSQAFAVFLPVKSVGVMGDGRTYEYVVALRAV
QTFDFMTADWAPLPHPLLARVSSRIINEVRGINRVVYDVSSKPPATIEWE
>SEQF2266_AEE67855.1 inosine-5-monophosphate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLVQKALTFDDVLLVPAYSEVLPRDTSLTTRLTRNITLNIPLVSAAMDTVTEARLAIAMAQEGGIGIIHKNLSADDQAK
EVARVKRHEFGIVIDPVTVTPDMKVRDAIALQRQHGISGLPVVEGRKLVGIVTNRDLRFEDRLDQPLRNIMTPQDRLVTM
KEGATLDEAQALMHKHRLERVLIVNDAFELRGLATVKDIVKNTEHPYACKDSQGQLRVGAAVGVGAGTEERVEKLVAAGV
DVIIVDTAHGHSAGVLERVRWVKQNYPKVEVIGGNIATAAAARALVEAGADGVKVGIGPGSICTTRIVAGVGVPQISAIS
DVAKALEGTGVPLIADGGIRYSGDVAKALAAGAFACMMGGMFAGTEEAPGEVVLFQGRSYKSYRGMGSLGAMADGSADRY
FQDPANNADKLVPEGIEGRVPYKGSVLAIIYQLVGGIRASMGYCGCASIDDMRTKTQFVEITSAGVRESHVHDVQITKEA
PNYRAD
>SEQF2266_AEE67856.1 hypothetical protein BPTD_2584 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTPMPIYTAFAGHALLAAGPLAEVALAARRAADGDAGAAVFIYEDATGRAIDVDTRGTDAEIVARLPLPLPTPVEPEAE
PEGSPARPRGRGRPRLGVVAREVTLLPRHWDWLAGQPGGASVALRKLVEQARREHAGADALRRGRDAAYTFMSAAAGNLP
GFEEAVRALYAGDAERLAAHMAGWPADVRAYALRLAGAADLPA
>SEQF2266_AEE67857.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67858.1 putative GTP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLRRIALEAFRKFRQPVALEDLDGGLNIIVGPNEAGKSTFVAALRAAFLERYATNKPLADLAPWDMPDARPSVTVDFTH
DGHAYSLRKQFLHRARCELLIDGGAQRHEGEEAENLLARLLGYEFAGRGLSRPEHAGVPGLLWIQQGEGQTLLAPAGHAG
MHVRAALTEVSGELAATDGDRLFERVAAERAALLDARGGKPKGAYKEAEEAWARAREQCETLAAAKRQVDDDVDRLARLR
AEYERAQREQPWQAMAERAAQARQRLEGIARERQALEQLQRELAQADETLALLAEQVGRDQHDAEALAQLRNDAQAAQQA
MEPARAALERVQAGQGELAAQVAHWRERLACAQAGAERGDLAEQLARLQADAQRQQQALQQAAELAAAVAGHQAQLAESA
IDADTVARLREQERLLNELRAQQRAMATRLHHRLLPGKQVELDGVALAGDAQVLITSAARVRIDGVGELEILPGGRDLPA
LLDELRARGAERDALLGKLGVPDLAGAEARLAASEQARRDLDMARKALRIHAPDGVPALQAEQAATARRRDQLQARLQAL
PPAAAGDMPPLAEIQQALRAAEQAAEHGARATVAARTELDTQAARAQLLQAQWQAREQDYAGEQRSAQRAQRGLRLVEAR
ALRDSLARRAKEAGAALAAHQPELVEQDLQRYERSAALEREAQHRRHGELLQLQGRLEQAGAQGLGEQLLLAEADLQRLA
RRRTEYVERAEALDLLWRLLDEHRTAATQRLLEPLARRLQHYLALLFPGAQWRLDETLMPVALRRDGLEDGLDALSFGTR
EQLGVLARLAYADLLAQAGRPALLVLDDALVHADDARRDLIKRALFDAASRHQVLLFTCHAEAWRDMGVPLRELPSGG
>SEQF2266_AEE67859.1 exonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRFIHTADWQIGRQYGQFDSDDAAVLAEARLEAVARIAAQASELAVDAVLVAGDVFDTQSVSDRTIRRLFGAMQAYEGP
WVLIAGNHDAALADSVWSRARRLECIGTNVHVPQDTAAVELPLAGLAVLAAPLTQRHTYDDVTAAFDTMDSAAGLVRVGL
AHGSVADRLPEQADAANPIAPDRAQRARLDYLALGDWHGCLRIDERTWYAGTPEPDRFRGNAPGYALLVEVAAPGAPPQV
RQLEVGKYRWSHWVERLDLASDAEDLGHRLAGLQAGDVLRLELHGALSLARRWDALRRDVERAAARVRALVADSAGLVLE
PDAADLAALSVDGYVGAAAARLQAMQGDGAQAAAARVALRLLLQYQRELAEGAS
>SEQF2266_AEE67860.1 leucine-responsive regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRELDRIDRKILDILQREGRISITELAEKISLSATPCSERVRRLEREGVITGYHARINPAALGKTLLVFLEIRLSAKSGD
VFDKVKQELLYVPEVMECHLVSGDFDYLVKARLSEMNEYRRLLGEILKRLPASAESHSYVVMEEIKETLYLPVDR
>SEQF2266_AEE67861.1 hypothetical protein BPTD_2593 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRLYRYFFRGLITVLPIALTLYLLFIFLAWTEALALTLLRPFIGSFYIPGMGLALGILGILAIGYLVSKQRVQRWLLLL
EMPFTNLPVVKSIYSSLKSFADYFSPSAKTSSQQVVILRMPGNPLELVGLVTRRTLEGLPDGFTQGDRVAVYLPMGYMIG
GYTVFVPTEWVHPIQMSVEEAMRSSLIAWMARAENGAASGTVATPPAPPAPPAPPAAGGPQA
>SEQF2266_AEE67862.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIASRAGSLRRHDGSGSLSMSTAAPVPGGILIACAAAAADANQQALLQYVQGLGLADAVTLSCIRRGETAALSMTLAPAF
QARHAPGHDTTGIAASLGLRPEHDSGDLEREILLAILASPVAFPLPEAAELASAVRIRRHIVQAARRTALAFDTEQAERP
QDDWVYDEQRGFTVLPGRPLVEALRKATQPDESGRLYSFSCYRATEYVTVLGIAQELQACNPELAARLQRQWETRAVMSG
LFHDTFLREYGSLQDPLPPRYYVPGDRLWFRNPDEHSSNVEGYEGSWVFYLGSGLFNNFWKRDQPYTLAGKCVEIYHWRH
GARRNEAGKLIIDESIVEARVHATMADPQATARVLERMVRIRDPQGIYAEGGCIDATRECARWVGPGHTDIVLPDFPRPA
>SEQF2266_AEE67863.1 hypothetical protein BPTD_2595 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKMRMHAMAAAIALIGTQAAWAGEPEAKKWVDSEFQPSSLSKDQQMAEMKWFIDAAEKLKAKGVSEINVVSETITTHEYE
AKTLARAFTEITGIKVNHDLIQEGDVVEKLQTSMQSGKSIYDGWISDSDLIGTHYRYGAILPLSDYISGAGKEYTNPGLD
LKDFIGTKFTTAPDGKLYQLPDQQFANVYWFRVDWFARKDLQDKLKAKYGYELGVPTNWSAYEDIAEFFSNDVKELDGKR
VYGHMDYGKKDPSLGWRFTDAWLSMAGAADKGLPNGMPVDEWGIRVADDKCTPVGASVARGGATNSPAAVYALTKYVDWM
KKYAPQQATGMTFSESGPVPAQGQIAQQIFWYTAFTADMTKKGLPVVNEDGTPKWRMAPSPYGPYWKDGMQNGYQDVGSW
TFFKSTDANRLAGAWLYAQFVTSKTVSLKKSITGLTFIRDSDINSEFFTKNAANYGGLVEFYRSPARVAWTPTGNNVPDY
PKLAQLWWKNVATAVTGEKTPQQAMDTLANEMDQVLARLERAGMAQCAPKLNPKSDPAKWLSDQHAPWKKLANEKPQGQT
IAYEKLLQAWREGKVR
>SEQF2266_AEE67864.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFGWMVWTTPVAVFFACIALMLAGMTIWELRSPTRLRKGFLPIATTRGDRLFIGLMIAAWINLAYVGLGSKAMEWFALDE
PPTVWIGFVLSMVVLALVMRKG
>SEQF2266_AEE67865.1 putative ABC transport protein, inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAERRSSWRGIFLALYLLFAVLPLYWMVNMSFKTNTEILGSLTLWPSDFTVEHYRTIFTDPAWYSGYINSLIYVLINTVI
SLAVALPAAYAFSRYRFIGDKHVFFWLLTNRMTPPAVFLLPFFQLYTSLGLMDTHLAVALAHLVFNVPLAVWILEGFMSG
VPREIDETAYVDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSINAKPIVATMTRTVSASGMDWGVLA
AAGVLTIVPGVIVIWFVRHYIAKGFAMGRV
>SEQF2266_AEE67866.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASIELDLAYAYGPDPRGEDDYALLPLRFTFEDGGAYALLGPSGCGKTTLLNCVSGLLRPSQGRVLFDGQDVTGRTPQQR
NIAQVFQFPVVYDTMTVADNLAFPLRNRGVPQAHIRERVGRIAEMLELSAVLERRASGLTADAKQKISLGRGLVRSDVSA
ILFDEPLTVIDPHLKWELRRKLKEIHHEFKLTLIYVTHDQTEALTFAERVMVMSRGRAVQVGTPDDLFERPAHTFVGHFI
GSPGMNFLPAEWRDGALRIGSQRLEGLTAGQAEALAQGGPVKLGVRPEYLRLVAPHTPGALPVRVARVQDVGTYALLGAE
FESIALRARLPLDAALPGAGDTVWLAVLNRHTCFYRDEELIR
>SEQF2266_AEE67867.1 glycerol-3-phosphate regulon repressor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLNPRQSALVELVRTQGSATIEALARHFDVTLQTVRRDVNLLSEAGMLSRFHGGVRIESSTIENIAYRKRQGLHAEGKR
RIAEAVARAVPDGCSLLINIGTTTEAIARALLRHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGIVGEATLDF
IRQFKVDIGLIGISGIEADGTLRDYDFREVRVARAIIEQSREVWLAADSSKFQRQAMVELVHVSRIHRFFTDTQPQEPLA
QVLQDAGVRCDVAAQSAGAAAA
>SEQF2266_AEE67868.1 putative glycerol-3-phosphate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPTLAPIDPPARAQLLTDLQGAPDWDVIVIGGGATGLGTAVDAAARGYRTLLVEAADFAKGTSSKATKLVHGGVRYLA
QGNISLVREALHERGLLNRNAPHLVWPLGFVVPAYSLLDQPFYGVGLKMYDMLAGKLNLAPSRWLSRGETLRHAATVAER
VNGRALRGGILYYDGQFDDARLAIALMRTLYDLGGVALNYARAVGLTRTDGRVDGVTVADALGELRVTLRAKCVVNATGV
WVDAVRRMDDPAAQTMVAPSQGVHLTLPRDFLPGEDAILIPKTDDGRVLFVVPWNGHTIVGTTDTPRTDLPLDPQAGQNE
IDFILATAARYLSRKPTRADVTSVWAGLRPLVKATGEASTKSLSREHTIVVSKGGLVTVTGGKWTTYRKMAQDVVDTAIE
HKLLAAAPCRTSELPLHGAPADGQPNGAPHGTPDSYYGTDLATLRALPGADRMLVKASALTEAHVRYAARHELARTVEDV
LARRNRALFLDAEAALLAAPEVARILAQELGHDEAWSRATLAEFEAVAAHYRLA
>SEQF2266_AEE67869.1 IclR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTTTLKGLTVLEALVRSGESRSAGELAQELGLVRSNVHRTLQTLAHAGYVEAIADSAKYRPTLRLWELGNVVVQRFDIR
KQAYPTMQALAAHTGETILLAVRQRLEVCFLDKIQTEKPVGTFVLLGARAPVHCTAPGKAILSRCSHGELQALPETFERY
TAKTITTREALIAELAIARERGYAINTSEWREGVNSLGVPITAPGGEALGAISVTGPDTRVTLKKLDGYAPVLVEAAREL
SRRIGG
>SEQF2266_AEE67870.1 hypothetical protein BPTD_2605 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGAAPTTREETGKMKTSMHFVRTWCSALCALVVLAGASLPARADYPTRNITLIVPFPAGGSVDMLARLFAAHVGAPFKD
KVVVINRPGASGVVGETAMARAEPDGYTIMFQGAPAAINAEIYKQPLYGAKDLQPVGLIMTAPFVVATYPESEIKTLADI
KTVAAGMPNGLTTAEAGISTRLVAEMYRLITKDKLYLVPYNGGPAAAMSLVRHETGLYFSDLTSVTSYILSGQFRALAVT
SAKRVKDHPTIPTTAEAGVPEFTPQTWFGVFTRTGTPPEIVQALNQAVDGFLRNPAVIQKIEQVGGTPTHMSVAQFEDYY
GRQRLLWRDVIKRAEIPLQ
>SEQF2266_AEE67871.1 hypothetical protein BPTD_2606 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAQEVKEVDVVVVGGGLAGHSAAIEVSKAGKSVAVLEKMPDIGGSTVLSGGSFAFAGTPEQAGQGIDDSPERLRRDLLA
CAAREQARELIDVYVAHQLDAYRLLRHLGVVFDPIQFSSNQSVPRSHPTSPARVMALMNEHLRQQYGVAVQTSAPVSALH
RDPASRRIVAVTARHADRAVEYRARQGVILASGGFSQSPELMSMLAPHLENVLLTGGAGNQGDGLKIAWAHGAAIADIDA
LVPTFGALQEAVPSEPNTILLAYYRGGIVVNSTGERFVDESKSYKAIGKASMGQAGARGFQIFDQKVMDLSVRAPKTLDF
QRAFDLGRVTAADTIVELAERIGIDPQALARTVSEYNDGIRQQRDSFGRRHLSNQVGEAFPLEHPRYYAYATVPYMATTY
AGIKVDRRMRVVDVWGKPIDGLYAAGEIIGGAHGRGYMTGASLGKALIFGRVAAWSAISG
>SEQF2266_AEE67872.1 hypothetical protein BPTD_2607 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIVDMRLRPPIPGFARSTLYQAGPKTSHPDFPVEPSVGQCSLPLLISEMDAAGVAVGVVPGRYSMEPFGIVSNDELATLF
ADHPGRFVGFMGLDLGWPMQRMLDEIDARVGTPGFRGVALEPTISADASFCGMNDKRLYPIYEACVKHGVPVSVTLSAVL
QAFTKRPYEHSNPVQAYQVAIDFPGLDIVIAHAAYPWVMEMIGVCLTCPNVWLSPDLYLTNVFPGAQEYAKAAATYLPRR
TLFGTGYPAKPFKPMIDAYAAWGWPQDVVAAILGGNAARLLRLADQ
>SEQF2266_AEE67873.1 hypothetical protein BPTD_2609 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCLAVLALHAIPGLPVLIAANRDEFHARPTAEATRWPGSPSIYAGRDLQAGGTWMGVSDHGRYAVVTNFRDPRNIQPDAP
SRGALVEAFLRGAASAQEYLHDVHARGARYNGFNLIVGDAGGAWYCSNRDGAPRRLAAGVYALSNHLLDTPWPKLARTKA
AFERIIAAAPQPDLAALYAALADPTPAADHELPATGLALERERLLSSPFIVSPDYGTRSACILALHDDGRGELHERRFRP
DGAIAGQTDLDFPWRAAHAELHRASCV
>SEQF2266_AEE67874.1 hypothetical protein BPTD_2610 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKQFRLARAAGPRARLTGELSMNKRHERAWMAAALAAGSIALGGAVQAQGALPAVQQQGSVQFVTGGVGLDESEAMKAA
SKDYPLALTFAARGDGRAGLYLADVAVQILDRTGKPVLDAKADGPYLLAKLPAGTYRVKATSGGVEQTRQVSVRPGSTAR
AVFEWKD
>SEQF2266_AEE67875.1 hypothetical protein BPTD_2611 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVMQKGLMAALLLGSAFASAAAADSFPQRPVTIVVPFTPGGAVDIVARTVAAGLSEQWSQSVVVENKAGAGGAIGIQSV
ARAKPDGYTLLLGSVGPVTVNPSLGPVGYDVAKELAPVVLLAKTPAVLVTLPSAPVDDVAQFVKQAKAQPGGLNYGSAGT
GNITHLVSEYFLSSAGLAANHIPYKGSAPAITDMLGGRLDFMFDVVPTAQPLIKSGKYKALAVTTIKRSDVLPDVPTLDE
LGYKGFDVSSWFSLMAPAGTPDAVIGQINAAVNEVLRSDASRERLAAIGAYSAGGTPEQLGEFVRSETARWKKLIDERGI
RAN
>SEQF2266_AEE67876.1 dihydrodipicolinate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAARFPGYVPAGVIPAALMPFNEDLSIDEKSLRAHIRDLASVRGISALCVNGVSQEIPGLTLDEQRRALDVMADEVGDQV
PLMHGVYAHGPLDAARIARQAEAGGASCLLVFPPAVFVRGAAMLPEMTLGHYKAIADATDLPLIVFQYETSTGMAHPLDT
LVKLAEAVPSVMAIKDRSNNPIEHERNIRVLQSLARPVNVLTTHSAWLMPSLVLGCNGILSGSGSVHADLHVALWEAVQA
NDLAAARAINDQIYPMASCFYSAPTLDMHTRMKEALVMLGRLPSGRVRLPWVDLSDAERARVRAALVQAGRLPA
>SEQF2266_AEE67877.1 IclR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNIPASAPRDTAQSLRRSIEILKALSAPMKRGFSLSELSRMAGLPHPTVLRLLRHLTGLGMVAWDPATKIYRLGTLTFE
PGLAAAEHCDIRGLCGDSLDRLQAETQDTCYLTMRSGFDAVCIDRREGASPIRVLTLDIGSRRPLGVGAAGLAILDCLPE
EEAETVIQASESKLDRYNRMSTDIMRMLLQETRERGYAVCGNWVTLGVTAVAVPICIEDGRPIGSLSVSAVSHRMPADRW
PGIARALRAEMHEIHRKLQGPSSRPGYGG
>SEQF2266_AEE67878.1 hypothetical protein BPTD_2614 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNATAAFLLAAALLPLVPAIAAKAGGRRYDNNDPRPWLAGQAGWRARANSAQANTFEALPFFFAAVLYALHTQAPAATLH
VLMGAWLVARLVYVALYIGGRGNLRSLIWLAALLVNVAILLAGS
>SEQF2266_AEE67879.1 hypothetical protein BPTD_2615 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEARAGLFARRRYLPALAVLYAALWLALAIEPHDRSDWLLENALVLGFGVALYATRRWFVFSRVSYTLIFLYLCLHAVG
AHYTYSLVPYDAWWQRLTGHSLDQLLGWERNQFDRLVHFSYGLLLAYPIREIFLRVVDVRGFWGYLLPLDVALSTSALYE
LIEWGAAEFFGGELGVAYLGTQGDIWDAQKDMALAGLGALIAMLLTALFNRGARRDPARDWVDRMKPGHT
>SEQF2266_AEE67880.1 peptidyl-tRNA hydrolase domain protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLHVLGSLYLDERELDFDMIRAQGAGGQNVNKVSSAIHLRFDVRASSLPDSVKETVLALADRRISSDGVIVIKAQTHRSQ
EKNRADAVERLLALLREALRPVRPRRATRPTLGSQRRRVQRKVQHGETKRLRGRVRDD
>SEQF2266_AEE67881.1 hypothetical protein BPTD_2617 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAYSVKELFKTLQGEGAQAGRAAVFCRFAGCNLWTGRESDRAGAACTFCDTDFVGTDGQGGGKFADAAGLADAIAACWGE
HPADRYVVFTGGEPLLQLDEALLQAVHAQGFTVAIETNGTLPPPPGIDWICVSPKGRAPVVVERGHELKLVFPQADARPE
AFAHLAFEHFFLQPMDGPARAAHTTQAVQYCLDHPQWRLSLQTHKYIGIP
>SEQF2266_AEE67882.1 hypothetical protein BPTD_2618 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISVTRRLEFDAGHRIPDHNSQCRNLHGHRYVLEVTLSGDVVQAPGASDNGMLMDFSEIKRIARAHIVDVWDHAFLVYEG
DHAVRGFLDTLPDHKTVVLDRIPTAENLASIIFATLAPHYHGHYGADLRLTRVRLYETPNCWADCGS
>SEQF2266_AEE67883.1 hypothetical protein BPTD_2619 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRRRFLTAAAAGAGSAVLAAPAVAQEAPTIRWRMPSSFPRSLDTVWGAAEAITARVSELTDGKFAIRAFPAGEIVPPLQ
VLDAVQNGTTECGHTAGFYYMGKEPALVFDTGVPFGLTPRQHSAWVLQGGGQALIDELYAGFNAIAIPCGNTGAQMGGWF
RKQMRTPDDFKGLRIRTPGLLSMVYQKLGAIPQQIAGSDIYPALEKGSLDAVEFVGPYDDEKLGFAKVAQYYYGPGVMEL
GANLCLNVNRESWQSLPPRYQVALRAACAMAGEELLAKYDAHNIPALKRLVGQGAKLQSWSPEIMAAMQKATREVLEEYA
GKNPRFAKVLESWRAFRADQLLWASVNDGAAERYLLATRENGL
>SEQF2266_AEE67884.1 class II aldolase/adducin domain protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MESMMSSSYTVQDKDVLRARVDREIESRVSEPQWTRAQKMALACRMLAEQGHWHGGLAGQITERGDEPGTYWTLPFGVGA
DEARASELILIDEDLNPLDGKSLPNPANRFHIWIYRHRPNVQCIVHTHPPAVSALSMVGEPLVVAHMDATPFYNDCAYLP
QWPGLPIGDNEGEVISAALGEKRAILLANHGLLTAGSSIEESAVMALWMEQAAMLQLRARAIGPVKAVPGELAQESHDFL
VKPKIQSLTFAYFARRVLRAAPDCLD
>SEQF2266_AEE67885.1 putative transcriptional regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASCVLTHSPPPPMTAKSPPVPAPSPEQIGLRIRALRKRQKRTLAWLSAQCGLDKGFLSRLERGEKSASVGTLHTVAGAL
GSSLSALLGEADPQTEIQIVRAADRHRMTTAPGPGEHIYEAITLGSSHSGLSVMVVEVGTHGAHTEAHHGGDELIFVLDG
RIRVHFGGHTVLLERDDSVRFPGYLPHSLSAEGRKLARALVVIASG
>SEQF2266_AEE67886.1 MarR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTATDNRLMAMTANLMVLSRAYRSAADKALADFGLSQATAWPVILTGRLGDGVRQGALAEALGVEGPSLVRVLDQLVAA
GLIERREDPQDRRARTLHLTPAGQSLREQVENVLVQLRRQLFQGIADSDLETCLRVFDSLKSALGRESAAAREDYRP
>SEQF2266_AEE67887.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67888.1 adhesin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAFSFRLVYSECRAMYVPVAPRRRAARRGRGGAGRRLRRALAAAGAALACGAMAAPHRSPSGVPVIDIVAPDANGLSHN
RLREFDVGPPGLVFNNSLTEGRSQLAGYLNRNPGLRQAATAILTEITGTRPSRLHGALEVFGRRADLIVANPNGLSVDGL
VTLNAGRLTLSTGRPVTEGGRLRLDVDAGHIAVAGAGVNTSGLDYFDLVARTVSLDGPVAAGAGARAAALAVVAGRNRFE
PANGSVTPLAGSAGSGGSGYAIDGTAAGAMYGARITLLSSDSGVGVRQRGAVSSPGAITVSSRGEIRLREATAGAGHLAV
DAGGAVAATALASGGAMRIAGEGAVQVGTATSGDALSLHAGGALQAQRLRADGPLDARAQGALRVGAADSLAGISIDTAR
RAELGTLQSRGALSVRAGGEVALEAAKTDGALRVDGAGVTLGTGSAGQARIDSSAFVHVGALAAVGAQAHGGGVEIHARD
DVRVGEGRRGQGVAVRGDITIDATNGVLLLRNDVTADQGMVAASARAAVLEHASLRSGITPRARQARPDGGRPSVALRVQ
DVLFLNGTLRALDEAGAVVPGRHIEVVDGWVRIADEIAETVHDEESVVSDAVIAARSGAVLVEAGTFVNFGGGVGNGGKQ
GAGSDLTLRVRGDARNKGYISAGRRGELQVGAVLKNEFLIDSAGTQRIEAGRIENLGTIQSLGGEAGAQGLVIKAAESVA
QAGVVAAERGVEISGRTEQRPVVAASARSSIAGERLLVQVASWDNRGSLALGQGGMRAEIAGRYAERGTASLDGEYAVSA
QTIGIAGALRQGRGATALVARQEMTLAGRLGLAGPVRLDAGGALSNTGMASACDRLAVTAASFDNAAGGLLSAGSVDIAV
RGAARNAGRLLSNQDIVLGAASFYNAAQAEARGNFAATVGAALENRGSLKAGGDLTLRAARIDNHGVAAAGHDVGLRSPQ
LRNSGQVAAGHDIRIVEGRELRNPGRLDARNDIELAVDDYANTGSIHADGNATLALARGTDRDLVIDTPDILPVALGALR
VKARSLRVNTEIGVPGSLDVQTQGDIDNRQAIVAGGNLKLASASGALNNAAGALLWAGADMALRARRITNGKAALIESGG
GMRLAARDTLINDLGSVRAGGDLRLDAARIENRATLTGHVRHAGENTVGGGGYGFWRGLAYLDYRLRYGNGAAVAAPFYD
VALQAGQSRIESGGDLYVNRELGPGRRGHLRNEGTIQAVGHAYIDGDVENRSLSREVSLADYLRTPLAAAIELKVTDSRA
ALTPAYWSFRTLYELLDYLVGENRWETIWGFYDTYTDWATNTLKNLDLGYVSPPPPQAPPVPAKPELSLPDGSADSPAAR
QALADYREALREYEAARAQARAAEAYGEAQRQVREILAARYGADRLAGLDTETAALDRVIGDYAAALARLGDDEPARAQA
LRKQYEQAVDRIQLAPATPGRALLARALSAALGADWRAQPHPVLVQRWNDFKAGRRGAPLTFYPQAQTVLAAGKGVTLSD
GYLRNGENAARNRGRPDTLRIGEHKVETSGGSFDALRGLGLETRLDIDGALEAVLANRHLFARVGDQPAASSVAVPAAMP
APQGDADPAALRDVPRKPVAPAVALPQPLIETRIKYLDQGGFYGSGYFFEQIGYQPDRATRVAGDNYFDTTLVREQVRRA
LGGYESRLPVRGDALVARLMESAGTVGKALGLKVGVAPTAQQLKLADRDFVWYVDTVIDGQKVLAPRLYLTEATRQGITD
QYAGGGALIASGGDVTVNTDGHDVSSVNGLIQGRSVKVDAGKGKVVVADSKGAGGGIEADDEVDVSGRDIGIEGGKLRGK
DVRLKADTVKVATSMRYDGKGRLAARGDGALDAQGGQLHIEAKRLETAGATLKGGKVKLDVDDVKLGGVYEAASSYENRS
STPLGSLFAILSSTTETSQSARANHYGTRIEAGTLEGKMQNLEIEGGSVDAAHTNLSVARDARFKAAADFAHAEHEKEVR
QLFLGGKVGAGGYEAGFSLGSESGVSSHAGRGAASSASARVGWESVWEKSASSRKTYRNADLRLGDGLLAVGGVLDFGGA
DINRDRYGGGAEGEPGLRLRGGEVRTTKYVDTEHTVRSGGRVGLELGVDGSVNPQVTSSRLGRSLTQAGDGRGIDGGLMF
GQALSTAFQSVMADTISSTLSASLRTEWWNESRNATSENLTHVGGNARIESGAGDMALAGVRFDGGREVDLRSAGALRMR
SAESREQRTRDAHSLSLDARLAMGANLVKGDAYVRGTAGLSGHHEHAASERHTHGRTGVRAANVHLQAARDLVMQGARVQ
AAQGARVEVGGALSMASVQDVHDESHTSADWMAAAGAHASTGNGFKPQPVAQVGVSFSHGHDRGAIVAQRTGIAAGGPLS
VRVAGDAQLIGADLVSTAGQGRVQVGGRVRAEQLADRRDRDGGSAGVSAPALLSTSTRPTLVVSGGRLERDHYDAVHRSV
IAVSPGGLAAADGVSGHLQRDPVTGLRVLRDEHWAGGDMAFTLGSVPKFDRGKYAPPRPDTSAPGGSPFSLHR
>SEQF2266_AEE67889.1 phosphoribosylformylglycinamidine synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLVQHLPGSSVLSAFRRERLLAQLKKAGLPVADISARYEHFIHTDSALPAEQQARLAQLLDYGTPAAETPAKSLELLVI
PRLGTMSPWASKATDIAHNCGLDAVRRIERGVRYALTPERGLLGAKSFDADMLARAADCLHDRMTETVVDGAFDGQALFE
TLAGKPMRTVAVQAEGRAALEQANVALGLALSEDEIDYLAQSFGDLGRDPTDVELMMFAQANSEHCRHKIFNAQWVIDGQ
EQSNTLFGMIRATHKAQPAGTVVAYSDNAAIMEGGPAQRFQAGVPGVAGEGAQAARYVRRDTTVHTLMKVETHNHPTAIA
PFPGAATGAGGEIRDEGATGRGSKPKAGLTGFTVSHLRFDDALQPWENDHHGLPERIASPLSIMIDGPIGGAAFNNEFGR
SNLLGYFRAFEQTAGGTRWGYHKPIMIAGGLGSIDAGLTHKEVIPPGALLIQLGGPGLRIGMGGGAASSISMGSNSAELD
FDSVQRGNPELERRAQEVIDRCWQQGERNPIVAIHDVGAGGLSNAFPELVNDAGRGAIFDLKRVPLEESGMSPAEIWSNE
SQERYVLSILPQDLERFDAIARRERCPYAVVGVATEERQLRVVDGEGLPGLDTIRAQGENEVRPVDVPIDVILGKPPRMT
RDVQRLPGVSEPLDLAGLDLTEAAYRVLRHPTVANKSFLITIGDRTVGGLSSRDQMVGPWQVPVADCAVTLADFEGTRGE
AMSMGERTPLAMLDAPASGRMAVAEALTNLAAADVARLEDIKLSANWMAACGVPGQDAALYDTVSAVSELCQSVGLSIPV
GKDSLSMKTSWDEVGEQRQVVAPVSLVVTAFAPVGDVRASLTPQLRTDAGDTVLILIDLGRGRHRMAGSILAQAYNQVGE
TVPDIDAPQDLRAFFVTIRTLAEAGTILAYHDRSDGGLFATLAEMAFAGRTGVSVNLDMLTFDPQSADWGDYKIRPEQVA
VQREELTLKALFSEEAGAVIQVPASQRDAVMQVLRGAGLSAHSHVIGGLNGADEVEFYRDGRKVWSQPRADLGRAWSEVS
YRIMARRDNPACAQAELDVWNDAKDPGLAPRVAFDPQEDVAAPFIGTGKRPRVAILREQGCNSQVEMGWAFDTAGFEAID
VHMTDLLSGRIDLAGMQGLVAVGGFSYGDVLGAGEGWARTIRYNDKLSDQFAAYFARPDTFALGVCNGCQMMAALAPMIP
GAEHWPRFTRNQSEKYEARLSLVEVTASPSIFFAGMEGARIPVAVAHGEGYADFSQQGDAARALMAVRYIDNHGAATETY
PFNPNGSPGGLTAVTTADGRFTVMMPHPERVTRNVMMSWAPAQWGERDAGGAFSPWMRIFRNARVWLK
>SEQF2266_AEE67890.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPLILPALCSTLLPMHRPDASDEPVEPIIPPEADPAVKVPLALEDWLAVILLAALAIITFLNVLVRYLTDQSFAWTEEI
SVFLLIVLTMVGASMAFVRNHHIRIEILADNGSPRRQYLMALTAHSLVVFFFALLTVLSARLVYDEFRYEETSPAIGVPT
WWYSIWMPLLAAVITLRVAGAARRLIARHKAET
>SEQF2266_AEE67891.1 putative membrane permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIAALLFAVFITLMLIGVPVGVALGLGGTVAIVLSNLDVSWFGLLAVPQNFYAGLAKYPLLAIPMFVLVGSIFDRSGVAR
RLVDFAVALVGRGPGMLPLVSIAVAMFLGGISGSGPACAAAVGAVMIAAMSRAGYPAPYSAAVVAAGAATDILIPPSVAF
IIYSVLVPGASVPALFAAGMVPGILAGFALIIPAVWLARHHSMGAREAHLPRPPLWASLREASWGLAAPVLILGSMRMGW
FTPTEAAVVAVFYGLFVGMCIHRTIKVRDLFVILREAAELSAVIMLVVTLAGIFAWALSTLSVIDPITHAIVNSGLGEWG
VLALLIMLLMTVGMFLDGISIFLIFVPLLMPIANAYGWDPVWFGVILTLKVALGQFTPPLAVNLMVSCRIARVPMESTVG
WVVWLLGGMFLVLVAVLIFPQLALWLPHRLGY
>SEQF2266_AEE67892.1 hypothetical protein BPTD_2629 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKFRNIVGAALCAAFALGVAPAQAQNYKSEYKLSIVVGTTFPWGQGAVIWSDLVRERTEGRINIKVYPGTSLVQGDQTRE
FTAIRQGVIDMAVSSTINWSPQVKQLNLFSLPFLMPDYAAIDALVQGEVGKEVFKLIEKAGVVPLAWGENGYRQLSNSKH
EIKTPADMKGLKLRVVGSPLYIDTFTALGANPTQMSWADAQPALASGAVNGQENPLSIYTGSKLYTVGQKYLTLWNYVAD
PLIYVVNREVWNSWSEKDREIVRQAALDAGKQQIVIARKGVTPEDPSLLKEIAGHGVTVSSLDAGQHAEFVAATKPVYEK
WKKQIGAELVDLAEKSIAARKK
>SEQF2266_AEE67893.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE67894.1 fimbrial protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAKTFLLGAALAGVALAAHAEDGTIVITGTITDQTCTIEDPSPGYIKVVHLPTISKSALKNAGDVAGRTRFDIKLKDCP
TTVNTLKLYFEPGPTTDYGTKDLKAYKQAWYVDAATLLKSPPSVTEAKGVQIRLMNLNGKQIPMGETEPNQHAAAFSGTM
QAGQAKKSFTLHYLAGYVKKASGEVEATMLTTYVGFSVVYP
>SEQF2266_AEE67895.1 phenylacetate-coenzyme A ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTTMSKPGLDPIEHASRDEIAALQLERLKWTLSHAYQNVPHYKKAFDAAGVHPEDLQQLSDIARFPFTTKQDLRDNYPF
GMFAVPRERVSRVHASSGTTGKPTVVGYTARDLDNWANLVARSIRAAGGKPGDIVHVSYGYGLFTGGLGAHYGAERLGCT
VVPMSGGQTEKQVQLINDFRPDIIMVTPSYYCNILEEQRRQGMDPRQSSLRIGIFGAEPWTGQMRADIEAEGGIDAVDIY
GLSEVMGPGVASECVETKDGPVVWEDHFYAEIVNPDTGEPVADGEPGELVFTSLTKEAMPIIRYRTRDLTRLLPPTSRSM
RRIGKITGRSDDMLIVRGVNLFPTQVEELVLKIAQLAPHYQLVLSRSGNLDELEILTEVRAEFSTLTEAERAGLGKQLQH
AVKSYIGVSARVQVADTGFVERTLTGKARRVIDKRPR
>SEQF2266_AEE67896.1 phenylacetic acid degradation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAHVPAVDVPSDPHELARAVGATMYAGDAASQGLGMTVVEIAPGYAKLSMPVRADMLNGHKTCHGGFIFALADSAFAFS
CNSRNVSTVASGCTIDYLAPGLEGDVLTAVAQERSLAGRTGIYDVTVTNQQGRSVAVFRGRSYRIRGQVVGEPPQD
>SEQF2266_AEE67897.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTYQDILFELAGGVARLTLNRPDKLNSFTARMHCEVADALGRIEREGARVLVLTGAGRGFCAGQDLSERRPTADGAPLDL
GETVEKFYGPLVRRLAALPLPVVVGVNGVAAGAGANLALAGDIVIARESASFIQSFCRLGLIPDTGGTFALPRLVGRARA
AGLALLGNKLSARQAQDWGLIWQCVADDEFDSALDGLAAHFAQAPTKGLAFTKRALQASLGNDLSTQLDLERDMMRELGR
SADYAEGVAAFLDKREPQFKGK
>SEQF2266_AEE67898.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQDFFERHQPMLQKALEAAAQRGYWSPFPESPSPRNYGETAAQDGQAAFEALRGKPFALDLPQASGAVGGEVSPFGFEL
GITYPQVAPEALVAASSKALEQWRRAGPRAWVGVSLEILQRLNRRSFEMAHAVQHTTGQAFQAGGPHAQDRGVEAVTYAW
QEMSRIPGVALWEKPQGKHDPIKMEKRFTVVPRGIALVIGCSTFPTWNGYPGLFASLATGNTVIVKPHPGAILPLALTVQ
VAREVLGEAGFDPDVVLLAAHPAGDDTAQRLALDPAVRIVDFTGSSANGNWLEQNARQALVYTEKAGVNQVLIDSTDDLK
GVARNLAFSLALYSGQMCTAPQNIYVPRDGIQTAEGRVGFDEVAAALGAALDKLAGDPAKAVELTGAVQNDATVARIGKA
RQLGLPVLADSKALAHPQFEQARVHTPLLLRADAGNDALGQEWFGPIAFVVATDSTAHSIELAGASVRQHGALSLSAYTT
DEAVASRVQDMAEHSGVSLSLNLTGGVFVNQTAAFSDFHGTGANPAANAALSDSAFVANRFRVVQTRRHV
>SEQF2266_AEE67899.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67900.1 phenylacetic acid degradation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNALPRVPAGQVLAWLESVPDPEIPVLSVVDLGVVRDIGWDGDTCVVTITPTYSGCPAMREITHDIETTLAGHGLASVRI
ETRLAPAWTTDWMTARGRAALRQYGIAAPVERAVDISGISRRRAAPAIECPHCGSLDTRLISHFGSTSCKALYRCVACRE
PFDYFKPH
>SEQF2266_AEE67901.1 phenylacetic acid degradation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKSLFEYLLRLGDTTLVLSQRLGQWCGHGPVLEEDLALTNTALDLLGQARMWLTLAGEVEGAGRDEDRLAYLRDAPQFR
NLLLVERPNGHYGDTMARQFLFDTWHYFLLIRLARSADERVAAIAAKALKEVTYHARRSADLVVRLGDGTALSHARMQAA
IDAAWPYVGEMFVDDAIDQDLAARGIACELSSLRDEWLAQVREVLDEATLAMPQEDEAFHPAHRGGRQGRHTEHLGYILA
EMQHLQRAYPGASW
>SEQF2266_AEE67902.1 phenylacetate-CoA oxygenase subunit PaaB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKDWPLWEVFIRSQHGLAHKHVGSLHAPDTEMAINHARDVYTRRNEGLSIWVVRAADIVASSPGDKEPLFEPANSKVYR
HPTFFPMPDEIKHM
>SEQF2266_AEE67903.1 phenylacetate-CoA oxygenase subunit PaaA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYAQLVETGVGKVKHVDQLEGPEQAFQRRIDDGVRIEPKDWMPEAYRKTLVRQISQHAHSEIVGMLPEGNWITRAPSLKR
KAILLAKVQDEAGHGLYLYSAAETLGVSREDLIDDLHTGRAKYSSIFNYPTLTWADIGMIGWLVDGSAIINQIPLCRCSY
GPYARAMVRVCKEESFHQRQGYDLLIQMCLHGTPEQKAMCQEAFNRWWWPALMMFGPSDADSPNSAQSMQWKIKLFSNDE
LRQKMVDQTVPQAEYLGLTVPDPDLKWNAERGHYDFGAIDWDEFYAVIKGHGPCNRERLAARVKAHEDGAWVREAMAAHA
DKQARRKAA
>SEQF2266_AEE67904.1 phenylacetic acid degradation operon negative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASTPSPLDRFLSRLLKNDPPRAKSLCVSLLGDALAPHGGAIWLGDLIELLAPIGINERLLRTSVFRLVAQGWLQSERHG
RRSLYLLSEHGLRHTAHASQRIYDGPARAWNGEWTLVALPRAGNNGLAERGELRRELLWEGFGMVAPGLFAHPQTEARAA
HDILEKLGIPDKALVLSARDQAGAGGLPIASLAGQCWNLDEVADQYRLFSRNFGPVEKLLDPPPTPAQAFAVRVLLLHNW
QRIVLHDPQLPTPMEPDGWPGNAARALCRRIYWQVFDASERHLDAVAGRENARYRPAQADIMGRFGGRP
>SEQF2266_AEE67905.1 hypothetical protein BPTD_2643 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDIERVEQVRAVERLAHRRGLALMPRAGLAAADFVAARLPAGAQVLALAGPGNNGGDALVAATLLQARGYRVAVVMPAGP
ARLPDDARRAWQDWCAAGGQASADLPAHAPALVIDGLFGIGLARPLDGAWQGLIDQVNAWRVPVLALDVPSGLSAASGQP
LGDPPGRPVRATWTLSFIGVPAALRAPGAAAWCGEQYLSLLGLTPAFLAEAVGPCGQATATAARRSGP
>SEQF2266_AEE67906.1 oligoribonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAANENRLVWLDMEMTGLDPEKERIIEVAVVVTEADLTVVAEGPVLVVHQPDSLLDAMDNWNKSTHGKSGLIEKVKASTL
GEAQAEQILLEFLAEHVPAGKSPLCGNTISQDRRFMYAYMPNLERFFHYRNLDVSTLKELARRWAPAVYKGFDKKSRHEA
LADIYESIDELKYYREHLLKV
>SEQF2266_AEE67907.1 putative integral membrane zinc-metalloprotease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPVPLFTLFFVVLLLADIGVRLWLATRQIRHVAANRQSVPPEFAPRIGLHSHQRAADYTVARVRLGMLERVYDAAILV
ALTLLGGLQFIDLWLGQLTQHDFLRQLLLLACVPLLLGLLGLPFTLWRQFRLEGRFGFNRMTPALFFSDAVKGVLVALVL
GLPLAAAVLWLMAGAGAYWWLWAWGLWLGYNLLLLLIYPTFIAPLFNKFTPLNDPELAGRIRQLAQRCGFALNGLFVMDG
SRRSAHGNAYFTGFGKSRRIVFFDTLLARLNGDEIEAVLAHELGHFARRHIIKRLALSFAGALVFFAALGWLARQPWFYE
GLGVLPNLGGRNDAMALVLFFLVVPVFTFMLTPLASWYSRRDEFEADRYAAAQSSPDRLVSALVKLYDDNAATLTPDPVH
SAFYDSHPPAAVRIRHLMAGA
>SEQF2266_AEE67908.1 ribosome-associated GTPase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSNQAEGLIIAAHGRHYTVELADGSLRQCFPRGKKNGPAVGDRVRITPQGRDEGAIEAVLPRRNLLFRSDEMRVKQFAA
NVDQLLIVVAVEPTFADDLTGRSLAGAWSADIEPVIVLNKIDLPNGLDAARARLEPLRRLGVPVIELSAQDHAMVHERLA
PRLAGRTSLLLGQSGMGKSTLLNTLVPHAQAATREYSAALDMGRHTTTSTRLYHLPEPGGDLIDSPGFQAFGLQHLNGEQ
ILRGFPEFAPHIEHCRFYNCTHRHEPGCGVLAALQAGQIDAGRYALYLRILDENAAARPY
>SEQF2266_AEE67909.1 ABC-transport protein, inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATMFKLILRRVVVAIPTLILVSMIVFMLQKILPGDPVLTLAGEERDPAVLDYLREKYRLNDPLPVQYGAWVAQVLQGDL
GKSMRTDVPVLTLIAQKLPVTLQLAVMAMAFALLVGIPLGIVAAVRKGTAVEMGANMAALSGMSIPNFWLGIILTMVVSV
QWKLLPASGYVSPAEDFWLSIKTMLMPALVLSTAIAAYLMRHTRSAMLEALSADYVRTARAKGVAPRKVVLRHALRNALM
PIVTLVTLLFGELLAGAVLTEQVFTIPGFGKLIVDAVFNRDYAVVQGVVLCVAVGFIVMNLLADILYILVNPRLRHA
>SEQF2266_AEE67910.1 ABC-transport protein, solute-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKTKSLSMMMGAAVLAGAGGAALAQDLRIGLQEDPDVLDPHRARTYVGRIVFTSLCDKLVDIDEKLQFVPQLAQSWSFS
EDNKTLTFKLRTDVQFHDGSKFDAAAARANLGRAMTLQDSMRKGELASVEKIEAPDPATLVLTLKRPDATLLAQLSDRAG
MMLSPKAFEGDAAAVGRKPICSGPYKFVERVQNDRIVLQKFDQYYGAKDYHFDKLVFLPIPDTTVRLSNLRAGGLDILER
MNPSDAPQVKNDASVQFMPVSGLGYQEVFFNTGNGKRAETNPFKDKRVRQALALSIDRAIINEVVGGGIFDPASQPFPPA
SPYHSDKFPVPKRDVERARALLKEAGLQKVKAEFAFGNNTTTSAIAERIQAMAAEAGFELSLRPTEYAAMLNEAQAGNFE
MIMRGWSGRVDPDGNIYQFVTCKGALNDGRYCNAEVDKLLAEARTVPDQAKRKAIYDQAQALLQADTHDIYLYYQPWPFV
LGKNVRGFKPYPDGMVRLKGVTLVK
>SEQF2266_AEE67911.1 putative gamma-glutamyltranspeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAFNWVNPYPSTRIPVFARNVVSTSHPLAAQAGLRMLLKGGNAVDAAIAAAATIVLVEPVSCGLGGDCFAIVWDGRQLH
GLNSSGVAPAAWNVEYFKRKYGTGPDGLAVQPKRGWDAVTVPGVVAGWAALHEKLGKLPFEQLFEPAIEIAERGYTVPPV
VAHKWAAAAAELGEQPGYAQAFMPEGRAPRVGEHFLFPDAAYALRRIAASGGRDFYEGELAERIAAFSKECGGAMTLDDL
RNYRPEWVKPISRSYRGYELHEIPPNGQGIAALIALGICERFDLADMPVDSVQSQHLQIEAMKLAFSDLYRYVADPRSME
VTPQQMLDDAYLDSRARLIDPDRATHFEAGRPHAGGTIYLTAADENGMMISFIQSNYMGFGSGVVVPGTGISLQNRGVGF
SMNPASANVVEGGKRPFHTIIPGFLTRGGKPVMSFGVMGGDMQPQGHLQTVIRMLDYHQQPQAACCAPRWKVNRDFTLDI
ESTMNRATVEGLKNLGHRLKAVDDPYMDFGAGQFIWRMAESDNDLGYVAASDSRRDGQAVGF
>SEQF2266_AEE67912.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSIRFLRTFLAVAQHGTFSEAAEQVALTQAAVSFQMRALEAELGRELFDRGGRLAILNAAGRELVPEIKRLLDLYDHLK
APRNVPGELAGSVSVGAIVSCMGTLSKVVSQLKRDHPALDVRVFSGKASELAGKVEAGELDAALVVEAGRKMASTRWTPL
YEEPLVVLAHPHAPGADAREVLAANPFLRFDRTQRTGRQIDRIVRRLGGGLNEFLELNAIETLVELVRQEVGVTLLPLLN
GANWQASPQLRVLPLPAELGPAVRAIGMIERRDHARLAVTAEICAQCGALFGR
>SEQF2266_AEE67913.1 endonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRINCVPVEELSGPHLVAEYRELPRVFALAHKAAARGALVQPAAYTLGKGHLLFFYTRLGYLARRHRALVEEMRRRGYR
PAFAGVTCEDFADIPAPFWNDRTPTEEALALNRARIAARGGGKA
>SEQF2266_AEE67914.1 nitrogen regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQVTAIIKPFKLDEVREALAEVGVSGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKIRVEVVLADDMVDPAIEAIVKA
ARTGKIGDGKIFVTPVEQAIRIRTGESDEEAL
>SEQF2266_AEE67915.1 NAD synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLARVGIAQINACVGDLAGNAARVLQAARQAAGQGADVLVTPELVLTGYPPEDLLLRPRFIQEQQAVFERLCQDLAGLA
GLHVVIGHVLARQDRLYNAATVVCEGRVLGSYCKRELPNYSVFDEQRYFSAHGEAFGFTVKGVRFGLNICEDIWFERAPR
AAAADGAQVLLVPNASPYNTGKQEERLSVARRSVQDTGCALIYANLVGGQDELVFDGASFALDAQGRMSARLPDFTEGVN
VLEVDARSTVRPVTEQAAVQPYGLEEQVWNALVLGVRDYLGKNGFPGAIIGLSGGIDSAVVLAVAVDAVGADNVRAVMMP
SRYTADISLTDAADMARRLGVQYDVIAIGEVVDRFEAALAPQFAGLPVDATEENIQARARGTLLMALSNKTGRLVLTTGN
KSEMTTGYCTLYGDMAGGFAVIKDVPKTLVYRLANWRNQRQPIIPERIITRPPSAELRPDQTDQDSLPPYDILDGIIERY
MEHNASAADIVAAGFPREAVGQVVRLIRINEYKRRQAPPGPRITPRAFGRDWRYPVTNGFRETV
>SEQF2266_AEE67916.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPKELENVVATLDNYVPDTAWGQTLVGIGVLVLTALFVQWVVARVVLYFAHRLLVLSGREDWDRALSRRRAYQNFWYAV
PFAVVSMGIELVPHAERAVTVVGRLSHAGAWICVFVAFSGVLSAWQDTYSATTRAQTRSIKGYIQIGKLILCAVGAVLVL
SILLDRSPLWMISGLGALSAVLLLVFKDTLLSLVASTQLTSNDMLRIGDWIEMPQANADGFVKDIALHTVKVQNWDNTVT
TVPTYKLFSESYRNYRHMFESGGRRIKRTLRLDAASVRFMNEEEGGRLKRFVLLRDYLQAKEDALLEANRQLGELAEVPA
NRRRLTNIGTFRGYALAYLRQHPEVRQDIAMMVRMMEPQPNGIPIEIYCFTAITAWVEYERIQGDIFDHLLAILPELGLR
LFQEPSGSDLGNLAGGMREAALHEFRREQVAAGEAPLALRGDGAAPVR
>SEQF2266_AEE67917.1 argininosuccinate lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANTSHSSQDQFANKAQAWSARFSEPVSDLVKRYTASVDFDKRMARHDIRGSLAHADMLAAQGIISAQDLADIQRGMQQI
LSEIDAGSFQWLLDLEDVHLNIEKRLVELVGDAGKRLHTGRSRNDQVATDIRLWLRDEIDTLVDLLRQLRHALATVALEN
AATIMPGFTHLQVAQPVTFGHHLLAYAEMFGRDAERLADCRRRVNRLPLGAAALAGTSYPIDRERVARTLGFDGVCRNSL
DAVSDRDFGIEFCAAGALIMTHISRLSEELVLWMSPRVGFIDLADRFCTGSSIMPQKKNPDVPELARGKTGRVNGHLVAL
LTLMKGQPLAYNKDNQEDKEGLFDTADTLRDTLTIFADMAGGIKVKADNMRAAALQGFATATDLADYLVKRGLPFRDAHE
IVAHAVRDCEQRGCDLADLSLADLQAYHPSIGEDIHQVLTLEGSVAARKHIGGTAPERVREEAQRVLAETAGA
>SEQF2266_AEE67918.1 hypothetical protein BPTD_2661 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVSPLHALTSRRSMKFLRAPAPKQDELEQILQAAMSAPDHGALRPWRFVLIRGDAIGRLADLAIEAVKRSGDKRMTPEK
EKSVREWAAGVPLFIAVAQKISHDNTRIPEQEQLLATGAAVMNILNAAHMLGYGAFWSTGLGTYVEDVQDALGLDAMDYR
FLGFVALGTPGCAVPPAQRPDFREFVSEWQGVTA
>SEQF2266_AEE67919.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67920.1 putative molybdenum-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTYKFRIGLRPQWVLEGGEGAAGQPLQDMLALLAAIDDSGNIAGACKTCGLSYRHAWGVLRRFEALFGMPLLVTRRRLGT
ALSPFAQRLLWANRRIDARLMPTLESLASELQEELERLLPESGPHLRLHASHGFAVEALMQHLDTRLPGVELRYRTAAEA
LASLRGNDCDLAGFQVPQGEFEAPILRLYAQWLDPDEHLLIHLAVRNTGLFVVAGNPKGIGGVADLARADVRFVNRQAGS
STYYLVNLMLQRAGVAPAAVQGYQNNEFTHMAVAAHIASGMADTGIGVETAARRFGLDFIPLVRERYFFAIRKTALESAA
MRALLEGMRSPEYRGFVGQLPGYDASDTGAIQTLEQAFARDFRPRAAL
>SEQF2266_AEE67921.1 molybdenum cofactor biosynthesis protein A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKVIFLTDRRQADLAAPSADLPPAGEPARDVRARPLRDLRISVTDRCNFRCTYCMPREVFDSSYAFMPHSALLSFEEIT
RLAAQFARLGVEKIRLTGGEPLLRKNIETLVGMLAELRTPAGRPLDLTLTTNGSLLARKAAALKQAGLSRVTVSLDALDA
ALFARMSDSNFSPDDVLRGIDAAAEAGLAPVKVNMVVRRGLNDGEILPMARRFRGSGHILRFIEYMDVGSTNGWNLSEVV
PSDEVLARIAEHHPLAPLDTPVMGRVAERWRYDDGGGEIGAISSVTHAFCSGCTRARLSPEGRLFLCLFASHGHDLRAPL
REGADDDSLARILTGIWGQRDDNYSERRGQGGGAADRIEMSYIGG
>SEQF2266_AEE67922.1 molybdopterin cofactor biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLEFDQAQQLLAQAGAPVAGTENVALEQADGRVLATDLAATVDLPPADNSAMDGYAIRLADYQAGARMPVQQRAYAGDMP
QALIPGQATRLFTGSLIPAGADTVVMQEDAREADGQVEITQAPTLGQWIRKRGDGTTAGRPLLDAGTLLHAGHVGLLGTQ
GLASVPVRARLRIGVLTTGDELVAPGQPRAAQQIYNSNGPMLAALVRGMGAQVSHVLHARDDEDALRAALCTLLADSDLV
LSSGGVSVGERDLVKPVLEALGGELGLWKVRMKPGKPVALAHIDGKPVVCLPGNPVSSYAVFALLVSPLVRRMQGRAELY
PTVSRLPLRTERPRQDSREEFLRVQWRATEDGAGELQPFGNQDSAIITSVPWSTGLARLPAGVPVNDGERVGYYDLRHWL
T
>SEQF2266_AEE67923.1 molybdenum cofactor biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDAKQVSLVCAILTVSDSRSAGDDTSGNMLAESLAHAGHMCVRRDLVKKDLYQIRRVISEWIADPEVQVILVSGGTGFT
PRDCTAQTIEPLFDKTIEGFGELFRQLSYEEIGSSAVQSSALAGTANDTVIFCMPGSNHACKLGWNRIIREQLDDAHKPC
NFAMHYRAKPDAD
>SEQF2266_AEE67924.1 molybdopterin converting factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIMVIVQEADFDSAALLAALRERVGGQAGAIVTFVGYVRDFAPEQATETLYLDHYPGMCERELETIAATARERWDLAGT
VIAHRVGALPRGAQIVFVAAASAHRGDAFRGCEYIIDALKTRAPFWKRETLAAGDSFWVEQRQSDADRTQSWDDPGTPTK
EHP
>SEQF2266_AEE67925.1 molybdopterin converting factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGATIKVLYFARVAELVGKRTEDWPLAETVTGAQLLAALAARYPQLEPAERLKLAVNQTHVKVGASVRPGDEVAVFEPV
TGG
>SEQF2266_AEE67926.1 molybdenum cofactor biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTTPTLSHLDESGQIRMVDVGHKTDTDRVAIARGSVRMNATAYGLLTQPGQGKGEVLNTARVAAVLAAKRCAELIPLCH
SLPLAFVGIDFELDEAAHSVHIRATCRTQYKTGVEMEAMTACSVAALTIYDMCKAADKGIVIEQIRLQYKAGGKSGEWRN
D
>SEQF2266_AEE67927.1 hypothetical protein BPTD_2670 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALTQDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQP
EGAAPLLQVAELDVSASWMSLFWFAPVVDSLVVRQPKVALVREDVTRFNFSDIQKKVADMAAQSPPEPEPESGPPRFSLN
NMVLEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVARPFDTVPSSTLDVSFAGL
ELEKWADAWPLPLPVKLERALLDSDLQVLFEQPKDAAPRIKVVGELGLRQLDVRESSGDVLAQWSALAVRRIAFEPMQRS
LYVGEVELWSPQIQTRRYADQRLNWLDIAQKLQKLGAGDAPAKPTAASAPAPAPAPAPAQAQAQAPESATPAAAQAAAAP
QASAAAAAPDAWHVVVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRPIGLWLTMDSTIDGSWLRAKGSL
TLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGRLGAQARVRVAQRDGATQVVAEGAALRLSDLSLRDESVKPAVPV
SVKQFEARFDRLALDAQPSPFTLKADGVQGEGALAMQGSLTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRAINLSA
RGDAEFAAAAGATPMKAAWRGALDVNDLDLADRVNRDDFMQWKRLGLAGMQVSVNGDAFAANLGDITLDDFYGRVLLNAE
GRLNVMDLVAEPGQAGCSITQDTQTRARAAAPAKPGPMPDIAIGSVTLKGGKVTFTDRFVKPNYTAELSRIEGSVSAVSS
RQPKPAKVNVAGRVYTSAPFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQYQIKDRALQ
ASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSLDDPQFSVGGIIVRVLVNLVVKAVTSPFTLL
ASAFGGGEELSYIEFDPGSAALTPEAESRIETLAKALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTGGR
GKKPPPDGVEVAPAERAQYLEEVYDDTKIEDKPRNFIGMAKSIPAEQMEALLRGAAPLGAEDLRKLADARAQAVYEKLQA
EGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK
>SEQF2266_AEE67928.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDADPQFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAAAAQSAIHTDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPT
LLVVSEIFGVHEYIQDVCRRLARLGYQAVAPELFARYDDPTGYTDIGRLRAEVVGKAGDRQVLADLDAAAAWAAANGGNA
SRLGILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLGGQASELKPRSVLESIGDLKAPVLGAYGGKDAGIPLSDVDRMRLA
LAKGPQAARDSRIDVYPEAPHAFHADYRPSYRKAEAEQAWQRMLDWFGQHGLAA
>SEQF2266_AEE67929.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRHFLAALLLAAASGAACAQAGADPAGQAIFDQIVLTSGAANGAARTCGASPPDLAQHAETWRLNLRRYADEYHYAFDS
FDERYARGQQEGAEMMADMRASGVDGCTGALASFQRERAMTYDEMKQAIAEATDGLPEDQPAD
>SEQF2266_AEE67930.1 AhpC/TSA-family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIKVGDRVPDGTLTEFIETETAGCTLGPNAFQVADLVKGKKIALFAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIW
CVAVNDAFVMGAWGREQQAGGKVRMLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQLNIEAPGKFEVSDA
ATMLAQA
>SEQF2266_AEE67931.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTTISSFSSLYFATLLMLIGTGLFNTYMGLRLTAQSVNEIWIGALIAGYYLGLVCGARLGHKLIIRVGHIRAFVACAAV
ATSMILAQALVDHLPLWLLLRLISGIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGLGTVLGQLALTAYATLDDGP
LTLVAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRVPLSLTVLFVAGNLSGAFYGLAAVYAAKHGLSTSQSAIFVA
AAVTAGLLSQWPMGWLSDRINRAGLIRFNAAVLVLLPVLMWGWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVEPE
RRVGLSAILLMTYGVGACLGPLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVTGAHQVDEAPVHFVPMPDTLQSSP
AAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPPAPAADSESTSAPQAGEQAAPDDAAARRTGT
>SEQF2266_AEE67932.1 hypothetical protein BPTD_2675 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAALCWLLLRPDAQALRQAMQGVPVLAALAVLLPTVFV
AMARSVRYAGIVKSDAAQRLSLFIPLLAAFALFGESLTARKLAAIALAFAALACLLRRRAPAGAAADDAPDDRRAAWMWP
LAVWAGYGVIDILFKQLARSGTAFSAGLLATFVAAGLLTLAYLCIRRTRWQARHALAGVALGLANFGNILTYVRAHQSLP
DHPALVFGAMNMGVITAGTLVGALAFRERLSALNLAGLALALAAIAAMLPW
>SEQF2266_AEE67933.1 biotin synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEPRPMHTAYVPVPAPVRPPSAERWPLAAVAELFELPFLDLLHRAQQVHRQHFDANTVQLSSLLSIKTGGCPEDCAYCPQ
SAHYDTGVDADKLMPLDEVVRAARAAQANGAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAEQL
KAAGLDYYNHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAGLVAQLTNMEPYPESVPIN
NLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSAGRETMSDSEQALCFMAGANSIFYGDVLLTTGNPQVEADR
RLLQRLGMRAEGLPCAAGQA
>SEQF2266_AEE67934.1 hypothetical protein BPTD_2677 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRIATALILSASVFGVAQAGELDYPPAIESASALSHTQVQAELQAARTQGLMAAGEQDYPIAAYAAASTVSREQVRDEL
AAARAQGLTESGELAYPPVAG
>SEQF2266_AEE67935.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTPSTNTTREQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSVHYYFPCKDDLLYEAVENYTGSALETLRGISPTLPA
KERLDAYIAMVESHSCQADQLCLGGMLAAELNTLPERVRAALQAFFTVEENWLAKVLADGAREGTLRYASTPEKAARALF
ATVQGCLLGARLFQRPPELREALGALYVQCGASPAH
>SEQF2266_AEE67936.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE67937.1 putative membrane transport ATPase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSTTRDLALDMPSGQRTDAHGHDHAGHDHAGHDHAGHDHAHDHGIPACCGHGHGQPAAPAAAPAWQPGPGQQVTRVRIG
QMDCPTEETLIRKKLASLPEVHELDFNLMQRVLIVLHADGALDRIDAAIRSLGMTPEPLAGDAPATPAGAAAPSRGWRLL
AAGGVLAALSELAHFTGQPVYVAAALALAAILACGLSTYRKGWIAVRNGNLNINALMSIAVTGAMLIGQWPEAAMVMFLF
NVAELIEARALDRARHAVRGLLDLAPQTATARQPDGSWAEVPAARLRPGDLVRVRPGERIAADGTISEGQSAIDQSPITG
ESLPVEKGPDDDVYAGTVNASGSFDYRVTAAAGNTTLDRIIHAVEQAQGARAPTQRFIDRFSRIYTPAVVGLAVLVALAP
PLLLGHAWLDSVYRALALLIIACPCALVISTPVSVVSGLTAAARRGILIKGGVYLEEGRKLRWLALDKTGTLTQGKPVQT
DLELLHDASAGGRPALRAAVSLAARSDHPVSRALAQADHALDAPLDEVNGFAALPGRGVQGEIGGERFQLGNRRLMRELG
VSTPDIEARIDAYEAAGKTAIALADGQRVLLLAAVADTLKASSAAAVADLHRLGVRTLMLTGDNTRAAQAVAAQAGIDEA
RGDLLPQDKLDAVEAKLDPALRVGMVGDGINDAPALARADIGFAMGAAGTGTAIETADVALMDDDLRKIGTFVRLSRATH
RILTQNIVLALGIKAVFLVLAMAGQATLWMAVFADVGASLLVVANGLRLLRAGRHQAS
>SEQF2266_AEE67938.1 MerR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIGELARTAGTTVETVRYYEKEGLLPAPERGLNNYRSYGEAHVERLRLIRNCRALDMTQDEIRTVLALADNHEAGCAPI
NQVFDEHIAHVDARIAELTQLKAQLGELRQRCASARPDAEDCGILHGLSEMQVEERPERHTHLG
>SEQF2266_AEE67939.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF2266_AEE67940.1 hypothetical protein BPTD_2683 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTLYTLTRGDAPLVVNIPHGGTWVPAELRPLMQAEALGVPDTDWHVDRLYDFVRARGVTLMAATHSRYVIDLNRDPDGG
VLYPGASNTELCPTTRFDGGPVWKDEAAGHLLLDVAARRRQYFDPYHAQLAAELARVQARHGYAVLLDGHSIISHCARFF
DGKLPDLNLGTADGASCPPGLQQAAAQALQADGFTAAVNGRFKGGWITRHYGRPAEGYHALQLEMALSAYMTEQAPFHWQ
PERAEPLRQVLETLVAALLAWRAA
>SEQF2266_AEE67941.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTEKTAIVTAGGSGMGAAAARRLAADGFRVAILSASGKGEALAAELGGLGMTGSNLEPADMQALVDATLQRWGRIDAVV
NSAGHGPKGALLEIDDAGWHAGMDYYLLNVVRIARLVTPVMREQGGGSIVNISTYATFEPEAAFPTSGVLRAGLAAFAKL
YADQYAADNVRMNNVLPGFIDSLPEKEDRRARIPMSRYGLAEEVADLIAFLASSQSSYITGQNIRIDGGITRSV
>SEQF2266_AEE67942.1 exported SurF1-family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHPTQQNAAGGREPAPTRRPRGAATLIILAALAAALFAGACALGVWQIHRLAWKRNLIAQVETRAHAPATPAPVPADWP
GLSNANAEYRRIAASGTWHYAGQTLVQAATELGSGYWVMTPLRLDGGGTVLVNRGFVLPEWRRQQSAGDAARPDAPARVE
GLLRMGEPAGGFLRENKPAAELWYSRDLPAIAARRGLGEVAPYFIDADAAAGAPRNPAQAPVGGLTVLSFPNNHLGYAIT
WFGLAAMVLAGAAIVARHELRARRRG
>SEQF2266_AEE67943.1 cytochrome ubiquinol oxidase subunit IV [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSERTEHAADLPPPHGAGHHHEDDDGPHGTLASYLTGFVLAAILTAIPFWLVMDGVFASSRTTALVILAFAVVQIVVHLV
YFLHMDAKSESGWNMLALIFTLVLVVITLSGSIWIMYHLNSNMMPMSVHDVRNMP
>SEQF2266_AEE67944.1 cytochrome ubiquinol oxidase subunit III [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEPTATTLPPSAAPDPERLFYVPGEHHPKNGTLLGFWVYLMSDCLVFACLFATYGVVGRNYDGGPTGAELFDLPLVAVN
TSLLLLSSITYGFAMLEMRRQRIGATQAWLAVTGLLGAGFLGLELYEFAHLIHQGAGPQRSAFLSAFFTLVGTHGLHVTF
GIVWLVTLMVQVARHGLIPENRRRLMCLSMFWHFLDLIWVGVFTFVYLMGVLP
>SEQF2266_AEE67945.1 cytochrome ubiquinol oxidase subunit I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDQPDQTLLLGRLSWEAIPYHEPILLVTFIVVALGGIALLGAITYMRAWGYLWREWFTSIDHKKIGIMYVVLGIVMLLR
GFADAIMMRLQQAIAFGDNLGYLPPHHYDQIFTAHGVIMIFFVAMPLVTGLMNYIVPLQIGARDVAFPFLNNFSFWMTAT
GAVLVMMSLFVGEFARTGWLAYPPLSGILHSPDVGVDYYIWTLQIAGVGTLLSGVNLLVTIVKMRAPGMTLMRMPVFTWT
ALCTNILIVAAFPVLTAVLALLSMDRYVGTNFFTADGGGNAMMYVNLVWIWGHPEVYILILPAFGIFSEVVATYCRKRLF
GYASMVYATVVITVLSYLVWLHHFFTMGSGASVNSFFGITTMIISIPTGAKIFNWLFTMYRGRIHFEVPMLWTLGFMVTF
VIGGMTGVLLAVPPADFALHNSLFLIAHFHNVIIGGVLFGLMAGITYWFPKAFGYRLDPFWGKCSFWFWLVGFYLAFMPL
YVLGLMGVTRRVNHFEDASLQIWFQAAALGALLIALGIASFLIQLVVSYRRREALRDDTGDPWDGRTLEWSTSSPPPAYN
FAFTPRVHDLDAWWQMKQYGYARPLQGFVPIHMPSNTWAGIVLTGLSGVLGFALIWHMWPLVVLAFAALIGVTIAHTFNY
QRDHYVPAEEVVRCEAARTALLSRHV
>SEQF2266_AEE67946.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTTTQHPGYAPATPHPGSSGGASHSHVAPGEIAVGVVIGRASEYFDFFVFGIACVLVFPSVFFPFESELDGMLWAFVIF
SFAFIARPFGTALSMAVQRRWGRGAKLTAALFLLGTATCGMAFLPGYDAIGMYAILLLSLFRCLQGLALGGSWDGLPSLL
ALNAPAGRRGWYAMLGQLGAPIGFMIASALFLFLISTLARDDFLDWGWRYPFFVAFAINVVALFARLRLVVTEEYTQLME
EGELEPIRTTEMLREQGYNMLIGAFAALASYALFHLVTVFPLSWIAAGASQMSGDVLVVQIAGAALAIVCTLASGWLADR
IGRRTTLGLMALLIGVFALFTPWLLGGGPLAQDAFILIGFALLGLSYGQASGTVTANFIRRFRYTGAALTADMAWLLGAA
FAPLVALGLSARFGLVAVSVYLLSGVVCTLLALRVNRLLETRD
>SEQF2266_AEE67947.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67948.1 hypothetical protein BPTD_2693 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRTQQWMEDLQKNISDLIARSPAADVERNVRAMMTQTFARLDLITREEFEVQVDLLARARTRVDQLSAQVQQLEARLAA
LEAGKPQA
>SEQF2266_AEE67949.1 nitrogen regulatory protein P-II [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLVIAIIKPFKLDEVRMALSDIGVQGLTVTEVKGFGRQKGHTELYRGAEYAVDFLPKLRVEAAVPDHLVDQVIEAIEQS
ARTGKIGDGKIFTAPLEEVIRIRTGESGEAAL
>SEQF2266_AEE67950.1 autotransporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCDTCRDDDGTSPSIRVQGGVVQGGMGANNVAVVATGSGKVAIENAELLGASGMYATFGAQVDMKGGRILAHNTNILGSQ
GYADGPYGGVVVTEDGQVNLEGAKVSATGLGAAGLWLLGDKDTSPRASLRNTDVHGEVAAIALGFNGEANISGGSLSVED
GAVLTTLTPDAVEYYYDYALSMEHLPADAPLTPVRVTLSDGARASGETLIAHGGLLPMTLRLSSGVDARGDIVTLPPSAP
PDSAEQPDAEPEPDAELEPDAAAQSDAKANARVMAQVDGGEPVAVPIPAPSHPDAPIDVFIDSGAQWRGMTKTVNALRIE
DGTWTVTGSSTVNSLHLQAGKVAYATPAESDGEFKHLRVKTLSGSGLFEMNASADLSDGDLLVVSDEASGQHKVLVRGAG
TEPTGVESLTLVELPEGSQTKFTLANRGGVVDAGAFRYRLTPDNGVWGLERTSQLSAVANAALNTGGVGAASSIWYAEGN
ALSKRLGELRLDPGAGGFWGRTFAQKQQLDNKAGRRFDQKVYGFELGADHAIAGQQGRWHVGGLLGYTRARRSFIDDGAG
HTDSAHIGAYAAYVADNGFYFDSTLRASRFENDFTVTATDAVSVRGKYRANGVGATLEAGKRFTLHDGWFVEPQSEVSLF
HASGGTYRAANNLSVKDEGGTSAVLRLGLAAGRRIDLGKDRVIQPYATLSWLQEFKGVTTVRTNGYGLRTDLSGGRAELA
LGLAAALGRGHQLYTSYEYAKGNKLTLPWTFHLGYRYTW
>SEQF2266_AEE67951.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRKSAPSSTAAPAPKLAADRIRATARELFYREGIRAVGVDAIVSAAGVTKPSLYRSFSSKDELAASYLRDYETEFWSRF
DAGAQRHPDDPRAQLRLYLESLAERAANAGPYRGCGLSNAAVEYPDPDHPARLVAEAHKRELRRRLIDMARRMGAREPEV
LGDGLMLLIEGAFISGQLFHGDGPARHVARLADRLIEASL
>SEQF2266_AEE67952.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSITRLPPPFRHLGQKYAFVVVAVIFFSLLVSAGLRSTPSVLIVPLEQAFGWSRSTISLAAAIGIFLYGLAGPFAAAAME
HFGLRRVLIGALLLMAASSAASAFMTESWHLLLTWGVFSGIGSGAVAVVLGATIVNRWFTTRRGLMMGLLTASTATGNLL
FLPVLAALAASGDWTRVVWAVAAGAALMAPLAWWLVPDRPADVGLRSYGSAPDAPEPSVAPRTGLLAATFGALRRAARTR
TFWYLFATFFVCGFTTNGLVGTHLIALCGDHGIAEVQAAGLLALMGIFDLVGTTASGWLTDRYDPRRLLFVYYSLRGLSL
MYLPYSDFSFYSLSLFAIFFGLDWIATVPPTLRLTTEAFGDRDAPIVFGWIVAGHQLGAASAAWMGGVVRETTGSYLMAF
VLAGSTGLIAAVIALMINRKPRPTALAEA
>SEQF2266_AEE67953.1 putative ABC transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTASQALLELRGLQVAYGGIRAVRGIDLRVDPGELVCLIGANGAGKSTTLRAICGLVPLAGGQVLYDGQSIGGQPSFALV
RKGLVMVPEGRGIFGQLTIEENLAMGAYVRRDAAQVRQDTERVFTLFPRLAERRRQAAGTLSGGEQQMVAMGRAMIARPR
LLLLDEPSMGLAPLMVDKVFEVVRTIAAEGVTILLIEQNARLALEHADRGYVMESGEITLSGPAREMLHDPKVRAAYLGE
VEA
>SEQF2266_AEE67954.1 putative ABC transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRILHAQGLGKRFGGLRALSEVSFDIEAGEIYGLIGPNGAGKTTLFNVLTGLYVPEEGQCEFNGMSLIGKKPHEVAAAG
LARTFQNIRLFANLSAIENVMIGRHVRTHAGVLGAVLRTRAERVEEAAIERRAQELLEYVGIGHRANDVARSLPYGDQRR
LEIARALATDPRLLALDEPAAGMNASETVVLRQLIEKIRTDGVTVLLIEHDMKLVMGLCDRVLVLEYGKVLSMGRPAEVQ
RDPKVIEAYLGAGAAHDPELHTTEQAP
>SEQF2266_AEE67955.1 putative ABC transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRQPNKSGLSARNLVGIALIGIVLAVLPFVLGMAGQSWVRILNFALLYVMLALGLNIVVGFAGLLDLGYIAFYAVGAYT
WALLASPHFGLHLPFWAILPMALGVACVFGVLLGAPTLKLRGDYLAIVTLGFGEIIRIFLNNLNAPVNITNGPQGINRID
AFKVGDFVFGRTETILGIRFTGPEKYYYLLVLLTLLIIVVCVRLQNSRIGRAWEAIREDEIAAKAMGINSRNIKLLAFAM
GASFGGVAGALFAAMQGFVSPESFSLTESISVLCMVVLGGMGHIPGVILGAVILAVLPEFLRAVVEPAQHLLFGAVVLDP
EGIRMLLFGLAMVCVMLFRPAGLWPSAVRKRELSSTRQGGAA
>SEQF2266_AEE67956.1 putative ABC transport protein, inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDIFTQQIINGLTLGSVYALVALGYTMVYGIIGLINFAHGDVVMIGAMAATMVAAALVGGDPSTSAFAVLGAGLLVSVPL
CMAVGWTAERVAYRPLRRAPRLAALITAIGVSIILQNVAMMVWGRNYLNFPQVLTPTVFEIGGARMSMLQIAIVVIAALI
MGALLLVVHKTRLGTAMRATAQNREVAGLMGVNINTVISAAFLIGSALAAIAGMMVTTYYGVSQYTMGFMLGLKAFTAAV
LGGIGNLVGAMAGGLLLGIIESLGSGYIGDLTGGFLGSHYQDVFAFVVLVMVLIFRPSGLLGERVGDRA
>SEQF2266_AEE67957.1 putative ABC transport solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLRTPIKMLAAGIAAACLAGVAQAADIKFGFAAPLTGPQSHYGEDMQNGLTLALEEANQKGVTVGGKPAKFVLVSRDDQ
ADPRVAVQVAQQLVDQEVNGILGHFNSGTTIPASRVYHDAGLPQIAMATSPEYTNQQYETTFRMMTSDTQQGAAVGKFMV
EKLNAKKVAIIDDRTAYGQGLADEVEKAVKAAGGQVVRREYTTDKANDFTSILTNIKGVAPDAIFYGGLDAQSGPMKRQL
ATLGLKAPLVSGEMTRSDTFIKLAGDAADGTYASLAGVPLEKMAAGKEFAKRYEERFKKAPGVYAPYAYDGAWNMITAIE
KAGSADPSKYLPELAKLSRKGATSEHIAYDAKGDLKEVAVTIYEVKNGKWEMVETMVSQAN
>SEQF2266_AEE67958.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE67959.1 trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASTTLGVKVDDALRDRLKAAAQKLNCTPHWLHKQAILSYLDRIERGHLPAEMAHLGRDERGEDEDAGASADAMPPFFEF
GQDVQPQSVLRAAITAAYRRPEPECVPLLLGQARVAGPEKVHAMASKLVHALWAKRSGGGVEGLIQEFSLSSQEGVALMC
LAEALLRIPDRATRDALIRDKIVHGDWRSHMGGSQSLFVNAATWGLMITGKLVAVSSEQSLSKALTRLIGKGGEPLVRKG
VNMAMRMMGEQFVSGQTISEALANNRKMEARGFRYSYDMLGEAATTAADAERYYAAYEQAIHAIGKAAAGRGIYEGPGIS
IKLSALHPRYARAQRDRVMAELLPRVKALTLLARQYDIGLNIDAEEADRLEISLDLLEALCFVPELDDWNGIGFVIQAYQ
KRAPFVIDYVIDLAKRSRHRLMVRLVKGAYWDTEIKRAQVDGLEGYPVYTRKVYTDVAYLACARRLLAAPEATYPQFATH
NAYTLSAIYQMAGQNYYPGQYEFQCLHGMGEPLYEEVVGPLAQGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFV
NLIGDDSITVEQLVADPVEAASRIVPLGAPHEKIPLPRELYGSVQQGARANSAGLDLTNEHRLGSLSAALLASAATDWRA
WPMLGEGDPGWDPASAVEVANPANLRDIVGHVMQATPQHVEQALRDAANAAPIWQSTPVPERAQCLRRAAQLLEEQMQTL
LGLIVREAGKSLPNAIAEVREAVDFLRYYADQAEREFDNDTHRPLGQVLCISPWNFPLAIFTGQVAAALAAGNTVLAKPA
EQTSLIAGQAVAILRAAGVPAGAVQLLPGRGETVGAQLVASPQVRGVMFTGSTEVARIIAGALAERLDDQGHTIPLIAET
GGQNAMVIDSSALAEQVVFDVLTSAFDSAGQRCSALRVLCLQEDSADHVLTMLRGAMRELRVGNPDRLSVDVGPVIDAEA
RNGIQGHIEAMRSSGRPVDQVELAGECRYGTFVPPTLIEIDHIGELTREVFGPVLHVLRYRRDDLDGLIEQINATGYGLT
FGVHTRIDETIARVTEQVHAGNLYVNRNIVGAVVGVQPFGGEGLSGTGPKAGGPLYMYRLLATRPAGLPPALDPAAPMPQ
ALALPGPTGETNTYRVEPRGAVYCVAATEAGARAQWAVVSQTGNHAWFADTPAARAWIDGLDARLREQAALLEDSEFDEA
DFQAVLFEGDGDALRALNMRIAQRPGPLVSVHGLSADALAAGASYAPDRLLAERSISVNTAAAGGNASLMTIG
>SEQF2266_AEE67960.1 lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSTVARCAPLLIATILAGCGASPPARYYTLQPPGATQAVQAGVAAAPFMIEILPVNVPAQADQPQLMVRTGDGTVAPLY
SERWSAPLPDEFRAALSDTLTRELGAPDVQVIKPASGTPVWRVQVDVQRFDLVAGGPSLLDATWRVRPVNLVAPALVCRT
RVDVPAGGERDTAALVQAQQRGTALLARTIASAIRSQGQSAEAGGPEVQVLGCSRNDAKTEG
>SEQF2266_AEE67961.1 hypothetical protein BPTD_2707 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAESTPPPQEPGTPIAAPQIARKQKSRISWIWLVPIVAALAGLSLVVRTIMQAGPEITILFDTAEGLEVGKTQVRYKDVN
IGVVQGIHFNEDRSKVVVEAELAKEVSNLARDGTQFWVVRPRLGISGVSGLGTLLSGAYIGVDAPPDKEGGTDRASKFEF
VGLELPPAVTHDRAGKRFMLSATDLGSLDIGSPVYFRRIPVGRVIGYKLDDSGRVVNVEVFVDAPNDRFVTDSTRFWNAS
GVDVAVNASGLKVRTQSLVSLAVGGVAFESVSARQGEPVKADTRFELYESETAAKANPDDQPFPIRMRFDQSIRGLTVGS
PIDFQGITLGEVTRIAIDFDNAKKRFFAVVDATVYPERIGRVFDEIRARTEASSGSHAAGQLLSIMIKYGLRAQLRTANL
LTGQLYIVLDTFPEAPPVAFVPGDDPVIIPTIPGQLDQLQAQISSIVTKIEKIPFDQIGTDLRATLASTAKLMNRLDKDL
APEARAVLSQARQSLVDINNMLAPDSGLPANTERAMQEMSRAARSLRNLADYLQTNPEALLKGRGADPIPGAGPVRN
>SEQF2266_AEE67962.1 hypothetical protein BPTD_2708 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLSNWLALALAALIVFVLANAYPVASLEVQGMVQRASLLDAIRVTWQQQHWVVAIMTGLAGFGMPLVQLMVLLWVLGPL
AAGRLPVGFRGAMRFLGLLRPWSMVQVFLLGVVVSVVKLAGMAAVKPAVGLAGFAALTVLLTILGRLSPHVLWRYAERAG
LVDVHVPRSGPGMVLTGCHVCGQVQALPAGHDDEALHHCRRCAAQLHLRKPDHLARTWALLLAAVVFYIPANILPVMSVS
SVVGDSAHTILGGVVELWEMGSWDIALIVFVASIMVPLTKLLALSLLALTLQRGSTANLRQRTRLYQMVEFIGQWSMLDV
FVVIVLAALANFQGLMEISAGSGAASFGMVVILTMMAAMSFDPRRSWDLESAPAPHVHDALHAHSSAHGAAASDQPST
>SEQF2266_AEE67963.1 ATP-dependent Clp protease ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISQELEVSLHMAFVEARSARHEFITVEHLLLSLLDNASAVEVLRACAANLDDLRRNLRQFVTENTPVIPSGAAEVDTQP
TLGFQRVIQRAIMHVSAGGTGKKPVTGANVLVAIFGEKDSHAVYYLQQQGVTRLDVVNFLSHGITKQPQEESSALPKEQQ
ASGEEPGAESRQSPLDQYANDLNAAALAGRIDPLIGREHEVERVIQVLCRRRKNNPLLVGEAGVGKTAIAEGLAWRITRG
EVPEVLQTAQVFALDMGALLAGTKYRGDFEQRLKGVLKQIRGNPDAILFIDEIHTLIGAGSASGGTLDASNLLKPALSSG
QLKCIGATTYTEFRGVFEKDHALSRRFQKIDVPEPSVEQTVQILRGLKSRFEEHHNVRYSAAALSAAAELSARYINDRHL
PDKAIDVIDEAGAAQRLLPRSRQKKVIGKGEIEHIVSKIARIPPQSVSNDDRSKLATLDRDLKTVVFGQDEAIGALTAAI
KMARSGLGKPDKPIGAFLFSGPTGVGKTEVARQLAFTMGIELLRFDMSEYMERHAVSRLIGAPPGYVGFDQGGLLTEAIT
KQPHCVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKADFRNVILIMTTNAGAEILNRPAIGFANERVAGDEMAEIRR
MFTPEFRNRLDAIIPFSALSREIILRVVDKFLMQLEDQLHERRVAAVFTEKLRDHLAKEGFDPLMGARPMQRLIQDTIRR
ALADELLFGKLVDGGNVTVDLDDAGKVVLGFEAPGKPSSNAADKQEVELID
>SEQF2266_AEE67964.1 penicillin-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTFRRLAGWRRPALAAAVLAGGVVMALLALDRLFPLPRFGSDGAQVVVAADGTPLRTYPSRDGVWRYPVGPGQVSPHYLE
TLLTYEDRWFYWHPGVNPFALARAGWQWAAHGRIVSGGSTLTMQVARLLDPELAGQPSKTLSAKLRQAWRAIQLEMHYSK
DEILGLYLSHAPMGGIVEGVEMGARMWLGKSAADLSHAEAALLTALPQAPSRLRPDRHPQAAQLARDKVLQRMAQRGVWD
AALVADARIENVVAPPLRARWLAPLAAQRLLGEAGPAAGVVRSTLDPDIQSTVEAMLLDRVDALPPKVSMAVLVMDNDSL
EVKAYAGSADFTDDSRYAHVDMVRGVRSPGSTLKPFLYALALDEGLIHSESLLLDAPLSFGGYAPGNFQAAFAGPVSVAQ
ALQRSLNVPAVDLLDRVGPARFASVMLAGGVHLRMPAGAVPNLSLILGGGGTTLEELVGAYRALARGGLSGRPRLRASQP
RIEARLMSPGAAWIVRDILELGGHPDRPLFQGAAAGRQLAWKTGTSFGFRDAWAVGVTDRYTIGAWVGRPDGTPNPGFFG
ANVAAPLLQDIVAALPAGAPVPRTRPPQVQAVVTCWPLGWRLGSAPAGICPERRMAWALDDTVPPSFVGYADTATGPLRI
EGVADGTILRPVPGKRAVTLEVGAQGASGEVWWMLDGKVYRSGAAGQAQTLTLSRNGRYALTVMDGQGRYAGLEFEISGV
TP
>SEQF2266_AEE67965.1 hypothetical protein BPTD_2711 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGMKKEAWLALGGAVVVAAAVGTGWWMGKGGGQPAATPAAVTAPAAGQAAQPAPQAAQPATGQAVVGSADPFAALNCQP
RQYNDTLSLALTFTQPVDRRTDLSRLIKVVDTGPLAQSDDENAAIERPAPAQAGAAGAKGKQVDGAWAVGDNPRVVYFPY
VRPQRSYAVQWQGDVPAGDGKSTLGAVGHCVVNTQAMPPSFYFASRGVVLPAGQNGGLPVATVNLAEVDVQFLRVEPDRV
PEFFGSVLGIGNDAGADDRDDADDWRYADNRSLKGSVSNWDLDRLHGLTTSVYQGRFLTDDKPNRRHVTFLPIEGVKELQ
EPGIYVAVMSQPGRFRYEYQVTYFYVSDIGLHTRRYAERIEAYTVSLKDGVAIPGALVEVLDGAGKVLAKANSDAQGHVR
IDGDFAKSKVLRASRGKEMTVLALGEPALDLSEFDVGGHPGRSNNLFVYAGRNLYRPGETFHVSVLPRDPDGRPLAAAPV
SATLKRPDGRVVRTALWHPAKDQPGYIEQAIELPVDAQTGAWMLELRIDPAARLPDAAWKFQVEEFLPERMKLQLDSAQT
VLQPGQPWRVDVQGDYLYGAPAAGNRLLSSFQVKRNRYALPQQWPGFIFGDVADDTRRHYEELPESELDDTGAGQLEIDP
HTDGTHSPMSVRVSASLLELGGRPVVRSLERTVWPAPQLIAVRPLFDRDVAREGAPAAFEITRVDASGKVVPVQQAQVRL
YHEERQYYWRFDDQRGWHSGYTENEELTDSRVVDVGERTPLTLNVGWGRYRLEIADPQTGETLRYRFYAGWNAQDADAVG
NRPDRVQLKLEGVPARPGDTVAMTITPPHDGQALVTVEGDRMLWSKWVPVQASGTQVEIPVDKAWKRHDLYVSATVFRPG
SQGDRVTPARALGLAFLPIASDERRLQVSLSAPAKTRPETRATVRVKVEGAAGKAARVTLSAVDVGILNINQYATPDPLD
FFFGKHRYAPELLDIYGKLIEKMDGTQGRLKWGGDAAMRGDSRSLPKKVKLVDLFSGPVKLDDKGEADIALDLPDFNGTL
RLMAVAFTADQFGSADREMTVAAPIVAELNTPRFITPGDQTAIALDVTNLSGATQKITVRLQALDPLAIADGTRTLTLKD
KQRSTLRFVATTTGSYGLGLMRLSVDGEGAAEPVRIVRESVLQVQPAHAPERRVRRVRLNPGEALPAPGDWTSAYFPDSV
SVSMTLSNRPPINVSRLVDGLLTYPYGCTEQTISAAIPWVLIDEAAAERFGLKVYSRADRESRVASALGRLAGMRAANGS
YSLWGDSSSRDVWLTAYTVGFMQDVRDHEFNLAPALLERPRQWLLEQLQQASGGFGTWSPNLRRTLASGRFDENDAAILR
EDHRRFAGLAAAALVLARDGKAPLSTVRQLYDNYQERARSPLPLMQLAAAFKLMGDEGRMKTALDEAMTRSYGINRRAGS
NYLDEWLGDYGSAVRDYALSYALVNQYGLKHDRTEALLDQVGGYLGVRSYLSTQEQMALLLAAGATGAESRTPWQAALQI
GTGELKTLQGRDDHTLALSAGDLAGLQLRNTGSQSMFAEFDVQGTTMAAPAPRSDVIRLKRVWYRPDGTAWNGGTLQTGD
MLVVWVQAEASRLIPDALVVDRVPAGFEIENLNLSQSPDMQDWTIGGRRVAESMADPNIKHREFRDDRYVAATMLGRGKV
DIFYLARVVTPGRYSVPATEAEDMYRPELRAVGDSWSSIEIRDRAPRRP
>SEQF2266_AEE67966.1 ATP-dependent Clp protease adaptor protein ClpS [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSTLDTQHDVVVEKQPARTAPPPMYQVVLLNDDYTPMEFVVKVLQKFFGKNSEDATRIMLQVHHEGRAVCGVYPRDLAA
TRIAQVSQYARARQHPLQCIMEPT
>SEQF2266_AEE67967.1 putative cold-shock protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDTTATAVQGDNPKATGTVKWFNDAKGFGFITPDDGGEDLFAHFSSIQMNGFKTLKEGQKVSFEIIQGPKGKQALNITS
A
>SEQF2266_AEE67968.1 exported protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHCPPTPAPMSIAAVLPVLRRIARTRFCAAVLALSVLSFGAAAQHSSSGKPQPRLPTTPLSAGIHIIHAEVADNDDTRRQ
GLMYRTELPGNDGMLFVFEAPDQQCFWMRNTPLPLSIAFIADDGTIVNIEDMAPRTDDTHCSRKSVRYALEMAQGWFARH
GIKAGARINGLP
>SEQF2266_AEE67969.1 beta-ketoadipyl CoA thiolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVQAFICDAIRTPFGRYGGALSSVRADDLAAVPIKALMARNPGVRWEELDDVLYGCANQAGEDNRNVARMAALLAGLPI
EVPGATINRLCGSGLDAVGSAARAIAAGQTSLMLAGGVESMSRAPFVMGKADSAFSRNAAIYDTTIGWRFVNKLMKAQYG
VDSMPETAENVADDFKISRADQDKFALASQQKALRAQQSGFFDAEITPVSIAQKKGDPVVVSKDEHPRDTSLEALAKLKG
VVREGGSVTAGNASGVNDGAAALLLADEKAAASHGLTPRARVVGMVTAGVAPRIMGMGPAPATRKVLAQTGLSLAQMDVI
ELNEAFAAQGLAVMRDLGIADDDARVNINGGAIALGHPLGASGARLVTTAINQLQRGGGRYALCTMCIGVGQGIALIIER
V
>SEQF2266_AEE67970.1 putative chloride-channel protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRVSHRTLSVSLLLGGAALVALVSLGFTQLADLALHWNRQWTAAHGWLALIVTPCALAVLCWLTLRLAPYASGSGIPQV
IAGLSLPPGGAQQRLVSLVQALWKIPLTFLAMLAGASVGREGPSVQVGAALMLAWGQLWRRLGVPLRGFHSQELIAAGAA
GGLAAAFNAPLAGVIFAIEELGRGTVLRWQRLVLIGVLAAGFLVVAIAGNNPYLGTFAGQALAHNMLWWTLVCCVVNGIL
GGVFARLLGKGAAGAAPQRWRERVRRHPVATAFGLGLALACLGLLTGGAVYGTGYDQAAALLSGHDGVPDGFGLAKLAAT
VASYWAGIPGGIFTPALTTGAGIGEQISHWAGPGVDTRVLVLVSMAAFLAAATQAPLTASVVVMEMTGSQPMLFWLLVGA
LGASVVSRQFCPRPFYHLAAGRFRRTAVVEAGRKASTE
>SEQF2266_AEE67971.1 superoxide dismutase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAHTLPPLPYALDALAPRISKETLEFHYGKHHQTYVTNLNNLIPGTEFENLSLEEIVKKSSGGVFNNAAQVWNHTFYWNS
LSPNGGGEPSGALADAIKAKWGSVDAFKEAFNKSAAGNFGSGWTWLVKKADGTLDIVNTSNAATPLTTADKALLTCDVWE
HAYYIDYRNARPKYLENFWALVNWEFAAKNFA
>SEQF2266_AEE67972.1 exodeoxyribonuclease VII large subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIGLSVTNDVFARDILTVAQLNQAVGQLLERSIPSLWVRGEISNFTQAASGHWYFTLKDSRAAVRTVMFRSRAAQVGFV
PRPGDQVEVRARVSLYEPRGDYQLQADGMRRAGVGNLYEAFLRLKAQLQDEGLFDPQRKRQPARLPRAIGVVTSLHAAAL
RDVLSALARRAPQVPVIIYPAPVQGADAAARLAARVAQANQRAEVDTLLLVRGGGSIEDLWSFNDEALAREVAASDIPVI
SGVGHETDFTIVDFVADLRAPTPTAAAELACVPRGDLLAALRHTAEWLARAQQRRLDQAAQRLDRAAAMLTSPAQRLAHQ
QERLNTLRHRLASAWRGPQGHRVARLDMLAQRLAHRRPDTGRAAERSAALLAQLGRAQARLAAARQARLDTLAAQLRALD
PQHTLARGYAIVRDAAGAIVTDATRLAARDRIEIAVARGRIGADVTDIGTPDGTDGNPALRRG
>SEQF2266_AEE67973.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67974.1 putative biopolymer transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNLLREAGWPIWPLLATSILGLALIVERLLALRRSRILPRGLNEQVLEMLRNQQDTPEALARLERNSPLGRVLAEVLRQ
RHLPREELRTAVEDAGRGAAYELGRYVSAIGTIAVVAPLMGLFGTVVGMIEIFGSYAPGASDPAQLARGISIALYNTGFG
ILIAIPAMIVHRYLRARIDGYLHAMEQSAGRLARYVAPARSREARP
>SEQF2266_AEE67975.1 putative biopolymer transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNFRGGRASQDELEINLIPLIDVLLVILIFLAATTSFARFTQLKVVLPEAAAEQEAPPALEIAISQDGHYALNGNLLDAA
NPTDIAHALNLATAGKADPIVVINADAQATHQAVVNVMEAARLAGIGRVNFAAQIAR
>SEQF2266_AEE67976.1 tetraacyldisaccharide 4-kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPRCLRRLLERQWRQGGWLSTLLRPLAALTGLVVARKRNAYLTGARAAWRAPVPVVVVGNIYVGGTGKTPVVIEVVRQ
LQARGWTPGVVSRGYGVDVGAAPRVGQGQLAAADYGDEPALIARATGAAIAVHPHRPRAVQALLRAHPGVDVVVSDDGLQ
HLALARDVEIVVQDERGVGNGRLLPVGPLREPAQRLADVDAIVTNAGRPRAAAAPAAGAPRQLAMWLEPTHAQRVTDGAT
RTLADLAALPPARLAAAAGIGNPARFFQTLEQAGIRPAHTLALPDHYAYAQSPFTALDADLILVTAKDAIKCAALDDPRL
WAVQVGTRLSDPDFGDWLSATLRARQP
>SEQF2266_AEE67977.1 hypothetical protein BPTD_2723 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MESRLLDILVCPVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEARSLDAEAPAQPS
>SEQF2266_AEE67978.1 3-deoxy-manno-octulosonate cytidylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFTVLIPARLASTRLPDKPLADIAGKPMVVRVAERAALSGAERVMIATDDARVQQAAAAHGHAAILTRPDHPTGTDRLS
EAVDALGLPDDAIVVNVQGDEPLIEPALIDAVAAQLVAAPHADIATCACPLADAEALFNPNVVKVVCTADRRALYFSRAP
IPWARDALAGGARVLAPGLPAWHHIGIYAYRVAFLRRFPALSQGQLERYESLEQLRAMEHGHVIVVHHTDSAPAAGVDTP
ADLERARAAYTNRL
>SEQF2266_AEE67979.1 adenylate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLILLGPPGAGKGTQAAFLTQHYGIPQISTGDMLRAAVKAGTPLGLEAKKVMDAGGLVSDDLIIGLVRDRLTQPDCANG
YLFDGFPRTIPQADALKSAGIALDYVVEIEVPESDIIERMSERRVHPASGRSYHVRFNPPKAEGVDDVTGEPLVQRDDDR
EETVRHRLNVYQNQTRPLVDYYSSWAQSDAAAAPKYRKISGVGSVDEIKSRLSQALQS
>SEQF2266_AEE67980.1 short-chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEIANKVFIVTGGASGLGAGTVRMLVANGAKVVIADVQDEPGQALAKELNQRYVHCDVTQEADGKQAVAAAVELGPLFGL
VNCAGVAPAAKIVGKNGAHPLDLFQKVVSINLIGSFNMMRLAAEAMSANTPESTGERGVLINTASVAAFDGQIGQAAYAA
SKAGVAGMTLPIARDLSKTGIRCMTIAPGIFGTPMIFGMPQEVQDSLAASIPFPARLGRPEDYARLVHSIITNDMLNGET
IRLDGAIRMPPK
>SEQF2266_AEE67981.1 integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPARCFGTLAFMALLRSAATVSSFTLLSRITGLVRDILVARAFGAGPLTDAFWVAFRIPNLLRRLFAEGAFAQAFVPILG
AARTERSDAEVRTLLDRVAVLLTAALMLVTLAGVVAAPWVVTAMASGLRSAERGAEFGAAVWMTRVMFPYILCMSLIAFA
SGVLNTWRRFAVPAFTPVLLNLAMIAACLWLAPRMDVPIYALALGVMAGGVAQLAVQWLALARLGLTPRWSLDLRQAWRD
PTVQRILKQMAPATLGVSVAQISLLINTNIATWLQPGSVTWLSFADRLMEFPTALLGVALGTVLLPSLSAAHARADQDGY
SGLLDWGLRLVLMLGLPAALGLALLSDGLVATLFHYGAFQAQDVQQTRLAVIAYSAGLIGLLAIKILAPGFYAKQDIRTP
VKIAIMVLVLTQLLNAILVPWLAHAGLALAIGLGACINALALLTGLRRRGVYRPGAGWGRFMLRLVPALAALAAVLLAAD
RHIDWIALQPWPGLRALWLGGVLLACMLAYFGLLLAAGMRPRDFTRRGARWRM
>SEQF2266_AEE67982.1 hypothetical protein BPTD_2728 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTAANTPPLSDQVVDWLLLLRSGQATRTDYARFLAWRNANPMNENAWQQLTGTLAGANTGRLGDAYPTGYDGADQAPPA
ELPAETLAMPARRHFLSSVGALTLGGAGLAAAAYVGNSFYPLNALAADAATNTGERRRYMLSDGSELLLDARSRVNLEFT
ATYRRLHLLEGAVSVTVRADPYRPFSVQTAEGVVRSLGTRYMVRQQVRRTLVVVHENDVEIETVANARGIVRAGTGARFD
ATRVDTPRAGLAAHAAWENGWIEAHGRPLADVVAAMRPYRRGTLRVSMAAGGLPVSGTFPLDDSDATLVALQASVPIRVT
RLTPWFVSIGVATA
>SEQF2266_AEE67983.1 30S ribosomal protein S20 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANTAQARKRARQSVQRNKHNSSLRSMLRTAIKRVRQSIATGDKAAAGETLRKATSVIDSVADKNIIHKNKAARHKSRLA
AAVKALA
>SEQF2266_AEE67984.1 alpha-dehydro-beta-deoxy-D-glucarate aldolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTMNSPLPNRFRQRILAREQLIGYWLSLASHITAEVAGMADFDWLLLDAEHSPNDVPLLLQQLQALQGSASAAVGRPSW
NDPVEIKRMLDIGFYNLLIPFIDSADDARRAVAAMRYPPQGMRGVSVAQRSNRYGTVTDYLRTINDNICVLLQIESRPGV
EAVDEIAAVDGVDGVFIGPSDLAAALGHLGNPGHPEVQEAIRHLHGRVAAQGKAVGILAPVQADARRYLDMGAHFVAVGS
DLGVFKQATFALRAAFPA
>SEQF2266_AEE67985.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE67986.1 putative malate dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPESGMEADMVAIGRVREQIDRVLRAWGMPEAPAGVTADLMAETDLLGIDSHGISMLPSYEDKLRAGTLRIDAQPRLVRE
GTASALLDGMGGLGHPVVAQAMRMAVDKAFEHGVGAVSVRNSHHFGAAGVYARLAVQRGAVALVTSSATTLIMVPTHGAR
PMLGTNPIAFGAPAAHNDALLLDMATTTVAANKVKVYDYYGKPLPPGWAVDGAGAGVTDSAAAMQFIFQRPEGGLTPLGG
TAEMSSHKGYGLAIMAQVLGGTLGGSLMAARHAARRRPDDPDDVGHFFLALDPDAFRAGGSFESEMDDLIDTLHDTPAAD
PAQPVLVPGDPEAAERARRLRDGVPLAAALRERLRRICERSGAEYVLDAG
>SEQF2266_AEE67987.1 lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLKTMTLAFAVTGLGVLAGCSSPSVVQQRDGSQVVTPDEPKYNEDTGFYEYEKDGHKVQMNKDDVKTIEEVK
>SEQF2266_AEE67988.1 threonine synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKYISTRGGMAPQSFSDILLEGLAPDGGLAIPEQLPQVDAATLESWRGLSYADLAFEVLSLFATDIPAEDLRGLTRAAYR
QGVFKSEDIVPVRELGQGLQLLGLSEGPTLAFKDMAMQFLGQVFEYVLTRRGTTLNIVGATSGDTGSAAEYALRGKQGVA
VFMLSPHGRMSAFQRAQMYSLQDENIHNIAVRGVFDQAQDIVKQLAGDLAFKTRYRLGAVNSINWARIAAQVVYYFHGWL
RAAPKGGEVSFAVPSGNFGNILSGHIARGMGVPIRRLVLATNENNVLEEFFRTGGYRPRGPEHTYATSSPSMDISRASNF
ERFVFDLVGRDPGRVASLWADLARDGSFDLSALKPQFETRYGFVAGASSHADRLQTIRNTFDETGVLVDPHTADGIKVAR
QFVEPGVPMLVLETALPAKFAETIEAALGRTVPPPADLADLESLPQRVTLMDCDAQAVRAFIEAHAKV
>SEQF2266_AEE67989.1 homoserine dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPMKVGLLGLGVVGGGTWAVLARNAEEIARRAGRRIEVSRIAVRDVAKARSRVGDGVEISTDGFALVRDPAVDIVVELI
GGDTLARELVLEAIAQGKHVVTANKALLAKHGNEIFAAASARGVMVAFEAAVAGGVPIIKAIREGLTANRIEWVAGIING
TTNFILSEMRARGLPFADVLAEAQRLGYAEADPTFDIEGVDAAHKLTLLASLAFGVPVQFDKAYVEGITQLAQEDIAHAE
RLGYRIKLLGITKRRVDGIELRVHPTLVPAERLLANVEGAMNAVLVRGDAVGPTLYYGQGAGEEPTASAVVADLVDVTRL
HTADPGHRVPHLAFQPDALSDLQILSIEEVSTSYYLRMRVDDQPGVLADIARILADRSISIGSMIQQPARIGGADIIFLT
HEAVEGNVNQAIEHIEALPFVRSKVTRLRMENLT
>SEQF2266_AEE67990.1 aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKFSRIERLPPYVFNITGELKMAARRRGEDIIDMSMGNPDGATPQHIVDKLVEASTRPDTHGYSVSKGIPRLRKAICDW
YMRRYAVEFDPDSEAIVTIGSKEGLAHLMLATLDRGDTVLVPNPSYPIHIYGAVIAGANIRSVRMTPGIDFFEELERAVR
ESIPKPKMMILGFPSNPTAQCVDLSFFERVVALAKEHDILVVHDLAYADVCFDGYVAPSIMQVPGARDVAVEFFTMSKSY
NMAGWRIGYMVGNRELVGALARIKSYHDYGTFTPIQVASIAALDGPQDCVNEIVAQYQRRRDVLARGLHEAGWNVEIPKA
SMYIWAQIPEPYRAMGSLEFAKRVLSDAKVAVSPGIGFGEYGDEYVRFALIENEQRTRQAVRGIKDMFRKDGLLK
>SEQF2266_AEE67991.1 hypothetical protein BPTD_2739 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLHTDPATALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAG
AGARPANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGDS
>SEQF2266_AEE67992.1 hypothetical protein BPTD_2740 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPLIGKPAPLFTAESTIGPVSLDQCQGRAVVLYFYPKDNTPGCTTESQDFRDLYEDFLAASTIVLGVSRDSLKSHENFK
TKYELPFPLISDADETVCNLYGVIKQKNMYGKQVRGIERSTFLIDAYGVLVQEWRGVKVPGHAKEVLQAAKSIG
>SEQF2266_AEE67993.1 hypothetical protein BPTD_2741 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPMPLPKLPNRPAAILTFPSGDTARAKAARTNSKPAVAGNTDEPLLQPELAGLAPARKAQQKAPARPVAAPAPAPAPAP
APAANRPAARPAPARKPRARTDSAARKLFVLDTNVLLHDPSSLFRFEEHDIFLPMMTLEELDHQKKGMSEVARNARQVSR
SLDSLVQDADNLDDGLALNALGNKDATGRLMFQTTAIHSTLPSDLPMGKADNQILGVVRALQERHPQREVVLVSKDINMR
LKARALGMAAEDYYNDHVLEDTDLMYSGVTQLPEDFWNKHGKDVESWQQGGTTFYRIRGPLCAQFLVNQFVYFEGQMPLY
AQVREVSGKTAVLATLRDYTHGKNNVWGITARNREQNFALNLLMNPECDFVSLLGQAGTGKTLLALAAGITQVLETKRYT
EIIMTRVTVPVGEDIGFLPGTEEEKMLPWMGALEDNLDVLNMGEGEGGDWGRAATMDLIRSRIKVKSLNFMRGRTFLNKY
LIIDEAQNLTPKQMKTLITRAGPGTKVVCLGNVAQIDTPYLTEGSSGLTFVVDRFKGWPHSGHVTLQRGERSRLADYAGD
VL
>SEQF2266_AEE67994.1 hypothetical protein BPTD_2742 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPLPVGITMGDAAGIGPEIIAKACAQGLGAPAVVYGDPAIMRRATELLGARLRVLELAAIDQASGQPGCIEVIARGTP
LPPDLPAGRVSAAAGQGAYDYLCAAIDDARAGRIRAIVTAPLNKKSMQLAGIDQPGHTEILAERTGTRDFAMMLANDELR
VLLVTIHIPLAAVVAQITPQAELRAIRLADRACRQMGVTRPRVAVAGLNPHAGEDGKFGREDIDIIAPAVAQARAEGIDA
SGPWPGDTVFMRARRGEFDIVVAQYHDQGLIPVKYLGLDQGVNVTVGLPFVRTSVDHGTAFDIAWQGIADHASLVAAFDL
ALAMT
>SEQF2266_AEE67995.1 hypothetical protein BPTD_2743 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRIARFLPDRFTLLLVATVIIASLAPAYGQGIVAFGWITNLAVALLFFLHGARLSRDAIVAGVTHWRLHLTIFSATFLM
FPLLGVALKPVLEPLVTPELYLGVLFLCCLPATVQSAIAFTSIARGNVPAAVCSASASSLLGIFITPLLVGTVVASAAAA
PISFDAVGKIMLQLLLPFVLGQLLRPWIGAWVHRRKALLKWVDQGSILLVVYTAFSEAVNEGLWSNTPIPALLGLLTVCC
IILVLAMAGSLLLGRLFKFDVADRITLLFCGSKKSLASGIPMAQVIFAGQAVGAIVLPLMLFHQIQLMVCAVLATRYGKR
PD
>SEQF2266_AEE67996.1 replicative DNA helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTPADPQLEYLRVPPHSIEAEQSVLGGLLLDNAAWDRIADVLVEEDFYRHDHRLIWHHIARLIGLARPADVITVNESLA
SAGKSEEVGGLAYLNALAHNTPSAANIRRYAEIVRERAMLRKLVSIADEISAAALNPQGKEARQLLDEAESKVFKIAQEG
ERGSAGFQEIQPLLTQVVERIDELYHRESESDVTGVPTGFADLDKMTSGLQAGDLVIVAGRPSMGKTSFSMNIGEHVAIE
QGLPVAVFSMEMGAVQLAMRMLGSVGMLDQHRMRTGKLVADDWPRVTHAVQLMQDAQVYIDETPALSSMEVRARARRLAR
QCGQLGLIIIDYLQLMSANSAGENRATEISEISRSLKGLAKELNCPLIALSQLNRSLEQRPNKRPVMSDLRESGAIEQDA
DVILFIYRDEVYNPDSPDKGSAEIIIGKQRNGPIGTVRLTFQGSSTRFLNFAPGTQY
>SEQF2266_AEE67997.1 hypothetical protein BPTD_2745 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNEPPLHHNAPPGLRAWLDGEQAAAIRSVKEVTVDGVPCVVKRRRPGVRRGISYVLRYLRAFFLALLCRILLGEFPRPSV
LLRNGLDYEAERLRRLLQAGCRVPEVWWQEPGLLVLEHVGDDLPFRLRQADEAGRIALAQALARDLAEFHGRGMWHGGAQ
VRNVTLRDGRLWRIDFEENIGGALSLPLAQAYDLYQTLASLVSLRKLPPEQASHLGKLVLDTYFAAHPDSEVRARMRRIA
RLICGAARLLRPLGGRLPWRDVRAFFRVAETLRLLLHP
>SEQF2266_AEE67998.1 50S ribosomal protein L9 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQIILLEKVANLGNLGEVVRVRDGYARNFLIPQKKARRATDAALKEFEARRAELEKVQAEKLAAAQALAERLNGFQLKIS
QKAGVDGRLFGSVTNADVAEGLRKAGFEAVEKSQVRMPNGQIKAVGEYLVQAVLHADVVADVVVLVEGEMA
>SEQF2266_AEE67999.1 30S ribosomal protein S18 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFFGKRKEKRKFTQQNPLFKRRKFCRFTAAGVEEIDYKDLDTLRDFVQENGKIIPARLTGTRAIYQRQLDTAIKRARFL
ALLPYTDNHK
>SEQF2266_AEE68000.1 primosomal replication protein N [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTLELSARVLECGAMRHTPAGLPALELLLVHESEVVEAGHPRRVELTISAVALGDLALLLADTPLGTEMQVQGFLAPAR
KDSVKVKLHLQQARRIAGSMGRDPLVG
>SEQF2266_AEE68001.1 30S ribosomal protein S6 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRHYEVVFIVHPDQSEQVPAMVERYQALVTGQSGTVHRLEDWGRRQLAYPIQKLVKAHYVCMNIECGQATLDELEHSFRY
NDAVLRHLVIKTKKAPAAPSIMMKSVEREEARKASAEAAATATAAE
>SEQF2266_AEE68002.1 putative GTP cyclohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSPIDPAIVMPDVQSSTDTRHIPIQRVGIRGVRHPMLVLAGDGAAQPTVANWTLTVALPAEEKGTHMSRFVALLEKYRA
TPMTPALFAAMAREMLPLLHAERGDITASFPYFINKSAPVSGVQSLLDYEMQWIARAVGEQVEFELVAQVPVTSLCPCSK
AISEYGAHNQRSHVTVSAIVDGDFRMDELIRLVEDEASCELWGLLKRPDEKYVTERAYDNPKFVEDLVRDVAARLKAHPG
IGRFRVEAENFESIHNHSAYAVVEG
>SEQF2266_AEE68003.1 1-deoxy-D-xylulose-5-phosphate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTELLDRILSPADLRQLDRRELKRLADELRGFVLESVSRTGGHLSSNLGTVELSLALHYVFDTPHDRIVWDVGHQSYPH
KILTGRREGMAHLRQQGGISGFPKRSESEYDAFGTAHSSTSISAALGMAVASRNAGVQRQHIAVIGDGAMSAGMAFEAMN
NAGVTPNINLLVVLNDNDMSISPPVGALNRYLARLMSGQFYAAAKNVGRAVLQHVPPVLELARRLEEHAKGMVTPATLFE
EFGFNYVGPIDGHDLDALVPTLQNLRALPGLQFLHVVTRKGQGYKLAEADPVLYHGPGKFDPAVGIQQAKAPARKTFTQV
FGQWLCDMAERDERLVGITPAMREGSGLVEFEQRFPQRYFDVGIAEQHAVTFAAGLACEGQKPVVAIYSTFLQRGYDQLV
HDVALQNLDVTFALDRAGLVGADGATHAGNYDIAFLRCVPNMVVAAPSDESEARLLLSTCYEHPGPASVRYPRGAGCGAA
VGEGLATVPLGKGLVRREGRRIAILGFGTLVQAALGAAGQIDAMVADMRFVKPLDRELVLELAARHDALVTVEEAAIMGG
AGSAVLETLAEAGVTLPVLQLGLPDAFIDHGDQAALLAGLGLDAAGIERAIRARFGALLA
>SEQF2266_AEE68004.1 geranyltranstransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQSHLACADWLRERAQHVEHVLDELLPGADIAPTRLHEAMRYAVLGGGKRVRAALVYAAGQACPVNGSTLAVGASMDRA
AAAVELIHAYSLVHDDLPCMDDDTLRRGRPTVHVQFDEATAMLAGDALQPLAFELLAGMPIAPALVVQAAQVLARAAGSQ
GMAGGQAIDLHSVGRMLTRDELQTMHSMKTGAMLACSVTLGGIVAGASSTARQALDSYAQAIGLAFQVVDDILDVTADTA
SLGKTAGKDAADNKPTYVSLLGLEQARALAQELRQAAHQALAPLGESGARLGQLADFIVLRDR
>SEQF2266_AEE68005.1 exodeoxyribonuclease VII small subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASSKQADPQTDARPLPQDFETALAELESLVSAMENGTLPLEQSLSAYRRGVELARVCQDRLAQAEQQVKVLEGDLLRPL
DPAALDDE
>SEQF2266_AEE68006.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSEINYKNDAIPMQPFSTRPPDPDGLPASQPARRKRAASAAGAASPDFITALARGLDVLRCFRPGVRALGNLDLARLTG
LPKPTISRITYTLTELGYLRYHADTGKYSPGYAVLALGFGVLASLEVRELAKAGMSELAVQTGGAVALGAFDNDAMVYVE
AMHGSPALYLRLPVGYRASLDTAMGRAYLAALPEAARQALLGRLGQAAPPPAVVARAVEELSAEGCCYALGEWQSGINAV
AVPFASVTGEGVFVMSCGGPLGLLPERTLREQVAPALRQAAARLAGGAG
>SEQF2266_AEE68007.1 hypothetical protein BPTD_2755 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRKGLQLLAALSLSLAAASVSAQSFPARPIKVVSPFPAGGATDVLTRLLTERMAKDLGQPMIVENKAGAGTSIGAAYVA
RENPDGYTLLMATNSTLVTNRYLYKELPYDPDSFVPIGMVGIGPLVLLASPKHGFKSTQDIVAYAKQHPGKLTFATFGAG
TSSHLAAELFKKQAGIDILHVPFKGATQALPALISGDVDLFFDMVATGMPQAEAGKIDVFAITSPTRLATLPKLATLTEQ
GYPNEMTAWFTFVAPHGTPEAVRARLEQALQATLKDETVRTKMLAMGIDPRSGTAQELSTQMKNEQPVVSQLIKQANIVL
Q
>SEQF2266_AEE68008.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTIEDRYARLDAARWLAALAVVLLHSAAQTVSDPAAYGSHAWLAANLYDSAARWCVPVFVMVSGALLLDPDQPHDARRF
YSRRMARVCAPLLFWTLFYLAWRTALDWWDDGRLDFSFWPRKVAEGAPYYHLWYLYMIVGLYLFAPLVRLLYARSQPRAR
ALWVVGILGVAVLDALYRRALGGGNGLFLTWFLPYLGYFVAGRLIFDGELRMPRPGLVLAASVAATAWGVSALSDSRALD
LYFYDYFSVTVPLMSLAAFQLIVGSPRLPALPALAPLTFGIYLIHPLFLDLAHRIGAARAWRPDAWGVPAITAAVFALSA
LASWMLRRHRLTRRLV
>SEQF2266_AEE68009.1 putative iron-sulfur protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDIGRMAHVVPARTQLPVSAYFDEARFAREQELIFKQSSLYVGHQKLVPELGDWRTLVQEDGGRALVRNQQGVELVSNV
CRHRQALMLGGEAGNVSGNANTRGSLKDTGGNIVCPLHRWTYNDRGKLLGAPQFDATPCMNLQRFRLRDCHGLLFEGPRD
PAADMAPLFARPEFDFGDYVLDHVEVHQCNYNWKTFIEVYLEDYHVGPFHPGLGRFVTCDDLAWEFNDWYSLQRVGVHQA
LAQPGSAVYKQWHDRLLDFRAGQAPDFGAMWVTYFPTHMIELYPHVLVLSTLYPKSPQETLNVVEFYYPEEIVAFEREFV
EAQRAAYMETAIEDDEIAERMDAGRKALMLRGANETGPYQSPMEDGMQHFHEWYRRVMGETED
>SEQF2266_AEE68010.1 putative cation transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQSSATPKPPATPRRLDPEDAQHALAEVQECLRRQHLVEDLVHRQEQGDDKAHLVEDLVHRQHEAELATLINGLHPADI
AFILESLPKDERQTVWRLVSTEHDADVLIEVEDWVRESLIEAMDRQDLVAATGSMDADELADLAPDLPPDVVAEVQKGLT
EEERAQLLEAMGYPEDSVGAIMDFEMVRVREDVSLEVVLRYLRRLHELPDHTDQIFVVDRQDKLQGVLPIATLLVSEPDT
EVRAVMNSDFLTLGPLDSDADAASAFERYDLVSAPVTDEQGRLIGRVTIADVVDVIQEDSQEQALSRAGLQEEDIFAPVL
MALRNRAPWLLFNLCTAATASFVASRFEDTVSHIVILAFLMSIVAGIGGNSGNQTMTMIIRALAVGRITGRNLWQLVKRE
MLVTLLVGLCGSLVAALFAWAISDSLSIAVVMMAAMICNMLVGASVGVMVPMLRARFGKDPAIGSSVLLTFATDSLGFFI
FLGLATIFLL
>SEQF2266_AEE68011.1 putative thioesterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNPPKSPFTSLPSGREPVLRVMPMPADANIHGDVFGGWIMAQVDIAGSIPAARRAAGRVATVAVNAFQFKQPVFVGDLL
SFYTSITRTGTTSVTVSVEVYAERQRLDAEVVKVTEAVLTYVATDEARRSRPLPTL
>SEQF2266_AEE68012.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTTTSTLPLPTPWRDKLNGILFVALMAAAVVQLADLPFIRQFGFSPLVVGIVCGMLYGNFLRGTMPADWGAGVHFTARR
LLRIAVAFYGLNISIQQIAAVGLPGLAVSVGVVASTLLIGTVAGQRLLGLDRDTAMLTAAGSAICGAAAVLAFEPTLRAA
PHKSAVAVATVVLFGTLSMFLYPVIYHAGWLPFDTQALGIYIGGTVHEVAQVVGAASNIDPATTEVATIVKMTRVALLVP
VLLVLGFWLRASAAAGADGKSHAKLPVPWFAIGFLVLAIVNSLDILPSDLVTAIRKLDVFVLTMAMTALGIETRFAQIRK
AGPRVMALGLVLYAWLVFGGYGIVKLAT
>SEQF2266_AEE68013.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPEQLLTFASVADAGNISRAAELLHLSQPAVSGQLRMLQDWFGEPLYRRSGHGIVLTAAGERLAEHARQLRQVYSQAGA
LRDAWRGLETGSLRLGASTTPASYLLPGLVAAFRARYPAVGVHLSDGNTRQIVERLPSLDLAFIEGEVPAGLPADTVVHP
WRQDEVVAIVRSDHTLAGNGAATLRDLAAWPQVTREPGSGVRGLVERAFASAGLAPAVGLELAGVEGVKQAVRAGLGVGF
VSIMSVRHEDGSLATLRLLPRPLTRTLSILAPHASAAARATQRFLDACLALP
>SEQF2266_AEE68014.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLIEPIVAWRQDIAAIRRDIHAHPELAFEEFRTADVVAARLQEWGIEVDRGLGGTGVVGIIRGTREGPRAVGLRADMDA
LPMQEANTFEHASRNPGKMHACGHDGHTAMLLAAARFLSQQRDFAGTVYVIFQPAEEGGGGAKRMIDDGLFTRFPMEAVF
GMHNWPGMKVGQFGLTAGPIMASSNEFAIHIKGKGTHAGMPHLGVDPVMAAVQLAQSLQTIVTRNRNPLDAAVLSITQIH
TGSADNVVPNEAVMRGTVRTFTLETLDLIERRMGEITRLTCAALDCEGELEFRRNYPPTINHPAESAFCAGVMRGIVGAE
NVNDHVQPTMGAEDFAFMLQDKPGCYVWIGNGSGDHRDAGHGAGPCMLHNGSYDFNDELLPLGATYWVELARQWLARP
>SEQF2266_AEE68015.1 long-chain-fatty-acid--CoA ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEANTMLRPWLAHYPAGVPHEISPQDYTSLTDLLDQACRRHAGQVACRSMGSDMTYAQLDAHARHFAAWLQGRGLARGAR
VALMMPNVPAYLVCLLGTLRAGMVVVNVNPLYKADELQRQLLDSGAETIVILENFAHTLQAVPDRGALSHVVVVGPGDLL
GGLKAPLVNLAARYVKKLIPPWRIDGAHRLPDALRDGARATFTPPALGMDDLAVLQYTGGTTGVPKGAMLSHGNLVANVL
QTEAVAQPVLHDLHGRQLTIISALPLYHVFAMTVCGLYGMHAGMRNLLVINPRDQAALIVAWRQAPINIFPGVNTLFNAL
VNNPDFAKLDFTDLRLTLGGGMAVQRQVAERWLELTGHPLIEGYGLSETSPVATVNPTDAKTYSGSIGLPLPSTDVAILD
DDGAPVPLGERGEVAIRGPQVMLGYWQKPEETRNVMTADGFFLTGDIGIMDEAGYTRIVDRKKDMIAVSGFKVYPNEVEA
VIAAHPGVLECAVIGVPDEHSGEAVKVFVVKKDPALTAEAVLQWCEERLTGYKRPRHVEFRDELPKSNVGKILRRELRPE
AGS
>SEQF2266_AEE68016.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68017.1 inositol monophosphatase-family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKHHAVATKYLAAGPNSPWLRNALRAWAYTWAMQTSAQRSPASATLDLGAAVDAAVTAAHAGAAILQSYAHHRSDLVID
RKARNDLVSQADRESEAAVISVLRERTPQFGIVAEETGGAAQGPATTWYIDPLDGTTNYLHGIPHYAVSIALVAHAGTRV
VAGADLQEDTPVIGVVYDPSSEELFTAVHGIGSWLNGHRISCSRTSTLDDAVLATGFPFRDFSFAHQYMPMLHDAIRRTR
GVRRMGAAALDLAWTACGRYDGYWEMGLAPWDVAAGTLLVREAGGVCTDMMRQQSWPSGGRVVAGNRHIHGALFDMVSPH
LDAPAPDSSQA
>SEQF2266_AEE68018.1 hypothetical protein BPTD_2768 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPKFDFAHTTQLDTVELLTSRPSRIDFDAGDGLHLVVEAHAPGVYRLRCGEASLLTDEKSSARARAVAEMLLARQEAVG
EATLTPRDDGGGWRIAQGDTTLEVLSDPVRVKLYRGDQEVFASEVSAHTPAFGHNALDETDEAVWTVGLGLEGAEPVYGL
GETPGDLNRRGEAVVSDDPEHRALPLAWSPRGWGVYANTMRRVEHAVGLEPAEGAYVLTIDDPVLDLFLFVGEPAEILNQ
YTALTGRAGQPVLWAMGAWLQQADGQMPTETAALVARLRDQQIALDAVTLALPAAWSFQADKPVLEWDAQRFPDARQMLA
LFHKHHVHVAASGFPGVLKSSLLFEELEDRGWLLTRDDGSAQVFDGNAATGGQPYGLLDLSYRDAYAMWVERHRQLIEDG
LDAPACDAQIAIPDGVSARNGETGPALRTMYPLLARRALFDAVAGLKVPPEGVVPSTDLFPAAQRLPWQVGPRVTNDWAG
LEHSLRTALSIGASGVPVQVHALGSAQAPLEGMTAELYLRWLGACVLSANFSFQGVPGLLPDAFGEEALAHARTWMQWRY
RLIPYVLGAIEDSARTGLPVQRSMAMSFPHDPHAHAWDLQYLLGPALLVAPVTQPGKQVRVYLPKGDAWWDLNTGHRYEG
GTTWTVECELDRYPVFGREGHMLCLGPAAQHTGEFNSARILDEVWMFGMPVHNPVVMRNKIRVMQMQGSSYIKGLEGLRI
LPSEGLEVKRRGAEVRISRAR
>SEQF2266_AEE68019.1 ABC transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIHIENLSKTYATPHGRFEALRGINLHIQQGEVFGIIGPSGAGKSTLVQCINLLERPDQGSIAIGGQALVGLGEAQLRNQ
RRRIGMVFQGFNLLARRTVYGNVALPLEIAGVARAEIPARVERLLALVGLEHLRDRYPSQISGGQKQRVGIARALANDPD
VLLSDEATSALDPETTHNILALLRDINRKTGVTVVMITHQMEVVREICDRVAVLSHGEVVELGSTREVFAAPRHEVTRAM
VSAATASDLSEATLAAVKQRIDALAAAEPGRAVRLWRLSLKGVAAGEPLWSDLAREFALDVSLVQARVEDIQGVAVGTLF
VLAQGAPHAVKDALAALAAREITVEEIAHEPATDRSAYHVAA
>SEQF2266_AEE68020.1 ABC transport protein, inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVGVSGAISVVVGIPLGVLLIVTGRGGMLQNLAVNRVLAAVVNGTRSVPFIILMVAIIPFTRLLVQTSIGTTAAIVPLAV
AAIPFMARVAENAMREVDPGLITAARAMGTSPLQIICKVLLPEALPGLVAATIVTIVSLIGYSAMAGAIGGGGLGDLGIR
YGYQRFLPEVMLAVVVVLIALVQVVQSLGDWLVRRMSHR
>SEQF2266_AEE68021.1 hypothetical protein BPTD_2771 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTKFLKTLAAFALGAAVFAQPALAQDKPLKIGVTAGPHAQIFEVVKQEAAKQGLNIQVIEFSDYVQPNVALASGDLDAN
SYQHQPYLDNANADRGYKLVSIAKTVIFPIGVYSKKVKNLNELKDGARIGIPNDPTNGGRALLLLQEHGLIKLRPEAGLK
ATPIDVVENPRKLRFIELDAAQLPRSLDDTDASAVNTNFALEAGLDPSKDALVRESAESPYANVLVVREQDKDRADLRKL
VSIYQSAPVREFILGKYKGAVVAAW
>SEQF2266_AEE68022.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68023.1 putative alcohol dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAMFEFCTHARTLVGAGASDALGETLAARWGASRVLLVTDGALVSLGLAGRLRDALTSAGHTVAMFDEVVADPPESVVER
AITAARDARAQMIVGFGGGSSMDVAKLAAAFAGTTQDLRQAYGIGLVAGPRLPLVQVPTTAGTGSEATPIAVVTTGEGAK
AGVISPVLYADLAVLDASLTLGLPPAITAATGIDAMVHATEAYTSRVLKNPISDALAREALRLLFRALPVACRDGGDLAA
RQDMLLGAMLAGQAFANAPVGAVHALAYPLGSAFHVPHGLSNSLVLGPVLRFNSLRCETQYAELADVILPGHAGGVAEKA
AAFVQAMAEVAGALELPTRLAQVGVTAADIPALAGLALQQQRLLANNPRDVTLADATRLYEEAF
>SEQF2266_AEE68024.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68025.1 hypothetical protein BPTD_2776 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGQTQGKAVIARERISFWGGFDPQTGRIVDPYSSLRGRDISDCVLILLSSKGSSGTSGMLSLATRAGHAPAAMIQVEMD
PVTVMGCLVNNIPLLQASGFDPFEQIQDGDLVRIDGENGTITLTPGQA
>SEQF2266_AEE68026.1 hypothetical protein BPTD_2777 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MILTDEQQGLLNGDAGDVVAKYFTWLVEWGRLMGAQRLVKVDSVHTSGITAQDRVAGAVSPEARKKTLEQVIEFTSVRMR
APTATHVARVCVEDDKGGGLSAEDQEFQKLVIDRARDAGIQLTWTCAPYIAGILPSKNQICAWTESSAVVYINAMIGARS
TRNGTESAIAAAMSGWFPEFGVLLEENRQADLIVEVEAAPSEELCDWGFLGYFAGEVSGLRTPVLDQLRAPSLEEAKQLS
AAVATGGGCTMFHIAGVTPEAPTLDAVARRPLERIRYTAADRARIAAKLNTLTSERIDYVVLGCPHATLHEIQVIASQLE
GRRVSPNVRLEVWTAWAVRAVAQRMGLVDVIERAGGKVLTDSCPSITRSGHGRRMVTNAVKQGNYLQGMTGHEVAVGKLT
DVVSAAMTGTWQGL
>SEQF2266_AEE68027.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSTKRPASRADEITQELVRMIQLADARRIAKLPTEMELAAQLGISRPVIRESLSRLESLNMVTRRQGSGLYIVAPEKRS
PEALVLLEQSAPLSPRSIAEAMSVRAILELETGRLAALNHRQVDLDRMAAEIERLAATGARGLEAAEADEAFHRALSDAA
GNVTLSQVLDLFLRLSWRRRVEYFSQPKLGKQSIIEHQEILNAVASGDTDAVSTAIRTHLNSAERFWDSKYVKKKS
>SEQF2266_AEE68028.1 hypothetical protein BPTD_2779 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MERRRLLLGGLAAGIAAPLLARRAMASPRKYPGKPIRMIIPFPAAGVTDISARLLAAAMAEELGQTIIPENKPGAAGNIA
AKYVADAAPDGYTILFNNSATHGINPTLFKSINFDAERDFTPILYCSSSPNLFVANKNFPGDTIADFVDIARQQGPAVMM
ALGSLGSSQHMAAELLCHVTATQFTTVPYRGGALALQDLIGGTVQTLCDGYPSSIQHIRRGTIKALGVTSPERIPSAPDI
PAVAETLPGYSAYGWFGLVGPAGMDADVVAVLNQAGNQALQDPELRTRYAEVGATLHGGPPEVFKQHIQDEIKRWREIII
ATNAKPE
>SEQF2266_AEE68029.1 hypothetical protein BPTD_2780 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPCRVVPNTPAIFCHGKRAMFFEDIERIRSALQRSGRKYLTPRLEAVLGTVYQLKRGEESVYLCVEPSMAVRKHAHRPHC
TIELGAPDWDTVLSGERSIMSKVLAGKCGFLKHERRYIMHFSMLLQAVLLEEKQ
>SEQF2266_AEE68030.1 putative ABC transport protein, inner mebrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKENRLGMLLLSPALLVLTALVIVPLLATIAFSFFDLRLGESSAKFIGLQNYGDLLASEPFWRSLRITFLWIVLSVIPQL
ALGTIIAVLLDRVTRFRAFLRGAIFLPWVIPVAVVAYMWQWLLTPETGLVSGIAGGAGLEGLARFPFLSSPDTAFATALI
VSAWRGIPFVVIMVFAALQGISDEDYHAARVSGGNSIQCFVYVTLPYLKGLLLILAVIRTMQIANNYSLMALLTNGGPAD
STRILPLMIYELAFREFALGKASALGVIALALTCLCIAFMMRRRHADN
>SEQF2266_AEE68031.1 ABC transport protein, inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAWLVGAVLFVPIAWMVLTAIRPEHELYQVPLRILPGALDMANIQSAWYEKSFGQFFFNSAVNSVLSVLFSMPIGILAGY
AFSRFEIRHSKYYRAYVLFAYMVPIIILVVPFYLIAVWLNIYNTRMGHVLGLSTYAIPFATWVMIGYFEQLPKEVEHSAA
IDGADRMKTLIYILAPMIKPGVVATALLTFILAWDDYIFALILLDSETLRTLPLAIGYLSSDYELTDGLMMAMGTITTLP
ILLLFVFFQKYFVGGMTSGAVKG
>SEQF2266_AEE68032.1 ABC transport protein, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSTSTAIQLNSVSKSYGGSPILDDISLAIAPGEFVVILGESGCGKSTLLKIIAGLEQPTSGAVRIGDAVMTDVPPKDRR
LAMVFQSYALYPHLKVWENISFPIKMSLWKYAYSLPLLGRLFPNRKRILKTMREAAERAAGKVRLTPLLDRKPRALSGGQ
RQRVALARAIVDGREICLMDEPLSNLDTQLRASTRREIADLHRDLGHTIVYVTHDQTEAMTMGTRVILMREGRIEQDGAP
AELYEQPATTYAAEFLGSPRINFMRVASAQFSQAAAQAVVTLGDGRCPLDPHGDLLIGVRPDHLEITPDAQGEFLFLSSE
YLGGKTIVSLKRESGETMVQAFGSDRLDRAQRYSVRFEGRHAMCFDPQSGRRIRE
>SEQF2266_AEE68033.1 ABC transport protein solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKRVASLLVSSLLYSGCAMADGSIVVWMTDSRPGYKKWLETEAAAFKAKHPGVKVSVVQMSPNDAYLKIPAAAAAGGLP
DVIWTTYGLAPWLDGMKGGKLADVSDLIDRLGKNRFDEDALKQWSYRGAVACVPVARTPTYLMHRADLFKKAGLAAPESW
EDVIRAAQKLNDPANGKYGIAMPGKTDFSPRFAYGMILYSMGGSTFDTQGNPIFESPASIDALKVYKQLYAYSPPGSLNF
GFSEIQRALAQGRVAMTISNPSSMATFQRTNRDEGSTLALALPGKVNRTIQNQRGWCIADGKNSQDAKAFVEHLFSTSSF
AAYLDAASISSFPVYHDQAAYDQFQASNETVKRFPGATDFIRRHTVGTMPGIDGVGLTPKSGDLISSGQIESAINRMLAN
DMSKQETAAAMQKETLRLLN
>SEQF2266_AEE68034.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAPFSICVSILLLVGDSNRAGVTARYVSEQLGLSLSTAYRWIDMLRQSGLVVRHPNTRKLHLGPVAFDLGVQAVARPYVP
PAIEEVLKPIASRHACRLHLVRCSGDYSVLQRTYFDRAELEIVPSKVAAMRLLGIGPAGVCLLSRWPDYEIDRYLVRNQD
GLLAAGYQGADIRERVRQCRKLGCFVTRSVLTPGYTAVVIDFEVDGVVYGVSTASAGSEGGKQFHAIREALDRARASLAT
QAIPEFALHG
>SEQF2266_AEE68035.1 MerR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMRSAQAVRRPDLLSVGEVAARTGLAVSALHFYEAKGLIASTRTAGNQRRYARAVLRRVAVIRVAQRMGLPLAAIAQALA
TLPTSRAPTVADWRRLSRAWRQELDQRILGLTQLRDQLDGCIGCGCLSLRECPLRNPDDAMARLGAGPHFPPHE
>SEQF2266_AEE68036.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLASVVPELAFLSPRIMDPRTDFADGLTRCGWLDHSVDYVAYHDHEWGRPQADDRALFEQLSLEGFQSGLSWRTILNKRA
AFRRAFADFDMERVAAFDERRVEALLQDAGIVRHRGKIEAVINNARRALALRDREGSLAAFFWRYEAPPRGADAPFEVLA
CTAESEALSKALKKQGWSFVGPTTVYAFMQSVGMVNDHHPQCHHHAACEQARYRFQRPD
>SEQF2266_AEE68037.1 hypothetical protein BPTD_2791 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRKKKIFLGVAGAVLVLLAAVLVVLATLDWNRLKPTINEQASAALGRPFAIQGDLSVQWACEPGQGGWRGWVPWPHFVV
HDVAIANTVWARDPNLLTLRRGEFRLAPLPLLRQRVVIRRIQLSGLRADLQRRADGVANWEFTMPDTGEPSPWKVDIDAI
GFDQGAIRYADAIAQADLDVLVDPLGKPVPFAELAGAPAAGGAADQAAGKADSGKAADAAAPAAPPDYAFGWQVNGRYKD
LPLEGTGKVGGMLALRDARQPFPVQAEVAIGSTRIAVAGTLTDPMSLGALDLRLKLAGASMANLYPLTGVTLPDTPPYST
DGRLVARLQDSKGARFEYRDFNGKVGASDLHGDITFALQQPRPRLSGKLSSRLLRMADLGPLIGVQSGGAKSVKAEGEKA
VAQPADKVLPVQEFRTDRWRVMDADVELRGERIVHSDRLPISDLTAHVLLDDGMLTLAPLRFGMAGGSLDATLKLDGREA
PMSGNVHLAVRRLRLKQLFPNVQAMQKALGEVNGDVALSGQGNSVAALLGSASGETKLLVNDGVISRALMEIAGLNVGNY
VVSKLFGDDEVKINCAAADMGMTCGVMTPRVFVIDTENAVVNITGSIDFRKELLNLDIDPDSKGFRLFSLRSPLYVKGSF
KKPDAGVHVGPLAARGAGAVALSVLLTPAAGLLALIAPSTNDENHCATLLTEMRKPARAPRR
>SEQF2266_AEE68038.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAERGRPRSFERTEALRQAMEVFWSKGYEGASLADLTSAMGINAPSLYAAFGSKEALFREAVQRYADTEGARTRRALLEA
PDARAAIEGMLLAGAQTCTLNGKPPGCLMVLGATAGPAQHAPVRGWLCEHRRTMQDLILQRLEQGRRDGEIGPGADLAAL
AAFYATVLHGMSIQARDGADRAALQAVARQAMHAWDALAHPPAAAR
>SEQF2266_AEE68039.1 putative short-chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELAMAALDGKVAFITGASRGIGAAIARRLAADGADIALTYVSAADKAHALVEELRAAGRRAHAYAADAADAGQVREAVA
RAAADLGRLDILVNNAGIFLAGPVEDISADDYDRSMDINVRAVFVATQAALPHLGEGGRIVNIGSCLAGHTGRPGVALYA
AGKAAVAAFTRALARELGPRGITANVVHPGPIDTDMNPAGTDQAAALVQMLAVPHYGEPADIANMVAYLAGPQARYVTGA
ELSVDGGYAA
>SEQF2266_AEE68040.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68041.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIVHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68042.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDLKLFEDLIALAQTGSFVRAAELRHVTHPAFGRRIRALETWAGAPLVERGRTPVVLTAQGEALLQAAGQVVEQVDRVR
EQLRSAGRQEERILRIGTGRSLARTLVADWIARLRQRPARLLDGAQVELSTGVMQEMAALLEQGRVDLVCCYEHPALSVQ
LTPGRFRYMTLGIDKLVPVCQADARGRPRHALSEGGPAAPLITYSGGLAMARIAGDRLETFPYALAPFVRCDSLDAAHGM
AQKGLGIAWLPWSMVAGDCRRGVLAALGGRAEEIAFEVRLYRPRTRLSALAEAVWECTQRGR
>SEQF2266_AEE68043.1 3-methyl-2-oxobutanoate hydroxymethyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVPTAAKRITTRQLRMRTPDEPIVALTAYTAPIAGLLDAHCDLLLVGDSLGMVIYGMETTLPVTVDMMIQHGRAVMRGS
QRACVAVDMPFGSYQEDERQAYRNAARIMAETGASCVKLEGGAEMASTVAFLVERGIPVMGHVGLKPQSVHGHGGFRTVG
RGAEAEQVMADAQAIAAAGAFTVVIEGTLEPVARAITEALPVPTIGIGASPACGGQILVSDDVLGLFSDFTPRFVKRYAQ
LGPIIEQAAAAYASEVRARTFPAPEHCTGMPAPDGRPA
>SEQF2266_AEE68044.1 outer membrane porin protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKTLLAVALASGFAGTAQAAATSVTLYGLIDSGIGYEQVKGPDGFKQSHVGATSGVSSGSRWGLKGAEDLGDGLQAVFT
LEAGFNNQTGNSEQSGRLFGRQATVGLSSSAWGKLEFGHQTNMASKYMADISPFGTDYGMAGIGSTFGATKSLRLDNMVM
YQSPDFSGFRFGLGYSFNADTTKGDNFSTSDNPRVVTAGAKYASGPLTLVATYDRLSPNHAATNGESQSVQEYALGGMYD
FEVVKLHAAWGQTFDGWFSGYSMGTNPSFAGYSKLPSLAYKDGAKVDSLMLGATVPLGKTKVFGSWQRADPKNDKLTGGD
KTYNIFALGATYDLSKRTNLYAYAAYGDNYAFHDEVRNTAVAVGLRHRF
>SEQF2266_AEE68045.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68046.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQYWEGKAVVVTGAARGQGAAEVLRLLAAGAIVYALDVLPADDACWRELAEAAGPAASRLHPRVADVAREATWSALAAD
LAAAGAPLYGLVNNAGITLRKTVTETAPDEWRRLLEINLDGPFLAIRALAPLMPRGAAIVNTSSTAGLTGYFSAAYTASK
WGLRGLTRAAALELADQGVRVNTVCPGLVETPMIMQPNAVHDAARARLFHDGNRDATPLGRGADPDEIAAAVVFLLGPDA
SFITGADLPVDGGMTGGGIY
>SEQF2266_AEE68047.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQYQDLAGKIAVVTGAGGGIGRAIVAALREQGARVVATDLDPQALAQAMRESGQDVDCRALDVADPAASRALADAVAQQY
GVLDIWVNNAGFMARMPALELDEQTWQRTLDINLKGTFFGAQAAARHMTRQGSGAIINLSSYAGIKPRPNCADYASAKAG
VAHLTQCLALEWSPLGVRVNAIAPGFIDTPMSSWMHGDAQTYTEYIARIPSRRLGQPEDIAAATLYLASQASSYVTGHVL
MADGGVSKA
>SEQF2266_AEE68048.1 membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQQIMETQDLRRRLTSLRAAAVGNALEWFDWTLYGTFSAYLAMNLFDPADPTSALLATLGVFAGGFLARPVGGWLFGRI
GDRYGRKFTLVLTMCLLALTSLAIALLPTYEQAGVYASVLLFVCRLTQGLAHGGESGVAYTYVAEIAPPARRGLWSSSVF
ISVTLGVMAATALAALLTSMLGKEAMEAWGWRVGFGVGALLGVYALYMRRSASESEVFEEHARQAGGQPAGPAMTRGQAL
RIARNIVMIAVASNATYYTWVTFAPATAIATRGMDPSGAYTASLIAQLVCLLWLPVCGWLADRYGRKPIVMAFGLGVALA
VFPVAHIVTAQPWTLFVAQLIGLLVWALLAAIFPAFIAEQVPTQARAMGVGFISSLSVAIFGGTAPYINAWLGAHDLGWV
YTAYVAALGVMAFIGAFLIRETAGLDLNDIPLPGEPDNAAVSRRAAYN
>SEQF2266_AEE68049.1 hypothetical protein BPTD_2808 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSESWQGRAAPNGSAEPIEFMLDGDCIRGTFYRPAGAGAPVPAVVLAHGWSMVAGGDLEDYAAAVVNRGLAALTFDFRNL
GKSGSLPRQEIDPYRQVEDFRAAISYVRGRPEVDRERIGIWGSSYSGGHALTVAAIDRRVKCVVSQVPTTSGFSAAQRRV
RYDKAQALQAAFEADREARFAGAEPATLRMVDPDPEAPVAYPGPDSYRYMTGEARRCPQWVNAVTLRSLELARTYEPGVY
ARRIAPTPLLMIVAASDGLTPADLQQDAFNNAQQPKELLLLPGGHYSVYTDHFDRTSQAAADWFALHLR
>SEQF2266_AEE68050.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLRQLDCFLAVASELHFGRAAEKLYMSQSSVSEAVKALERALGAPLFDRTSRRVALTPLGETLRQGAAPAVIMLKAALD
DCRRQASGKQRRLSIGFLGGGFYELYRPLVAEFTAAHPGVELDFTELTYVTHYAAVADGSVDVAFCRLPLGADGLCHGPI
VLRDQRMLCVPHDHPFAAAHLLDPELLARERLVRMVPGSVNQEWQDYHFPRHTPRGKPIGDGPIVRTVREGIEAVNARQG
LLMLTKRAASYYATPQIAFVEIDLPAMPSALVRRIDDHRPILQELDALLLRIAMRYGVAPG
>SEQF2266_AEE68051.1 aromatic amino acid aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFEHVQAYPGDPILSLNEDFQKDPRVGKVNLTIGIYFDEAGRIPVMAAAREAEAALLADIGPRPYLPMAGLPAYRDLVQE
LVFGAGSAARRAGRIATVQTLGGSGALKVGADFLKRYFPKSEVWVSDPSWENHRTIFEGAGFAVHTYPYYDDASGGLRFD
EMLATVGGLPAGSVVLLHACCHNPTGVDLDRAQWDALIPVLRERGLIAFVDMAYQGFGDGLDDDAYAVRALAEAGVTCVV
ANSFSKNFSLYGERCGGLSVVCETAEQAGCVLGQLTSTIRAIYSNPPTHGARIVAQVLGTPALRQSWEAELGAMRERIQA
MRRAIHDGLAGRVEPRMLQRYLSQRGMFTYTGLGAEQVETLRRDQGVYLLRSGRMCVAGLNRDNVAVAADAIASVLARG
>SEQF2266_AEE68052.1 hypothetical protein BPTD_2811 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNPGDGAAGAADRATLDHWRPRLAAIAAAAGQDDAAHDLGHLRRVWDAARAMLQAHPEADALVVLAASYLHDLVNLPKN
HPERHLASRQAAAAARERLARAGFPAARLDAVAHAIEAHSFSAGIAPRTIEARIVQDADRLDALGPVGLVRMFHVGGSLG
RALAHPSDPLAAQRALDDSRYTLDHIEAKLARLPHGMQTEAGRRLGEQRLAWLRDFRAAFSAQWGGGQLR
>SEQF2266_AEE68053.1 cation-transporting ATPase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTCASCVGRVERALKAVPGVSDAVVNLATERADVRFAGAPDVGAAVQAVEQAGYAVAASTMELAVSGMTCASCVGRVERA
LKAVPGVRAASVNLATERAHVEVAGAVAPQALVQAVAAAGYEARPLDPGGAAADAAARRQAAELQGLRRALIVAAVFALP
VFVLEMGSHMIPAFHHAVAGSIGVQNSWYIQFVLASIVLFGPGLRFFRKGVPALLRGAPDMNSLVAVGTAAAYAYSVIAT
FAAGVLPPGTVNVYYEAAAVIVALILLGRYLEARAKGNTSEAIKRLMGLQAKTARVRRDGATVEVPIAQVAAGDVVEVRP
GERVPVDGQVTEGTSFVDESMISGEPVPVEKQPGAEVVGGTVNQNGALALRATKVGGDTVLAQIIRMVEQAQGSKLPIQA
LVDRITMWFVPAVMAVALATFAIWFVFGPDPALTFALVNAVAVLIIACPCAMGLATPTSIMVGTGRAAQLGVLFRKGEAL
QALKDARVVAVDKTGTLTKGRPELTDLVLAEGFERAAVLGKVAAVEAKSEHPIARAIVDAAQVEGARLGAIEAFESITGY
GVAARVDGARVEIGADRYMARLGLDVAVFAAEAARLGDEGKTPLYAAIDGRLAAMIAVADPIKDTTAAAIRALHGLGLKV
AMITGDNRRTGEAIARQLGIDEVIAEVLPDGKVDAVKRLKAEHGALAYVGDGINDAPALAEADVGIAIGTGTDIAIEAAD
VVLMSGDLGGVPNAIALSQATMANIRQNLFWAFAYNVALIPVAAGVLYPVNGSLLSPVFAAGAMALSSVFVLSNALRLRR
FAAPFAAR
>SEQF2266_AEE68054.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68055.1 hypothetical protein BPTD_2814 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPQHDKSRLVRIDTGPMINPVAGKPSRPIAGDASFRTVTAFEGGQGKVESGVWESTSGSFQSNTTGYIEYCHIIEGEARL
VDPDGTVHAVKAGDAFIMPEGYTGRWEVDRHVKKIYFVTHLA
>SEQF2266_AEE68056.1 hypothetical protein BPTD_2815 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNLNLSLDHTGLIVFKLEDARQAFERLGFTLTPRSMHAGALTPGGPVVPWGSGNHCAMFRNGYFELLGLVEPDKPSTAR
RMLDRYEGLHIVAMDCESADAMHPQLTAAGVPAPAPATLERDAAFGPANDQTRRARFRNINLDGEAYPEARFIVIEHGTR
DVLWQPHLLDHPNGATGLAAMYFAAADLSATLERFQRLLGTPSAHGDAYCFELRRGRFWVMSEAAMREHCPVLADGPVHR
VAAACIEVRSLPALQEYLQARQIDYVAAPYLDGAAPSIWVAPAQASCAALQFIQAR
>SEQF2266_AEE68057.1 putative alcohol dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAAVIYEHGGPGSIKYETAFPDPVAKPDEVILKVGAATLNYHDVFTRNGMPGITVPMPIIMGLDFAGEVVEVGADVKDW
KVGDRVLVDPSDRKTFGGVIGEARHGGLAEYCAVPDHHLVRLPDDVSFETAVCLPVAYGTAWRMMQTIGKIQSGERVLIL
GASGGVGTCCVQLAKMAGAEVVAAASSPEKLARLTELGADHVIDYKQEDFMKAIFAKFGKPHRRLYENGVDVVVNFTGGD
TWVKSLRTLHRNGRVLTCGATAGYDPKEDLRFIWSYELQILGSNGWTRDELIALLEQVRAGKLQPIVDRTYGLADINDAF
RQLEDRQVFGKILVKP
>SEQF2266_AEE68058.1 hypothetical protein BPTD_2817 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQQAARKLEKADIEAIFARSRFISAMNLEILDIDHAGSRFSVRMPLQDTYERGVPGTKQFHGGALAALIDVVGDFAIGM
LVGGGVPTMNLRIDYLRPAVGDYVDGVAVVRKAGKSAAVVDIDILCPAGKLVAIGRGTYVPITG
>SEQF2266_AEE68059.1 putative ABC transport proteins, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNQAQHNGNAPVFRVQGLEVTYRSSRGPTTALEGFSTTVAEGEFLSILGPSGCGKSTLLKVAAGLLKPSAGVAELRGQAI
DGPRRDVGIVFQHATLLPWQNVLDNVLLPIRTMGMDIAAGTARAHALLKTMGLEKFEQHYPHELSGGMQQRVGIARGLIH
DPSLLLMDEPFAALDAMTRETMMVELQRIWSETRKSVMFITHSIPEAVFLSSKVVVLGPRPARVLREIDIDLPFPRTEET
LASPKFAQLCAELRSLFSNVAH
>SEQF2266_AEE68060.1 putative ABC transport proteins, inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKERTKSIVYPLLLLAALLVLWFIANRYLGVPYYVLPPVEGVLAALYRGYVQGDFWGDFGFTLASMAIGYVGGCTAAFII
GVLFAEYRWLERLLYPFVLALQSMPKVALAPLILVWFGFGLESKAIMVALVCFFPMFINTAVGLEATDPALLDLMRAFSA
SRWHILTRIKIPSAASHIFAALQISVVLGLIGAVVAEFVSSSKGLGYLINAATTTLDTSTMFAALISLAVLGIAGSQLIR
VLHRKLVFWDRGEAGRTLTE
>SEQF2266_AEE68061.1 hypothetical protein BPTD_2821 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHASDPFSETYAQARAKFLEAARAAGADIHSYCHDTQRGPDGEALYLDVARLGGAQASRMVVVGCGTHGIEGYSGSAAQT
DWLRRLDPSRLPRDTGVLLLHAHNPWGFAHALRFTEENVDLNRNFVDFSQPLPQNPRYAEVHALIARDHWDEQDVEAIFR
KLSDFRESVGEQVYSDAFNGGQYSHPTGIFYGGMRQQWSNRALREAIATHLAGVRQAAFIDLHTGIGPERGHVFLCFHEA
GSPAYERARRWWGERAVNRDGVTHKAVARYQGLLVDAFVAMLPEAETTAVVVEFGTLPRPRMQRASMAARWLWEHQDADG
ALRAMLMRDIREAFYPSAPDWRAGVLVQSREIFDRALAGLGQD
>SEQF2266_AEE68062.1 putative acid CoA ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLNLGQLTDPNKNPAAIALIDCLDHEAPRIYTHGDLDRLANACARGLLRKGLKTGDAVALMGINRAEFLIAYLGIMRAG
MVAVPVNYKLAPDTLSFLLQDCQARLAFVDKPRAALAPAGLDTVRFDTAQWDEFLDPGPFETYAPPLRTTAMILYTSGST
GRLKGVQLSHDGQLWTIRSRFLNRKDFDDERFIVAAPMFHMNALANCKFALAAHASIVLLPQFDTHRFIEALGRHEVTWI
TSVPTMMALVVKEKQALAQIDTARVRYIRMGSAPATDQLYEAVRRAFPNAAIAGGYGTTEAGPIVFGPTQGRALPGGGGL
GWVLPDVEVRLVDAQGRDADEGELWMRTPANMLGYLNLPDKTRQVLTEDGWYISGDVFRRDSDGCYYFIGRADDMFNCGG
ENIYPGEIEQVIERLPAVMQACVVPVADEIKGHKPVAFVVLQRGMSLSEQDVKSYVLANAPAYQHPRRVFFVESLPLAAT
SKVDRRAQAEA
>SEQF2266_AEE68063.1 hypothetical protein BPTD_2823 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFNATSVAGAAQPQRLHGLAADIDRAVAAASTAQTPAAVAGVLAAYREPDELLTPAQQAGNAEHYARHLLYAHPLGRFS
IVALAWQPGQCTPVHGHFTWCAYAVLRGAMQEEQYDWDAAGQCALATRVVARAPGDCVASLAGLDAIHRLRNVGAGTAIS
LHVYGVEGDRVATHVNRIARAA
>SEQF2266_AEE68064.1 AsnC family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDATDRKIIAILQENAETPIQSIADQVSLSTTPCWRRVQKLKESGVIRRQVALCDPVALNVGVTVFISVKTNQHSQAWLD
RFADHVTDIPEVVEFYRMSGDIDYLIRVVVPDISTYDTVYKKLIRIADLHDVSSSFAMEQLKYTTALPVDYAS
>SEQF2266_AEE68065.1 hypothetical protein BPTD_2825 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSIQSRLLATWAVCAAAGMLAGPAVASGAAYPTKPVTMIVSFPPGGSSDFFTRLVANNLSKMWGQPVVVENRPGAGGNI
GAQAGAHAPADGYTLYMSSINTHAINPGLYQNPGYDHIKDFAPISEIATVMNVLVVNPSVPAKSVSELLAYFKADPSKAF
YASPGAGTSPHLSSELFKRMTDTPITHVPYKGSNAALTDVMAGMVPMAIDNLPAALAHIKAGKLRALAVTSPKRSPDLPD
VPTMDEAGVKGYDVTTWWALFAPAGTPQPIIAKINKDVNALLALPDVKQSIAKQGAEPAPSTPEELARLVEQETARWGKV
IKDAKVTID
>SEQF2266_AEE68066.1 riboflavin synthase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFTGIVQGTATIAGIADRQGLRTFTIDFPAGFCVDLAIGASVSVDGVCLTVTRIVSADTATFDVMLQSLDITTLGGYAVG
ARVNVERAARDGAEIGGHPLSGHIDFAAAVERVRSMDNNRVLRIGIPPAFRKYVFAKGYIAVNGASLTVSEVDRGEGWFE
VWLIPETRRMTVFEEKQAGDALNIEIERSTQVVVDTVREAVQESLGKLQPVLEAILKEKGLSLEDFVRPPALK
>SEQF2266_AEE68067.1 amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNYHPSTHTPLTFHDRTQAFLDGGDSPRDYLERCLDTIARREPVVQGWVVLNEAGAREAADASARRYREGRPLSAIDGMP
VGIKDLIETRDMPTQMGSPAYTGNFPKRDSAVVRALREAGAIVLGKTVTTALGFLDPGPTTNAFDPERTPGGSSSGSGAV
VGANMVPVAVGSQLVGSMLRPASFNANWVLKPTYGGMNRGERQGFSQSHVGIHAGCAQDMWTTSIEIVRRVGGDPGHPGL
YGEAAPPAGRKPARLAVLETEGWERLDAASRAAFEAALERIAGQGVRIVRRADCSLVDGLERAIAQAGALSMRLISWEHH
WSLKNMAEQHPGTLGPSLVRQLELGQAMTLERYRHDMLEREAARQRLAALATQCDALVSLASSGPAPRIADLRGTPYPTG
DYSFSCVSSLLGAPAISVPALGVDGMPVGLQVIGQPHGDEQVTAIGRWLHALLAAPR
>SEQF2266_AEE68068.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDGLPPLNAVRTFEVAGRLCSITEAAAELCVTPSAVSRQIRLLEEHLGRKLFIRQHRGVVLTTIGHQYLGDISKALVEVR
RATSEAAKPRQRAVFTVRAPHSIAMRWLLPRLARFHAAHPHIDVKLHTSLTPPDFEREDLDAGVMLGRGQWKGLLSHMLI
RNELIPVCAPHKARALRTPADLADETLLHVFGRPDDWVAWLGAAGVEHVDVHRGMKYESSALAYEAALEGYGIAIAQKAL
IDKDLQEGRLVTPFDLSVDQSDYTYYFVLPPEGYKRRSPALDTFRRWVRDVSLPRQAAPP
>SEQF2266_AEE68069.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPRLGAAPRAWAMLALVALIGLNLRPFLTGPGTVLAGIEADTGLGHLGASMLTVLPMLLMGVGAFLAPAVQARVGTRR
GVLAALLALALGSALRLAAWDGALLVATAALCGLGVAYIQAVFPGVIKDRFPGRMAAVMGVYSAMMMGGGALGARLTSRL
AGGAGDSWRAALAWLAVPALIAFAAAWRHLAETPAARRDGALAGTLMRRPRTWLLIAAFGLVNGGYSSMVAWLAPAVQAQ
GWSIAQSGDLMVAMTIAQAAAALTLPALAARRPDRRPWLYATLAMQAMGFAGMAFWPAAAPLAWALIGGAGLGGCFALTF
IAALDHFSQAEPAGVLAALMQGGGFLIAGLAPFAVAALRAATGGWTMHLACVAIACLLIQRLDPASYAQVMAAQPGAAAT
RRAPSA
>SEQF2266_AEE68070.1 hypothetical protein BPTD_2832 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRANSNSNPGAATPDDDALLREAIALARANARAGGRPFGALVAKDGVVLARGVNRMLADHDPTAHTELLALREAGRALRS
ARLDGCVVYASGQPCPMCLAAMRMSGVARAVYAYSNEQAEPYGLSTAALAVELALPPQRQPGFAFEHRPGAAAPDADLYR
EWQDGPQAP
>SEQF2266_AEE68071.1 hypothetical protein BPTD_2833 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGMPIIRFYRCWLAACLVSLGGASVAAGDAGQALLQAAADGDAARVKTLLAGGAPLEARDAQGNTPLLRATQGNHAEAAG
ALIEAGADVNAQNGIQDSAYLLAGARGYRAILALTLAHGADLKSTNRYGGTALIPACERGHVEVVDMLLRAGVDPDHVNR
LGWTGLLEAIILGDGGTRHQAIVARLIEGGADVNLADGDGVSPLRHARQRGQAAIVQLLEAAHAR
>SEQF2266_AEE68072.1 lysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDPVLLRSFVTVVDTGNFTRASEHLHLTQSTVSQHVIRLEENLGCRLLDRGQRHVLPTEEGERLLGYARSILRLADEAR
ESVAAAQGNAVLRLGAPEDFMGAALMPVLAPLLARYPLLRLEFDSGLSHQLLRRYRDGELDLLLVKQWEVDADCQAHWPE
PLCWVAARDGPTLPAGEAVPLAVFPAGALYRQEMTRTLEASGRPWHIRYASTSLAGLVAAVGAGLGVSLMPAASAGGELR
VLRKRDGFPAVDGLQLGLYARARLGAAGRDLRDALAAHCGRRAAAMNQA
>SEQF2266_AEE68073.1 oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSALFSALQIGALELPNRIVVSPMCQYSAREGQANEWHMQHLMQLALSGAGLVMVEATAVEPRGRISHGCLGLYSDATEA
ALARVLAAARAVAAPQARLGIQLAHAGRKGAADAPWLGGRPLAPQAGAWRCVAPSATPFAEGWPTPQALDEEGIAGVIEA
FGAAARRAARLGFDVVELHAGHGYLLHQFQSPLANARTDAWGGTAAGRQRLALAVARRMREALPAGCVLGARITGTDWLP
GGLDIEDAVSLAGQLRQAGVDYVCVTSGFVVRGARIPFGPGYQAGLAEQVRRRTGMPVRAVGGIADPRQAQAIIETGQAD
QVALARAFLADPRWVWRAAETLGAPAYYAPQYRLGAGLRA
>SEQF2266_AEE68074.1 high-affinity branched-chain amino acid transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHNVDAGYGGKTVLKSVSLTVPQGAIVTLLGANGAGKSTTLKAIVGLVQPTAGAIELDGAPMPNRRADQALAAGVALVAE
QRELFPSMSVADNLLLGGYLQRDRAQARRDYESLLDQFPRLRERAAQPARTLSGGEQQMLAIARALMARPRLLLLDEPSL
GLAPQLVDDMFRIIRQINANGATILLVEQNVALALDAASYGYVMETGAITLAGPAAELAHSEAIRASYL
>SEQF2266_AEE68075.1 high-affinity branched-chain amino acid transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHPILEVARVTMRFGGIVALNDVSLQVRQGDIHAVIGPNGAGKSTLLNVITGIYRPTSGAVRLQGGQLDRLPPHRICRL
GVCRTFQNTELFGEMSALENVQVGFHLAPPYGMAGALLXGPRYARGERALRAQAMELLELVGLAQDGDTPAAALPFGKQR
RLEVARALATGPSLLLLDEPAAGLRAAEIEGLNDILLRVRRERGLSILVIDHVMALVMKISDRITVLNFGQKIAEGRPEE
VRRSPAVIKAYLGERGRDAVLA
>SEQF2266_AEE68076.1 branched chain amino acid ABC transporter permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAKKLLAYAAAALLFGLAYRYLPEYQLYQVSLIAATAIIVLGLVVVCGIAGQISLGQAAFVALGGYGAAILATRLGVPL
YAGIPLAAAACALLGYLLGLATLRVSGHYLALATMAVTAIVQLAVINLDDLTGGAAGMPMPPLEIAGHVLDNGASLYLVI
VPVFALSYALVRNLMRSRIGRAFGAVRQGEIAAAAMGVNVLHYKASAFAASGFLGALGGGLLGALSSYLDPSQYGITQTV
YYLAIAVVGGMASPLGALIGSAIFVFIPEVLQGLQSYLGLVFALLLLAFIMLRPAGLASFIVRPRPAPAALSTAPGEASK
>SEQF2266_AEE68077.1 branched chain amino acid ABC transporter permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLMQILIGSLTAGAVYALVALGFVLIYKGTGVVHFGYGEQLTFGAYMALIGQSLLGLPFGLALLFALAASALLGWLIFGL
FAGPLRHATLWTRIIATLAIGIALREGLRAYMGPTAWPFPFLLSQQAFEVGGIYLVPAILAIAGIAVLILAALFLERTLR
GKAILSACENRTGASLVGIRVSRVYLTIWILASLLAAVAGILIASQLTLSPDMGIIAIKGFTAAVIGGFASLPGAVLGGL
LLGVLEGLAGAYVSSAMKDVISYAVLILVMLLMPHGLFGKLIVKKV
>SEQF2266_AEE68078.1 hypothetical protein BPTD_2840 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRIEAIVPYPWHPGYTYSPAVRIGNTVYLSGTTATDEQGNLVGPGDIEAQTRQIYRKFDLIMRSVGGSLRDIVETTDYV
LSLDEYRKTARVRREVFGDPWPAATGVVVAGLIRPDALIEIKAIGVLPSC
>SEQF2266_AEE68079.1 acetyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTATQDGQSAQLYGVDLRPGLASHGSPATITRTENLGFAALIYTSGSTGRPKGGAIAVNFLAAVWPYLTYGADMRADDV
VWPTGDPGWGYGFVCYLGALAMGATIVSLAANPTPEVCLDVLARQRVSNFATTPTLLRGVMALGMDAVRARPNAVRAISS
CGEPLNGEVVEFFQQAWGRTPMDHFGATEYGLPVGNFNAVAVPAKAGSMGLPFPGYEIAVLDDAGQPLAGAHASGWLAKR
RSADRLYWSHYWDDAGATAELERGEWIVTGDLAHRDAEGYYWFDGRAGDMIKSAGYRIGPFEVESALLAHGAVAEAAVVG
VPDALRGELVKAYIVLLPGHAASPRLAEEIQLFVKTHCGAHLYPRIVEFVPDLPKTDTGKIQRFALRQRA
>SEQF2266_AEE68080.1 putative branched-chain amino acid-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRLALVALPLALAAGMAPTAAEPGVTADSLKIGILGSLTGPFAIFGSGNLAGATLAFEQANAAGGIHGRKLEWLSLDDE
SSPPKGIAAYKRLVGPEQVFAVFGPSASAVGQAMVQTFKTSTTPTFISVFSTPIVTDPPLPNVFRTGPMNDREQGVAIAN
YALDHLKAKRVALIRQSDEYGKSGGESVLQRLKARGAEPVALEVFNVYDTDFNAQLTKIAAARPDVLVVYGYPNPSAIIT
RQARQLGVQGVVLGSNSAGSRKYPEIVGKAAAGTQNIMTLEILPESSSTPQAQAFREAFVARFPDLARQGRPDLGGALGY
GGALAFLEGIKRAGAQPTQQGLVKALESLQGFRCPPPSVPAYARATAPSASWRSATICRAASCPSWSASMA
>SEQF2266_AEE68081.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATEKLPPLERYIRMLELLTAFPDGLALSELSAMIELPKASAHRLIKTLQELELAATSSPGSATYVTGPRLRKLAFMSAD
AQWVVAILRPFLRELTQEMGETAFVARLEGASVRTIAFEAPETPWRGFILPGYEMHPNAAASAKAILAFQDAATLKRALR
EPFEKLTPQTNLSKERLLEEYAAIRQSGVATCIGEIDEGLAAVAVPIEVGGAAGLYSLGLTGPMNRVMALGVERAAERMM
AYAARMASGLSAGLSAESTRAAGLS
>SEQF2266_AEE68082.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLQLAGKRVLITGASKGIGLACALSFAREGATPVLVARDAQALARAADAVREQTGQAAETHAQDLALPGAAQALAARAG
AIDILVNNAGAVPGGALDQVEDERWRAGWELKVHGYINLARVYYPRMRAAGAGVIANVIGMAASSPRHDYVCGAAANAAL
VAFTRALGGEGPRHGVRVFGVNPSRTRTDRVLGLAQQRAQARWNDPDRWQETLSGLPFDRLMEPAEVADVVVFGCSPRAG
YLSATVIDLDGGEQYRGAA
>SEQF2266_AEE68083.1 hypothetical protein BPTD_2845 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANPRIAHAFPDDRAPCAPPAGGRIMVHLVVNVENWRFDQPMPRTLITPPHGRETVPDVPNFSWVDYGMRAGLARMLQAI
GERGLPASTSCNASVIDAYPRAAEAMLRAGWEFIGHGMHQQSLNHGGGEAELIAQCLDKLRAFTGARPRGWLSPGLRETV
DTPDILAAAGVEYVCDWVVDDLPNWMRIERGALIQMPYNLELNDSVIYAVEKHSSPEFLLRLERTLALFERECRRWPRVL
ALGLHPHLMGVPHRYGYFEQMLDLLAGHPDVVFMNGGQIADWFKSQYPAP
>SEQF2266_AEE68084.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHISVTQLSKTYPGVTPVHALDQIDLQVAEGEFVALLGPSGCGKSTLLNLIAGFEAPSGGELRVGGGAVARPGPERGVV
FQEAALFPWLNVWENVVFGPKIAGLSRREYAARAEEMLEITGLSAFKRHLPVQLSGGMRQRVGIARVLTLGSRVLLMDEP
FGALDAQTRLTMQELLLSVWQTLRTTVVFVTHDIDEAILLADTIYVMSARPGRIATRIEVPIERPRSLDLITGEVFNGLK
REILKQMRH
>SEQF2266_AEE68085.1 putative inner membrane component of binding-protein-dependent transport system [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSSILKRPAAPAPAAPAGAPAGRALRRLGLGLAVPVLILVVWQLVGQSAAMAGVVPTPVQVARAWYAWIFGDPGMGLNP
YQGTWVSNVQYSTMRVAQGFALAMATGIPLGLAIGWSRLTSQLLDPLIQGLRPIPITAWLPFSIALFGIRDMGSIFLIFL
GGFYAIVVNTTQGARDVDRNLVRAASMMGASSGQLMRRVVLPAAMPSIFTGLRIGLGISWTAVIVSEMVAVKSGLGYVLW
DAYYVGRMDIVLANMVSIGMMGFLSDRLIVAIEHRVLAWRMLQNH
>SEQF2266_AEE68086.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTDTHPPGRLAIDDADGLLRVRIVNPARYNAMSLSMWEALGQAVRDAQGRDDLRAIVLEGEGERAFVSGADISEFASQR
KDPAQIARYDRAVTQAQQALSESAVPTIALVRGICMGGGMGLALACDLRYCNESARFRMPAARLGLGYALDGVKRMCDML
GAARAADLFLTARTFGGAEAGRIGLAHEVFADADFTQAAAERVAAVAGNAPLTLRAARLALRHLLGGAHAPSADSVDQAV
RTCFDSEDYQEGQAAFREKRPPVFKGR
>SEQF2266_AEE68087.1 hypothetical protein BPTD_2850 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPQLSASPALQRFRVLDLSRVRAGPTCVRMLADFGADVIRIEPPPGVDPNEAMFAADRWSGDFQNLNRNKRSLTLNLKKP
EGMAVLRRLVAGADVVVENWRPDVKARLGVDYESLRAINPRIILASISGFGQSGPYAGRPGFDQIAQGMGGLMSVTGLPG
QGPVRAGLAVADSSTGLYAAIGILTALLEREQSGQGQWVHASLLHAQIAMMDFQAARYLNDGDVPAQEGNDHPTSSPMGL
FAASDGMFNLGASGEGNWKRFCQVLGQTGWLADPRFQTEKLRVRNRRDLNALIGEVFAGGTVAHWVGLLNEAGVPAGPVY
TVPQMFDDAQVRHLDVARRCQAWQGGERVMITQPVTLARTPADIARTAPGWGEHTDEVLREAGYGEDEIDKLRAAGAV
>SEQF2266_AEE68088.1 putative amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPAGLPDSIAGLRAQLAAGALDVAQALALQRQACEADGWHCVVALPDDAGEPPPASLPLAGVGLAHKDIFVLPGRVPEC
GARHPWPDAPVRAATVIRRLAAAGSRPLAALAMAEHASGATGENPRYPLPRNPLDADAAVGGSSSGSAVAVAAGLCYGSL
GTDTAGSVRIPAATCGVVGLMPTRGLLPGDGVAPLAGELDTVGLLARCADDAQAVLHAALDAAQAAALDAAATPAMERWR
IATCWIHPDPAVRLDPAVHAALEDYATECSARGRRREARLAALPQWIRLAQTLLYAGSAAAHAQALRGQAPALGALARNL
ALAGAAMPPAWAHAALAQRRAQVDAFVAEALADSDVLLTPALPGPVPDWSQVLTSSPGFEARRLLDLFCWLSFVNYLGLP
AIVFPIGRDAAGRPISVQAIARPGGEAMLLALARQAGHSRFGGRGFAQQPGLPLARSRERV
>SEQF2266_AEE68089.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKVSDRIRLALEADIRNGVLLPGDAIDEQALAARHQVSRTPVREALLQLKVQGIVDSQPRGGAVVARMDVQELLAIWELM
AEMEGVCTRMACQRMTAEERSELARVHREAAPVVQADDAQAWRKANHRFHEVLYRGCRNPYLREQLLALRARTGAYLRHA
FIAVGRVRASYEQHGELVQAILDHDPERAHRMMMRHISLAQGAKGLADFLINLPRSMVKP
>SEQF2266_AEE68090.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68091.1 hypothetical protein BPTD_2854 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQSSLFNSRAFVGLLIVVTIAFAWLLWPFYGAVFWGAILAIIFAPVHRRIAVRLAPRRNLAALLTLLMVLLVVIIPLIF
ITGSLVQEGANLYQRLKSGNLNFGAYLQQAIDALPPTVHDVLARFDLADLGSIQEKLTAGMMQASQFIATQAFNIGQDTF
QFLIGFGVMLYLLFFLLRDGSQLSRRLRRAVPLDEHHKQHLFRKFTTVIRATVKGNIAVAAAQGALGGVMFSVLGIQGAL
LWGVIMAFLSLLPAIGAGLIWAPVAVYFLLTGAIWQGVVLILFGVLVIGMVDNVLRPLLVGKDTKLPDYVVLISTLGGMA
LFGLNGFVIGPLIAALFVACWDLFSPPDDTAGDGAARP
>SEQF2266_AEE68092.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAMRSGAAWVLEGRFMRFGWGLPALAVVLALAGCVNREPEERAAFIAYLEQVAAPQAGVVAAPPDPPTRKALGDYEAQY
EPMEAAHAAVREALAAQQAALQALRLHSVDEIVARQDGWDRLAERLAAARTGLEQARAAADAARAGMEQPPDLRNAYARA
YEHSVTAPAQALARISGLLEPAVEDARRVAGFVARHRDQVDTDGPLTQVRDPSVRSELNVLLQALNGRSDQVSQAQALLN
GLAGPARQAP
>SEQF2266_AEE68093.1 hypothetical protein BPTD_2856 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPCAHSITRTRKRKNMNQLFDTNHLIRRPTQTKLDDTPIHVGDVVHLQLADGPVIRARVIYNAPINGTTTYTTELIRCA
GDDKASHGQRIRFRHEHVHRIESVRGLTH
>SEQF2266_AEE68094.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPTATSVRIWDLPTRLFHWAFAAAVIGALVTVKLGGLYMDWHVRFGLTALGLVLFRLIWGFVGPRHARFATFVRGPGAM
LAYLRGRAADHAGHNPLGALSVLAMLAVIGVQAATGLFASDDIMIQGPLYGHVSEATANTLTGLHQANEWIIFGLLGAHL
LAIAWYSAVRRRALVRAMITGNAPAAQLPPATPASQDGPAIWLRAAVVGACCAALVLWIQAQAVAVDMSFS
>SEQF2266_AEE68095.1 putative ccytochrome [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKLSIVAAVVCTMLAPLWSSPAAAQFAKPQDAIKYRQSALTLMASHFGRMQPVMRGQAPYDAAQIKANVDIFKTLSTLP
WAAFGPGTEGGDALPAVWSDAEDFKQKQQRLADNVAKLSAAADAGDYDKVRAAFGDVGASCKACHDSFRKKK
>SEQF2266_AEE68096.1 adenylosuccinate lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQIADQLTQLNALSPLDGRYASRAGALRGLLSEAGFMAHRVEVEVAWLVALSDAGLPELPAFPAAARERLAALVRNFSEA
DAARIKDIERVTNHDVKAVEYWLKEQVADDAELARAAEFIHFACTSEDINNTSHALMLTRARAEVVVPQLNQVLAKLNEL
ARTHADQPMLSRTHGQPASPTTLGKEFANVAARLQRAVAAIEAVEPLAKLNGATGNYNAHLSAYPEIDWPAFSRNVLAGL
GLIQNRHTIQIEPHDWMAALFDAVARANVIVLDLDRDIWGYVALGYFKQRLKEGEVGSSTMPHKVNPIDFENSEGNLGLA
NAVLRHLSEKLPVSRWQRDLTDSTVLRNLGVGLGYALVAWDACLRGLNKLEVNAAAIDADIDACWEVLAEPVQTVMRRYG
LPQPYEQLKTLTRGKGITEEALREFIGGLALPDEPKARLLAMTPRSYIGLAAQLARAV
>SEQF2266_AEE68097.1 hypothetical protein BPTD_2860 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLIGSLTSPYVRKVRVVMAEKKLDYQLELENVWSPDSQVQKYNPLGKVPCLVMEDGGALFDSRVIVEYLDTLSPVARLI
PQPGRERAAVKCWEAIADGLLDACVTVVRERLRPAAQQSPEWIERQYGKVRASLDAMDHSLGENAHCMGVNYSLADIAVG
CALGYLNLRFADLDWRADHANLARLYEKLSARPSFVDSMPPTA
>SEQF2266_AEE68098.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDVVMLICLLALGAVVGFAAGLLGIGGGMLLVPFLTMLFAWQGMPGDLVVHAAIATSMTSILFTSVSSVRAHQKRGTIQW
SIVWAMAPGIIIGGLLSGGAVFAALSTAWLSLFFALFVGYSGWNMLRSKKPKASRQMPGIVGTSAAGAGIGFLSGLVGAG
GGFLSVPFMVWCNVALHTAVSTSAALGFPIALANSVGYVISGLNESVTRPGMLGYIYWPALLALVATSVLTAPLGARMAH
RLPVGTLKRVFATLLFALAAYMLTKAWQAFMV
>SEQF2266_AEE68099.1 tRNA-specific 2-thiouridylase MnmA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSNPTRKGRVVVGMSGGVDSSVTAWLLKQQGYEVVGLFMKNWEDDDDSEYCSTRQDLLDAASVADLVGVEFEYVNFAAE
YKDRVFAEFLREYSAGRTPNPDVLCNAEIKFKAFLDHAMALGAEHIATGHYARVRTVETPAGPRHQLLKALDDTKDQSYF
LHRLNQVQLARTLFPLGELRKTEVRRIAHEIGLHNAAKKDSTGICFIGERPFREFLNRYLPSEPGPILTPEGQRVGTHHG
LSFYTLGQRKGLGVGGVKGRQRDDGTAEAWYAARKDLARNVLYVVQGHDHPWLLSAQLQAQDASWIAGEPPAAGAYGAKT
RYRQADAACRLDQAGGERFALAFEQAQWAVTPGQSAVLYDGEVCLGGGIII
>SEQF2266_AEE68100.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRFCPSLTDLQAFEVAARHNSFTRAAQELCVTQGAVSKQVKHLEEFVGVELFLWIRQGLVLTEAGRSYLKKIRAGLGQI
EAATLELIAHQGRGGTLHLTAMPTFGARWLIPRLAAFRRLRPDIHVEFLPHRQGYDFSTPELDAAVRFGEGIWPGSGADY
IVGRDVVPVCSERLVPGGCQDAADLLAYPLLHHTSAMEGWREWFEQAGCDTRRSLEGARFDQYSLLSQAAAAGFGVALIP
RCLIEDELRDGKLHVPIQLPIRARQGYYLCYPEQKASSPTLQAFRGWLMEASSEAEPRPDQLAAAV
>SEQF2266_AEE68101.1 hypothetical protein BPTD_2864 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRRNVILGLSLAAILAAPLAAGVAHAQDAYPNKPIRLIVPFPPGGTTDIVGRLFADKLSKELGQTVVVENRGGAGGSIG
SAFVASSVPDGYVLGIATVSTHGINPAIYTNLPFDAEKDFTPISNLAAVPNIMVVNPKVPAKNIEDFIKLAKSQPGKLTY
ASAGNGSVSHMMGEMFKMASGTDLMHVPYRGVGPALNDTLAGQVDVLYDNLPSSLPHVQSGALVPLAVAAPQRVAALPNV
PTFAEAGLQPVNDSSWFGLVAPAKVPQPVIDKLYATVVKVSAEDDVKKRLEGLGAAPVANTPAEYAKQISEEIAKNKRIA
KEANVKID
>SEQF2266_AEE68102.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFITQPLSYRLDLPTEYPHAQSSTPLVLDSPHSGAAYPPDFAPSVSAGALRTAEDTWVDDLWGDAVGLGVPLIAASFPRS
YIDANRAVDEIDPLLLAQPWPEAINESPKVKLGKGLVWRMLDDGTPLYDRKLSVDEVRHRIEACWKPYHRALGAVLDQAH
ARFGKVWHINCHSMPSVAGAFATDQPGLVHPDFVLGDRDGSTSDPAFREFVAAWLRERGYDVSVNDPYKGVELVRAFGRP
ADGRHSLQIEINRKLYMDEVSLRPNDNYPRLKAHLRELTAALVDWTRAQAA
>SEQF2266_AEE68103.1 NAD(P) transhydrogenase, subunit alpha part 1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQIGVPKETRDGETRVAATPETVKKYIGGKHSVIVERGAGVAAHYPDSAYEEAGATLGTAETALGCELVLKVRAPADNEL
PHMKRGAVLAGMLDPFDADDLQRLAAAGLTAFALEAAPRITRAQSLDVLSSQANLAGYKAVLLAANYYGRLLPMMMTAAG
TLKAARVVVLGAGVAGLQAIATARRLGAVVEASDVRPAAKEQIESLGAKFIDVPFETDEEREIAQGVGGYARPMPPAWMA
RQAELVAQRCKQADIVITTALIPGRPAPTLLTAETVQAMKPGSVVVDLAVERGGNCPLTQKGLVADHHGVTLVGLTNLPG
MLPTDASALYARNLLDFLKLIVDAEGALAIRRDDEIVTACLMCEGGQVTRRS
>SEQF2266_AEE68104.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHYRHSFMTQTPPRAPRGGAGAALVAGQTLIDLSRHSAARYYLSVPGKERPVFQGVFDTSEVAPGVVAHRVDIRDLQGAA
VRAELKPGLRLALTIGGRADVSIGHCRLPRGPQGGDGVQGALVAVAAPATFARQSRRGDIERTVSLAFSHDWLARRLGAD
GAALAAFAQRHLAMHCWPASAQAITLAEQMLRPPALAPALWRLYLESRALDLLVEGFDGLEAGAGAAPQAGRGGLARRDF
LRMARIRELLESGEADAWSLEELARHACLSVNTLQRHFRAAWGMTVFECLRGARLTRARLGLERDGLSVAQAACLAGYTS
AANFATAFRRAFGVTPGQLRARR
>SEQF2266_AEE68105.1 outer membrane receptor FepA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTPRFALHYASASVLLAASGLAMAQTATQIHDPSQVQQMATVQVLGTAEEEIKESLGVSVITAEEIARRPPTNDLSDLI
RREPGVNLTGNSASGARGNSRQVDIRGMGPENTLILIDGKPVTSRNAVRYGWNGDRDTRGDTNWVPAEEVERIEVIRGPA
AARYGSGAMGGVVNIITKRPADRATGSITYYTNQPEDSREGNTNRVNARISAPISDTLSMRLYGNYNKTNPDARDINAGH
ANTSDNGNPSTAGREGVINQDLSALFSWKADSHNTVDLDMGFSRQGNLFAGDTMNNANSDFSDSLYGKETNAMYRENYAL
THRGVYDWGTSRASVGYDYTRNARQREGLAGGPEGAPTAGGYDTARLKNWRAAAEASVPFHLGFEQVATVGVEWLRESLE
DPAGTRQTYTGGAIGGTAPADRDPKSRQTSYALFAEDNIEIDERTMLTPGVRLDHNSEFGSNWSPSLNASYAVTDALKLK
GGIARAYKAPNLYQSNPNYLLYSRGNGCLASQTNTNGCYLVGNEDLSPETSVNKEIGFEYDPGTWRTSMAYFRNDYRNKI
VAGTDVQYRLANGARVLQWTNSGKAVVEGLEGNLFIPLASNLDWNTNFTYMIQSKEKATGEPLSVIPEYTINSTLDWFYT
PQLSFQANLTYYGKQEGPSTNVRTGVELNGDGRQTISPYALAGLSMGYEVNRNLKFRVGVSNLFDKQLYREGNASSAGAA
TYNEPGRAYYATATVSF
>SEQF2266_AEE68106.1 hypothetical protein BPTD_2871 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATALLPRRAAPWLLAAALRPAASRAQPAAVPSEPPERARARLGVLGLVQQTVLARGGGLRNVRLTVAVPAGQPPAAGWP
VIYMLDDGAALQALAQANRADLARQAVLVGIGYDSPGRIDGQARAWDYTPALPGTGVHGTPDPRSPQRRNGGAEAWLEFI
ETRVKPWVAGTTRVDTGRQTLYGHSYGGLFVLHTLLARPQTFQRYVAASPSLWWHAPYMMRRASDAGDFSHGAPTLHLMA
GGAEMLRRPGAAPLATAGATTRLAAILAAKPGLSVTLREFPGLSHGAMLPASAQAAAELAAQP
>SEQF2266_AEE68107.1 glycolate oxidase iron-sulfur subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTNLASWARDTDFGEEADAILRRCVHCGFCTATCPTYQVLGDELDSPRGRIYLIKQLLEGSEPTQATQQHLDRCLTCRN
CETTCPSGVEYGRLVDIGRQLVHERVPRRLGDRLRREALRRGMNSAWFGPAMRLGQMVRAMLPQALRRKVPAARPPGLLP
DPSRHERQVLMLTGCVQPSMMPTIDAATLRVLDAIGIGARLAPGAGCCGAVNFHLDAQGEALAQMRANVDAWWPWVERGE
IEAIVMNASGCGAMVKEYAHHLRRDPDYAERAARIVALVKDVAEVVAPHAAALRERLAPGPRAAFHPPCTLQHWQGLRPL
AERLLVELGFELAPFGESHLCCGSAGAYSVLNPDIALTLRDRKLGEIAAAAPTVIMSSNIGCIGHLQSGTDTPVRHWIEV
VDQRLATQG
>SEQF2266_AEE68108.1 glycolate oxidase FAD binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDFVLSELCDQVMTARAGHKPLFIVGGGTKGFYGNHRAVTPQDGHCLLDMTPYRGIVSYQPSELVVTARAGTPLAELEAA
LAEHGQMLAFEPPHFGPGATLGGCVAAGLSGPRRMAAGAVRDFVLGARLLDSQGHILAFGGEVMKNVAGYDVSRLQAGAQ
GIFGALLEVSLKVVPRPAVVESLRLPATQDEALRWFGQWRGRPLPISASCWTADGAADGGGAVVLRLAGAPPAVQAAREV
LGGELLDAAQAHDWWESLREQSHAFFDRGMPLWRLAVPPTAPALALGPTLIEWGGGQRWLSGHYDAQAVRAAAAQAGGHA
TLFRAAGRAAPADGVFHPLSDGVAAITRRLKQELDPAGLFNPGRLVPEL
>SEQF2266_AEE68109.1 glycolate oxidase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTLVDAGFSPRREGFAPQPLIEALLSILPAHCVLHREEDTRPYECDGLSLYRALPAVVALPEDEAQVRAIMQLCKRMNV
PIVARGAGTGLSGGAMPHAQGVLLGLSKLNRIKRIDPAGGTAVVEPGVRNLAISEAAAPYGLYYAPDPSSQIACSIGGNV
AENSGGVHCLKYGLTVHNVLRVRVVTIDGEIVELGSEAPDAPGLDLLSVFVGSEGMLGVVTEITVKLIPSPACAQVVMAS
FASVEAAGNAVTQIIAAGLIPAGLEMMDRQAVHMVEPFVQAGYDLQAQAILLCEADGTPQEVAHEVAMMEAVFKRAGATS
LQVSGSEAERLRFWAGRKNAFPAAGRVSPDYYCMDGTIPRRHLARVLGAIEQMEDDFGLRCANVFHAGDGNLHPLILFDS
NKPDEVERAEKFGAAILELCVQVGGTVTGEHGVGMEKINQMCVQFSRDELDAFLAVKRAFDPPGLLNPEKVIPTLARCAE
YGKMHVHAGEMRFPDLARF
>SEQF2266_AEE68110.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPQPAEALRRPVPPACLDALKARFGDRLSMAHAVREHHGRDESPYPPMLPDAVVFAHSTEDVAEVARLCNEHCVPLIP
YGAGSSLEGHLLAIQGGISLDLSQMNQVLAVNAEDLTVTVQAGVTRKQLNEEIRDTGLFFPIDPGADASLGGMAATRASG
TNAVRYGTMRENVMALTVVTADGRVLRTAGRARKSSAGYDLTRIFVGSEGTLGIITEVTVRLYPQPEAVSAAICNFPNLD
AAVQSVIEIIQMGVPVARVEFMDEASVRAVNMHSKLTLRETPLLLFEFHGSPAGVQEQAETVQAITAEHGGMDFEWAERP
EDRSRLWTARHNAYFAGLQLRPGCRASTTDVCVPISRLADCVRETVDELERASFPYTIVGHVGDGNFHVLMLLDADSPQE
WQESETINHNLVRRAIAADGTCTGEHGVGLHKMQFMAEEHGEEALALMRSLKHAFDPNNILNPGKIIAW
>SEQF2266_AEE68111.1 adhesin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKHCFKLVHSPALGMLVPVHEHRTGRPLRGARRAMAVTLAVLAPAGAAAAGGIAPQGATQVAPARNGVPVIQIAAPDAT
GISHNRYTEFNVRQPGVVLNNSTAEGVSALAGRISGNPGLRGPARAILNEVTGVSPTTLEGALEVFGPAADVLVANPNGL
TANGLSTINIRGLTLSTGRPGAGGVLDVARGRLEIGPHGVNTAGLSYFDLVARTVALHGPVGAGDGQPPADINVVAGANR
YDYGRRTRLQPTGRPAAAPDASAGHAIDGSAAGAMYGRHITLVSSDAGLGARHRGLVSAAGHIAIDAAGGVSVQALAAHA
ASDGTAGSATIRAGGDALIGSVIAFGGDIEVRAAAGRIATHGALNAPRGRVRLQAGDALAVHGPVQAARVALATRGDASI
AADLHATRDGVSLAARNATLAHARVIATPPAAQARPSTPAIDIALSGTLTLRGTLHDADGDGRRIEGTSVALANGMPVIV
DTRQPQRAVPNALLASDAGLYAASQPISIRAAGLRNEGGAIDSTGTGQGHIGLRIGGPAVNLGYIATHGTLEATVDGTLE
NRMLLSAAALRVATHDLSNHAAMTASGPDTGTPALDLSVQHRVENAGSLLAARGALRLRGGAELSIVNQPAGFMLAHGQD
IAAARLANAGTLSSTAAGTLTLAGDLENSGVLQSAHALRVQARRIASRGRLATATDGAGLTLAADENLTLAGRTSSAGAL
LARAGAALVNEGIVTARQDLSWRARDIVNDAAGNVVARSVDMRAGQGFDHRGAIGSVTDLVLKAARIDSAGVLRANQDID
MHADDAMRLKAGARTLAGRDLALAADQLEQSGMAQAGRTLTATAGALENDGLLDAADAKLRTTRAFVNRGQIQADMLQAQ
GPQIRNAGVLRTGALLALQAAGRLENTGGMAASGSLSIAAAGPFANSGTMGANGDASFALSSFANTGSISVGGDLALRLP
DVELTLDADHRLPVSQGTTLLQVASLDNRARSETPGRLSVQARGAIRNQDTLAAGQGLWLESAANDIENGAGALLWSGAD
LRLRGTRIINREAAIIESAAGMVLDARAEIDNGLGIIRAGGDLWADAPLLRNSGRLGGRIVPAGDAAIGGGTYDHYHSAA
VVWHELFTAGAAGIRVPRYDGKDVRVAQSVVQAGGNLHLNQGEQKGRQARVSNQGRIEAAGMALVDGNVDNASLHLSLSV
DEYLRRPLAAPIVLRATDSRAQHVIPAFWKFHTLYEFLDFLLSNNEPRYIWGYYRTWPEWAFQTLRNLDLGYAGAPDPTA
PPVPRPPVLDPQAKASTTPAAQALVAQYHKDLAEYATALEAAQRAEAIRTARQRVDGALRARYGEKLAQLKTRTPEVDAA
VAALAQTIFDARAKPAAEVEKLIAAALCSPRAQACAAGTARIAQLLDQASLPPRRPAVALFAQAMAAVLGPDWHGPVGHA
TLMARYADFKRRVATQGRAAGGELAFYPAQQTVLAGGAGLVLSGGRVTNGENVAGLLARNMTVHIGEQRIETPRGSIDAI
RHPDAGPAVTVKDSIHALLENRRLFARTAPARAAAGPGGPDVPATPPGLPQPLYETRLSYLDQSHYYGSQYFFDLIRYRP
DRPLRTIGDNYFETRLIREQIARAMGGHEYRNAVRGLALVQSLMDAAPLAAAELGLRVGQAPTAEQLARATRDFVWYVRE
TVDGQEVLVPRVYLTRATRTAASATREAGGALMASAGTVLADTGGAAIESGNAAFLGKDVILDAAGGAVRLINDKGIAGG
ARALGTLAIRGGDIAIQGGLLDAAQAYLTGERVSLAASARYDAHGRLVSRHDARLNGRADAAGLLYIAAKRLDSAGATLS
GDHVRLEADKVRLGGLYDVDSSYSQTSRYGLGKAWWLLSSQTETATASHARFQGTTLEGAILSGRATDMDIEGSSARFQQ
TDLQVAHDFKARAAADYAYAERAKRVDQLFLRLSAGAGGYEAGIDLSAQGGLQAHAGRGQTAGAHASAGFESTREYERSR
MTHYRNADLNFGAGLLAVGNTADLGGADINRDRYGQGASTASDAIPGDLLRIRAARVAATKYLDVTDSLTASSYLRASID
GALTSSVATAATRLGDTLAEARQENSQVHAGQMALQMAGEATQLATTDTAALSISATFAAGYADSHRNTQTENTNYFGGN
LDIRATEQDIDLAGTKFSGADWLALSARRDINVRAAASRYQESGEQHDLQLHQTINAGANAMQAAAGVGVTAGLSGSHMV
RHGAGQTYEGSALRATQLHLQARDLNLDASMAQATRMDLHVARDLNAISRQDEQRFAQTGGNWEVSLGAAIQNRTLVAPV
GTIGAGVRHEHDYQALTQNGQAGLLASQGLRATVGRDARLRGAIIADASNQGGMDIAGRIHAEALHDYRDKDGFETGASV
GISSTTLNPTLSLTLGRPAVEQYRAVRQATIAMGAAPGAPRYTARGGVSGRLNTDSGQAVVVQRAERWASARTEFSFDQP
SRRDKADSGSPGARPAHPGAAKAPALPLARPLTSVLAGPSSTSPTANPAAAPGIAAQPAPASPGRDAPKPDPYANRVIVQ
LAQDDVATQAAQALFHKHAEQSDWYRQADDGSLHPVHPLRAAAAGPTKIQLVGHGSADRQALSGHDGHAVAGIVQQLRER
LPPAAALAKVALVGCDTDCASGASLRGDVAQRLAADGAQPAPAVSGYIGRLEVDAAGRKHAVAQGGLGDVDPEARAQGTQ
PVPRVFSHGPVNIAQSGQARQLVIDGHGSWVRPDRAVAPSYSGTVRLPAGTRMHFYSDDGQMVSAIPLRNIPDNPERAWR
AQPFSERISSERIRRVANAAKVPFDVARQGFETSTQVREIAAPGTAVKNYLLTPIDPQRDAALAFHQSRSQADVDLASAA
PGKGALLSDLLLAVAASGHSYPLIHYTCCRGEFQRPGSDTPSPQLPPHELLIRSWLASSAPVHALPLPPSSRGTLPGADP
YALRSIVQLGTDAATARAAAALHGKHPANSNWYLQTRDGGLEPVRQAAGPAAGPHKVQFVGHGDVYHGVPLLGGNAAATL
ADLLNQVEQHSPAGARLDKIALVGCDTDCTGRPSLREPFRQSLAARPDAPALTVTGYIGRIDVDSAGRKRRVATGGLGDR
PPADEPASPRPPAQPAAPGPGAATPSSAPSAPVAARLFTHGPITLSQSENARQLLIQGHSGWTRPPAGTSGAGEIPAGWL
RLPSGTRMHFYSVDNQQTSGVPVQAIPRNPELAWLGRPFVREFPASVIRQFAHARQAPFDVARAALVESTRVQEVAAAGA
LVKNYRLAPAIDPLVTGVEQFHAQRRQGDVDMAVARERASLSDVLAAVEASGHHYPLLHFTCCRGETTPPGAPPDAVAPP
LAPVSARYLQQWRERSGVAQPRPPTPLGAEPPVHGPDRYGHRTIVQLGSDALTETAARRLFRKHAGNASWYSQDASGQLT
QVRAPAAPATGPQKIQFVGHGSILEGMPLLGGNNAAQLARMLPAIRQGLPATARVEKITLVGCNTGCASRASLRNLLNHY
LITTAGLSAEVKGYAGRVDVDAAGHKQIVEQGGLGNTPPPEAAPAPRVFRHGNVTLSQSGEARQLTIVGHGFWPRPGPAD
QPDGASPPGWVRLPANTSMYFYSRENQLVGGLPSQAALRAPMLAAQGQGAAELFSRAVIRGFAHRHQLPFDVARHTLVGA
TRPQDIGEPGALIKDYVVSPAPETGLGAIEDFHAARQQPDMDLAQAAPGSEIRLSEILQAVAQSGVRYDLIHYACCRAEI
PATDTPTQQVATPVPAPDKLVIQQWHSGAGAARPPSPQAQAQAPYGPDRYAHRVIVQLGSDTVTESAARRLFRKHAATSL
WYGQTLEGTLMLKQGGDTPAAGPLKIQFVGHGGPRYSMPLLGGNTPAELAQMASTIQHAGPPSQLEKVTLVGCQTDCVAR
PSLRKLFSTVLATEHGLTPAVTGYAGRVDVDAAGRKRIVEQGGLNEPRAQAGASTAAPNRIVQSVAHGVALSQSGQARQL
VVLAHGGWKDKTTSRYLRRVRGDGYTELPANTRIDYYTEDGIPTKGFAVYQEVTARANDTYTGLQPTLAISPADLEALAR
MHNTSPQALTDAMLASAVGRRESIIGAATMKDYALYYHEQFALNFLRRHNADGSSADVDLAIITEPTHKRHLSDVLKAAG
ESGAHYDVVHFGACRVGRCRNAAAEMGASATSRLPP
>SEQF2266_AEE68112.1 phospho-2-dehydro-3-deoxyheptonate aldolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHNTDDLRIREIKELNPPAHVMREFPCSKDVSEIVYAARQGMHRILHGMDDRLIVVIGPCSIHDTKAALEYADRLKPVR
DRLAADLEVVMRVYFEKPRTTVGWKGLINDPDLDGSFDINKGVRVARELLLDINSRGLPAGCEFLDMITPQYIADLVSWG
AIGARTTESQVHRELASGLSCPVGFKNGTDGNVKIAVDAIKAASQPHHFLSVTKGGHSAIVSTAGNEDCHVILRGGKAPN
YDAASIEAACQDMAKAGLAQRIMIDASHANSSKKPENQPLVVDDVANQIEQGDARIVGLMIESHLLGGRQDLVPGQALTY
GQSITDGCIDWDASVQVLERLAHAVRERRRASLSAGK
>SEQF2266_AEE68113.1 hypothetical protein BPTD_2878 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLIDPAISALATAKNLLLDPWGLTEADLARALGEIFTHKVDYADLYFQYTRSEGWSLEEGIVKTGSFSIGQGVGVRAVS
GEKTAFAYSDSLSADALLSSARTVRGIARQGAGKVKVAAQVPPVDGRSLYADIDPLVTLTAADKVALLERIERMARARDP
HVIQVMAGLGAEYDVVLVAGSDGRLAADVRPLVRLSLTVIAERNGRREMGHAGGGGRTGLAYFTDDILRDYVERAVHEAL
ANLEARPAPAGEMTVVLGSGWPGILLHEAVGHGLEGDFNRKGSSVFSDRIGERVASPGVTVIDDGTLPDRRGSLNIDDEG
NATQRNVLIEDGILRGYMQDTLNARLMKTAATGNGRRESFAHLPMPRMTNTYMLGGATPPEEIIASVKRGLYAVNFGGGQ
VDITNGKFVFSASEAYMIENGKVTYPVKGATLIGNGPDAMNRVSLIGNDMRLDSGVGTCGKDGQSVPVGVGMPTLRMEGL
TVGGTA
>SEQF2266_AEE68114.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGDPRTDTTPSCRVAAIQMVSGPDVDENLAQAAELIGKAAQDGARLVALPEYFCFMGHTDTDKLAIKEESGYGKIQSFL
SNISSQYGIWVVGGTLPLTSPDPQRVFNTTFVYGPGGQPAARYDKIHLFNFQRGAESYDEAIAIRPGKAVQVFDGPCGRV
GLSVCYDLRFPELYRAMGTVDLILVPAAFTYTTGQAHWELLLRARAIENQCYVLAPAQGGRHSTGRRTWGHSMLVDPWGQ
VLDVLPEGPGVIGGTIEAARLAEVRASLPALRHRVL
>SEQF2266_AEE68115.1 putative DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRENYAVLQAKIEKEITKLKHKAEALHTRRRKPVIASIVKSMREYNITPEEIAAAFGSAKSVRAPSAPVRRKAGAPVAK
RAVAPKYRHPQTGETWSGRGKAPRWLAAEEAAGAKRDSFLIRD
>SEQF2266_AEE68116.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68117.1 hypothetical protein BPTD_2882 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEHPFHVLDVPGAPIGEADLHAYADGQLGDARRAEVAAFLAAHPEAHARVEGWRRQNAGLRALLDPVLEEPLPLRLPLA
PPPARYRWGMLAAGLAIAVTSASAAWLVRGELDARQAVAQRQAAAEGMVFARRAAVAHAVYAADVRRPVEMGAEQEQALV
TWLTRRLGAAVHAPNLAAAGYHLMGGRLLPGGQGPVAQFMYGGPGGQRLTLYVTREAQGDQTAFRFTQDGPVRVFYWVEG
KFGYALSGELERDALLKVAQEVYRELG
>SEQF2266_AEE68118.1 putative RNA polymerase sigma factor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPEDEALIVACIPSLRRYARGLTGERDRADDLVQDTLERAWSRFSRWQRRGELRAWMFGIMHNQFIDGLRAQKRQADYG
AETEIPELPVRATQADRLEVRDLDRHLQRLPADLRAVLLLVAVEEFTYREAAQVLEVPIGTVMSRLSRARERLAALLQAQ
ARAPAASTVQRIRAT
>SEQF2266_AEE68119.1 hypothetical protein BPTD_2884 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIRHTAALLLVSSLYAGAALAQAPAMEKGGMLVDAKGMTLYTFDKDAGGKSVCNDQCAKNWPPLMAAGDAKAQGDWSIV
KRDDGSSQWAHKGKPVYLFAADAKPGDKTGDNKNNVWHVIKP
>SEQF2266_AEE68120.1 putative nucleotide-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSFDVVSEVDKHELTNAVDQANRELSTRFDFKGTNASFELEGYVVTQVAPSAFQLKQMLDILRGRLSARSIDVRCMDVA
DPLENLGGARQKVTIKQGIEQAIAKKLIAAIKASKVKVESQINGEKLRITGKKRDDLQAVIALLRKTDVDLPLQFENFRD
>SEQF2266_AEE68121.1 hypothetical protein BPTD_2886 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLYASLKFLHLLSIILWVGGMAFAHCFLRPAVAALEPPARLRLMHDVLGRFLRATQYAVLIVLATGAYMMAQAMGAGLAR
PPVGWHVMAGLGLLMALVFVHVRYVLFRRLARAVAAQDWPAAGAAMAPIRGWVAVNLALAVVILAALMLA
>SEQF2266_AEE68122.1 hypothetical protein BPTD_2887 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATEIYVNLPVADLPRSVAFFKQLGYAFNPQFTDENATCMIVDDNIYVMLLVEAFFQTFTPKAVCDAHTQTEVLLCLSMD
SRAEVDRMVRRAVAAGGKTYNEAKDHGFMYQHGFQDLDGHIWELVYMDPTAAPPPGD
>SEQF2266_AEE68123.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRIACSRQPSEPSAAGGRLWRPLRALLAALALALLAACGSTSGGSGGAFYRVQSGDTLHSIARKHGQSVGDLVRWNKLA
NANRIEKGQLLRVKPPGTGGSASPPPRAASGKSAGGAPAKPAAPIRGITLIWPADGKVTRQFNGSSVLGITIANSAGASV
VAAAGGTVAYASNGLRGYGNLVIVRHDGSFLTIYAHNRKLLVKQGQRVSQGQRIAEMGDTDSSQVNLYFELRRDGKAVNP
AGALPRR
>SEQF2266_AEE68124.1 putative chromate transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPASPPPPAPGTPPSQAEAGGVGEVFGAFLRLGLTSFGGPVAHLGYFRHEFVQRRRWLDDAAYAELVALCQFLPGPASSQ
TGMALGLARAGWAGMAAAWIAFTLPSALFMLAFALGLGQLDGLAASGALHGLKLAAVAVVAQAVWSMGRSLCPDRARQAL
ALGAAIAALLLPAAWMQVGIMLACGLAGWRLLPALAAPAGTALAVGVGRRTGLCALLLFALLLAGLPLWAAASGSPAWQL
ADGFYRAGALVFGGGHVVLPLLQAAVVPGGEVSQAAFLAGYGAAQAVPGPLFSFAAFLGALLPAPLGGWPGALACTALIF
LPGALLLVGALPFWNVLRGRPAVRAALAGVNAGVVGILLAALYDPVWTGAVASRPDFAIAAGAFGLLAWGRLPPLAIVAL
CAAAGALAG
>SEQF2266_AEE68125.1 hypothetical protein BPTD_2890 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTLVLRAKRWLYLLHRWMGVGLCLLFVLWFASGVVMMYVGYPNLTPAERLAHLPGLDAAQVRLGPAQALRAAGLEQAAE
IRLAASRAGQPFYAVVPLAGGRTLRVDAASGQLAGRATPAQARASALAYFGARHAAREGGLVSEDAHTHTRTLDEHRPLY
VFEMDDPARTRLYVSSSTGEVVRDAPRLERGWNYVGAWLHWLYPLRGAYWHDIVVWLSVLGVALTVSGTVVGLWRWRFAR
PYASGSRSPYRERFMRWHHIAGLLFAATTLTWIFSGLMSMNPWQVFGTRATQLDRAAYRGGPLQADNLPAGPAVAMPARK
LVWTRVAGQTLLQVYGAAGAPALRTADGAAPRTLAPATLGVALGRLLPSAAPPRIEVLDGYDSYYYARAPHTMLGHVEKP
LPVWRVVYDDPRGTWLHVDPRSGEILGSLDRPRRVSRWLFAFLHSWDWPPLLQRRPAWDAVLIVLSLGGLLLSGAGVVIG
WRRVGRKLR
>SEQF2266_AEE68126.1 putative TonB-dependent receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQTSLYYATLGLVGLALAAPARAQEQSLPVQLAPVVVHGAPEANGPLNLDAVDSTGSRLGLTLRETPASVTVINREQIE
ARGALDTQEIARGIVGVDNASPPGSAGSVSYRGFSGSQVSQLFNGISVQYDVVAARPIDSWIYDRVEAIGGPSSFLFGAG
AVGGAINYVTKVAQRDTFYDGQLRLGSYGARQASVGLNRQLAGEPGGRGQYLRIDANANASDGWVDGNRSHAEQVAASLL
SDLGERVTHTLALEYQHEMVHRPYWGTPLTTDGDGVVRGEGHIRGGTRWKNYNVDDGRYEQSVWWLRSLTEWQASDRLSF
RNTLYYYRADRDFQNLETYRYNPGNSQVLRSGALLQRHEQRLLGNRIEGLYHGSLGGLRSDWSFGADYSVNRQTRYPTSV
AGQVDSVDPYEFDPGEFYDIPGMRRGHVPDRDNKVRTLAFMLENRTEVGGGVALVTALRHDIIDLDLTNRRAASAASPGH
ASRRYNPTTGRVAVNWEVSPGATLYAQYATAADPPSGVLSTATFADVLNNDKLTTGTQVEAGGKFAFWDGRGTATVAVYE
IKRKNLATPDPLNPGSSLPVGSQSARGLELAGGLQLTRALSLQANLALVDPRYDDFSQNVGGVAVSRNGKVPVNTPRRLA
NVWLDYAFAPDWRASLAARHVGKTYADAANTVWAPAYTVFDAALSHRIDRHFSVTARVRNLTDKVYAASVTGAPMYYLGA
PRSVELALQARF
>SEQF2266_AEE68127.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIQTGSRSRRLLARPLAWIALLAILWAACAPLLMQMAPQRHAPLALSVDYCTEQGTATVQLPLLLADAGQADEQDGHGAH
HDGLGHLEHCPFCRHAQGDLALLPVMPRVQPLPARAISYPPLYYVARASQHAWTGAQPRAPPAAA
>SEQF2266_AEE68128.1 hypothetical protein BPTD_2893 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKSTTAMLTLALSSAAVLAAAPAAHAADMEKCYGVALKGKNDCKAGAGTTCAGTSKVDYQGNAWKQVPKGTCEQTKSPT
SPTGFGQLEAFKEVKTGS
>SEQF2266_AEE68129.1 hypothetical protein BPTD_2894 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNVPAMPARASRPAPGLPARAGLGFKPEHYATLVEQPPDLGFFEIHAENYMVPGGPAHAQLAWLRERYAISVHGVGLSLG
GHDPLDARLLAGHRQLQRRYAPDSISEHLAWSRHDGRYFNDLLPIVYDDAALRRVCAHIDQFQQCLGQPILLENPATYVR
FEASHIDEAQFLCELVARTGCGLLLDVNNVYVSAVNHGFDARAYLARLPLAAVGEIHLAGHARQRDAHGRAVLIDSHDAP
VDEAVWDLYEYTLALTGPVATLLERDGNIPPLAGLLAETGRVTACLARGLALAA
>SEQF2266_AEE68130.1 hypothetical protein BPTD_2895 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHPQAAFARALLDPLAPCPPGLRRAGDADPAQRYAIYRNNVVASLIQALADTFPVCRELVGADFFHAMAHAYVARRLPRS
PVLARYGGAFAAFVAAHAPAASVPYLADMARLEYLRVRAYYAADAVALDAAAAGARIAALRKPASARLRLHPAARALVSP
YAIHALWAAHQGALDIAEVDPYAAQGALVLRDPAEAVLAIPLAASAAAFVRALRAGLPLGAAHSQAADPGLALNHLLALL
IRHGAIISIEE
>SEQF2266_AEE68131.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRFACRLHAHAIRCFERIPHCLIALLGRCSIAATFWLSGQTKVEGFAVNALAGEFDLGWPRLSESAISLFRDEYQVPLL
PPELAALLAASVEHILPVLLILGLATRWSALGLLLMTLVIQVFVYPDAYATHGVWATVLLYLVARGPGCVSLDAWLARRR
ARRQA
>SEQF2266_AEE68132.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSLSAARAHRSLGWSLALLAFAQLIYSLDINIVFVALPEIGAGLGFSEQTLQWVVSAYTVFCGGFLLLGGRAVDLLGQR
RMFIGALWLYALSSLVGGLAWNPAVIVIARAVQGIGAALLFPSTLSLINRLFEEGPPRNRALAIWGGAGASGLTLGSLAG
GVLTSAYGWPSVFFVNVLLAGIAIVAAFLVIPKDAPRAARRSFDMPGALTATAGATLLVYALVQGPEDGWLATPIFASLA
LAAVFLLAFAVIESRSRDPLMPMRLFGNGSLVVGMILTFIFMGTFGALPYFLTLLFQNVQGYSALQTGLAFIVPSLAIFF
GTQLGARLANRMSARSTLVAGFVTGIAGTLALASAAFVGAPYALILPGLVVSGIGQGIVWTAMWIVAASGVAHHEQGIAS
GMASTTLNVGNAIGIAVLVAYANRGIGGLHGDALRAGLAAGAQHAFYLAAAGLVLGLLVSLAFSPRAGAGARVGAA
>SEQF2266_AEE68133.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPNHPERGQIRLENVLNALGNPLRLTVVRALAAGGECSCSAVLQGIPKSTLTHHWRVLRDSGVIWQRPNGRENLLSLRR
DDLDARFPGLLDTLLGAVHHDALTEETTARNLAPR
>SEQF2266_AEE68134.1 cytochrome 0 ubiquinol oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHAVTSEDHGHADHGSLKSYLIGFAISLVLTFGSFGLVMAGTVPRGIALAGVVVLCVAQLLVQLVFFLHMGGSKKQRDN
VTTFVFTILIIAIIVGGSVWVLHNMNANMMHPMPG
>SEQF2266_AEE68135.1 cytochrome O ubiquinol oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNAVATHPHAGDHHGHHDDGSKTVLGFWIYLMSDLLIFSVLFATFAVLSSATAGGPTGKDLFDLSFVLGETMLLLVSSF
TFGMAMLNLHAGSKGKVIAWLWVTFLFGAGFIVMEVYEFHHLLSIGAGPQTSAYLSAFFTLIGTHGLHVTFGLIWILVMI
HMLSRYGIDPITTRRLSCLSLFWHFLDIVWICVFTFVYLLGAL
>SEQF2266_AEE68136.1 ubiquinol oxidase polypeptide I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFGKLSLEAIPFHDPIIMGTMVVVILGSATLLGAVTYFGKWKYLWTEWFTSVDHKKIGIMYIIVALVMLLRGFADAIMMR
TQQAVASADSAGFLPPHHYDQIFTAHGVIMIFFMAMPFITGLMNIVVPLQIGARDVAYPFLNSLSFWLFMVGVVLLMLSL
FVGEFAATGWLAYPPLSGLDYSPGVGVDYYLWALQLSGLGTTLSGINFIVTIMKMRAPGMALMKMPVFTWTALVTNILIV
AAFPVLAATLALLTLDRYLDMHFFTNDLGGNVMMYVNLIWIWGHPEVYILVLPCFGVFSEIVATYSKKTLFGYKSMVYAT
ASIGVLSFLVWLHHFFTMGAGANVNAFFGIMTMIISIPTGAKVFNWLFTMYRGRVEFSLPMLWTIGFMIIFVIGGMTGVL
MAIPAVSFVLHNSLFLVAHFHNTIIGGVVFGCIAGMVYWFPKAFGFKLNERLGKYSFWCWFVGFFLTFTPMYLLGFKGMT
RRLNTYDNPEWQPYLLVALVGATLIMLGIFFLLQQVFVSIRDRKENMDVTGDPWGGRTLEWSTSSPPPFYNFAHVPHIDS
LDQFWEDKENGRAYQRPAKYEDVHMPRNTAAGIYIGAFGLAMSFGLIWHMWWLAIVGFLGMIVSFVVRSYDRDVDYYVPA
KEVEEIENAYFGKLQQKAA
>SEQF2266_AEE68137.1 putative ubiquinol oxidase polypeptide II [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKHPHLATIARTLGVGAVLLLGGCTLEVLSPKGDIGAQEKTLILTALGLMLIVVVPVILMTLYFVWKYREGSVHAQREYA
PKWSHSNAIEAVVWTVPCIIVAILAVLTWKSSHALDPYRPIESDVKPVNIDVVSLDWKWLFIYPDYDIATVNEIVFPVDA
PVQFRITSASVMNSFFIPQLGSQIYSMAGMETKLHLIAREAGSYDGLSANYSGAGFSGMRFKAIATTDQGFEDWIARIRA
TNNPLTPQAYADLAKPSERTPVTLYSTAPTGMFDFIMHNQMSKLAGVDPFNCTPATKNLIATAE
>SEQF2266_AEE68138.1 putative two component system response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLSEPGLLIDDDELYLRTLQRSLARQGLETRTAASIAEALRVAEDIRPSFALVDLRLGEEDSGLTLIRPLRALRADMRI
LLVTGYASVATAVEAIKRGADDYLPKPATAPMILRTLGLLKAESVTIESTMTPLHRLEWEHIQQALSETGGNVSAAARLL
GMHRRSLQRKLAKKPGPEREAQLD
>SEQF2266_AEE68139.1 putative two component system, histidine kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGSSALSFLRTLCSLRWLAIAGQAVTIVAVSSVLELDLPLRPLWLGVLVLVAFNLYASWRLRRLSDVSHVTAFAHLLVD
IGVLAWMVGWSGGITNPFGLMFLILTALAALALPSNWALATGLASLAGYTLAAIFGQPLRHEDTYTLLLGGLAFNFVISI
GVVLYFSTRLAADMRARERELAALRERFTRNEGIVALATHAAAMAHELNTPLATMTLLADEIAAQASTVDLRNDVDTLQQ
LLTLCRERIRNLAVPTEVDLVSVVGQWRLVRPTVDLHRTGSLPASLRVDPAIAHLLQALLNNAADAGEAAGEPRVDLRLD
YRDGVLTGEVSDHGAGFDPSHTLLPATSLFNSGKPGGLGVGLALSHVTVEQLGGAMTMTAAEGGGARIRFTLPLGLGRAS
AKP
>SEQF2266_AEE68140.1 hypothetical protein BPTD_2905 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDAGVAICELLWLAFVATSAGVHPPVFFIRPAMSPSPLISHRAASADLAGMVRQARQRIFLQGDLPGFDVARQIELLLG
LAESELGRFLLLYRGLNAEWTHRLVTHQPGSGALAPLERVFYERLPAVLATRERHGHFRRALQRHLRPGCVAASVPCGWM
SELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHPLAAQITLHRQDAWALDTREGYDLLTSNGLNIYEPDDARVTELY
RRFWQALKPGGVLVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED
DRARLFPTVIARKPA
>SEQF2266_AEE68141.1 hypothetical protein BPTD_2906 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQVIGTHSAPRPHWVGDGFPVRSLFSYHSLGRELSPFLLLDYAGPAQFDATARQRGVGEHPHRGFETVTIVYEGEVAHR
DSTGQGGVIGPGDVQWMTAGAGILHEEFHSEAFARRGGPLEMVQLWVNLPARDKMTAPTYQSIVDSDIPRLALDGEAGTV
RVIAGAFGEAGAGPARTFTPVNVWDVRLAAGKQAVLPVPDGYNAALVVLRGTVLVNGAQVLRDAQMAVLERGGAGVQVEA
NNDAVLLVLSGEPIDEPVVGHGPFVMNTQAEIVQAIDDFNRGAFGRMG
>SEQF2266_AEE68142.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQSAVSHAIANLEAQLRVTLFDRSVYKPALTPAGQALLADVRIILAKVDALRAHAHELGEGVELGLSLAVDTLFPPDAVA
HALKAMHARYPSVGVRVEYASLGGPAQALKARRCTLAVAVLERPDDQIRRRFLAPVTTWAVAAPGHPLARGEAGTELADH
LQVVVEDLSAATRGRDYGVLSPRTWRVGDMVTKLALLRAGVGWGSLPAWLVQADLRAGTLVRLPLAELGPDGAVQMRAYL
SHCADEPLGPAARSLCDSLREGAAALRG
>SEQF2266_AEE68143.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIWSSVRLSSMIEIIDQLGRKYVISWNMKDWHSSAMPAHRNPPMSRSLASALPAAPGAGAARHGRVVALVVGAGIVSAM
QVGKVPAALPELRAALDASLAQASWLLSAFAAIGAALGAGVGMAVDAWGARRMAVAGMLAQGVASLLGAMAGAIGWLLAL
RVAEGIGFLAVVVSAPSLIVAATGTAPARARALAAWSTFMPLGVAAAMLSAPALEYLGWSGMWRLYGLALLAYACWLAWG
TRGLPGMAAARRTTLARLRATLAAPGPRLYAMLFGLYTAAYFSIFGFLPSILAERLHVAPWAAGPLAALVVAACVGGNLG
GGALLARGVRRTRLMTAGFVLLALGTAVTMAPGVPGAAAYLACLAASALCGLVPTALLAGAPQHAPQPELAGATMGIIMQ
GNNTGLLVGPAVAGAIAGAWGWTWVAAWVGLLALAALGLIALLARTPREQTP
>SEQF2266_AEE68144.1 putative racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRVGRSGRHGAADCGTFLGERDMGPLQGTRVVELAGIGPAPMACMLLADLGAEVVRIERAESVELGVVRPARYNLLMRN
RCLVAADLKQPAMVEQALDLVARADVLVEGFRPGVAERLGLGPQACQARNPRLVYGRMTGWGQSGPLAQAAGHDLNYVAL
TGIIHAIGRAGQPPSIPLALTGDMAGGALYLALGVVAALLERSRSGLGQVIDAAIVDGAASLATVFYGLCAAGLWQDARG
TNILDSGAPFYDVYECADGAWISVGPIEARFYAQLLEKLELRAQDVGARDDRAAWPRAKMAIASRFRTRTRDAWCALLEG
SDVCFAPVLSFEEAPAHAHLKARGTFVEVDGVVQPAPAPRFGRTPPATPRPPSESPDSTLAAVLARWAAEDEARRG
>SEQF2266_AEE68145.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLRQLQQFVVLSETLNFHRAAERLHMAQPPLSTAIRKLEDELGIVLFDRKPRSLSLTVAGAAMLKHARRTLSNVDELQR
CAREYVSGDQGRIVVGFSNTASNAVLPRILHSFQARYPRVELVLHESTTHELVSELAAHTVDVALLRTPLFDACDAELID
LEQDHFILAVPADHPLAQQSCARLADLDGQRFIAFSREKVPAMHAIISLAFGEAGVTPKVVQQIVQVPTAIALAESGIGM
ALVPSAAARYLRTGARLLPVVDLPASLRIGIALGYDAQTASAATLRFVENTRAAHAAAPSPPA
>SEQF2266_AEE68146.1 hypothetical protein BPTD_2912 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSNRRRMLTAMAGMAGMTAFPFAHGSAGAWPERPIRLILPYAASGPTDVVARRIAARLAERLGQQFIVENKPGAGGNIA
SEFVAKSAADGYTALYHSSGIAIAPALYSKMGYDPARDLAAVAMPASIPAIIIAGPALPASVTTPAQFVQYLKDNPGKLS
YGSGGVGNITHLAVELMLQETGTQATHVPYKGTAPAMVDLIGGRVHFMLDALSTALPAIREGRARAIAVTSPQRAAVLPD
VPTLAETVIPKFAATTWHGVFVPASTPAAVVARLNAEINLVVQEPELARQFAEQAVELHASTPAAFSAFLGEEIARWGTA
ARDAGVQPA
>SEQF2266_AEE68147.1 hypothetical protein BPTD_2913 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLLDTEVRIYWEDLELGTRFGTRKRTVTETDLVNFVNLTWLTEELFSNGEPADRAHMGITGRVVPGGLVYVFAEGLVAP
SFQAAGIAFLNAELDIKGPTFVGDTLHVECEVVQRRMTSRPGRGLVRTRNTVVNQHGEPVLAYTPLRMMRTRQIP
>SEQF2266_AEE68148.1 ArsR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDADHADARLAAVAAAIADPARARMLCSLLDGCARTATELAALADIGASSASAHFAHLRAQGLVELAVQGKHRYYQLADA
DVAQALEALLVVAGVPRVPFKPATPGPLCHARTCYDHMAGTVAVRLHDAMLAQRWLQPDGRDYRVTPAGAAALTSLGLDL
GAIGRQRRRHAYPCLDWSARRPHLGGALGAALLQCCLQHGWVEQQLDSRALRVTAQGERRFDAWCRPRGRLADAA
>SEQF2266_AEE68149.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE68150.1 putative riboflavin-specific deaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTSTPTDDVSWIRRALALARSVMYSTAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASLAGATVYVT
LEPCSHFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNAGFAARMSRGLPWVWL
KLATSLDGRSALHNGVSQWITGEAARADGHHWRARSGVVLTGMGTVLKDDPQLNARAVQTSHPPRKAVIDGRFEIPEDAR
LFDDGAQVLIFTARSDAAKARRMADRNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELL
VYLAPVLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRARVASRWRALQDSVSAASRQRG
>SEQF2266_AEE68151.1 hypothetical protein BPTD_2918 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVLARPRPGAQNSASATPKPLPRSLAMKQALIVIDVQESFRHRPFWDDSELPAFLAQVQALIDGCRQRDIPVLQVFHVN
AANDPASPFAPASGHVVALRELRIAPTAVFRKTVHSSLYARDEAGHTLHDWLLEHGVGEIIVCGIRTEQCCETTTRHASD
AGFKVRFALDATLTFAMRAASGKTYTPAEIRERTELVLQDRFAQVLPAAAALAA
>SEQF2266_AEE68152.1 transcriptional regulator NrdR [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRCPFCGNADTQVVDSRVSEEGDTIRRRRRCLSCDKRFTTYERVELAMPSVVKRDGSRTEYDAGKVRGSLSLALRKRPVS
TDEVDSAVARIEETLLASGMREVPSEQIGELVMGELKRLDKVAYVRYASVYKSFEDIGEFVEAIREMQGPLLPGKKLRKD
>SEQF2266_AEE68153.1 serine hydroxymethyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFNRNLTLDQVDPDVWAAIQKEDVRQEQHIELIASENYASPAVMQAQGTQLTNKYAEGYPGKRYYGGCEYVDVVEQLAID
RLKQIFGAEAANVQPNSGSQANQGVYMAVLKPGDTVLGMSLAEGGHLTHGASVNASGKLYNFVPYGLDADEVLDYAQVER
LTKEHKPKLIVAGASAYALHIDFERMARIAHDNGALFMVDIAHYAGLVAGGAYPNPVPHADFVTSTTHKSLRGPRGGVIM
MKAEFEKAVNSAIFPGIQGGPLMHVIAAKAVAFKEALSPEFQDYAQQVVKNAKVLADTLVKRGLRIVSGRTESHVMLVDL
RPKGITGKEAEAVLGQAHITVNKNAIPNDPEKPFVTSGIRLGTPAMTTRGFKEAEAELTANLIADVLDNPRDEANIAAVR
ARVNELTARLPVYGN
>SEQF2266_AEE68154.1 hypothetical protein BPTD_2922 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLSSLSFSDNESIPERYAFGRIDAQSHVALADNFNPQFSWDDVPDGTQSFALICHDPDVPSQPDDVNQEGRTVPADLPR
VDFFHWVLVDLAADMREIQEGAFSDGITPRGKGGPLAPNNARQGVNDYTGWFAADRDMNGDYFGYDGPCPPWNDERVHHY
VFTLYALDVPSLNLQGSFTGLDALKAMQGHVLAQASLTGTYTLNPDLAPRQIGATTSS
>SEQF2266_AEE68155.1 tyrosyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHPEAPITPEVEADLAIARRGCDELLVESEFARKLARSRATGVPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHNV
IFLIGDFTSTIGDPSGRNSTRPPLTREQIETNAKTYYAQASLVLDPARTEIRYNSEWCDPLGARGMIQLASRYTVARMME
REDFTRRFKGGVPIAVHEFLYPLLQGYDSVALKADLELGGTDQKFNLLVGRELQKEYGQEQQCILTMPLLVGTDGVEKMS
KSKGNYIGISEAPESMFGKLMSISDTLMWRYYELLSFRSLADIAALKAEIDGGRNPRDAKVALAQEIVARFHSPQAAEAA
LAAFEARFRDGAIPEDMPEVTVGGAPQGILRILREAGLVASGSEAQRNVEQGGVRVNGDRVEDKSLQLSAGTYVVQVGKR
KFARVKLVG
>SEQF2266_AEE68156.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68157.1 hypothetical protein BPTD_2925 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRGPNSLVRSFKRKVAALFAPPVEPTSRGGALLRRTLTVSALGLFAGAAALGMVQQPDRSELPPLRLIDSVLPLEAGQM
QVSDASNAPYISETRIRAGDTLAAVLQRLDIDSPRLQNFLTHDASARSIYKLYPGRSVQAATNENGDLVWLRYIHTPGNE
SGGQVVTRLLHVAPDGANGYKAEEVTQGTEQQTRVAVGTIRSSLFGATDAAGIPDSVTMQMADILSSKIDFLRDLRQGDQ
FRVVYEVRTHEGRYAGAGRVQALEFINGDKTYNAVWFSPDGKSGSYYDFDGTSLRGAFLRTALKFSRISSTFGMRMHPIH
KTWTGHKGVDYAAPTGTPIHATADGTVEFAGWQNGYGNVVIIKHHGKYSTLYAHQSRIASGLKKGQKIAQGELVGYVGST
GWATGPHLHYEFRVNNQPIDPLAVDLPVARKLEPAELRAFTQAVQPYKQQIKLLTEFQQTLPEGSATVASR
>SEQF2266_AEE68158.1 anhydro-N-acetylmuramic acid kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSTTHGPRTHVPGRLFIGLMSGTSMDGADGVLVRLDGPRPEVLASASLPMPAALRDELFALNHAGANELERAALAANGL
ARLYARAVRQLLDQAGLQPGDVAAIGAHGQTVRHRPDLGYTLQLNAPALLAELAGIDVVADFRSRDVAAGGQGAPLVPPF
HAALFAGGQARAVLNLGGIANVTLLEPGRPPRGFDTGPANVLLDAWCQRHTGQPYDADGRFAAQGQVLADLLEHLIASEP
WFALAPPKSTGRDLFNLDWLLARLQAFDGPAPQPQDVQATLQRLTARTVANAIDASAAAPRDVLVCGGGARNPGLMRELA
YCLQRPVRPTDDAGVPAQWVEALAFAWLAQACLDRIPAGLPTVTGARAARVLGALYPA
>SEQF2266_AEE68159.1 iron-sulfur cluster insertion protein ErpA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAVTETVDLQAPPPVPLVFTDSAAAKVKDLLAEEGNPELKLRVFVQGGGCSGFQYGFTFDEVVNDDDTVLDKAGVQLLV
DPMSFQYLVGAEIDYKEDLEGAQFVIRNPNASTTCGCGSSFSV
>SEQF2266_AEE68160.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDDSASVQPRAPVARPQGRARAWLALAAGLVVGAVAGWRYGLAHQGPDDAVVLTRQQVAAQEAAMQQREAEARFLRAQL
DTADGEIAVERAARTELETQLQSAQSEVGRVRDQLAFYEQLLPPGPAGSVDIRGVAFEREGQGLRYKVLLMRSGRGETPF
SGALRFQATGTLKGETVTRDLEPLTVKAEGGGATVPEAGASLLALQFDQYQRSQGLLDLPDGFVPETVTVSVLEDTTVRA
TRTVKLEF
>SEQF2266_AEE68161.1 N-acetyl-gamma-glutamyl-phosphate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQASNSRIKVGIVGGTGYTGVELLRLLSQHPHVELTAITSRKEDGLPVADMYPNLRGRVKLAFSAPEKASLTDCDVVFF
ATPHGVAMAQAAELLAAGTRVIDLAADFRLQDTAVFERWYKIPHTCPDILADSVYGLVELNREAISKARVIGNPGCYPTT
VLLGLAPLIEGGKQLVDVQTLIADCKSGVSGAGRKAEVGSLFSEASDNFKAYGVAGHRHQPEIVAQLEKLAGGKVGLTFV
PHLVPMIRGMFSTLYARILPQARDTDFQALFEARYADEPFVDVMPAGSLPETRSVRASNNLRISVQRPGGGDQLVILVVQ
DNLVKGASGQAVQNMNLMFGLPESAGLDQVAILP
>SEQF2266_AEE68162.1 30S ribosomal protein S9 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGNWNYGTGRRKTSVARVFIKKGSGKIVVNGKPVDEFFARETGRMIVHQPLELTGHLESFDIKVNVHGGGETGQAGAVR
HGITRALIDYDAALKPALSQAGFVTRDAREVERKKVGFRKARRRKQFSKR
>SEQF2266_AEE68163.1 50S ribosomal protein L13 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTFVAKPHEVKRDWFVIDAKGKVLGRVASEVAHRLRGKHKPEFTPHVDTGDYIVIINAADIVVTGNKAQDKKYFRHTTY
PGGIRETNFEKMQQRFPGRAIQKAVKGMLPKGPLGYAMIKKLKVYAGAEHPHTAQQPKPLEF
>SEQF2266_AEE68164.1 putative exported solute binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRRSFLKHAGLGAVAGSAAVAAPVFAQDAPTLNWRMASSFPRSLDTLFGTGEIFVKFVSEATGGKFNIRQFPGGEIVPA
LQVMDAVSNNTIECGHTVSYYYYGKDPAYCFDSAVPFGLNARQMNAWMFDGDGMKLTREMFKPLKIVNFPMGNTGVQMGG
WYRKEIKSPEDLKGLKMRTAGFAGEVLSRMGVVPQQLAGGDVYPSLEKGTLDAVEFVGPYDDEKLGFNKVAKYYYYPGWW
EGGPQVSLYLNEGAWEGLPKSYQAIVEAASRVAHVAMTSRYDALNPPALRKLIAGGAELRAFPRSVMDASYEAALTVYKE
FSDKDPKFKAIYENYMGFRDSVVPWFRLAEGSYDQYLGVAMAGRK
>SEQF2266_AEE68165.1 hypothetical protein BPTD_2933 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVNSSNSLPIAANHARFSELVEQVLAYARQAGASDAAAEVSESLGLSVSVRKNDIETVEQTRDRSLDLTVYAGQSRGSAS
TSDFSEQALRETVEAAWHIARHTAADPAAGLPDADLLATEFPDLGLHYPWPVTTEEAAELALRAERAARDVDARITNTDG
ASVASYEGQFVMGNTRGFLGGYPYSRHSLSVAPIAGRGNNMQRDYWYTSDRNPNRLAAPEVVGRYAAERTLSRLSARRLR
TGKFPVLFEAPLALGLLGAFTQAANGGALYRKATFLVDALGKPIFADHIDVSENPHIPGAMGSSPFDDEGVRTRARSVVS
AGVLEGYFLSSYTARKLGMATTGNAGGSHNLTLSSRLTRPGDDFEAMLRKLGTGLLVTELIGQGVNYVSGDYSRGAFGYW
VENGKIQHAVQEITIAGNLVDMFRHIVAVGSDAISRGTKTTGSILIEQMSVAGT
>SEQF2266_AEE68166.1 hypothetical protein BPTD_2934 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIAVQFAETVIIAKSVSTQFPMSSHSQEPVGEENFDDSEYDRPNKSQVKREMHALLDLGKELVELSPERLRQLPLEERL
YEAIREAQRTTGREGRRRQIHFVGKLMRSAPAEAIRAQLDTWRNGSREETAAMHRLEALRERLLTDDDALTAVLQRNPDA
DIQHLRALIRAARKEAAANAALSQGQEPQRKQYRALFQALKNLSA
>SEQF2266_AEE68167.1 carboxylesterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAQTDLLDCIELETAPNPTHAVIWLHGLGADGNDFVPIVPELRLDGLAVRFVFPNAPVQPVTINGGMAMRSWYDILVTD
LVRREDAAGIRASEAAVRTLIARENERGIPASKIVLAGFSQGCAMTLHTGLRLDQQLAGMMGLSGYLPLLDSAAAERHPA
NAATPIFLAHGLYDPVVAPERADASRAHLQALGYDVRWHTYPMPHSVCLEEVADIGAFLREVLR
>SEQF2266_AEE68168.1 putative ABC transport proteins, ATP-binding component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAVVHNLMPAPAAAKIELREVSLSYFTPEGKTEALSKVSFSLAPGEFVSLIGQSGCGKSTLLSLIAGLIPPTSGAVLVD
GTPVTRPSPRIGYMLQQDYLFEWRTILDNVMLGAEIQGRRDARSEARAVHLLEKCGLGAFLEHTPRQLSGGMRQRAALAR
TLVTEPDVILLDEPFSALDSQTRLAISDEVVDILRRERKTVVLVTHDIGEAIAMTDRVIVLSRRPGRLKSQYCINFAEPR
PTPFQARSRPEFNTYFEQLWEELDVHVEG
>SEQF2266_AEE68169.1 putative ABC transport proteins, inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPAANTLALRPAHAPSEKYQEYLRRDRRRKHHVRLAQLMLLVLFLCAWEILPRMHVLNPLLTSYPSALWPTFFELWNH
GNLPRHIAATVMATLVGFGLSMLIGVAVAAALWWSDFLYKVIDPFLVVANAMPKIAFVPIFYLWLGSDYAVYGMAVAIAV
FVTIMVVYAGFRGVDPNKMKLAYTFGASRWQVLTKVILPGSVPTLIAAVKMNIGLALVGVIVGEFQSADLGLGFLIMNGS
QIFKLNIVMTAITLLALISSVMYLVIYRLEAAVARRYA
>SEQF2266_AEE68170.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFPQWVVDRVQARQGCLHPYDSLPGPRTAAVVIDMQRYFTLPGYQGECAAARAIVQPINRLCAAVRAAGGSVVWVQTAS
DHADSFWSHHHGVMLTPERSKRRLETLKRDSEGYALHPDMDARAEDVRVTKRFYSAMAPGSSELEPLLRGRGIDTLLIAG
TVTNVCCESTARDAMMRDFRTIMVDDALAAVTPAEHENALHGWMLFFGDVLSVDEASARLAAADETRRIA
>SEQF2266_AEE68171.1 hypothetical protein BPTD_2940 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIRLNSIFVDDQDKALRFYTDVLGFTKKHDIPAGAARWITVVSPEGPDDLELVLEPNGHPAASAYQAALRQDGIPVTAF
ESADIHAEARRLKDRGVAFTIDPTPAGPATIAIFSDTCGNLIQLYQVER
>SEQF2266_AEE68172.1 ATP-dependent RNA helicase DbpA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNTSFSSLPLLPALLDNLQGLGFEQMTPIQAQSLPLILEGRDLIAQAKTGSGKTAAFGLGVLQNLDVNRLAPQALVLCP
TRELADQVAQELRRLARLIPNVKVLTLCGGAAARPQAESLARGTHLVVGTPGRIQDHLARGSLDLSTLNTLVLDEADRMV
DMGFYDDIAAIASHCPARRQTLLFSATYPDNIRKLSARFLRNPAEIKVEAQHDASRIEQLFFEIDEGQRLDAVATLLAHF
RPASTLAFCNTKIRSHDLVERLRAQGISAQALNGDLEQRERDEILIQFANQSCAVLVATDVAARGLDIQNLGAVINVDVT
KDTEVHVHRIGRSGRGDQKGLALSLCSPEEMRWANLIEQYQGAPLKWADLGSLRPKSDRPLRAPMITLCIQGGKKDKLRP
GDLLGALTGDGGLAFEQVGKINITEFNAYVALDRQVAKQAFARLSNSNIKGRRFRMRFLEEF
>SEQF2266_AEE68173.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGQQVVITAAHWMYLLGVVVIVITMIFRANVVVPSLLGTLLVGIAFGGSIVSGVTAVFNASFMAAKELFNIFLVIAFMTA
LLNALKTLGSDVRMVQPFRAVMTNGHIAFVVLALATYLISLFFWPTPAVPLVAAILLPVAIAAGLPPLGAACAIAIAGQG
MALSSDYVIGVAPGISAKAAGVATALVAERTLILSLVTGIVALVLAYVGMRRQIQAPSEALLDAWQRRAVVVPESVEESG
TMDKGELAAAVDYDSGSVPLGKQGWSRLFAIVTPVVFLLVVLVMVAPRLFPSLPALRGGEAAALVGGAAALLMVAATAVG
VPGRDFLNTAADHVTDGFVFAFKAMGSVLPIAGFFFLGAPDQAAGILGVEPGHAPNLLFDLLQAAQGWIPNSHLVVAFGV
LIVGVITGIDGSGFSGLPLTGALSGALGATVGVDAATLAAVGQMGAIWTGGGTLVAWSSLIAVAGFARVPVLELVRKLFG
PVVLGLIVSTVAAVMFMT
>SEQF2266_AEE68174.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLGSQHSPLFALVQETLRKRILSGAYAQGERLVEGDLAEEMGVSRIPVREALRALAAAGLVRIEPRRGASVASLSPEHA
RDIVEVRATLEALNARLAAQPRNPQQVVDMDRAIRDGAHACEHGDTAALVEQNRQFHELLGGVSTNAVLQDLMRSLRDRT
ALLFARNSVTRAADILDEHAGILQAVTAGDADLASLLAARHVHNAAQWYFERPVDRKAVAADTD
>SEQF2266_AEE68175.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68176.1 hypothetical protein BPTD_2945 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRHVLAPMFEPASLVVIADRLLPVTSVLPSALRARTTVVQAAPGAAPELPAACAGVAEGLRPDLALVCVAPGVLPETLR
RLAALAPRAVILLPHELPDPYPRGTQALCRAWAAENRCELLGPRSFGAQRPHAGLNLSQHPSLARAGRVALVAQSRSIMA
AVMDWAEDVHIGFSIAVSLGDEAVVGLSQVLDYLASDSRTDSIVLYIEDVGPAREFMSALRAAASVKPVIVLKAGRADAN
GADAVFDAALRRAGAVRVRYFVQLFSAVKVLGYTRRPRGRRVALFSNGSGPPQLALDLIGPDAAVLQAKLSPATQRTLAD
MLEPDAATANPVITYTPLTPERIQAILDCLLDDAGVDGVLVLLAPDALADMPAVARQLAQLAPRARKPVVSCFMGDAGMR
PLRRMLDDAGTSAFRTPESAADAFGVLATHHYNQQLLLQTQPPEPPGLLPDSAGARDIMGQARAQGRRELDPIEARALLD
AFYVPLREGPLGVRPIEAESRPMAIRVRRDPHFGPVIRFGAGGPDAVLSGADRGMDLPPLNGFLARQMIERSRLWRRVLA
PQVTNAAAEALQHALVQVSEMVSELPDIESVDIDPLYAGETQLRAGGLRIVLCEREATVSPQLSGYAHMAIHPYPARLVQ
ARRFDDGTPWVIRPIRPEDGEPLQEFIRGLSERSRYMRFVSMMRELTPRMVARYTQVDYHRELALVAATQVPNPANRGHP
REVIIGFAHYLRNPDGRGAEYALVIGDDWQRRKLGGQLMSALIDAAREQGLEYIDGLVLSTNRPMLTLMTRLGFTNDADP
EDPTMRRVWLQLREPDAPA
>SEQF2266_AEE68177.1 glutamyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTRFAPSPTGFLHLGGARTALFSWAFARHHQGVFVLRIEDTDVERSTPEAVQAILDSMDWLGMQPDEGPFYQMKRMDRY
AEVLAGMLEAGTAYHCYCSPEEVDAMREAARAKGLKPRYDGTWRPEPGKTLPPVPADRKPVIRFRNPIDGATSWNDMVKG
PISFDNGELDDLIIARPDGTPTYNFCVVVDDWDMGITHVLRGDDHVNNTPRQINILRALGATLPEYGHVPMILGPDGEKL
SKRHGAVNVMEYDAQGYLPEAMVNYLARLGWSHGDDELFTREQLVEWFDTRHLSKSASQWDPKKLNWVNAHYIKGMDDAE
LAGRVAPRVERRGGKPQAADLPAIMGLLKDRAETLEQLAEDAMLFCGEYQPAPAELAAQHLTETARAALADFAARARDTE
WNRAAISALIKAVLADRGLKMPQLGIPLRVAVTGRAQTPAVDAVLELLGKETVLARLQAL
>SEQF2266_AEE68178.1 putative membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLSSESRAILLLALAAFASSTAFRICDPMLPQLAADFATTTGQAAYAVTAFAIAYGVLQMFFGPLGDRYGKYRVVCIAT
FACALGSAAAVLAGSLDALVAARALSGAAGAGVVPLSMAWIGDNVPYERRQATLARFLTGTILGMAAGLFADTVGWRWAF
AVLVVIYLVVGTLLYRELRRQAASGQTGAAGAARTGFVAQARLVLGTPWARVVLATVFFEGLLVFGTLAFAPSYLHARFG
ISLTAAGALVASYALGGLLYTLVAGHVLRRLGERGLALAGGLVLSAAFLCYWLGPQWLWSLPAGVLAGFGYYLLHATLQT
NATQMVPAARGTAVAWFASCLFMGQAAGVALAGLVVDAAGAAMLFGMTALLLPLLGCGFAWALRRHAAAQTAQAA
>SEQF2266_AEE68179.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFVLRGSEEVMSRVSISLVGALGVALMLGGCAARKESAATAPRATPEAPEAVACTPAQAGDPMVGTWYSVSRQRGFAGDF
QALTVLSADGTMRYETQLKVGRKTRPALRETGCWHVADGIYTMQTMQSNGEPVDASDPIYQNRYRVEKVDSGKLTLRELK
RNGQAVTARRMQPGYRLPY
>SEQF2266_AEE68180.1 AsnC family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKTDIGILKALQEDGRASAQQLSETVGLSAAPVWRRVKALEANKVITGYSAQVDRSKVGLQGCMFAQISLERHSAGTVE
TFERSVRDAPEILECYAVTGDSDFLLKILVESPEAYDRFLHRFLFNLPGIRQTRTIVVLRELKHEVRLPL
>SEQF2266_AEE68181.1 ribonucleotide-diphosphate reductase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTTIASVTRPTAVPPAQSETSTDPNSGQWASYNIIRRNGSVVGFEPSKIAIAMTKAFLAVNGGQGAASARVRELVEQLT
AQAVSALVRNRPAGGTFHIEDVQDQVELALMRSGEHDVARAYVLYRERRAQERAAAAEVLEKSSPAAAQEPTLSVVDNGV
RRPLDLAALRATIEAAGEGLTQYTDTEAILKETVKNLYDGVPVDEVFKSAILAARALVEKDPAYSQVTARLLLHTIRKEV
LGEEVSQADMATRYAEYFPAFIQRGIEGGLLDAKLAEYDLERVAKALDGRRDLQFGYLGLQTLYDRYFLHVRGTRIELPQ
VFFMRVAMGLALREADREARAIEFYEILSSFDFMSSTPTLFNSGTLHSQLSSCYLTTVSDDLEGIYDAIKENALLAKYAG
GLGNDWTPVRALRSHIKGTNGESQGVVPFLKVVNDTAVAVNQGGKRKGAVCTYLETWHLDIEEFLELRKNTGDERRRTHD
MNTANWIPDLFMKRVMENGEWTLFSPSDCPDLHDKYGKAFEQAYAGYEAKVASGELKLFKKMPAVSLWRKMLSMLFETGH
PWITFKDPCNIRSPQQHVGVVHSSNLCTEITLNTNATEIAVCNLGSVNLVAHMKPNANGGYELNHDKLKRTIGVAMRMLD
NVIDINYYAVDKARNSNERHRPVGMGIMGFQDCLHVMRVPYASQDAIDFADRSMEAVCYHAYWASSELAQERGRYQSYEG
SLWSRGILPQDTLAMLREERGGNVDVDDSSSLDWDTLRSRIKEHGMRNSNCIAIAPTATISNIIGASACIEPTFQNLYVK
SNLSGEFTVVNDYLVRDLKKLGLWDEVMVADLKYFDGSLSRIDRVPSELRKLYATAFEVEPSWLVECASRRQKWIDQAQS
LNIYMSGASGKKLDDTYKLAWQRGLKTTYYLRTLGATSAEKSTGRGGELNAVSAGDHGAGSAVSAAPVLPEPEIVGAVCT
MRPGDPGFEECEACQ
>SEQF2266_AEE68182.1 ribonucleotide-diphosphate reductase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNWEEENIATKPATSPAPAGGREAAPAVRAATGVFGDAALPTPTAPQHAASLGASDATAGRVKVADKRIINGETDVNQL
VPFKYKWAWEKYLATCANHWMPQEINMSRDIALWKNPNGLTEDERRIVKRNLGFFVTADSLAANNIVLGTYRHITAPECR
QFLLRQAFEEAIHTHAYQYIVESLDLDEAEIFNAYNEVPSIRAKDEFLIPFIDAIADPNFHTGTPEADQKLLKSLIVFAC
LMEGLFFYVGFTQILALGRQNKMTGAAEQYMYILRDESMHCNFGIDLINTIKLENPHLWTPEFREEIRELFRKAVELEYA
YAEDTMPRGVLGLNAPMFKSYLRFIANRRCQQIGIEPLFPQEENPFPWMAEMIDLKKERNFFETRVIEYQTGGTLSWE
>SEQF2266_AEE68183.1 histone protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATAKKAAKKAVKKPAAKKAAAKKATPAKKAAVKKVAVKKVAAKKPAVKKVAAKKPAAKKVAKKAVAKKAVAKKAVAKKA
VAKKAVAKKAVAKKAVAKKAPAKKAVAKKAVAKKAVAKKAVAKKAVAKKAVAKKAPAKKAAPKKPATPPSTAAAPGAKTA
LNPAASWPFPTGGRP
>SEQF2266_AEE68184.1 putative integral membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATALMLGDIIRFLLEITFTLFGAALILRAWIHAVRLHPFNPLARAIYQGTNWLVLPLRRVIPATGSIDWTSLIATWVAA
LIYLILVWLSAVGALPPASALPSAMGSALLMVLKWTLNLMVWMTLIQAVLSWVNPLSPLMPLLQTLTAPLLDPIRRILPR
TAIDFSPLVLLIGAQILLMMVARLAYGIFGV
>SEQF2266_AEE68185.1 putative D-alanine-D-alanyl carrier protein ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGMYFDLRSFEFVSDARGGQADAVVGSDRVLTWQALREEAGQWAARARAHGIGPDVPVVIHGHKEAAFFVAMAGALLAG
APFVPVDTIYPPERVRRIVEIVRAAAVYDTQADVFRPGAAEPAALAERGLAYVMFTSGSTGDPKGVQIGRESVALLGDWL
RDGLALGEAPVFMNQAPFSFDLSMYEVFGTLAAGGTCVLNAREQIAAPQQWLGRLAGSGVTVWVSTPSFAHQQLVNRDFS
PQQLRALRTFLFCGEPLPVALARKLRQRFPEAAILNTYGPTEATVATTALVVDDAVLAEHDPLPVGYAKPASLLYVADDE
ICIVGDYVMRGYLNRPDLNQAKLFVHHDGRRGFRTGDLGRMREDGLLFCRGRMDDQIKLNGYRIELAEIDAALHALPGVA
GGACAVLRRPDGTAVRVIGFVAQRTMEQASFQLPAALQQWKAQLTGRLPSYMVPSELVACPDLPVSNNHKIDRKKLLEIY
AAIPAAA
>SEQF2266_AEE68186.1 putative protein involved in the transfer of D-alanine into teichoic acids [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELFGSFAFFGGALFGGLGLLLYRTLGLPWRLGYRHLIGALCLAVWLAVFWTRPYQPLGLLAVASAALWAMRRGHLPTWA
AVLLTMALLLLLKCGITTMTGMLGLSFATFRAVDVLLFAPRNERISPLDYCNYLFFPLTLLAGPMYRWRNFQADLKRGYE
GVTLETWLAGLELLIFGVIQKFGVAEAIWRYGLNTLDAHDYSLTGVALNASLYSFYLFFDFAGYSSMAIGVGMLFGFTLP
VNFRNPLASANPQDFWRRWHISLSEWLRDVVFMPIYKALSKTAFFGRHRLAAQNIGILATLLAMGVWNGLALHYVVSGLM
FGAYSVGHNLLVQHARTRPALQAFLARRPVQWAGRALTLILAALALYVFSGRSPI
>SEQF2266_AEE68187.1 hypothetical protein BPTD_2957 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRFFWHLCLYLGLILVFVLQAQPTTGSGGPIKVEFQYQQF
>SEQF2266_AEE68188.1 putative protein involved in the transfer of D-alanine into teichoic acids [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASAVALSLGLYWGADGALSALVHPHSSVASVRDNYLPNLGPDWGTQNVNLNRLGNALADGTLVVLGSSELSSHDLRFVP
YRFFPQELKVPTLAYGHAMFQSYGIVSVLEAVADSLTPNTRLVIMVSPAWFASGGQLPRSAFAEHVTGPVWDRLWDKPAT
REQMQDWIADNANWGLLWLIANGQVAELKDKIALWWNSRGERAPDRPRSPLAVPAHKYVSWPAAARLDAGRWHDLLGQAR
GIEAELGGHNPYDVRDDYYRQYLAPLNSPARNEFPEMPPMTRPELGDLARVMALLQQRKVRAYFVIQPFNPKLILDVERF
DPVADAIKGMCARYGMGCLDMYSVPFQPGMVRDDMHLAELGWAIADQGIAEFFSR
>SEQF2266_AEE68189.1 acyl carrier protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHTEQELHTRIADIVESIILKKVTPDTALISSGLVDSLAAVDITLAVESEYGCSIPAPEIAEHLQSVRTLAGYVAANSQ
>SEQF2266_AEE68190.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNYMHSPSVVAGRARRLLAVAAVAGSVAVLAGCANPSASSGVYTYGQAQREQIVRTGTVTGVRPITIQNDKSSGVGLVAG
GALGGVAGNAVGGGTGRTIATVGGVILGALAGNAIENRAGKSSGYEITVRLDNGETRVVAQEADVPISVGQRVQVISGAG
PTRVTPY
>SEQF2266_AEE68191.1 putative carbohydrate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAPVLVCGSMAFDTIAVFEGRFKEHILAERIQSLSVSFLVPAMRKEYGGCAGNIAYNLKLLGGQPVPVATVGEDAGEYL
ARLSGLGIDVSRIQVVPGTFTAQCFITTDLEDNQIAAFHPGAMEFSSGNDLSDAQAAWAIIAPDSKAGMFAHAERLHARG
IPFIFDLGQAMPLFDGADLERMLKLAQALTVNDYEAGVVEQRTGRSLAEIANGLRAAVVTRGAHGATVMAGGQTIEVAPV
QAQAVVDPTGCGDAHRAGLLYGLTSGWGWADSCRLGNLMGAIKIASRGPQNHAPSRGEIDALMRANYGIGLPD
>SEQF2266_AEE68192.1 hypothetical protein BPTD_2962 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALTTRCPQCGAAFRVVADQLRVRNGLVRCGECATVFDGRACLVPAPDAGAPRAAAPPVLSAPPSDPPYAQPAAPAPAAP
ATQAPPAVLRGRADMQRGDGPPADEDEPDAMAEGAPEDEADWDAAPRPESAEAGWRPILPRDPAHDDREPAFRIGRTATA
CAAADAEDAVQVPGEVRTRYSNAVDSGRTPPEFLDDDRIQARQLVRRLWAYACVLGVLALAAQLVYVYRGAIAGAAPALR
PVLEQACVPLQCSVGHARRIERISITSSSLRPAAGAAQGDDARTRLTLNVVLRNRYDRPQEWPALVLDLTDISDTVVARK
IILPQDYLPSQAGPAFAAGGEINLAIPVEVAGLQVNGYQLDKFFP
>SEQF2266_AEE68193.1 acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFEKILIANRGEIALRIQRACRELGIKTVVVHSEADRTAKYVRLADESVCIGPAPSRESYLNMPALISAAEVTDAEAIHP
GYGFLAENADFAERVEKSGFVFIGPRPETIRQMGDKVSAKRAMIEAGVPVVPGSEGALPDDPQEILRIAREVGYPVIIKA
SGGGGGRGMRVVYTEAALLNAVNMTRSEAGAAFNNPEVYLEKFLENPRHVEIQVLADGGRNAVWLGERDCSMQRRHQKVI
EEAPAPGIPRRLIERIGDRCADACRKMGYRGAGTFEFLYENGEFYFIEMNTRIQVEHPVTELITGVDVVQQQILIAAGEK
FTLRQRDIQFKGHALECRINAEDPFRFVPSPGRITNWHVPGGPGVRIDSHAFNGYFVPPNYDSMIAKVITYGDTREQALA
RMRIALSEMVVEGISTNIPLHRELLQDARFIEGGTSIHYLEHKLAQRP
>SEQF2266_AEE68194.1 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLRKLKTLIDLVAESGIAELEITEGEGKVRIVKFSQALQPVAYHMPEAVAPAAAPAAAAAPAAEAAPAAPQGHVVKAPM
VGTFYRAPNPGAAPFVDVGQSVKEGDPLCIIEAMKLLNEIEADKAGVIKEILVENGEPVEYGQPLFIIG
>SEQF2266_AEE68195.1 3-dehydroquinate dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQRILVLHGPNLNLLGTREPHIYGSLTLAQIDQGLAALAGQLGVALTSWQSNHEGALVERIQAAAADGTDFIIINAAAY
THTSVAIRDALAAVAIPFIEVHLSNLYKRDSFRQHSYLSDLAIGLITGLGADGYEAALRYAARH
>SEQF2266_AEE68196.1 thioredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHCYDRAMNRRLFLYAGVAAAAAASGGYFLAERRNARPAPSVAAPAEGAGDPLAQLRQLALPDLHGTPRKLADWGGQPLV
VNFWATWCAPCVKEMPELDALQKKYPQVRFVGIGVDTTDNMRKFVEKIPVSYPLLVMGAGAIDTLRSLGNPSGGLPFTLL
LSADGSMKRKILGQIVYDDLDRSVAGLSA
>SEQF2266_AEE68197.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHLHILGICGTFMGGLALIARSAGHKVTGCDAGVYPPMSTQLAEQGIELIEGFGADQLALAPDLFVIGNVVSRGNPLMEA
ILDSGARYISGPQWLGEHILPGAHVLAVAGTHGKTTTSSMLAWILQCAQRQPNFLIGGVAPDLQVSARYAPGARPFVIEA
DEYDTAFFDKRSKFVHYRPRTAILNNLEYDHADIFPDLAAIETQFHHLVRTVPSNGQLVLPTDAPALERVLERGCWTPVA
RFGPGGQWQAGPADEQGAFEVSVDGRDAGTVRWTLGGEHNRRNALAALAAARHAGVAPAEGIEALSRFGGVKRRMELRGT
VNGIRVYDDFAHHPTAIATTIEGLRRQVGAARILAVLEPRSNTMKLGTMAARLPEALAGADLVFCFGDHAGKHALGWDPA
RVLAPLGERAAGYDDLPALVRAVAAAARPGDHVLVMSNGGFGGVHGKLLDALAQPR
>SEQF2266_AEE68198.1 hypothetical protein BPTD_2969 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPILYLHGFRSSPDSFKARLLAQAMHQRGLAGQWQCPQLPASPQQAAELALALAREQLAGQQDPRRLTVIGSSLGGYYAT
WLAERLGCQAVLLNPAVQAARDLATQVGEHRMYHSDAPFHFLPEYVEELRALYADPLTHPERYFLVAATGDEVLDWREMR
DRYPGCRQRIVQGGDHGLSDFPRWMPEVLEFALGSPH
>SEQF2266_AEE68199.1 hypothetical protein BPTD_2970 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYVFYDDDGGFKAGNILSETDASLQVESETGKRSKIKRASTLFTFAAPEPAALMAQAATLAEDIDLQFLWECAPQEEFDA
PALAAEYFGHAPGPVEQAALLMRLHGAPAYFHRRGKGRYRPAPPDILAAALAALEKKRLQAEQQQQWIDEMAQGRLPEAI
AQAAESLLVRPDKNSMQWKAFDAACTQLQKTPERLLLDLGAWPHPLALHKRRFLAVNFPRGVGFPAMDVPSIERELPLAE
GEIYSVDDITTTEIDDALSVSALPDGKIRVGIHVAAPGLAITRGSEHDKLARTRLSTVYMPGEKIPMQPDNVIQAFSLDA
GRPVPAVSLYVTADPRTGAIEASETRLERIVVRENLRHNDLDAQISEAALADPDAPLAYGHWLRPLWQLAQALGAQREAV
RGKPENNTRVEYSFYLDGSPDDPDTPVRLVPRQRNAPLDRMVAEYMILANNIWGGLLNQHGVPGIYRSQQAGRVRMSTQA
LPHEAIGVPQYAWSTSPLRRYVDLVNQWQLIAAVEHGVSARLVAPFKPRDADLYAIIGAFDAQYAAWADFQNAMERYWCM
RWLKQQGISRTTAHVLREDLVRLANAPLVTRVGGLPELERGAAVQIDIMNMDELALELDCRYLGPAD
>SEQF2266_AEE68200.1 hypothetical protein BPTD_2971 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRSASSSSILTRFWRWLGAPAQHYLLVGTAISLLVHAGALAWRFAGPAPARPQASTLEIVLVNARTDSAPVTAQVLAQS
QVDGGGNAARGLAATPLPQTGRNAETIVLEAMRKRQAQLEAEQDRLLTQLQSQARTGQERQPVHPWPDASEPGLDPREQP
GVIQNAQIATLANRVQAYNAQPRKEFVAPAAQASRHAAYLDAWRTRIETIGTRHYPEDARGRIYGSLRITVTVRADGSLA
DFEIDQPSPHAVLNQAARRIVQMAAPFPPFPPEMARDTDVLVITRTWHFVNDSLETTAP
>SEQF2266_AEE68201.1 shikimate 5-dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLPASPPRYAVIGNPIAHSRSPQIHAMFSAQTGRPLRYERLLAPVDGFLPTVQAFRESGGLGLNVTVPFKLEAYALAEA
RLSERARLAGAVNTLSWRDGAWHGCNTDGVGLVNDLLRLGVALAGARVLLVGAGGAARGVLQPLAAAGCARIHIVNRTAA
RAAELAAAWRAAAPRTGTQVSAGALAQAAEPGGWDVAINATASGLQGAAPDLPGGLYAPDALAYDMMYGARPTAFMRQAE
ADGAARCADGLGMLVGQAAESFHIWHGVRPDPGPVLLALRTELLAAG
>SEQF2266_AEE68202.1 palmitoyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQYFRSLAFFLLPVPATAMACDGWPSWARGACQRVDQIWNEGGNDLYLTGYSWHNRAMYSSDKIRSFNELAWGGGLGKS
IYDEDGDWQGLYAMAFLDSHSDIEPIAGYGFQKIGRIGADTRLGIGYTVFLTSRSDIMSRVPFPGILPLVSAGYRDATLY
ATYIPGGKGNGNVLFMFGRWEF
>SEQF2266_AEE68203.1 hypothetical protein BPTD_2974 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVLVMSLRESAAAADAGAGPLAGSARDLLAQWNGGEDVWVFAYGSLIWRPDFAWQERRLATVRGYHRSLCLWSHDHRGSP
DNPGLVFGLDRGGCCRGVAFRVAGRDVPEVFQALWHREMSGGAYKPRWLRCHTGQAPVRGLAFVPDRRCRHYAGALSDEL
LIRAVRQAVGRSGACLDYVRETHRALNEHGIVDWRLGALVDRLAQP
>SEQF2266_AEE68204.1 glutamate uptake regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGVPVDQTDIKILRLLQKDATCSVAEIAEQVNLSVTPCWRRIQKLKDDGVIARNAVLLDPKALGLNLTVFVSIKTNQHNA
KWTDNLINAVMSLPNVVEFYRMAGDIDYLLKVVVEDMAAYDRFYRRLIEAVDLLDVSASFSMEVIKSTTELPLDAV
>SEQF2266_AEE68205.1 putative D-amino acid dehydrogenase small subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMRVLVLGAGVAGMTAAYYLWRDGHAVTVVERQAGPARETSFGNAGGLCPSFAGPWAAPGMVAKVLRMALQRNAPIRFSL
APRPRKLAWLARWLGECSAERFRVNKLRMQRVAHYSQACLREIAAAGLPISFDFHQDGTLQLFRGEADLKAVPNITRALD
EFEVPWQFLSGAEAAAREPALAGAGAPVAGGLFLPLDGSGDCYKFVCGIGAWLAGQGVAFRYGCTVASLAQAGGAIAGVH
TDQGLLQADAYVIALGGSTPFLLRPLGLKLPIYPVKGYSITAPIADEARAPRAAIMDEYNKVMISRLGPRLRAAGMAELK
GYGLAIDPGRVAFLKRVVREWFPQGADYDAAQAWAGLRPMTPDGPAILGPTRYANLYLNCGHGSNGWTQACGTGRIVADI
VAGRTPQIDLDGLTADRYT
>SEQF2266_AEE68206.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLGIAGRTALVFGGSRGMGRACARQLALEGVKVTLAARTAQTLEQAAAQITREAGIGVGWVAADLTRAEGREAALAACP
APDILINNADGPLPGDFRDWSRDDWISALDAMMLGPIDMIRRVVDGMTQRGFGRIVNIVSRSVKAPHAELGLSNGARSGL
IGFVAGLARQTVRHNVTINNLLPGAFATDAQVRHIQGLVEQSGQPFEKLWEERGRANPAGRYGQPEELGALCAYICSMHT
GYMTDQNILIDGGGLSRHLLTRTRGAGAAA
>SEQF2266_AEE68207.1 hypothetical protein BPTD_2978 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANPFRNVAPRIGRLSAFVHPMRTPPLVSVPISPSLQNLCASVQSAQLNAAQALLRELAASVAGANGALADLPPELRAGH
PDHYSRHVAYADPHGSFTIAYLIWRPGQFSPVHGHKTWCTYRVLQGELTESHYRWDPELGLALRTGAVARRPGDIVTATP
GLAQIHRLGNAGDEVAISLHIYGVAQSDIATGVNHVVQEAAPRPH
>SEQF2266_AEE68208.1 hypothetical protein BPTD_2979 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRDPWMAGRPFSLTLWGRKSMKPRILKGFAASLCALALLGAGVAYAPAHADERPLVLVVPYPPGGSTDILARIMQPRLSK
ELGGRAVVVENKVGAASQIATAYVARAEPDGNTLLVSFDNHAINPAVKPKLPYDTFKDFVAISQTVRFPLVVGANPSVPG
KTLAEFLDAARKRPANTFNYASTGVGSLNHLVPEELKRRAKVELLHVPYGGAGPAVQAVVGGQANMTWLSYAALRGQIQA
GKIKPLAVAGDKRLSDLPEVPTVIESGFPGFVAYSWSGMFAPAGTPADTVRKLTAAFQTVLADPEVSRKLNEAGFEIVAS
DGPALEQYVRSEYERWDSFIKANNISLEN
>SEQF2266_AEE68209.1 hypothetical protein BPTD_2980 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLHAVGRTEFDHAVVMVRDRLDALAPHFERQGFHLSEKAVHNLGSCNRLIVLEGTYVELLGWPPGAPPARKEIADSPLGL
EALVFRTYDAEATYRRLLEAGFAVNPVQELTRAAQWQGREVQARFHTVRFAEQPIPGIRMYFCRHLTPELVWNDELLSHP
NGARGIVSIEADAADAQAVAQRLAAVVDVPAEAVAGGWDVPLGNLRLRVRQDPACATPRLRTLTLENRDGAHYTLDTGV
>SEQF2266_AEE68210.1 preprotein translocase subunit SecA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVSLLKKLIGSRNDRLLKEYRKQVAQINSLEPKISALSDEELSAKTQEFRDRHQQGTSLDDLLPEAFAVVREAGKRVFGM
RHFDVQMLGGIALHNGKIAEMRTGEGKTLMATLPVYLNAIAGKGVHVVTVNDYLARRDAEWMGRLYRFLGMSTGVVVPQQ
PNDEKIAAYAADITYGTNNEFGFDYLRDNMEYRVEDRRQRRLFYAIVDEVDSILIDEARTPLIISGQAEDHTELYVRMNA
VPPLLKRMASEPKPHEPEPEGDYWVDEKSQQVYMSEAGHESAEKILTRVGLLPEGESLYDPRHIALMHHMMVALRAHTLF
FRDQQYVVQDDEVVIVDEFTGRLMVGRRWSDGLHQAVEAKEGVKIQHENQTLASITFQNYFRMYDKLSGMTGTADTEAYE
FQEIYTLETVIIPTNKPMVRKDQNDQVFKTTQEKYQAILNDIRDCHERGQPVLVGTTSIENSELLAGLLRQAKLPHEVLN
AKQHAREAEIVAEAGKPGHITIATNMAGRGTDIVLGGSVDKQVDLIHANEALSEAEKEARIETLRAEWKPLNERVKQAGG
LRIIGTERHESRRIDNQLRGRAGRQGDPGSSRFYLSLEDPLMRIFAGDRVRAIMERLKLPEGEPIEAGMVTRSIETAQRK
VEGRNFDIRKQLLEYDDVANDQRKVLYSQRNEVLEAASIGATVEGLRDAAVAEMFRGFIPEESVEEQWDVAGLEKALAGD
WHIQLPLTDMLEQEPNLTDEELLERVVAAARQIYTAKVEQVGAESWAQFERSIMLQSIDTHWREHLSALDYLRQGIHLRG
YAQKNPKQEYKREAFELFSGMLDRIRDDVVRVLMTVRVQSAEQVEQAEADAAQPHVQNVQYHHSDYDEALADDGQPQGAQ
PVRNVLPKVGRNEPCPCGSGKKYKHCHGQLA
>SEQF2266_AEE68211.1 M23/M37 family peptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVGATLLTAAIVGAAVQRYMSPSAPAAYAVDWPAYAQAVSPDRDTAFVRENVTMLATKVGTLQAKLASIDGLGRRVAQV
AGVAYTDPELATQLQGMPEEATHVMDDLFTDRQPPSPATAADLAQQLDEIQVRMAQQADNLRLLDAALTRRSADKALLPS
AMPITEYPYLSSSYGWRRNPVTGRYAMHEGLDFSAPSGTPILAASGGVVLVAKYQSGYGNSVEIDHGNGLITRYAHASRL
LVKPGDVVERGQEIARVGSSGRSTGPHLHFEVRLAGQPLDPRLFLGPQQTAPPTVAQAPATAPAASATR
>SEQF2266_AEE68212.1 hypothetical protein BPTD_2983 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGAGVLATARKHLQIQHAVAAVLPPALGALCVVAKLENQHLQLAVPGPAHAAKLRQMAPRIAQTLTGQGWNVNEISVRV
QAGMPRPGQKAPRPPKLAQPLGSTALDAFETLHRGLRPGPLADAVARLLKHHKNR
>SEQF2266_AEE68213.1 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFRQRSIQNLVRTIGVGVHSGRRVELTLRPAEANTGIVFHRVDLPQVVDLPASAIGVGDTRMASVLQQGNVRVSTVEHLM
SALAGLGIDNLHVDLTAEEVPIMDGSAATFVYLLRSAGIVEQNAPKRFIRVLKPIEVREGEGRNEKWARLEPHEGFALAF
SIDFRHPAIDSTANFAEIDFATHSYVREIARARTFGFVNEVEALRSMGLARGGSLDNAIVMDEFRVLNSDGLRYDDEFVK
HKILDAIGDLYLLGKPLVARYVAYKSGHALNNQLARALLEQQDAWELVTYESQAEAPQAFRHEWKLA
>SEQF2266_AEE68214.1 cell division protein FtsZ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMNFEMLENNAKGTVIKVVGVGGAGGNAVAHMIRSGVSGVDFICANTDAQALAATNAPVQIRLGRTGLGAGAKPEQGRAS
AETAREEIRAALNGAHMVFITAGMGGGTGTGAGPVVAEVAKELGILTVGVVTKPFTFEGNKRLRMAEDGIGELGKHVHSL
IVVLNENLYELMDDDATQEDCFKAADDILHNACAGIAEIINVEGNVNVDFEDVKTIMGEQGQAMMGTAAASGADRARVAA
EKAIACPLLEGVDLNGARGVLVNITASRTLKMRETREIMETIRSYASDDATVIFGTAYDEQMGEELRVTVVATGLGREAV
RPQLVQHTSEALRTGTDNMPVGNMLAGQQGDYRGLDMPSVMRNPRSQASAQVRALESSGMDHFDIPAFLRKQAD
>SEQF2266_AEE68215.1 cell division protein FtsA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRDIKDLIVALDIGTSKVVAVVAEILPEGRFEVLGLGQHESRGMRKGVVVNIETTVNSIQRALEEAELMADCKIRDVYA
GIAGSHIRSFNSSGMVAVKDKEVTATDVARVIETAKAVNIPTDQQVLHVLTQEFIVDGQEDIREPIGMSGLRLEVRVHIV
TGAVSAAQNIVKCVRRCGLEVQDLILQPLASSLACLTADEKELGVVLVDIGGGTTDVAIFTGGAIRHTAVIPIAGDQITN
DIAAMLRTPTPDAEEIKLRYGVAKQVLARPDEAVEVPGLGDRGPRQVKRQALGAVIEPRVEELFTLIQQVVRDSGYEDLL
ASGVVLTGGSAQMPGMIELAEDVFLKPVRVAVPEYEGSLADVMRNPRFSTVMGLLQEARMQRLRGRKVAAQTGNFKTLLA
RMKEWFMN
>SEQF2266_AEE68216.1 putative cell division protein FtsQ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWNDARTINLIANTLAVLAVAAMLLAGVAWVAQRPYFTLAAIEIESMPETEMHYVSTGAVRAAIAGRFGGNFFTVDLDEA
REAFESVPWVRHATVRRIWPNTLRVRVEEQQPLALWNENQMINTWGEAFTANTGELADDMVLPHFTGPEGTESLVVQRYA
ELARWFAPLDMHVRELVLNPRYAWAVTLSNGMKLDLGRDPGADAPDPHGLPGALPFAARIQRFVQAWPVVSSRLEGRTVT
QADLRYPTGFALALAPLPPEHASHSKSKPAKKR
>SEQF2266_AEE68217.1 D-alanine--D-alanine ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKQFGKVGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHGRYGEDGTLQGALE
LLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELRLVPDRLGLPLILKPPHEGSTVGITKVAGYSDMK
AAYELAARFDAEVLAEQFITGRELTVAVLGSGAAARALPVIEIVAPGGNYDYEHKYFSDDTQYFCPADLPADVAADVAAV
AERAYAALGCEGWGRVDFILDRENRPWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILAEAACKVRSPARQD
>SEQF2266_AEE68218.1 UDP-N-acetylmuramate--L-alanine ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKHRIQHIHFVGVGGSGMSGIAEVLLNLGYTISGSDLNESAVTRRLAELGMRIAIGHDRANVAGAGAIVTSTAVAGDNPE
VLAARAARIPVVPRAVMLAELMRLKRGIAVAGTHGKTTTTSLVASVLAAGGLDPTFVIGGRLTSAGANARLGQGEYIVVE
ADESDASFLNLLPVMAIVTNIDADHMDTYGHDVARLKSAFIEFTQRLPFYGSAILCADDANVREIMPFVSRPITTYGLSP
DAQVCAQDVQADGTRMRFTVQRRDRDVVLPALQVELNLPGLHNVRNALAAIAVATELGVDDAAIREALAAFKGVGRRFTQ
WGDLPVPAAHGGGIFTLVDDYGHHPVEMAATLAAARGAWPQRRIVLAFQPHRYTRTRDCFEDFVRVLGSADGVLLTEVYA
AGEAPLVAADGRALSRALRVAGKVEPVFVEDVGELPQAILDFVRDGDVVVVMGAGSISKTPALVGELA
>SEQF2266_AEE68219.1 undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPTILIMAGGTGGHIMPGLAVAEVLRERGWRVLWLGNPDKMEGRLVPPRGIELVPLRFQGVRGRGAAALLKLPFLLAR
ACAQAWRRLADIRPDVVLGMGGYVAFPGGVMAALRRTPLVVHEQNAVAGTANRWLARLARRVLSGFPGVLPRGEALGNPV
RADLCALPEPAERYAGRSGALRVLVVGGSLGAHALNTTVPQALALLPEQARPQVVHQAGEQHLPALQQAYAQAGVQADCR
AFIDDMADAMAQADLLICRAGAMTVSEVAAAGVAALFVPFPHAIDDHQTANARFLSDAQAAWLQPQASLTPQWLAQWLGQ
RTRQELQAVAGRARTHALPRAAAHIADVCEQAARRAS
>SEQF2266_AEE68220.1 cell division protein FtsW [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLFAELTASVNAVRPGRTRMRNYDMPLIVAASTLLLLGLLMVYSASIALADGPRYASYGRYYFVIRHGLFLTAGLLAAA
VVLSVPIRVWQRLAVPLFMFALILLVAVLIPGIGREVNGAHRWIPLGPLNFQPSELMKLAALLYAADYTVRKQEHMQAFS
RGFLPMACALGGVGMLLLLEPDLGAFMVIVAIAIGILFLGGINGKYFSSLLAVLVGTFLMLIWVSPWRRARLFAYLDPWN
KANAYGSAYQLSHSLIALGRGEWFGVGLGASVEKLHYLPEAHTDFLMAVVGEELGFAGVMLVITLFAIIVYRGFDIGRQA
IAMERTFAGLVAHGVAMWVGVQAFINMGVCLGLLPTKGLTLPLMSYGGSGIVMNLCALAMLIRVDVENRVMMRGGRV
>SEQF2266_AEE68221.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTTETSRAAAPLVLILGLGETGVAAARWYARQGSPLRVTDSRAQPGGLAALQAALADATVEYRLGCGEQFPPDLLDGVA
QIVLSPGLVPHESPTRELLEQARERNVEVVGEIELFARALAGLAESREYRPRVLAITGTNGKTTVTALTRQLIEAGGMSA
RAAGNISPAALAALMDALDQDDLPQVWVLELSSFQLETTRTLAPDAAVVLNVTQDHLDWHGDMQAYAQAKARILKPARLA
IVNRDDPLAVAMVESLQALNVRSFGRDVPALVGDMGLELGQGVAWLTACESNDFDEPAPAPRRKKDAPPPTRAGGRMSRL
MPVDALRIRGVHNALNALAAMQLARSLDLGWGPMLRTLRDYAGEPHRAELVRSIGDVDYINDSKGTNVGATVAALEGLGQ
QVVLIAGGQGKGQDFSPLVPVVRRHARAVVLIGVDGAAIGKVLEPTGVPCAAAADMREAVRRAAELAQPGDAVLLSPACA
SFDMFRNYPHRGEVFAAEVRELALDRGEVA
>SEQF2266_AEE68222.1 phospho-N-acetylmuramoyl-pentapeptide- transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAIGVFEYITLRAVLACATALLIGLVAGPRVIRRLTEMKIGQAVRAYGPESHLVKTGTPTMGGALILIAIAISTLLWAD
WTNRFVWVVLLVTFGFGWIGWMDDYRKVVYRDPEGMPARQKFFWQATIGLVAAVYLAFAVSAPANTELWPLFKAWVGSGF
TMPLPTRADLIVPFFKSVSYPLGVLGFVALTWAVIVGTSNAVNLTDGLDGLAIMPTVMVGSALGIFAYVVGRVDYSKYLL
FPYIPGAAELMVLCAAIGGAGLAFLWFNAYPAQVFMGDVGALALGGALGTIAVIVRQEIVLFIMGGVFVVETLSVMVQVT
WFKYTKRKYGQGRRIFRMAPLHHHFEVGGWKETQVVVRFWIITMMLVLVGLSTLKLR
>SEQF2266_AEE68223.1 D-alanyl-D-alanine ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPTNRLNAVQRQHLDQALAWLRGCVAPTADLRLDSREIEPGDVFVACPGLVSDGRQFMDQALARGASAILYETEGAPVA
PAGAQALPVAQLRTLLGALADEWYGRPSQDLSVVAITGTNGKTSCTQWLAQVLTRMGKPCGSIGTLGALLPDGQSLGGSL
TTPDVLTMHRTLARMRAAGARAVALEASSIGIEQGRLDHIRIAVAGFTNLTRDHLDYHGTMQRYEQAKAALFQWPDLQAA
VVNADDPAGERLLASLPAALKTGYSLQGAPADVHARDLQATAHGQVFTLTLPDGEVQIVTRLLGQHNISNLLLVAGALSK
LGWPLPQIARELAAISPVDGRLQAVTPVPLQHLTAGAQGALVVVDYAHTPDALARALTALRPVAQARGGRLVCVFGCGGE
RDPGKRPEMGRIAVERADRVVVTSDNPRSESPQDIIDQILAGIPAGMRAAVQPDRALAIMQTLWSAAPDDVILLAGKGHE
TYQDIGGRKLPFDDRQWARLALLLPHAGAVSTDTRRIGRGELFVALSGENFDGHDYLPQAQSAGACAAVVAHPVADVALP
QLVLGDTLAALGRMGTAWRSSFTLPVVAVTGSNGKTTTKEMISAILAQWQGDDGRLATAGNFNNEIGVPLTLLRLRARHR
AAVFELGMNHPGEIERLAAMAAPTVALVTNAQREHQEFMHTVEAVAHENGAVIGALPEDGVAVYPGDEPYAAIWDKLAGA
RRVLRFGLQPGLDVYAERVVTQAHGTQCGVVTPAGSAGLDLPVPGLHNLRNALAAIACGLAAGAPLHTCIAALAGFQAVA
GRMQHRQMSDGTVLIDDTYNANPDSARAAIDVLARLPAPRALVLGDMGEVGDNGPAMHREVGDYAREHGIDALITLGEAS
RDAAHAFGPAARACASVDEVVAALRGLRPSSILIKGSRFMRMERVVTAFSGNNQAPSGQGDKHAA
>SEQF2266_AEE68224.1 peptidoglycan synthetase precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRVPFFDNPVLRGQLPMWRARLVLILLFGGFVVLAGRALFLQGLSTEFLQQQGERRYERTLTLAATRGKILDRNGVVLA
SSVPARAIWAIPEDAKPIPPEQVAALAQLLQTPVAELRRRLADEDRNFVYLKRQVPMDVADKIKQMALPGIHQQPESRRY
YPEGEVTAHIVGFNNVEDQGQEGVELTFNQQLSGQPGSRRVIKDRLGRVIEDVQAVTLPVDGRDLRLSIDTRLQYLVYKE
LQDARVAHQAKSATAVVIDVHTGEVLALVNLPSFDPNHRETFQVSTLRNQAITDTFEPGSIMKPFTAALALDLGRISTAT
MFETGNGRFQYQGSTISDVSRNGTLDLAGVLLKSSNIGMTMISEKLQSREMWDLFTGLGLGQAPQLGFPGAAPGRLRPWD
RWRLIEKATIAYGYGLSVSLLQVARAYTVFARDGDMVSLTLVKRESAPTSVRVYNPKTAATVRAMLEAAAGPDGTKRAQV
QGYRVAGKSGTARKIVDGKYSAQRHRSSFVGFAPVSNPKIVVAVSIDEPQVGGYYGGAIAAPVFSRIVGGSLRLMGVQPD
APFESTIVAGNPEGAR
>SEQF2266_AEE68225.1 putative cell division protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGRISLIVAALLMLSAISLVTSRYQSRQLFIELGRSQAEARDLDTNWRRLQLERAELARNARIDRAARDDLKMIPIVPDR
TLYMNQPAGGAQ
>SEQF2266_AEE68226.1 S-adenosyl-methyltransferase MraW [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFEHRPVLLEPTVDALVLPDFGGKGAHRQAGEPGPDAATRLQHGVFVDGTFGRGGHSRALLARLGAQARLVVFDKDPQA
IAVARELAAGDGRVEVVHGGFATMAEELTARGIEQVDGVMLDLGVSSPQIDDAERGFSFMRDGPLDMRMDTTRGPTVADW
LAQASVDEMREVIADYGEERFAFQVAKAIAACRATRPLHTTLQLAECVAGAVRTREKGQHPATRTFQALRIYINRELEEL
ARALASALDLLGPGGRLAVISFHSLEDRMVKQCIAAAARPAAAHARLPLRESELPQPLVRSLGKVVADDVEVAGNARARS
AILRVAERTGEPLPPGGGAGFVKAGRVPGEPVRGTRAGSKGRRR
>SEQF2266_AEE68227.1 cell division protein MraZ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFQGSSALTLDAKGRISIPTRHRDALMDRAEGRLTLTRHPDGCLLVYPRPEWEEKRAQIAAFPMSARALQRLLLGNAQDV
DIDGSGRVLIAPELRNASGMTRDVMLLGMGAHFELWDAASLARREAEDLAQGMPDVLNQFSF
>SEQF2266_AEE68228.1 putative ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALASLITLTDVQLAYGHHPLLDHADFAIQEGERIGLIGRNGAGKSSLLRLLDGRTQPDDGDIARSSGLRVATVEQEPAL
DETGTVFDVVCDAHAHPEDWQRPARVRAALERLGLPAEAAIASLSGGMRKRVALARALVDEPDLLLLDEPTNHLDFDGIA
WLEAMLRNWKGAAVIITHDRRFLDAVATRIVELDRGRLLSFPGNFSQWQERKAQWLEAERLEQARFDKLLAQEEVWIRKG
IEARRTRNEGRVRRLEQLRVERAERRERVGNVSLALAQGQRSGKLVAELQDVGKAFGDKVVVHDYSTTILRGDRIGIVGP
NGAGKTTLLKLLLGELPPDSGTARQGSNVSVAYFDQMRAQLDENATLVDIISPGSEWVEIGGARKHVMSYLGDFLFSPAR
AGSPVSSLSGGERARLLLARLFARPANVLVLDEPTNDLDIETLELLEELLQEYAGTVLLVSHDRAFLNNVVTQTIAAEGD
GRWRDYVGGYDEWQAQRPAQAAAPKAEKPAETAKPAAARPKPVRAARLSAWDLRELEALPDAIATIEARQAELSGKLADG
SLYRDAPDEVERINAELATLESELEEKFARWELLEARRGDSA
>SEQF2266_AEE68229.1 dihydroorotase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPASMSNQHATELTITRPDDWHLHLRDGSALEAVVLDTARQFARAIVMPNLRPPVTTTEQALVYRARIEAALRKAGGDT
AAFTPLMTLYLTDNTPAEEIVRAHESGQVAAVKLYPAGATTNSDAGVTDLLGKCGAALAALERCGMPLLVHGEVTDPAID
VFDREAVFIERVMQPLRRAYPGLKVVFEHITTREGAHYVRDAEGPTAATITPQHMLYNRNAIFTGGVRPHWYCLPILKRE
VHRQALVEAATSGSPRFFLGTDSAPHARGLKEHACGCAGCYTALHAMELYATAFDAVGRLDRLEGFASFHGPDFYGLPRN
TGTLTLRREAYEIPAEVAFGDTTLVPLSGGESLGWRALA
>SEQF2266_AEE68230.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYARSPLESIRLFHDELTALRRDLHAHPELGFEEVRTSGIVAGALEALGIEVHRGIGKTGVVGVIRGRTCDSGRMIGLRA
DMDALPMTEDNDFGHKSTKPGLMHGCGHDGHTAVLIGAAKYLAQTRNFDGTAVLIFQPAEEGRGGAKAMIDDGLFDTFPC
DAIYALHNWPGLKPGTVGINPGPMMAAADRFEITINGRGGHGAHPYQTIDPVTVAGHLITALQTIVSRNVNPLDSAVLSI
GSVQAGHPGAMSVIPREARMVGTVRTFRRSVQEMVESRMRELASAIASAFGATAEVLYERIYPATLNTPQHANLVADIAT
EMIGRENVVRDLVPSMGSEDFSFMLQMRPGAYFRLGQGGAESGCVLHNSHFDFNDAVIPLGSAMFSALAERGMPLAD
>SEQF2266_AEE68231.1 hypothetical protein BPTD_3002 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATPSKTATARKPNAAFMKPLTPSAELAAVIGSEAVPRTEVTKKIWDYIKKHNLQDASNKRNINADAKLRPIFGKDQVTM
FELTKLVNAHLK
>SEQF2266_AEE68232.1 leucine-responsive regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGLMMLGVELDRTDRRILAELQRDGRLSNQELAERVSLSPSPCLRRVRRLEEQGYIKRYVALVDAEKVGLGLLAYVTIKL
NKHSGGSHAPMGNFARDVQLWPEVVECYAMSGDMDYLLRIQVADLAHFSRFAMDTLMQHPAVVDMKSYFALQQIKETTEL
RI
>SEQF2266_AEE68233.1 putative hemolysin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAENFQPWENPMGTAGFEFIEYTAPDPVALRKVFELLGFKAIAKHRHKDVTLYRQGGVNFLINAKPDSFAQRFARLHGPS
ICAIGFRVQDANKAYKRALELGAWGCDSHSGPMELNIPAIKGIGDSLIYLVDRWRGKQGHGGIGDISIYDVDFEPIDRDT
AQTDLNHTGAGLTLVDHLTHNVHKGRMAEWSEFYERLFNFREIRYFDIEGKVTGVKSKAMTSPCGNIRIPINEEGTEEKG
QIQEYLDLYRGEGIQHIAMATDDIYQTVEALRRNGVVFLDTPDTYYELLDRRLPDHGEDVTRLRKNRILLDGAPGGGLLL
QIFTENQIGPIFFEIIQRKDNDGFGEGNFKALFESIELDQMRRGVVKQVD
>SEQF2266_AEE68234.1 methionine sulfoxide reductase A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSSQPAGAATEAAVLGGGCFWCVEAVFKDLRGVTGIEPGYAGGHVEHPTYEQVCGKDTGHIEVARVEFDPAVLSYGDLL
RVFFATHDPTTPGRQGNDVGPQYESAIFWQDERQREQAQAVMDELRAQQVFDAPIVTRLLAPAKFWPAEDYHRDYYALHP
EQGYCQFVIAPKVAKFRKQFQDRLAR
>SEQF2266_AEE68235.1 cytochrome c-552 precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHLKSSLAAWAVLACLAGGSAGAQPAGEALARNKNCMACHQVDSKRVGPPLRSISERYAGQSEAAAYLAGKIRGGGRGAW
GAVPMPAQPQVSDADAHALAEWILSLPAKP
>SEQF2266_AEE68236.1 dihydroxy-acid dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDNNRSRHITEGVARAPNRAMYYALGYTEADFQNPMIGVANGHSTITPCNSGLQRLADAAIEAIRVSRANPQVFGTPTI
SDGMSMGTEGMKYSLVSREVIADCIETAAQGQWMDGVVVIGGCDKNMPGGMMALARMNVPGIYVYGGTIKPGHYKGKDLT
IVSVFEAVGEYTMGRMDETDFKAIEQCAIPGSGSYGGMYTANTMSSAFEAMGMSLPYSSTMANEDQEKVASAAESARVLV
EAVRRQLRPRDIITLASIENAVAVIMATGGSTNAVLHFLAIAHAAEVPWNIDDFERIRKRVPVICDLKPSGRYVATDLHR
AGGIPQVMKILLNAGLLHGDCITITGKTVAETLANVPDAPPPGQDVIMPIERALYPQGHLAILKGNLSPEGCVAKITGLK
NPVITGPARVFDSEDDAMAAIMDRRIRDGDVVVIRYEGPKGGPGMREMLAPTSALVGQGLGETVGLITDGRFSGGTWGMV
VGHVAPEEFVGGPIALIREGDSVTIDAHQLLLLLLNISDEEMAARRKAWAQPKPRYVRGVLAKFGKLACTASRGAVTDAF
EE
>SEQF2266_AEE68237.1 prolipoprotein diacylglyceryl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLQYPQIDPVALRIGPLAIHWYGLMYLIGFALVYAFGRRRITSGHTTSMTVRDLEDLIFYSVLGVVLGGRLGYVLFYKPA
HYLANPLEIFYLWEGGMSFHGGLIGVIVVMLLFAHKKRLGFFTVSDFIAPLIPLGLAAGRLGNFINGELWGRPTDVPWAM
IFPQSGDGLPRHPSQLYELGLEGIVLFALLWWYSSKPRAAGQVSAMFLMGYGAFRFLVEFTREPDNFLGLLAAGLSMGQW
LSIPMVLAGAGLYLFTARPPSR
>SEQF2266_AEE68238.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE68239.1 hypothetical protein BPTD_3011 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MERVDVTILGRDYSLACSAEEKPVLMAAVRHVDQLMLRIQGSGKVSSNERIAVMAALQVAGELLAMKAPDGPLGGLAVGD
FKRRIEEMNLMLDDALSGQEKLL
>SEQF2266_AEE68240.1 hypothetical protein BPTD_3012 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQVLPNIAVFLSLREEARSVPGWFTIAPMLQDLDQLAARIGQLVQRTRHLHAERDALRVRLNDSESEQRKLKQRCADFET
ELQALQARLREHDGATATQLAEAQQTEVALREQLAREAAERQALESRVSAREAELQGNLRARDTDLQRLRVAASTARERI
DAVLARLPGAPAGEQP
>SEQF2266_AEE68241.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68242.1 hypothetical protein BPTD_3014 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLRNRQDFWSGVMFIVLGLGFSWQASSYQMGTAARMGPGYFPFWLGLVLALLGAIVLISALSKKATETAVEGFDWRIVF
LVVGSVVLYALILKPLGVYLSVFILVVVSSLASHEFSWKVAVANGIFLVVFSYLAFIKGLGLIFPLWPSFLGMN
>SEQF2266_AEE68243.1 hypothetical protein BPTD_3015 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELFDNLMLGFSVAFTPENLAYALLGCILGTLIGVLPGIGPVPTIAMLLPITYVLPPVAGLIMLAGIYYGAQYGGSTTTI
LVALPGETSAVVTVLDGHQMARNGRAGAALAIAALGSFFAGCVATLLLAAFAPPLAEVSFKFGPAEYFSLMVLGLVGAVV
LASGSLPKAIAMIILGLLLGMVGTDVNSGVARYDFGIPELQDGIDFAIVAMGVFGFAEIMTNLEQKENRVDITDKIGSLY
PNFQEFKEAAPAVVRGTALGSALGILPGGGAVLSSFASYTLEKKISKNPERFGKGHPAGLAGPESANNAAAQTSFIPLLT
LGIPGNAVMALMVGAMTIHNIQPGPQVMTSHPELFWGLIASMWIGNLMLVVLNLPLIGLWVKLLKVPYRILFPAILVFCT
IGVYSLNYNTFDIFMTAAFGVVGYVWAKLKCEGAPLLLGLVLGPMMEENFRRALLLSRGDFSTFVTRPLSATLLAVALFL
VVLVALPAIRKKREETFVEEE
>SEQF2266_AEE68244.1 putative gamma-glutamyltranspeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMKFDWNNPYPSTRIPVFARNVVATSHPLAAQAGLRILALGGNAADAAVASAATLALVEPASNGLGSDCFALVWDGARLH
GLNASGTAPAAWSPGYFQRKHQGAIPLRGWDSVTIPGCVAGWASLHDKLGSLPFADVLAPAIEYAERGFAVPPTVQRRWA
DQVDPLRSLPGFAEHFLPHGRAPEVGEHFVLAGAAATLRRIAASGGRDFYEGETAQKLVAHAQAHEAALTLGDLRDYAPQ
WVEPISQAYRGHALHQLPPNGQGLAALIALGIVEHFDLASRPAEHPDTQHILIEAMKLAFADVHAHVADAAHIRIRVEQL
LDPAYLAERARLIDLRRARVYNAAQAPQGGTVYLACADRNGMMVSFTQSNYMGFGSGIVVPGTGISLQNRGCCFSMDPDH
PNVVGGGKRPFHTGIPAFLTQDGAPLMSFGIMGGNMQPQGHLQALVRMLDYRQQPQAACDAPRWKWNRGLSVDIEAAMPA
QVTDALRARGHIVEVAAPADKDFGSGQFIWRLGDPAVDGYVAASDSRRDGLAAGF
>SEQF2266_AEE68245.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGLPMAGHLARAGHQVTVYNRTAAKAQAWAAEFGGKAAATPREAAAGAQIVFCCVGNDDDLRSVVLGADGAFAGMQAGAV
FVDHTTASADVARELYAAARELNLQFIDAPVSGGQAGAVNGALTIMCGGDSATFEDIKPVAHAFGRAVTLVGPPGAGQLA
KMVNQVCIAGVVQGLSEAIAFGQTAGLDMKLVLDVISKGAAQSWQMENRGATMVDDQFDFGFAVDWMRKDLGLVLAEARN
NGARLPLTALVDQFYGDVQKMGGNRWDTSSLIKRLRD
>SEQF2266_AEE68246.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68247.1 uracil-DNA glycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNDNRLAPAALAAQAAALPAAWRHVLEQPAVARAFASVLGHVEQRLAEGAVVYPAAPFRALDQLAPADVRVVILGQDPY
HGPGQAQGLAFSVPDDCKCPPSLRNIFNEIAVDYPRPTRHDLSAWTRQGVLLLNTSLTVEDGQPGSHAKRGWETVTDALI
AEVARDPSPKVFLLWGAHAQAKQALVPADAGHLVLAANHPSPLSARRPPVPFVGCGHFRQTNAWLQQRGQKPVDWSGEQN
NASRQGEFAL
>SEQF2266_AEE68248.1 putative ATP-dependent RNA helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHMRRYMRQGKAMSFEDLGLAPTILSALSEAGFTEPTSVQAAAIPQAMAGADLMVSSQTGSGKTAAFMLPALNRIAHQPG
NKGVGVQVLVLTPTRELALQVADATASYGRNLPGLRTATVVGGMPYGAQLKALSRRVDVLVATPGRLIDHLKAGRVKLNT
VHTLVLDEADRMLDMGFIEDIETIIERLPKERQTLLFSATLDGSVARLAERMMREPQRIEIAGHRQKHANITQSLLYADD
AAHKMRLLDHVLRDARLDQAIVFTATKRGADDLADRLADQGFAAAALHGDMNQRQRTRTLGQLQRGQLRVLVATDVAARG
IDVQGISHAVNFDLPLQAEDYVHRIGRTGRAGRDGQAFTLATHAERHKVRRIEHYIGQSINAEVIAGLEPQRTPRPSTGG
PRRGGKPMGGKRPGGYGAPREFGDRPQRPYGDRPQRDFGDRPQRDASDRPQRSFGDRPQRDFGDRPQRPYGDRPQRDFGD
RPQRDFGDRPQRPYGDRPQRDFGDRPQRSFGDRPQRDVGDRPQRDFGDRPQRSFGDHPQREGGWHGAPREGRSFDKRPGG
PAKRFAKPAAPRRG
>SEQF2266_AEE68249.1 hypothetical protein BPTD_3022 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRGPARAAALHRAFSLHGKIAVMQRPASSSLPPLDPAASAHSASVARHLRAAIAAAGGWLPFSQWMSAALYAPGLGYYT
AGATKLASPADAQGPALPAGDFVTAPELTPLFAATVARQVAQVLRATDTASVLEFGAGTGALAEGVLRALAGMDCPARYL
IVEVSADLRQRQQSRLAPFGDRVQWLDQLPDAFAGCVLGNEVLDAMPATLFRWSETGTVQERGVTVDADGAFAWQDRDAD
APLAQAVAQRMPPLPGYVSEINLQAEAWVRGMGLWLQRGAALLLDYGFPRSEYYHPQRAGGTLMCHLRHHAHADPFVAPG
LQDITSHVDFTAMADAALAGGLQVLGYLSQARFLVNAGLLDALSQLDPADARAYAQAVAPVQKLLSEAEMGELFKVLAVG
RDMPEPLLGFARGDRRGTL
>SEQF2266_AEE68250.1 tRNA CCA-pyrophosphorylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRTDDPGVAGLRVYIVGGAVRDDLLGLPAGDRDWVVVGATPEDMARRGFIPVGGDFPVFLHPRTKEEYALARTERKSGR
GYKGFTFYTGADVTLEQDLQRRDLTVNAIARTPQGELVDPLDGVADVRARVLRHVGEAFAEDPVRILRLGRFAARFGDFS
IAPETMQLCRRMVEAGEADALVPERVWKEVSRGLMAQAPSRMLDVLARAGALARVMPELHDDTAVRAEIDRAAAAGLPLA
GRYALLCRHTPERDALGRRLRAPVECMDQARLLPLAVDALAASATPAAQLDLIERCDALRKPERFDALLQAAAIVAPVDL
SAWRARVQAVRAIDAGAIARQCAGDPARIKPALRQARLQALGGA
>SEQF2266_AEE68251.1 putative transglycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRGWLPVLALFTAACAPVDAQQRAAASTAPAAVSMQAAPDAEQARRPIAVPPAVLAGLPPAPQTPAQQAVVAAREASQRK
QWSVLGALAPQARTDPLGMYPEYWLLRYQLWSPPGGRRPDAELQRFLAAHAGSYLEDRLRGDWIQAAARAGDFETVRRLG
PVKQGNAQIACAGLDARHMTGQRASAAEAVAAFAPGTACWALYDQLVADGVLGWDEIQPQLRDAIEAGKLSDARKLAQYI
FEPKDQKSYDQMMKNPMKWLVRQDKSPVGRNEKELVTLALARLNKPDVSVADSYLRREWSRHLPRQNLAWVRSQYALVAV
LNQDPRAYEWYREAGAVRMTEYSHAWKVRSALRQPRIDWKWVIEAIEGMPPSQQAEPVWVYWKARGQAALGRAQQASQAY
ASIADQFNFYGQLAAEELGRRITVPPAPAPVTDAEIAEARAHPGLRRAIYLFRLGWRAEAVPEWNFSLRGMSDRQLFAAA
ELARAEGIYDRVVNTSERTAEQFDFSQRFIAPFEGRVSAKARAIDLDPAWVYGLIRQESRFIMDARSHAGASGLMQLMPA
TAKWVAGKIGMSDFRPGSVNDFDVNTELGTQYLNIVLQGLDGSQVLASAGYNAGPGRPRNWRASFGHPVEGAIFAETIPF
NETRLYVKNVMSNAVYYAAMFSGQPQSLKERLGSIVPPQAALATNQR
>SEQF2266_AEE68252.1 5-formyltetrahydrofolate cyclo-ligase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHTQNTAKNTAAALRARLRQSRAELTSSQRSRGALLMRGRLFTWLNLACEQAAAQGRPLSRVAAFWPMEDEPDLLPLLEQ
WVESGIAVCLPAVQERDAPLVFRDWTPDSAMRTGAYGVQEPAAGPAVVPDVVLVPTLGYTLDAARLGYGGGYYDRTLAAW
QAAGASPTTIGIAWSEGLLPDDYQAAAHDIALDAILTPDGWVPGAPLVASGAAAGHRSAGSRFLLR
>SEQF2266_AEE68253.1 putative integral membrane transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAIRQSYERNMQGNHQTATHQPVRASIAAFVGTMIEWYDFYIYATAAALVFGKLFFPSVDGFYGTLAAFGTFAVGFLAR
PLGGAVFGHIGDRIGRKKSLVITLLLMGTVTVLIGLLPTYASIGIWAPILLVALRFIQGIAVGGEWGGAVLMAGEHSPDR
SKRTFFASFAQLGSPAGLILSMLMFKLVTSLDDAAFMDWGWRVPFLFSAALLVVGFAIRLSVNESPDFLAEQAEKARLKD
AAAKQAADKAPIVEVLRGASGLLALAVGANVLGIAGFYFTNTFMLAYTTQYVGLSRGVILDCLLVVSVMQFIITPLSAYI
ATRIGSRRFLLITSFLSIFTPYVMFNMVDQGTLTSLTLGVGLAVVCLGAYYAVIAGYVSDSFPTRIRYTGISMAYQLSGA
IFGGLTPILGTILAEKFQGHWWPLALLFSGISLLSMISVIFLANHRTDAVTAPLRSA
>SEQF2266_AEE68254.1 putative aminohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAFYHPDQKLHHPQTYFSRGKMRTPQEVPARLDALAEAARKLKFDVREPVDAGAGAIGAVHSLDYLRFLREAHARWKQL
PDDWGDEVVSNVFVREPNALRGVLAQAARYLADGSCPVGPHTWQSAYWAAQCAISGAQTLLDGERHAYALCRPPGHHARR
DAAGGFCYLNNAAIAAQMLTQRYKRVAILDTDMHHGQGIQEIFYERSDVLYVSIHGDPENFYPVVAGFENERGAGEGYGY
NVNLPMPHGSPEPVFFDRLQQAQRAIELFQPDALVLSLGFDVFEKDPQAMVAVSANGFERLGQAIGAFKLPTLIVQEGGY
YIEGLEDNAERFFAGLAKA
>SEQF2266_AEE68255.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASPAPKKSAAALAPERLDWNLLRTFMFVVQERGVGRAATALHLSQPAVSQALKRLEQAVGGVLLYRRSGEFRLTNLGE
EIYRLAREMYGMVARVEEAAIQDEDDIAGTLRLLVMSKIQSTAYDDFLAHFHRRYPKVEFSVDVMQSAAILDALAKRVPA
LGLCLCRKAIDTLERRLFLRHRYVVVCGRHHPFFSRRNVRVEDLMDQNFVCFASDQLGDTLSPLTIFRDQQGFTGRIVGT
SPYLEEIRRMVVAGVGLSFLPEHLIRQDVLAGELRRLPPEHNVAEIDVFLAWHRQRKLSAAEQAFLAAFERFLHRTPLEM
RAR
>SEQF2266_AEE68256.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIPPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68257.1 putative methylenetetrahydrofolate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQSTAPAFSLEFFPPRDIAAQERLVRAAKQMLAIQPRYVSVTFGAGGSTRAGTADTVRTLRNLGCDAAPHLSCIGATRD
QLRDILAAYREQGVRRLVALRGDLPSGMGGDAGELRYASDLVAFIRQETGDWFHIEVAAYPEMHPQAESPSADLAHFVNK
VQAGADAAITQYFFNPDAYFDFVERAQAKGVAIPIVPGIMPITNHTQLVRFSEMCGAEIPRWIRLRLAEYGDDKASIRAF
GLDVVSELCQTLLENGAPGVHFYTLNHAEATLGIWKALNA
>SEQF2266_AEE68258.1 hypothetical protein BPTD_3031 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALILVWILNAVALLAVAYLLHGITVASFGSALVAALVLGLLNMLVKPVLVLLTLPITIVTLGLFLIILNALLFWFAGSV
LRGFQVNGFWWAVAGAILYSIIAGLLTKLIP
>SEQF2266_AEE68259.1 S-adenosyl-L-homocysteine hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAVTDKSVADYIVADMALAGWGRRELAIAETEMPGLMAIRDEYAASQPLKGARIAGSLHMTIQTGVLIETLVALGAEVR
WASCNIFSTQDHAAAAIAATGTPVFAIKGETLEEYWQYTHKIFEWPEGRHANMILDDGGDATLLLHLGARAEQDISVLAK
PGSEEERVLFAAIKETLGRDPKWYSTRLAQIKGVTEETTTGVHRLYQMSQKGELAFAAINVNDSVTKSKFDNLYGCRESL
VDGIKRATDVMVAGKIAVVAGYGDVGKGCAQALVALRAQVWVTEIDPICALQAAMEGFKVVTMEEAAAHADIFVTATGNY
HVITRQHMEAMKDQAIVCNIGHFDNEIDVAGLENCQWEEIKPQVDHVIFPDGKRIILLAKGRLVNLGCATGHPSFVMSSS
FANQTIAQIELFTRNEAYTTGQVYVLPKHLDEKVARLHLKKLGVKLSTLSKQQADYIGVPVEGPFKPDHYRY
>SEQF2266_AEE68260.1 putative glycosyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIVLVTDAWHPQVNGVVRTWTTMQGLLQDWGHELIVVSPQGSRTVPAPSEPDLRLCLQPGRQLRRVLGDVVPDALHIAT
EGPLGLAARRMALRRGWRFTTSFHTMFPDYLQARMGIPAGLPWRYLRWFHRPSQRVLVPTPTVRDIVARRGLGNLQVWSR
GVDARRFAPGPRDFLPELPRPLFLCVGRVAREKNLDAFLSLALPGSKVIVGGGPDEARLRRKFPAAHFAGPQADDRLAAY
YNAADVFVFPSLTDTFGLVMLEAMACGTPVAAFRSEAPLAVVQQGATGFLDDDLAQACRAALALDRDEVRAHALTRTWDA
VARDLLAAFTPLVEAPLALPPAAQRI
>SEQF2266_AEE68261.1 hypothetical protein BPTD_3034 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDASFPVAPRVESDETPDRPARVFTATDSPCVAVCSTLFDDICRGCGRTAMEVANWVFMSEEEKREVWVRIQAQGYPRR
NNY
>SEQF2266_AEE68262.1 S-adenosylmethionine synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANNDFLFTSESVSEGHPDKVADQISDAILDAIFTQDPNARVAAETLCNTGLVVLAGEITTTANVDYIQVARDTIRHIGY
DNTEYGIDYKGCAVLVAYDKQSPDIAQGVDRSSEDYLNQGAGDQGLMFGYACDETPDLMPAPIWYAHRLVQRQSELRKDG
RLPWLRPDAKSQVTFRYVDGRPAEVDTVVLSTQHSPEISQASIREAVIEDIIKPSFPEGLITPKTKFLVNPTGRFVIGGP
QGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPSKVDRSAAYAARYVAKNVVAAGLARQCQVQVSYAIGVAEPINITVYTE
GTGVIPDEQIAKLVREHFDLRPKGIVNMLDLLRPIYTKTAAYGHFGRSEPEFSWEATDKAAALKQGA
>SEQF2266_AEE68263.1 lipid A biosynthesis lauroyl acyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVTLLRMAAALPLPFLHAAGRLLGRLAYAFPGKYRDRLRANAAQAGYPQPAFARRAAGEIGAMILEMPKVWFRNEQSLG
KVVSDDYAIVEAARAEGRGILFLTPHLGCFEITARYLARQMPMTVMFRPPRKAALAPVLETARNTSAVNAVPATMQGVRT
LRRGESVGMLPDQAPGVGDGVWAPFFGRMAYTMTLPGKLASQTGVAVILTAGERLPGGRGWRIHYARVPEPLPDGPQEQA
ALINSAMESLIRRFPEQYLWGYNRYKVPRGAPPAPDSARQEPER
>SEQF2266_AEE68264.1 putative acyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQFKTRALTAMLRGFARMRPATRQRAGALVGWLSYRLARSRVRIVRRNLELCFPGQPEAVRERWTREHFRALGQSIVDR
GVLWYGSPEAVREMVTQTGAERINALIAAGRPVILLAPHFVALDAAATRLTMEVPSGATMYTPQSDPAVDAIVRAGRARF
NEVFLVSRKDGVRDLVRHLREPRPVYYLPDMDFGRAGSIFVPFFGVPAATLLATAQLARKWNAAVLPILDFWDPRTGRYH
VEVLPELPDFPGDGSLEDATTRLNRELESWVLRCPSQYYWVHRRFKTRPLGKPKLY
>SEQF2266_AEE68265.1 diaminopimelate epimerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGDNPCMMWNFTKMHGAGNDFVVLDGVRQDIAMTPERARALADRHFGIGADQILLVEPATRADADFRYRIFNADGSEVEH
CGNGARCFVRFVHEQGLSARNPLRAEIVTGVIVLDEGEDEQVTVDMGSTRFDPPSLPFDSTGLSAQTQGQDTVWNLEIDA
PAGLPRSVAISTVAISNPHAVQVVDDVDAAPVGVIGPLVESHPRFARRVNVGFMQVVDRHQIRLRVYERGAGETLACGTG
ACAAVAAGVRRGLLDSPVRVHTRGGMLTVDWNGERLRMTGPAISVFSGQVDIDRLVFTSGLHR
>SEQF2266_AEE68266.1 hypothetical protein BPTD_3039 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAHTPTEPLNAHAVAEFLQHNPDFFIEHADVFATLQIPNPHGSRAISLGERQIQTLRERTRELEWRLSELIRNANSNET
IGDHLSQWCCRMLAEADAQHVPGEIALGLAEQFDLNHVALRLWRLEGLPESGYGEPVSDDVRTFADSLKTPYCGTDTEFE
AVSWLDAKPKSLALVALRPDADAPTFGLLVLGSDDAERFAPDMGTAFLEAIGKLASAALRRLGTPPLAAA
>SEQF2266_AEE68267.1 site-specific tyrosine recombinase XerC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAAPAASPLPQPMADWLRHLQAHRRYSAHTLDGYTRDLRQLAQQAAAAGLPLERVANGHIRHFVARLHAQGLGPRSLAR
ALAAWRGFYQWWAPAAGLPGNPATGVRAPKAPRGLPKALSVEQTQVLLDHAPARLATEPAALRDHAMFELLYSSGLRLAE
LVSLDLRYERTPEYESRSWLNRDDAEVIVVGKGGKRRSVPVGQSALAALDKWLQARPQLAAAGAGAQDAAALFVGARGRR
IAPRVVQLQLARLAQAAGLPAHVHPHVLRHSFASHVLQSAQDLRAVQEMLGHANISTTQVYTRLDFQHLARAYDQAHPRA
GRKTSR
>SEQF2266_AEE68268.1 putative outer membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MICYIVSFNENGTSFYREGNMRFERHPLSAALALALAWQGAHAQASADGTSEAATLAPITVSASPLAGDLDSMTAPAAVL
EGDQLLLRRQGTLGDTLDGLPGVHADTFGGGASRPVIRGQTAPRVKVLSDGSELMDASAISPDHAVTTEPLLADKIEVLR
GPATLLYGGGAIGGVVNVLDRKIPTAVPQQGIEAEAELRGATGTKERAGAIGITAGSGNFAVRVEGLKRRSSDYRVPDWP
DGKLAGSYSESGQGTVGMSWITPRGYVGVAFTHLESKYGLPGHNHEYEGCHPHGSHLHCGGHDDHGHGHDEHEEGEAEHD
HGHEHGAGDVPYVKLRSNRTDLRAEYTDPFAGFEKIRFRGGLTDYRHDEIEGGQLGTRFQNRGYDARLELTHRPLYGWHG
VVGVQTSYSDFRATGEEAFLPRSKTRAHGLFLLEEYRWADWRFELGARQDWQRVSPQSGAPASRTAGTSLSAAAIWDFAP
QYSLALSVSRSQRLPSAQELYADGVHLATNTYEIGDPGLDRETSRNVDLTLRKHSGDTTFSVSAFHNRVKNYIYANTLDR
YEDFRLIEYTQRDAEFTGVEGEVRHRFGKVFSAAVFGDYVRGRLTGGGGNLPRIPAARLGVRADAQWQNWAGGVEYFHVY
RQDDIAAYESSTPGYDMVNATIRYRGKLDRTAYEIYLRGNNLLNKLAFNHASFISTVAPLPGRSVLLGVRLTY
>SEQF2266_AEE68269.1 hypothetical protein BPTD_3042 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVLGCLAALPAAAQGAHPFGVPEATGAPGWLAGWFGQVAMWQAHFYRQLTGAVRAWQAEGGAAWMLIGLSFAYGVFHAL
GPGHGKAVIASYVLANRQTARNGAWLALLSALAQALVAVALVTVLAVALGATAAAMNRATQWLETAAYAVVSLLGAWLVW
QKALRPWWGSKGGHGHGHHAHHHAPGCACGHAHAPSARQAAGPLNARKAWAAILAVGLRPCSGALIVLVFALAQGFFLAG
VVATLAMGLGTGLTVATLVALAAGARDAATRLGARLSTRRAAMLRQAIEALAAVAVLLLGLSLLGGQLAALR
>SEQF2266_AEE68270.1 hypothetical protein BPTD_3043 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MWIDARAVVEFDAAGRIAAVRQVWRFDDMFGAYATQGLSRKPGGGLPPDVLRTMAEDWMKALGEPVSHYFTRVTQGARTL
PFGPPRDAAVSFEDGRLTLAFTLPLAEPAPAGGATAVDIYDPTYFVAYAFDEVGATALRGAPAGCSQAYRPPRPLDWATM
QQLAAIPADPEALPEELFAITKGLTHRIEVTCP
>SEQF2266_AEE68271.1 putative periplasmic solute binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSRILALAAAVLLAPLVAAAQPLQVVASFSILADIAAQVGGPDVAVQSLVGPDGDAHEYEPTPADARKLAAAQVLVVNG
LDFEAWLPRLQKAAGFAGRTVVASEGIEPRRLDDAHEEHGDHDHGHHGEHGHHHHGDLDPHAWQDLANGATYARNIARAF
AEADPAHAQAYRQRADAYVARIEALDQRVRQLFGAIEPARRKVVSSHDAFGYFGQAYGVRFVALAGVSTDAEPSAADMAR
IIEQVRRERVPAVFVENIANPRLAQQLVRETQARLGGTLYSDALAQPGKPAGTYLGMFEWNAQQLAAALRP
>SEQF2266_AEE68272.1 putative ABC transporter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLAEWLAGPFADYGFMRRALAGAVALSAGAAPLGVFLVLRRMSLMGDAMAHAILPGVAAGYLLSGLSLGAMMAGGLLTG
LAVALLAGLVARLTPLREDASFASFYLISLGLGVLLVSLRGSNMDLLHVLFGTVLGLDDAALLLVTAVANATLCILALAY
RLLVAECLDPGFLRAAGGRGAWVHMLFMGLVVLNLVAGFQVLGTLMVVGLMMLPAAAARFWAGSAPGQIALAAVSACAAS
AVGLLVSFHANVPASPAIILAAGAFYLFSVACGPHGGLLVAARRARRARPWQPEGDLP
>SEQF2266_AEE68273.1 putative transport protein ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAMTAPCIALRGAAFGWHGRPAVHGLTGEFSRGSMTAIVGPNGAGKSTLLKGLAGVLRPLAGALECEADLRRRLAWLPQA
SELERGFPITVADMVALGAWGRVGAWRRFDAAETARVHAALRRVGLQELAGRALATLSGGQMQRALFARLLLQDAPLLLL
DEPFSAIDAATTDVLLALLREQHAEGRTVIAVLHDLDLVRRHFPRTLLLAGRQVAWGETGQALGDANLARARGLAMREAA
>SEQF2266_AEE68274.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVMSASRPTRADTVGAQLDLAESLCTQRGRRLTPIRRKVLELLLVHGRSLKAYELLEAMRAEHPGAAPPTVYRALDFLM
DEGLIHRLDAVNAWSACHDAAGEPHDLLVVCTGCGAVAEISDPDMSRQLAERVARTGFALATHETEIRALCPQCQQNRPA
QAHGHTHSHH
>SEQF2266_AEE68275.1 hypothetical protein BPTD_3048 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTARSLDKMVPVTILTGFLGAGKTTLLKRILTEYHGRRVAVIENEFGPESIDNDLLVQDRDEEIIELSNGCVCCTVRGD
LMRTLSDLRARREAGELSFERVIIETTGMANPGPVCQTFFMDDDIAEYYRLDAVVTVVDAKHGMATLDAQEEAQKQVGFA
DRILVSKKDLVNDVDYAALHQRLVRINPRAPITPVHFGEADLKSIIDISGFNLNSILDIDPAFLADEHPDAAHDHHDHDH
GHGHDHDHDHDHEGECGAHCNHHHHHHHAHHDDEIGAFVFRSNKPFDPARLEEFLGGVVQVYGPDLLRYKGILYMKGINR
RMLFQGVHMMMGAEPGKAWTAAEKPSTKMVFIGRKLPQEIFTRGLEQCLVG
>SEQF2266_AEE68276.1 putative dnaK suppressor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATKAATKKSSKSTSDTAIDLPSEQELLAMPEADYMNDRQLAFFKERLKQLEQDILANAGETTEHLRETQFVPDPADRAT
IEEEHALELRTRDRERKLLKKVQQAIARIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD
>SEQF2266_AEE68277.1 ATP-dependent protease peptidase subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEQFHATTIVCVRRGNHVALGGDGQVTLGNIVIKGTVRKIRRLYHDKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRA
AVELTRDWRTDRVLRRLEAMLIVADTEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPEAIVKQSLEI
AGDLCIYTNQNHVIETLGA
>SEQF2266_AEE68278.1 ATP-dependent protease ATP-binding subunit HslU [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSANHMTPGEIVSELDKFIIGQNRAKRAVAVALRNRWRRQQVAEPLRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPF
IKIEATKFTEVGYVGRDVDTIIRDLTEYSIKQTRELEMRRVRSHAEDAAEDRILDALVPPPRGASGEPERGEDNSARQTF
RKRLREGKIDDLEIEIEIAQPMPQMDVMTPPGMEEMAEQLRGMFAGLARDKKKSKKIKVREAFKLIVEEEAAKRVNEDDL
RAAAITNVEQNGIVFLDEIDKIAARQETGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHILFIASGAFHLARPSDLI
PELQGRFPIRVELDSLSAEDFVSILSETDASLIKQYTALLGTEDVKLEFTDDGIRRLAELAFSVNERTENIGARRLYTVM
EKLLEELSFDASANSGEVITIDAAYVDLQLAETAGSQDLARYVL
>SEQF2266_AEE68279.1 hypothetical protein BPTD_3052 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFSRKYSSRMAVATAMAVVSLATPLAFAQQADATGEVRRVDAAAGKVSIKHDAISALDLPAMTLVYQIDPALLAGIKPG
DKVRFTATRKDGRYVVTAISK
>SEQF2266_AEE68280.1 hypothetical protein BPTD_3053 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANRLSVIATRTGDDGSTGLGDGSRVGKDTARIAALGDVDELNSVLGLLRAETLPAEMDADLSTIQHDLFDMGAELCIPG
HIALADEQVAHLDARLAHYNAGLAPLREFILPGGSRAAALCHLGRTVARRAERSVVALARAEVVNAPVRQYLNRLSDLLF
VLARHVNQAQGARDVYWASRHARPAD
>SEQF2266_AEE68281.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE68282.1 putative phospholipase D protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRLLSRIRAARARAAALLALAGCAILLGACTLPPPVDRTASHALDATQARATPLGQGVGELADTHPGLSGFHVLGDAQD
AFAARMLLARAATRTLDVQYYIWRNDMTGTLLLQALHAAAERGVRVRLLLDDNGISGLDDALAALDAHPNAEVRLFNPFP
TRSFKALGYLTDFSRLNRRMHNKSFTVDNQATIIGGRNIGDEYFGATDGVLFADLDVLAVGPVVGDVSAEFDAYWASESA
WPAGPLLPAPGAQTLRALAERAARIEQDPAAGDYMSALRELPFIRELMAGRLPLQWAPARMVSDDPAKGLGKAPPAGLLT
QQLRNILGEPRRTLDLVSPYFVPAEAGTQAFAALARGGAQVRVLTNALEATDVAVVHSGYAKRRKALLQAGVRLYEMRRS
YAGPKPQGRGRFGSSGSSLHAKTFGVDGERVFIGSFNFDPRSANLNTELGFVIESPDMARHIAATFDQDIPAATYEVRLD
DDGSLYWLEQRDGATVRHDSEPGVSLWRRFSVWLFSLLPLEPLL
>SEQF2266_AEE68283.1 molybdenum transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSDFPPGQAGIHARFRVDYPEFSLDVDLRLPGRGVTALFGQSGSGKTTCLRCMAGLAPVSDGYLDINGEVWLDSAARRA
VPTHKRALGYVFQEASLFEHLDVLANLRYGMKRVPPALRRVDLEQATGLLGIGHLLARMPAGLSGGERQRVGIARALLTS
PRLLLMDEPLAALDVQRKREILPYLERLHDELDIPVIYVSHSPDEVARLADHLVLLEQGRAVASGPLDALLTRLDLPMAM
TDDASVVVTGEAAGFDPGYALLTLQLPGGRARLRFVHQAAPAGQRLRVVVHARDVSLALQQPREGSILNVLAVRVLEMAP
AANPAHVMVRLDADGTPLLARITRYSRDRLALAPEMQAWAQIKAVSLLA
>SEQF2266_AEE68284.1 molybdenum transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLTSADWAAIWLTIELASLTTLLLLVIGTPIAWWLARTRSRLKGPVGAIVALPLVLPPTVIGFYLLVAMGPNGYVGQLT
QSLGLGTLPFTFAGLVVGSVFYSMPFVVQPLHNAFEAIGRRPLEAAATLRAGPWDRFVSVALPLARPGFVTAGILGFAHT
VGEFGVVLMIGGNIPGKTRVVSVQIFDHVEALEYAQAHWLAGGMVVFSFIILLLLYSRRQRATAAL
>SEQF2266_AEE68285.1 molybdate-binding periplasmic protein precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIRAIPTLWALAATLLAAPALAGEVQVAVAANFTAPMQAIAKAFEEDTGNRAVASFGATGQFYAQIKNGAPFEVFLAAD
DSTPAKLDAEQETVPGSRFTYATGALALWSARAGYVDDQGAVLKQGDFKHLSIANPKTAPYGLAATQVLAKLGLADKLAP
RIVEGQSISQAYQFVASSNAELGFVALSQIYKDGKLTGGSAWIVPASMHEPIRQDAVILKKGQDNATARAFVEYLKSPRS
AAIIKSFGYQL
>SEQF2266_AEE68286.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMPGNAAPRPVHYRHEQVGDVKIFYREAGDPASPAVLLLHGFAASSYMYRDVIAALADGYRVVAPDLPSFGFTESPARDA
YAYTFDNITRTMDRFTEQLKLDRYALMVHDYGAPVGWRLASAHPDRVTALVSQNGNAYEEGLAQGWDAIRRYWASPTAEN
RAALHGFPTPASIKWQYLEGVPDPSLVAPDGYTLEGLQVSRPGNAEIQLDLLLDYASNVQRYPQFQAYFRDRQPPLLAVW
GRNDPYFLPAGAEAWKRDIPAAEVRFYDTGHFALETHGAEIIPAIRAFLDAKVR
>SEQF2266_AEE68287.1 hypothetical protein BPTD_3060 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATPATHPPHFIANNLALDFINSAFGVGPASHDCLGDDESALAWLEAAGHVPAGLAGPPAGLAELARALREAAARMVRAA
QAGQGGDAALVNQVLEAGRPARKLAWDNGQGGYTLAECPRDHSAASLLEPVAAALADLLAGDALRHVRRCEAHDCTLVFL
DVTKSHRRRWCSMALCGNRMKVAAFRSRRQGAG
>SEQF2266_AEE68288.1 hypothetical protein BPTD_3061 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQFAVTLLALFGVDAQASVAGPQRLLPILSGEPTRTERH
>SEQF2266_AEE68289.1 hypothetical protein BPTD_3062 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTFTSAALLAAALFGFNAFAGSGELDYPPAGAQGGSLTRSQVQHELAIARAAGQLVFGEAQEPAARPAGDAATRAQVQA
ELAQARDASAASEYVETGA
>SEQF2266_AEE68290.1 hypothetical protein BPTD_3063 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDPPAWAALLEACALGAWMRGSSWAYPAANLAHLLGLVLLVGAMLLLDLRLLGLGRRFALADVSAVLTPLAAGGLLLQLA
SGALLFSADAVPLSGNALMQYKAAGIALGVANALLFRALWGARLAGWDSRPPPWGRLQAALSLLLWLAVATLGRLIAYA
>SEQF2266_AEE68291.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDHALDALDRRLLALLRADARLPTATLARQLHVSRGTVQNRMARLERSGIVAGYTVRLRNEDEHGIRAITLIEVRGAATD
AVVAALRRIPEALQVHSTNGRWDLVVELRAADLPAFDRVLRDLRSIDGVANSESNLLLTAHR
>SEQF2266_AEE68292.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68293.1 putative molybdate-binding periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEYPRIPGAALLAAALLAGQASAGEVRVAVATKLAEPIRLVAASFEKDTGNKVHYTVAPTSAFLRQIAEGADFDVLLPNN
KAALSELEALDRVVPGTRHTYAQNVLVLWSPFKDYVDDQGQVLRRNQFQRLSVASPNRVYGRPAAQVLDNLGLAKAVEDK
LVERHDLAQSRQFVTAGGADLGIVTLSQVYANGKLQRGSAWLIPQTLYDPIEQQAVILKPGRDNPVARSFLFYLRGPKAG
SILISHGYRYQLFSESL
>SEQF2266_AEE68294.1 hypothetical protein BPTD_3069 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVISRYLLGAFGRKARLACASAMLGAALLPAGAASADTYPSKPVRLIVPYTPGGATDMVARIVAQHLGARLGQSVIVEN
KPGAGGNIGSQMVASALPDGYTLLFSTTANAINESLYKDLPFDFKQAFEPVTQLVELPNVVITGPDVPVNSIAQVIALAK
KDPKALTYASAGTGTSTHLATELFKTMAGVNILHVPYKGSAPAMTDLRGGRVQLMFDNIPSALPQVQAGAVRALAVTSSR
RSPVLPDVPTVAEAGVPGYEAVAWHGISVPAKTPAPIVERLSGEIAQVLKQPEVVKQLTAIGATPVGSTPAQFQAHIDKE
LAKWQKVVAESGASLN
>SEQF2266_AEE68295.1 putative gamma-glutamyltranspeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVDAFATGQSATSTYTAHRPVIAANRHAVSSGHYLASHAAFQILESGGNAVDAGVAAGLVLGVVHSDQVNIAGVAPMMI
YLAAEDRVITIDGLGSWPAAASCERFEREFGGVVPEGLLRTVIPAAPGAWITALQRYGTRSFAEVAQYAIRFAREGFIMY
PFLADRLQEAEAKYRRWPSNAAIYLPGGRPPRVGERFVQSDLAASLQYMADQETATAGSRVRKLQAARDAFYQGDIASKI
VAFHQENGGLLTAADLAGYAPTIEAPLSTRYGDMDVYACNFWCQGPALLQALNILKSFDLKEMGHNSTRYIHHVAEALKL
TFADREHYYADPRFIDVPAQTLLSDAYARQRAQLVRADRAWPEMPPCGEIAGYETLRAIHGNISREIDPPLDTSYVCVVD
RYGNAFSATPSDVSSDTIVIPGTGLCPSSRGSQSRADASHPASLAPGKRPRLTPNPAMAIQRGKRILPLGSPGGNSQVQA
MLQVLLNITLFGMDPQTAIEAPRFISYSHPDSFAPHAYYPGRLSVEGRIPAQTEQTLAALGHDMQRWPDWL
>SEQF2266_AEE68296.1 hypothetical protein BPTD_3071 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKPVVINAAPSGAFTPKTAVPGQPVAADRSTDVGLAPQEGVTAGIWECQPGLFRRTIMQREFSHFIAGHCYFTPDGGEA
IEIRAGDAVYFPADCHGVWDVRETLRKSYLIID
>SEQF2266_AEE68297.1 hypothetical protein BPTD_3072 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRASTNQTLQLDRRAALPALARSYWFKQAVPQESAPQGLRGRHSVDIAIVGGGFVGLWTALAAKAMQPTARVIVLERDLC
GGGASGRNGGFAMSWWPKISTLLSMAGRDEALRLALASERAIGELERFCLARGVDAHFVRGGWFWTATTEAQRGAWASTL
QACERVGHQPFTAVAPDELARRTGSPVHLEGIFDTATATVQPALLARGLRQAALDDGIEVYEGSAVRTLHTGAPAVLGLD
EAEVRAGTVVLANNVWAAAIPELAPLITPVNSALVVTEPIGERLQELGWRGNEAITDSQLLVGYYRKTRDGRLVFGKGSG
ALSSGGRIGQVFSRDPGTEALTEADFRRTYPELRDVAIAQAWAGPIDRTYDSLPVFGRLRGADHICYGIGWSGNGVAPSW
VGGQILASLALGRKNEWSESALVGRECRKFPPEPIRFMGGTLVRNAVLRKERDEALGRKPAWLDTRLATLAPAGLEDKS
>SEQF2266_AEE68298.1 MerR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHNPSRSNMPEFGITQAAQLTGTNPSTLRLWEQHGLLSPLRSPTGQRIYGEHDLGLISTILRLRKVEGLNISAIKRALAS
TAPAPQDPARPKRSANTQQLGRQFRVARQKHDMSLQEAADATGLPVSFISTFERTGQGAAVASLQRLAACYGTTVTELSA
PPARSADSSAHVVRGGKARQAPSFGAGIQIFQLAETLQSLDCQRWVLQPGAQSDGAYSHEGEEFIHVLHGRFHISVQGLK
TWELVAGDSISFDSRLLHSWSAAGDEPTVLLWVNTPRSF
>SEQF2266_AEE68299.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68300.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68301.1 hypothetical protein BPTD_3078 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQHPFISRVAVRNYKSIGYCDVNLRPLTYLVGHNGAGKSNFMDALHFVCDALSYSLDSALNERGGINEVRRRSGGHPTH
FALRVEFVMQSGQAGRYGFVIGALKNGGYEVQREECVVAGIGKGPFFRIEKGKLRDSSETTFPSVTADRLALVAASGLTA
FRPVFDALTAMGFYNLNPKLMRELQKPQDGRLLRPAGENIASVIGHLEKVAPAQMALIQEYLHSVAPMVHGVERKPIGPM
ETLEFRQDMAGSKHPWRFLAQNMSDGTLRALGVLSALLQGNVDYSPTLIGIEEPETALHPAASAALREALVRASETTQVL
VTSHSPDLLDDHSIDADAVLAVVSEAGETKVAPLDEGSRQVMRDHLFSAGELLRMNQLAPDRASLEQQDKAASGDLFGET
ESV
>SEQF2266_AEE68302.1 putative modification methylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATKKTQKPGKSIEQITHTEAKRKNIPTVEHQSVMQHHEQAPVKVAYPRANRQWLEELCALHDAGKASPEFQQRLNRDLD
PQLIWRGKDQQDWSDLVVNAPPLYIQEKVKPKVLIDDLRRQTEERREATAPQQDLLDLFGDFNGLPEGADRTEFYQHEGH
WQNRMILGDSLQVMASLAEREGLRGKVQCIYFDPPYGIKFNSNFQWSTTSRDVKDGNAGHITREPEQVKAFRDTWRDGIH
SYLTYLRDRLMVARDLLTESGSIFVQIGDENVHRVRALLDEVFGDDNCVSTIVFAKTSSSTGDFIGPTFDTLLWYARNKK
AVKYRKFLLKKAPGQKGGTGYKSVELPDLSRRQLTKDEIESPSSLPVGSKIYFRDNLTSQSVGREKGEGAASWFGVKYQG
RVYKPSQTVRWKTNELGFDRLLKSNRVEASSGDNLGYIRNLDDYPAYELTDIWADTLGQNQFGGEKIYVVQTSISVVQRC
FLMTTDPGDLVLDPTCGSGTTAYVAEQWGRRWITIDTSRVALALARARIMGARYPFYLLADSREGQLKEAEVTRSAPSSQ
STYDNIAHGFVYERVPHITLKSIANNAEIDVIWDKAQTVLEPLREALNKTLGKQWQEWEIPREADAKWSEKAKKLHTDWW
QQRIVRQKEIDASIAAKAEFEYLYDKPYEDKKRVRVAGPFTVESLSPHRVLGVDEEDNLIDHVAETQAEYGQDFASLILA
NLRTAGVQQAHKADKIEFTSLEPWPGDLICAEGRYLENGQVKRAGILVGPEFGTVTRADLVDAAREAGDANFDVLIACAF
NYDAPASEFSKLGRINVLKARMNADLHMAEDLKNTGKGNLFVIFGEPDVDVLDTQGRSIRRYDGKRDVIDVPADGQLVVK
INGVDVFHPSTGEVRSDGADGIACWFLDTDYNEESFFVRHAYFLGANDPYKALKITLKAEIDPDAWATLNSDTSRPFPKP
SNGRFAVKVINHLGDEVMKVFKI
>SEQF2266_AEE68303.1 putative restriction endonuclease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDQFFAQPILNSPYEYPARHWELDTSGQPTQEIVSSRRRADFITPIPKPRKKKGEHEQAGLLFDEGKGLSTAQQAYDHT
AIINAVRQEVDAWRKLPPSQWRVTPETARLLEHWRNHKFAGVRPFFCQVEAAETAIWLTEVAPQLGKNGERFLDHLDKAS
NDANPGLLRLALKLATGAGKTTVMAMLIAWQTVNAVRHPQSKRFTRGFLLVAPGLTIKDRLRVLLPNDADSYYASREIVP
RDMLADMDKAKIVITNYHAFKLRERMELSKGGRRLLQGRTGSELDTLETEGQMLQRVMPELMGLKNILAINDEAHHCYRE
KPASDDDFIDDKGNPLTGDDLKAAKEHVKDENEAARLWISGLEAVNRKLGLQQVIDLSATPFFLAGSGYVEGTLFPWTMS
DFSLMDAIECGIVKLPRVPVADNIPGAEMPIYRELWKHIGKKMPKKGRGKNAQLDPLAIPVELQTALEALYGHYRKTYEA
WKQAGINVPPCFIVVCNNTATSKLVFDYISGFERTNDDGSIMRVPGRLELFRNFDEHGEPLARPNTLLIDSEQLESGEAL
DDNFRGMAADEIGRFKREIIERTGDRRQAENLSDSELLREVMNTVGKQGRLGEQIRCVVSVSMLTEGWDANTVTHILGVR
AFGTQLLCEQVIGRALRRQSYELNEQGLFDVEYADVFGIPFDFTAKPVVVTPPKPRETVTVKALRPERDPLEILFPRVQG
YRVELPEEQLEAEFNNDHHLTLTPDMVGATKTHNAGIIGEAVELDIKHLGDVRQSTLLMELTKHLLFQHWRDQGQDAPIA
LFGQLKRIVRQWLDECLECKGGTYPAQLMYRELADTACQRITKGITAKELEKGRQVKAILDPFNPTGSTAHVRFNTSRPG
SERWETLGVENQPKNQVNWVILDSGWEAEFCRVAESHPKVLAYTKNHNLGLEVPYRFGSANRIYIPDFIVQVGDGGGNND
PLNLIVEIKGYRREDAKEKKSTMDTYWIPGVNHLGTHGRWAFAEFGDVYEMQDDFAKEVEAKFNQMIEAAVPAPGNKEN
>SEQF2266_AEE68304.1 hypothetical protein BPTD_3081 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHSLTPEYLAALCFDGTQVATLRTLGEYQGKQQLYAAQSPEALKGLRQIAVVESTESSNRLEGVVVAPSRLKSLVIRNAT
PKSRSEQEIAGYRDALALIHESAAHMPFSEGVVLQLHTLLYRYMPQAGGRWKATNNDIIERHPDGTSRLRFQPVASHLTP
MAMADLTGRYATALDQHLADPLVLVPLAMLDLLCIHPFPDGNGRMSRLLTLLLLYHFDYAVGRYISLERIFEETKESYYE
TLEASSQGWYQGQHDVKPWLDYFWGALLRAYREFEERVGTIERGRGSKGDRVRAEVLGRSLPFSISEIEEACPGVSRDMV
RLVLRAMKSEGLIESTGKGRGAKWIKQG
>SEQF2266_AEE68305.1 putative integrase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFLPVKPTGGKHWRWKYRLQGKENLFAIGGFPQVSLAEARAAREKARALLKQGIHPAHERRQVKERNLEALEERKHAKES
SFAKVAQAYLAEIKPVFALSSYRTKESRIRKYLSPKFDGMPMSDIGVKQIRPLLEECKAHGAWAAIHVKGDLSAIFEFAV
VRGLVEANPIPSLRGLLRVPFSESKAAMTREQIQKFYQELRSYRGYPETSLCLRLIALTACRPGEAADAEWDEFDFEDAL
WRRPAAKMKARRDHVSPLSAQAIAVLKDLQCITGGGRYLFPHRSGKGFTTPNRLTYAMRDMNLGRGTTPHCWRTTFSTWA
NENGYRPDAIERQLAHVESNKVRATYNKALLLDQRRTLLQDWAEYLKAAEDSGAA
>SEQF2266_AEE68306.1 GTP-dependent nucleic acid-binding protein EngD [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALQCGIVGLPNVGKSTLFNALTRAGIAAENYPFCTIEPNVGVVEVPDPRLDKLAEIVKPERILPATVEFVDIAGLVAGA
SQGEGLGNQFLSHIRETNAIVNVVRCFEDPNVVHVAGKVDPIADIEVIETELALADLQTAEKALHRHSKTARSGDKDAQR
LVTVLEKCIAQLNQAKPVRGLDLSDEEQTLIAQLCFITAKPAMYVGNVSDDGFTDNPLLERLAEFAKSRNAPMVAICAAI
ESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEVRAWTIPIGATAPQAAGVIHTDFERGFIRAQ
TIAYEDFIACKGEQGAKEAGKMRAEGKEYVVKDGDVMNFLFNV
>SEQF2266_AEE68307.1 hypothetical protein BPTD_3084 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDVTTARQGAARATTFRQDLADCWRFLCRPTLRGRLPGRRADSGWASDWRPGVSASRLLAWAAVLWALNLFALGPIAVT
VAGAGGAMHRLDPANIPWLTAILWAPLVEELLFRYGLRRPAQALWFCPMVLPAILWGAQGWTLALVAVAVWLAWLSLRRG
RASLAGWDTSWRRYYSYRFGLVFHLVALTFAAVHLNNFSLSQTPVWLLPLLVLPQWATGLVLGWMRVRRGIGAAIALHAL
FNGGPVLMIWLLMTLMPAGA
>SEQF2266_AEE68308.1 peptidyl-tRNA hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDPIRLIVGLGNPGPDYETTRHNAGFWLADHLADDLRTAFALEKGFFGMLAKARHAGENVVLLKPITYMNRSGQSVGAV
ACFYKLAPEQVLVLHDELDLLPGQVKIKQGGGHAGHNGLKDIQAALGSPNFWRLRIGIGHPRSLGLAQQVADFVLHPPCR
EEQQQIDTVIDRCRAVVPAMLAGDFALATRELHGANGT
>SEQF2266_AEE68309.1 50S ribosomal protein L25/general stress protein Ctc [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFSMKFNATARSVQGSSASRRLRRAGRVPAIVYGGTAAPLNIELDHNEIYHALRKEEFHALILNMVIEGGKTEEVLLRS
VQWHAYKPQVMHVDFQRVEANQALHTKVPLHFINAEVSPAVKLSGAIISHVLTELDITCLPALLPQFIEVNLGDLLGGGS
IHLADIKLPKGVTFNAHGGDTNPLIAAAVVKGGGAADEGDAAAEQPAA
>SEQF2266_AEE68310.1 ribose-phosphate pyrophosphokinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANDSFMIFTGTANTRLAVDVVNHLDMSLGKMTVGRYSDGEVMVEINENVRGKDVFVLQPTCAPTNDNLMEIMVMVDALR
RASAGRITAAIPYFGYARQDRRPRSARVAISAKVVANMLQVAGVDRVLTMDLHADQIQGFFDIPVDNIYAGPILLGDIWR
RNFSNLVVVSPDIGGVVRARALAKQLEADLAIIDKRRPRANVSEVMNIIGEVDGRTCIIMDDMVDTAGTLCKAAQALKDR
GAGAVYAYCTHPVLSGGAIERIETSSLDELVVTDTIPLSEQAQACGKIRQLSCAALLGETILRISNAESVSSLFAD
>SEQF2266_AEE68311.1 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLYDVPAPAKLNLFLHVVGRRADGYHLLQTAFRFIDLADTLHFEARADGAIGRAYELPGVAESDDLVMRAARSLQRATG
TRQGAQIGLHKRIPQGGGLGGGSSDAATTLIALNRLWGTGLSRSQLMQLALPLGADVPVFVFGQSAFAQGVGEDLTAVAL
SPAAYLVVQPDAGVPTAVIFSDPDLTRDCASVTIADFLALPTSCFGRNDLEPVVLRRYPEVSGAVRWLFEHGLRVRMSGS
GACLFAEFPTLPEAVLAQEEITATMRVAGKTTSHTHPGFRLVQASTGLTEHPLRNWIAS
>SEQF2266_AEE68312.1 outer membrane lipoprotein LolB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSACPAPRSPVRWLHAFTLFLLLAVLAGCVSVPKPMAGAGEDVFSRVGRFAITVTESDGKQQAVQGGFAWRDDGGSYLLD
LTNPLGSTEARVEGRPGMAVLTRANGERLAAEHPDALAEDALGSPVPVTGLRDWLRGRLMAGAAPDGLERDAQGRPTAFE
QDGWNARLSRYDAQGPQLLVLQRQEPGRRILVRLVITQP
>SEQF2266_AEE68313.1 hypothetical protein BPTD_3090 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQCKIINCVYEDCAINRTGRVKLSLKHINFGVAALALALAGLQSLPAQAAEVRPRDATGPRLIQPSKQPETEVIRLRPG
QLPYVSLTADIFYRIVGAELAAQRGMYGTAAATLVTLARETGDPRLARRGLEFQLAGGNLPGALDAARAWSSLAPNDIEA
SSTELALAAANGETSGLATALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLSDSARKLPAAHLALADVAQAA
GDYPRAANEAYAALAADPKSEAAAQRVLEYGAKVDATRAQHQARAFINRNPDARKLRLMLAGQIADGGDYDGALAELQAM
SRRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLDVQNQRQMATAPGATDAGAAAADAHVLLSRIAEDQGRYDEAIREL
GRIDDPAMRYSAHMRQATLRARQGRIDGALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVAILVAADKAMPDTVE
IKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNQRLPEALDLITQALELSPEDPFILDSMGWVKFR
MGEPSAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNRALLDTMRRLEVRP
>SEQF2266_AEE68314.1 formamidopyrimidine-DNA glycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPELPEVETTRRGIDTVITGRTLRRLVVREARMRWPIPPALPDLLAGRTVLECGRRGKYLLLRFDHGVQIVHLGMSGSLR
RVPEQEAPRKHDHVDWVFDHAVLRLHDPRRFGAVLWHPDEAGPIAAHPLLARLGIEPFDPRFDGRWLHAYFRGRRVAIKQ
ALLAGDAVVGVGNIYASESLFRAGIDPRTAAQRVSAARCDRLAAAIRATLSDALDSGGSTLRDYVGASGEPGAYFAIHAA
VYERAGLPCRVCGTPIRRLVQGQRATYFCPSCQKR
>SEQF2266_AEE68315.1 putative cyclase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKQFASHADLEDKVVSFEKLSDNAYAYTAEGDPNTGIIVGDDAVMVVDTQATPVMAQDVIRRVREVTDKPIKYILLSHY
HAVRVFGASAYGAQEILASRDTYDLIAERGEQDKASEIGRFPRLFRNVESIPPGLVWPTMTFKGEMTVDLGNLEVKLLQV
GRGHTKGDTIAWLPEQKILFAGDLVEYQSTPYCGDCYFREWPATLDALAGFEAEKMVPGRGPALKSATEVRQGLAGTRAF
LTDLYAAVNRGVADGKDLKTIYREVYDFMKPRYSQWVIFDHCMPFNVSRAYDEATGHYDPRIWTDKRDIEMWQQLEG
>SEQF2266_AEE68316.1 FAD-dependent oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGDIDYQAIEFAYTKCADQQRDTPARHCVIVVGAGPVGLTTALDLARQGLRVVVLDDDYRLSTGSRAICFAKRTLEIWDR
LGVGQRMVDKGVSWNVGKVFFRDQEVWRFDLLPEPGHRRPAFINLQQYYAEGYLHELASAQPGIELRWKSKVVGVAQQAD
GVQVTVDTPDGAYALHADWLVACDGARSPVRKLLDLETHGRVFKDRFLIADVKMAADYPAERWFWFDPPFHPNQSVLLHM
QPDNVWRIDFQLGWNADPVEAVKPENVLPRIRALLGPDADFELEWVSVYTFACERMDHFRHGRVVFAGDSAHRVSPFGAR
GANSGVQDAENLAWKLKLVLAGHAPESLIDSYAAEREYAADENILNSSRSTDFITPKSEVSRTFRNAVLNLARQHPFART
LVNSGRLSVPAAYADSPLNTPDSDPYAGTMRPGAVALDAPVRADAQPGWWLSQLDGGFALALFCGAETPRADMLDALRAL
QQDEVPVQPILVCDAGAAPAAAPAGVRVVEDSEGWLARRYDARPGTCYLIRPDQHIAARFRAFDAQAVRRALARAIGRA
>SEQF2266_AEE68317.1 hypothetical protein BPTD_3094 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLITTPNLAGPDNFYEALIDTHRDLSDEQSRELNAALILLLANHIGDMAVLRAALEHARQSVVAPPAP
>SEQF2266_AEE68318.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAELRNIDLNLLVIFQRLLQERSISAVARQLDLSQPAVSNALRRLRAACGDDLFVRTAQGMQPTPHAERLGGPVGEALAL
LSHALDATQDFEPRASTRRFRIAMSDVGEIHFMPRLMDQCARHAPGVRIDSLRLQGADLQREMDAGRVDLAIGAFADLGG
AVMQRMLFRQGYATLYRQGHPSAHEGMSLKAFRAAHHLVVSHATPYGQVNQSLERAGVTLGEHFSVPHFAAVPYIVSTTD
LLATVPQKLAASAAPHFGLGLLTPPLRMPTLQTNLYWHRRFQRDSGSQWLRALIVQAFADAP
>SEQF2266_AEE68319.1 homogentisate 1,2-dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLHYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQRWL
SDFGRQPVTPNQLRWSPLPMPDAPTDFIDGMHTWGGNGGPEEQSGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRL
ATELGLIDIEPYEIAVVPRGVRLRVELLDDVARGYVLENFGTAMRLPELGPIGSNCLANARDFQIPVAWYEDVEGDFELI
AKFTGGFWRAPITHSPLNVVAWHGTHAPYKYDLRNFNTVGSISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAME
NTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQAHYIRDTMAFMFETRRVI
RPTAQALASPQRQDDYYQCWQGLQKHFDPEQA
>SEQF2266_AEE68320.1 fumarylacetoacetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKLNETHDPALQSWVASANAADTSFPIQNLPFAAFRRKGTQDPFRPGVAIGDAIVDLAALAAQAPFDGAAAAALAACQG
ERLNALMALDQAHWSALRLALSRALRAGSALQARIEPLLVAQAEAEYTTPAHIGDYTDFYISVHHATAVGKQFRPDNPLL
PNYKWVPIGYHGRASSIGVDQRFARPVGQTRPAAEGEAPQFGPCQRLDYELELGIFVGRGNAQGERIALGEAESHVFGLC
ILNDWSARDIQAWEYQPLGPFLAKNFASTISPWIVTLEALEPFRAAWTRDAADPQPLPYLESAENRAHGAFDVQMEVLIS
TEQSRAKHAQPALLSRSNFRDAYWNIAQLVAHHTVNGCNLQPGDMMGTGTLSGPQASEAGSLLELTNGGKQPLDLPWGEQ
RTFLQDGDQIIMRAECSKPGYPRIGFGDCVGTVLAAK
>SEQF2266_AEE68321.1 putative sulfatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVFFCNEADEALALPPPTRNPVRRLTIRFAIAILVLLTLSRLGLSAWQWERVQAAGGLGPIMLGGLRMDLRLLALVLAL
PAVLAPWFGHRAWAASATAWWYRVWWMLFVLLEVSTPQFIAEYDTRPNRLYFEYLVHPREVASMLWEGYKGVLLASFVVL
VLAAWLAVRLFPTGRQDGFMKWWKRPFVTLAVLAVVVLAARGTLQHRPINASMVAFSSDAMVNTLPLNSLGNVLDAAYRM
QDERSSAALYPPMKTEEMNRIVRAAAGLEDPPLDARYPSLHKQTATVRRDKPLNLVIILQESLGAQYVGSLGGRDLTPQL
DRLAKDGWMFNRAYATGTRSVRGLEAVTAGFLPTVAEAVLKLPRSQTGFFTLADLLGRHGFHSRFIYGGEAHFDNMRGFF
LGNGFNEVIDRQSFVDPVFVGSWGASDEDMFNQLDRLLRADDGKSTFTLAFSVSNHSPWEYPAGRIEPVGDPASVDNTVR
YADWAMGQFFDKARKAPYWDNTVFLVIADHDSRVYGANLVPVRHFQIPALILGGTVPPRSDDRIVSQIDMGPTLLSLIGL
DNVNPMLGSDLTQRDPNRAIMQYGDNFGYLKGDSLLVIEPGKDPREYRYTAAASMRDEKYVPIDLDPALRDEALAFALWP
SWAYREERYKLPK
>SEQF2266_AEE68322.1 putative two-component system sensor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSARPVSGNGSGSLTQRVVWALTGSVALFVTALVLLSYLTFDKMEDDLVNDILSTETDRLIQHVAADDHFRPDRGARELG
GAMRAWLVRAGAAQSDLPPPLHGLGVGMHLLEPGAETWHVMVADVEDARIYVLYDATDNEARVHDFGLFVLGVGAICIVA
AYGISRRVAGVAVGPLVELTRRLANWAPGAPDLAVTRDDEAGRLIEAFNRVQNQVDRSIAREREFSVNVSHEVRTPLAAI
RSDSEMMLLAAGLDEGQRTRLVRIVANVDNVSTALESARAMARDEPRAPERVDLAACMDDAWRGLEVNAEAAGLAFANRI
PAGSAHVLDRYAMLTVLRNLVRNAIEHAAPATLTAALRPDGALELRDDGRGIAAEELPFVFQRFYSGRLRDSADNGSNEL
PRGLGLAIAKRVCDMQGWQLSVDSERDGPARGTRFVLRFT
>SEQF2266_AEE68323.1 putative two-component system response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAAPANRHFRVLIVEDDLTIAANLYDYLQVRGFVPDAAYDGRSALALLDEHPFDAMVLDVGLPGMDGHAVLHALRVERR
AALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALIQRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVH
LTRKCGMIVEVLLRDPGRVVSREQLENALWGDDPPSSDALRSQVHLLRRALADAGFDGIETVHGTGWRLALPAGGA
>SEQF2266_AEE68324.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLPRELQALLGPSHVLTGDDAEPFLQDWRRRYRGRALAVARPGSAEEVAAVVRLCQAHGAPLVPQGGNTGLCGGATPDD
SGSAVVLSTTRLNRVRAIDTDNDTITVEAGCVLQAVQQAAEQAGRLFPLSLAAEGSCTIGGNLATNAGGTQVLRYGNARE
LTLGLEVVTAEGEIWNGLRGLRKDNTGYDLRDLYVGSEGTLGIITAATLKLFPLPVATCTALLALDSIDAAVEVLSRARG
GFGASLTGFELMAADCLQAVTRLFPQQRLPFDGASADSPWFALLELSDSESEAHARARFEAVVGAAIEDGLVADAAIAEN
LAQSQALWHLRESIPLAEAELGKSIKHDVSIPISAIAAFVHQTNGLLQGRFPGVRNVIFGHLGDGNLHYNVARGPGQTEA
DLLGLQSQVYDVVHDSVQAFAGSISAEHGVGQLKRDELPRYKSAVELALMKRLKVALDPRGLLNPGKVLQA
>SEQF2266_AEE68325.1 hypothetical protein BPTD_3102 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAPGRVDLTAGGERRLDIPVHAGIDGSVEAGRAWERCVWRAARVLIAECPAPRLSARLEATLRGVAVRIARDRGWRGIGT
VVFSLDVGTGMFRMIEARLCGLQQGGPAADAASGGHALEVRISACADSGRRGAHLLTYGATRGEALRRAYQALAKLPGLA
QADRAFLMDRIASPAFCSGLTGSQLDRIAS
>SEQF2266_AEE68326.1 phosphoglucomutase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAHPFPASVYKAYDIRGSVPDQLDPVFARALGRALAASARAQGIGALVVGRDGRLSSPDLAGALQEGIMEGGVDTLDIGQ
VPTPLVYFAAHIQGTGSGVAVTGSHNPPQYNGFKMMMGGQALYGPAVQALRPAMLAPAAAPGTWGERRQLDVVPAYIERI
VSDVKLARPMKIAVDCGNGVAGALAPQLFRALGCEVDELYCEVDGTFPNHHPDPAEPRNLQDLIAHVTSTDCELGLAFDG
DGDRLGVVTKSGQIIWPDRQLILFARDVLARCPGATIIYDVKCSQHVGVAIEQSGGVPLMWQTGHSLVKAKLAETGAPLA
GEMSGHIFFKERWYGFDDGLYTGARLLEIVSRETDASRPLEALPQALSTPELKLEMAEGEPHALIAALQQQGEFASASRL
VTIDGVRAEYPDGFGLARASNTTPVVVLRFEAETEPGLARIQQEFRQQLLRLAPQAKLPF
>SEQF2266_AEE68327.1 glucose-6-phosphate isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTPLPSSSAWLAFADAARHSSRRGARLRVIEAAGLRVDLTAQAHSDDLDSAAEDLLAQQDFDNARAQLFDGGPANWTEH
RPAWHTALRAARPPTPVAGAILGERDRLRRFVQDADMRGAYRHVLHLGIGGSDWGPRMVTRALRHNGLKREVRFASNVDS
HAVADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADPVRQVVAITANVDAALDFGISPQHIFRFWDWVG
GRYSLWSAIGLPVALALGCDALDELLAGAAAMDQHFLHTPMRRNAPLQMALAGVANRSVLGYGSLAITPYDSRLTHLVPW
AQQLEMESLGKVAGHDGSPAGVPTGPVVWGMTGTDCQHTFFQWLHQDTAGAPVDFIVCEQADHPYDHFHKLLIANCLAQR
AALLRGKPFDEALKEARLVESDPQQAEILAHHRVHPGGRPSTLIMLPRLSAHALGALLAMYEHKVFAQGVLWGINPFDQW
GVEYGKALARNIIRELENPSSEVNQQDPSTRYWIDALRKQP
>SEQF2266_AEE68328.1 putative glycosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSPRRLLFVVNNPAFFLSHRLPLAEAARADGYEVHVATMDGPSVPDIVARGFAHHVIPMTRSGKQPLQELRSVWALVRL
FRRLRPGLVHLVTIKPVLYGGIAARLAGVPAMVAAISGLGFVFVAGGLKARLLRAAVGRLYRLALGHRNSRIVFQNTADR
DVLARLGAVRAEQVVMIRGSGVDLGQYRVVPEPAAPVTALMAARLLRDKGVREFVEAARLLRQRGLSVRMQLAGGVDPGN
PASITPEQAAQWQDEGCVEVLGERKDIAALYGAAHMAVLPSYREGLPKSLLEAAACGRAVVTTDVPGCRDAIDPDVTGLL
VPPRDAPALADAIARLAEDASLRQRMGAAGRALAEREFGIEDVCRRHLAIYRALAR
>SEQF2266_AEE68329.1 putative glycosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRILRVMHVITGLGQGGAESVLFRLATWPDQRVRHSVISLTDEGVYGTRLRAAGVPVHALGMPRGRVTLGGLLALRALL
RRERPDAVQTWMYHADLIGGVAARLAGIRAVAWGIRNSGEHLDRSSRSARLVLKLCARLSARLPAAIVCAAQDAATRHRQ
HGYDGARMVVIPNGYDLSRYAPDAQARERMRSLWGVAPGTPLVGCVARWDPLKDHANLLAALGGLVREGRDRGLQCALVG
RGMSPGNAGLAALIDAEGLRGRVLLAGPSDDVPAVMNALDLHVLSSCAEGFPNVVAEAMACGTPCVATDVGDAAYIVGDT
GGVAPAQQPAALAAAIEAALAGIAARGRDAAGAAGRQRVLAEFDLRRMVESYEAVWRRISGERA
>SEQF2266_AEE68330.1 putative glycosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKILLLVSSMHAGGAERVAATLANGWAARGDQITLMPTYSSKGTCFYPLSDDVELLWLADRAGTRSGGVVAAWQRLRALR
AVVRERAPDVVVSFLTNVNVAAILATRGLKTPLIVCERTNPVVDTSIGRIWRVLRRVLYPLADMVTVQADATVEPFARQV
PGLKQLCVIPNPLPPELFDATPAAGSGAAPAARKRLMAMGRMVPDKRFDLLIDAYAGLADEFPDWDLWIWGEGPRRDDLQ
AQVAARGLATRIHMPGRTAAPWDELAKADAFVLSSAVEGFPNVLLEAMSLGLPCAAFDCPSGPAEMTRGGRDALLVPAGQ
RDALRDALGRLMRDPELRRDLGRRAAQSVRQRYALPAVLAQWDALFERVRGGA
>SEQF2266_AEE68331.1 putative asparagine synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCGIVGIWGPLRDKANVLAESCRRIRHRGPDSNGYWEDAEADLALAHVRLAILDLTEAGHQPMVSACGRYVIVLNGEIYN
HMELRERLQQDGLAPAWRGHSDTETVLACFAGWGIEQTLQAAVGMFAIVLWDRAERKLALMRDRMGEKPLYYGYSQANLL
FGSELKAFMPVPGFGRELDRNALASFMRHNYIPAPQSIYAGIRKLPPGAWVEIDAAQMRRGELPEPQVYWSARRAADQGL
GDRRRFESDAQAIDALEQVVSQAVRGQMLSDVSLGAFLSGGIDSSTVVALMQAQSAQPVRTFAIGFHEKGYNEAEHAKAV
AAHLGTEHTELYVTAEDGLAVVPSLADMYDEPFADSSQIPTSLVTRMARQHVTVALSGDGGDELFGGYSRYFRVDNWWRK
CAAMPGPLRHLAGAALRGSAALPGAGAWRGKVGKLGELLGADTRGEFYRLFVSYWADPGRVVIGGTEPLSPFEQPMEGST
FDAMMKLDTVTYLPDDILVKVDRAAMAVSLETRVPLIDHRVYEFAWQLPFEYKVRGGTGKWLLRQLLYRHVPQAMVDRPK
RGFAVPLAAWLRGPLRDWAEALLDPARLRQEGWFEPEPILRKWREHLSGHRNWDSHLWGVLMMQAWLDRYRAGAGDEAGR
R
>SEQF2266_AEE68332.1 putative glycosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGPAERPLRVLIFIHSLHGGGAERVAADLSAHWARDGRAVMLVTQTDASGDVYPLHPQVLRRTLDTAGEGGGWRGVLAN
LRRIRALRALIKDFQPDIVLGMMTTASVLAVLAARGLGCRVVATEHTHPPSQALSGMWLRLRRWTYPRAARVVALTRGTA
DWLRTHVPGSRLAVIPNPVHWPLPRTEPVLVPPADGRPRLLAVGRLHPDKGFDVLIDAYARIAPRYPDWDLVILGEGEEC
AALQRRVDEAGLAQRVALPGRAGNVGDWYACAALYVLTSRFEGLSNTLLESMASGLMPVSFDCDTGPREIVRPGVDGVLV
RPAGDAGAMAQALAAAIDDEPGRRAMAARAIDVRERFSARHVLDLWQQLFDDALSQAK
>SEQF2266_AEE68333.1 hypothetical protein BPTD_3110 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAIRRKLDAIHPDHQRIFKGAFRVAVFLILGKAAGAIKEMAVAYRYGVSDAVDAYQFTMTMATWLPVTIVGALSVVLIP
VLVRLRRAGGHERDRFVRELQGWSLAAGLTLALLTWMAWPHVLDWLGGGLSGTVDGMTHELLLAFAPVAALLLMAGISAA
RLRSHERHVNTLLDSVPAVTTLAWVMLAASADSVGPLLWGTLVGYAIQAAWLAWLAARADGGFWGWPAFTLRSPHWPELA
AAAGVMLVGQVAMSFVGPLDQYAAANLGSNANATLGYASRLLSLVLGIGAVSVGRAALPVLADVQSRGDGARARAMALKW
SALMVGAGAAAVVVGWLLAPWGVALLFERGAFTAENTQAVAQVLRWGLLQLPFYFGVLILVQLLASQNRYRIMALIAVAN
FLLKAVLNTVLAPRMGTAGIMLATSLMYLLSFACYTVVALRPAPGADGGDDDREKR
>SEQF2266_AEE68334.1 UDP-N-acetylglucosamine C4 epimerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNRFETTCAQLRAQPQKWLVTGCAGFIGSNLLETLLGLDQAVVGLDNFATGHQHNLDEVRAAVTPEQWARFTFIEGDIR
DLAACQRAVQGVDRVLHQAALGSVPRSLKDPITTNEVNIGGFLNMLVAARDAQVQAFVYAASSSTYGDHPDLPKVEERIG
NPLSPYAVTKYVNELYADVFARSYGFSSVGLRYFNVFGKRQDPDGAYAAVIPKWTAAMIKGEDVVINGDGQTSRDFCFVE
NAVQANLLAAMAAPEGANQVYNVAYNARTTLTELFEHLRRTLAGQGVSYEKAPVYAEFRAGDVRHSQADIGKAGKLLGYE
PAYDILRGLEAAMPWYTQFLR
>SEQF2266_AEE68335.1 polysaccharide biosynthesis protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIDDVKLAVVGLGYVGLPLAVEFGKKRPVIGFDINERRIAALKAGHDHTLEVEDDELARAAQLSYTAEREELGKANVFI
VTVPTPIDEYKQPDLTPLVKASETIGAVLKRGDIVIYESTVYPGATEEDCVPVLERVSGLKFNQDFYAGYSPERINPGDK
AHRVNTIKKVTSGSTPEVAELVDQLYNEIITAGTHKASSIRVAEAAKVIENTQRDVNIALINELALIFNKMGIDTEAVLQ
AAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKAQAIGYHPEIILAGRRLNDSMGGYVVSQLVKAMAKRRIHVEGARVLLMG
LTFKENCPDLRNTRVVDIVRELGEYHVDVDVYDPWVDPAEAEHEYGITPVAKPAAGAYDAIILAVSHHQFVEMGAEAIRK
FGKAEHILYDLKYVLAPEQADLRL
>SEQF2266_AEE68336.1 glycosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTWLYICVVAFMVGGLIVASERWHGAFTGDSDLNKPQASHTRATPRVGGLAVLAGSLAGLLVLGPSNMTLTWLWPALFVA
ALPVFVAGLLEDITKDIGASKRLLAAFASAAIAWWLLGGVSRVGIAPVDWVLSFWPVSLIFTMFAVGGCTHALNIVDGMN
GLAGMIATLMAVSISLVALQVGDMPIFMIAAALASATLGFLVWNFPFGRVFLGDGGAYFLGFMLAELAVLLVVRNPSVSP
FYALAVLFYPVFETGFSIWRRRFKRGVPVDQPDALHLHQLVFRRLVRVTFSRGRRHAVPALCNALASPYMWVLALIGLVP
ATIWWDNAWFLCASLVVFAAVYTWLYMRLVSWRRPGWLLLPSVIRTH
>SEQF2266_AEE68337.1 hypothetical protein BPTD_3114 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSSSASALGRRAGPLDGLIGEIDRALRVLSGAATAARPYPAQAPEAPDALSEREKRHAAGLMRVNHVGEVCAQALYRG
QAAACREPAARALLREAAAEEVDHLAWCHERLRELGSRPSLLNPFWYTGSFALGVLASYAGVPRNLGFMAETERQVEAHL
DGHLRTLPVQDQRSRDIVQKMKEDEAQHRASAERAGGVPLPAPVRGAMRAMSKVMTSTAYWL
>SEQF2266_AEE68338.1 hypothetical protein BPTD_3115 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQMECTIDWGGPAGMLFTASTGSGHVAVMDGAVDGGGHDLAPRPMEMLLAGTGGCTAYDVVLILKRGRHAVTGCSVKLQA
ERADADPKVFTRIHFAFTVTGSKLPRAAVERAVQLSHEKYCSASAMLEKTAELSFSVDIVDTQAA
>SEQF2266_AEE68339.1 thymidylate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQYLDLVQSILDQGAWQENRTGVRTLSLPGAALRFDLQQGFPAVTTKKLAFKSAIGEMVGFLRATRSAAQFRALGCKVW
DQNANENEQWLANPYREGPDDLGPVYGVQWRHWPAYKLLPSSAGGQVADALARGYRQVAEVDENGAPHVLLYKAVDQLRQ
CLDTIRQSPGDRRILFHGWNWAQIEEMALPPCHLLYQFLPNAGTREISLCLYIRSNDVGLGTPFNLTEGAALLHLVGRLT
GYKPRWFSYFIGDAHVYENHLPMLREQLAREPYPAPQLVLSDRIPDFAVTGKYEPQWLEQVEPGDFTLSGYQHHAPLTAP
MAV
>SEQF2266_AEE68340.1 dihydrofolate reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPMSATPLLSLVVAYSTNRVIGRDNALPWKLPGDLAHFKRTTLGHPIIMGRNTWESLGRPLPGRTNIVITRNPAYDAAGA
VVVGSLAAAIQACGDAAVACVIGGAQIYAQALPLAQRVVATEVHAEIEGDAFFPPLPAGQWRETQRAAQPAENGLRYDFV
EYERVAG
>SEQF2266_AEE68341.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDFQPVRGRAQAPSLVEQVVQAFSSAIARQVLRPGMPVPSVREFARQHGISTFTVASAYSRLAAQGWLVARPGSGYRAA
SPQAAAPRAGTPGQWSPPRLNDSWLLSDIYADHSIPIKSGCGWLPPEWLHEEGLHQALRHLGRVPALRIAGYGHPYGYAP
LRETIAAGLGAAGMPAEADQVLLTQGVTHGLDLVMRTLLRPGDTVLVEQPCYANLLQLLRLVGMRVVSVPRGVDGIDCEA
LDAAALAHRPRALFVNTVLQNPSGASLGMANAFRVLQAAERHGLWIVEDDISRELMPAIAPLLAALDGAQRVVYLSGYSK
AISPSVRVGYIVAHRDLVRDLARTKMAAGLTSPEIMERVVHQVIREGRYRAHVLRTRERLGQAHAQVVQAMDEHGLQLCA
RPQAGLFLWARPGGAWRERGANALAELALKDGIWLAPGSYFDAADADIPWLRFNVAYSDAAALWRFLRGAGASAQPATRS
YSTKS
>SEQF2266_AEE68342.1 beta alanine--pyruvate transaminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPASPPDLSHLWMPFTANRQFKSQPRLLARAEGMYYTSTDGRQILDGTAGLWCVNAGHCRPEIVQAIASQAGEMDYAP
GFQLGHPLAFEAATAVASFMPAGIDRVFFTNSGSESVDTALKIALAYHRARGDAQRTRLVGRERGYHGVGFGGISVGGIS
ANLKTFSGALLPAVDHLPHTHSLKHNAFSKGQPAWGEHLADELERIVALHDASTIAAVIVEPMAGSTGVLVPPKGYLQRL
REITARHGILLIFDEVITAYGRLGSPTAAEHFGVTPDIITMAKGVSNAAVPAGAVAVKREVHDAIVNGVQGGIEFFHGYT
YSAHPLAAAAILATLGIYRRDDLFGRARDLSPAFEKAAHALQGAPHVIDVRNIGLVAGIELASRPDAPGARAAEAFRKCF
DSGLMVRYTGDILAVSPPLIIDEAQIGELFEGIGKVLKEIA
>SEQF2266_AEE68343.1 putative extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKSVRIAALAGAMLLAAQGAGAETVIKAVMHSPLRLTDPHATTAYITTWHGYMIYDTLLATDADNKIQPQMLEKWEVSP
DGKTYTMTLRPGQKWHDGKPVTAEDCVASIKRWAGGDGMGRTLMKFTDRIEAVDDQTLRIVMKEPTDLALRALSKPTGTA
AFMMPKRIADIPIGQPITDMTGSGPFKVAEFKPGVKTVYVKNADYVPRQEPASGLAGGKAVHIDRVEWNVMPDALTTANA
LLGGKIDFVEQFPYDLLPMVEGNPELKEEALSPVGYFTMYRFNFKYPPFDNKKIRQAAMYAIGQEDVMKALVGNPKYWQT
CASLWGCGTPFETDIGKDMVVPSNIEKARALLKEAGYDNTPILVMHATDVGTLSAQPVVMAQALRKAGFNVNLAAMDWQS
VATRRASKAAPAQGGWNIHNTNWYATDIMDPVRSAPAAANGDNAWFGWPDIPEIEALRTRFALSSDPAEQKKLAEEAQRI
GIDEGLYVPLGQMSVPTVYTTKLSGLVHAPVFAFWNVKKAP
>SEQF2266_AEE68344.1 putative ABC transporter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLVFIARRLLATIPVLIMVAVVVFAILRASPGDPAIIMAGDAATPERIAQIRQVMGLDQPLVKQFFIWTGRLVRGDMGTS
LMSGVPVTQLIGQRLEPSLSLAMITLVFTLAVAIPLGILAAWRRGRLLDRAVMGFSVLGFSVPVFVTSYVLIWAFAIKLG
WFNVQGYTPLAQGFWPYLHRLVLPSLALSTVYVALIARITRTSIIEVMGEDFIRTARAKGLGETGVLLGHALRNAAVPIA
TVIGVGVALLISGVVVTESVFNIPGLGRLVVEAVMARDYPVIQGLTLFFAFVYVFINLVVDCAYTVFDPRIRY
>SEQF2266_AEE68345.1 putative peptide ABC transporter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTHSDAVADGALPENGPPQAGAWRRVRREFSGAPVLAALAVLALVVGAALLAPWLGTVDPTAIDPGARLKPPFGDYLFG
TDAFGRDIWSRVVYGARVSLVAGLGAALVSVTLGLVIGVIAGWFRTLDGLIIRTMDAVMAIPGILLAIALVSVTGASLAT
VLVAITIPEIPRVVRLVRGQILSVRGEPYVEAALALGTPLPLLLWRHLVPSTVAPLTVQGTYVFASAMLTEAILSFLGAG
IPPEIASWGNIMSEGRMYFRMLPGLILFPGLFLSLTVLSVNILGDALDPKMTRRT
>SEQF2266_AEE68346.1 hypothetical protein BPTD_3125 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRWLLAMIKHETNTFSPVPTPLERFFRGSPEILAGERAIRAYENTDSGLGGYIEVARREGAEIVVPVAAESWPSAPTDRA
TYERLCGLVLDEARRGGFDVILLDLHGAMVAEGVEDAEGDLLRRLRDIAPAIPVGVTLDMHANIYDDIVRHATVISGFHT
YPHVDIRAAGLRAANAIARTLRGEIKPVMSWANKPMLPHIMRQGTHAEPNKSLQARCKALESEGVIAASVFVGFPHADIR
EAGLSAVVCTDANLAQAEQYRDELLETAWRGRADWVFHAEPLAPTIARAKAIENGPVVLLDHYDNTGSGGTMDTTAVLAE
ILDQGLENVAFYAICDPQAAQQAAAAGVGATVTLPLGGKVAMPALRQASPLLHLTARVKLLFDGVYLNRGPMYRGVRNDT
GLTVVLDTGKVEIVVVSRHQEPFDINCLLSAGIDPLQKRYVALKSRVHWRAGFADMAAHVIECTGVGVTTSDYGQVEFRH
VRRPVYPLDAI
>SEQF2266_AEE68347.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF2266_AEE68348.1 urease accessory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHDISSLTTRTKALPPLRVGVGGPVGSGKTTLLEMVCKAMYPQFDLIAITNDIYTKEDQRLLTLSGALPPERILGVETGG
CPHTAIREDASINLIAIDQMLEQFPDADIVFVESGGDNLAATFSPELSDLTLYIIDVASGEKIPRKGGPGITKSDLFIIN
KTDLAPYVGADLAVMEADTRRMRGDKPFVMCNLKTGDGLDQVIAFLKTEGLFRG
>SEQF2266_AEE68349.1 urease subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRISRSAYAEIYGPTVVGGVGDRVRLADTLLLAEVEKDHTIFGEEVKFGGGKVIRDGMGQSQRLATDCVDTVITNALII
DAVTGIVKADIGIKDGLISGIGKAGNPDTQPGVTIIIGASTEVVAGEGLIVTAGAIDTHIHFICPQQIEEALATGTTTMI
GGGTGPATGSLATTSTSGPWHMAAMLQALDAFPVNVGLFGKGSSSSHGALLEQVRAGAMGLKIHEDWASTPASIDTCLNV
AEETDIQVAIHSDTLNESGFVEDTFAAFKGRTIHSFHTEGAGGGHAPDIIRAAGMPNVLPASTNPTMPFTRNTIDEHLDM
VMVCHHLDPSIAEDLAFAESRIRRETIAAEDILHDLGAFSIMSSDSQAMGRVGEIVLRTWQTAHKMKLQRGPLQGDSERS
DNERIKRYIAKYTINPAVAHGIAHLVGSVEVGKLADLVLWKPAFFGVKVNMVLKSGMAVSASIGDMGASISTPQPVQIRP
MWGSHGKALRTSVAFVSQVSLSNPAVSELGLNKRLEAVRGCRGVTKHDMVRNNWLPAISVDPQTYQVYADGQLLRCEALA
ELPMAQRYFLF
>SEQF2266_AEE68350.1 urease subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIPGEILTEPGQIELNVGRPTLTIAVVNEDDRPIQVGSHYHFAEANNALVFDRELATGYRLNIPAGNAVRFEPGMRRTVE
LVAVGGERRIFGFQGKVMGALK
>SEQF2266_AEE68351.1 urease accessory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKRAMLGSGAAALMLFSGAALAHPGHLGHELPGSMFAAGFWHPLTGFDHLLAMLAVGMWSALTHHTARQAVWLPVMFLA
LLFAGAMMGMAGVRLPAVEPVIMVSLLVLGLLVASRKAVQGWAGFALVGGFALFHGLAHGMELPGSEGALGFVAGFMLAT
LGLHLAGLFAGFRLKHWNLWLSRALGVGIAGYGALLFVGARV
>SEQF2266_AEE68352.1 urease subunit gamma [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MELTPREKDKLLIFTAALLAERRRARGLKLNYPETVALITAALMEGARDGKTVAELMSEGTRILGRDEIMEGVPEMISNI
QVEVTFPDGTKLITVHNPVV
>SEQF2266_AEE68353.1 urease accessory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSETLDQWRAGLTLGFAPGHAGRTVLRERAHYGPMLVQRALYPEGPQVCHVAILHPPSGIAGGDALEIRVDVAGGARAAL
TTPGATRWYKSNGRQASQDVHLRVAAGGRLDWLPLESIFFEEADALARNRIQLESGAAAIGWDLIQLGRVNQSGHWSQGR
LHTATELYVDGRLLWVDQGLVGAQDDVRRQVSGLAGFPVHAALWSFGPRLDAEQNEELAGLMPWSDTLRGAATTMPYDAT
QSLCLVRCLGVHMEDVRAVMTDAWAYLRPRVLDTPAVVPRLWAT
>SEQF2266_AEE68354.1 heavy metal dependent transcription regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIGEASKASKVSAKMIRCCEQIGLIAAAQRTASDHRAYGHADMHQLHFIRRTRDLGCSVAESGDLLNPWNPQSRQSADV
KRLAKRTLSY
>SEQF2266_AEE68355.1 hypothetical protein BPTD_3137 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKVEGRCHCGAIAYEAEVEPGTITVCHCADCQMQSGSVFRANISAPADTFVLLQGTPKEYLKIAASGARRMHAFCGNCGG
PIYSCAAENPQSYSLRVGALEQRHALGRPLRQIWARRRFSWLSSLGDVEEFDGQP
>SEQF2266_AEE68356.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQHASSAGRRPAVPVYLKIRNAIRDAISNAAYAPGDLLPSETELAKRYATTRATVVHAIQQLVFEGLVERKRGVGSFVAQ
PKLSSTVDTHRVAYFEQDAFARDLTYEVIGYGKAVVEDHVRDTLRLGRGEPVYRLQRLCLLSGKPIAFELRYLPALVGAR
LTAEMLARRSVQSLLDEEVGMPITRFLNAVRVALVPAAVARHLQLEKGRPVMVRTHTFLDAADTPLLWGETLYREEYQIN
YVLTAMQAPDEAVGGRPRKGAGRA
>SEQF2266_AEE68357.1 putative methylaspartate ammonia-lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPMQQDVPPIRIEAVRVTAGIGGHWINDQMAVQTGATADGYFFEGPTSSTAFPAVRSPSVAYLVSLDLADGQTAHGDCT
TVANAGYAGRPLPLRREDVQAVQAVLQESLAGRSFAGFREAAGALDAMPLADTLRLPVEYGVSQALLEAAALASRTRMVD
VLCREFGRPGPTRGPGFAGSCGGAWEANVDKAIVRGLDMFPQSAIQSRAECERLPDYAAWIAGRIRKLGAAGYRPDLHFD
FHSSLGRMLDNDEDRVLDYLATICERAAGLTVFFEDPMLSGSAAEARERMGSLRAKLDARLPNARLIADEWANGPGNVRA
FAASGAAHAVQIKMPDNGSLLTTIDAIQGCQEHGTLAYLGGSCNETDISSRASIHVGLAFGAWRMLTKPGLGFDEGLMIM
TNEISRTLSKR
>SEQF2266_AEE68358.1 hypothetical protein BPTD_3140 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHARLHSRGARLAARLALAALTAGAAALPQAAAAADSASFPDRPVTMVVPFPPGAATDIIARTVAQKLSDKWGQSVVVEN
RAGATGSIGSTYVARSAPDGHTLLVATTSSHTMGPNLSSRLPWDPVSSFAPVTLLAWAPNVLEVNPSVPAKSVQELIALL
KKNPGKYTFASSGTGSSIHLAGEMFKEQAGVDMVHVPYKGAAPAVADLLGGQVDIMFDTVALSLPHLKAGKLRPLAVTTT
RRSSSLPDVPTMREAGLPGYEMAAWIGLLAPAGTPEAVVARIQADVGAVLKMPDVKEKLQAQGTDISGMPGSEFAVLIKD
ELGRYGQVMKQAGIQPGD
>SEQF2266_AEE68359.1 hypothetical protein BPTD_3141 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAAHATSQPPATRWLAEHALGFDYDMLPADARRIVRHCILDWYAVTLAACREPAVAALVDDALEEGAGGASPVIGHAAG
VSQGAAALIQGTAAHWLDYDDVNLAITGHPTAVVYSALLPLALARGSTAREVMAAFAAGYETACRVGRWLGDVHYRHGYH
ATATAGAVAAAAACARLMRLSTAQTASALCLAGTQAAGLKALFGTMAKPLHAGLAARNGLMAARLAARGLDAGQQGLEAA
QGFAAVLSPAPDWPAATATPPGGLFLGGRLFKYHASCYGTHAVIECGRMLRERGARVQDIARITLHAHPGSENMCNIATP
RTANEARFSLRMNAAFGLLGLDASAIDAYTPARLADPAIAELRDRMRVEFHDDLAMMESRMLIEHHDGSAMQARHDAGVP
AGSIDDEASRLQAKFHALAAPVIGVGAAGRLRDAILDLDAAPGLHALAVTVPATGGAA
>SEQF2266_AEE68360.1 hypothetical protein BPTD_3142 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEPRPRRILPIIVLAQFCGTSLWFAGNAASADLGMGDSVAYVASAVQLGFIVGTLCSAWLRIADRYAASRLFFGSCLLG
AACNYPLTMLALATLPQPDAAVLILRFLVGVALAGIYPVGIRAAASWFQAGLGHALGFLTGALVLGTSFPHLMRALGARI
DGGLVLASASAIAVLGGAAMLAWVPDGPYARRAPSSGGGTLAQAWRSLPGLRAAAIGYFGHMWELYAFWTFVPFYVAAHA
AALGAPMAAPTVSLWAFAIIGLGALGCVGGGFVSRRLGSRPVALTQLSLSGLCCVLSPLCFALPTPAFLAFLLFWGIVVV
GDSPQFAALVAQESPPAQVGSIVTLVNAIGFAITVVSIQLLDALAGALPAPYVMAVLAAGPIIGVAWAGAGGWRPAPR
>SEQF2266_AEE68361.1 SpoVR family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAITGGGELHAVGRAQPISEGSEWTFELIQRYDEAISEIAREYRLDTYPNQIEVITSEQMLDAYASAGLPIGYPHWSYG
KEFIRNEQYYRKGMQGLAYEIVINSSPCIAYLMEENSMAMQALVIAHACYGHNSFFKGNYLFRQWTDADSILDYLVFARK
YVMDCEDRYGIEAVEAILDSCHALAAHGVDRYKRPTPISYREEAQRQAEREEHARRQYNDLWRTVPRQESPAGAGERRAV
FPPEPEENLLYFIEKYAPKLEPWQKELVRIVRKIAQYFYPQGQTKVMNEGWATFWHYTLLNRLHQKGRVTDGFMIEVLQS
HTNVVSQRGFDERGYGGVNPYALGFSMMQDIRRICERPDEEDRRWFPDIAGSDWLTTLDFAMRNFKDESFISQYLSPRLI
REFRFFAIADHQANPKLEVAAIHDDEGYRQIRKLLAAQHNRDNQVPDIQVVRYFRESDRALVLRHQQSRGRPLAGEDADK
VMKHLARLWGFRVRLEEAAPDGTVLSYRQIEP
>SEQF2266_AEE68362.1 hypothetical protein BPTD_3144 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSLIDRRLNGRNKSAVNRERFLRRYKDQIRKAVQDLIRERSISDMDQGGEINLPARDISEPSFRHGEGGDREIVHPGNR
EFAKGDTFDRPQGGDDGSGSQPGEGESVDQFTFSLSRAEFLNLFFEDLELSHLARTQLGDVKQQRWHRAGYTTTGSPSML
SVNRTLKASLSRRVALGVGARAALDAAEQELDAAREAGAPQAELDRLLAEVEKCAARVARVPFLDDLDLRYRNRVAVAVP
MARAVMFCLMDVSGSMDEMKKDLAKRFFTLLYMFLSRKYEHVDVIFIRHTDNAEEVDEQTFFYDPKSGGTIVLSALELMH
EIVQKRYSPATWNIYAAQASDGDSFGADAGKSARFLAENLLPATRYFAYIEVPDSQEARKSSLWAEYEQESASHFVMRRI
CERGEIFPVFHDLFKKETV
>SEQF2266_AEE68363.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68364.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68365.1 hypothetical protein BPTD_3149 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPEPAAHLPRPMAGRRVVDLSQFIAGPTAAQYLADFGADVVKIESPQGDGVRTLQGNAYGSYYARSFNTGKRSQVLDLRV
AADRAALDALLETADAFICNLAPSSLAKLDLRGPALRARFPRLVIALVSGYGQQDERVCMDTIAQCESGFALLNGDEDGS
PRLSTSWPVDMFSGMYTGMSCAMAMLDPAGQGCLIDLSMMEVAAAMLIGPAALAVSEGDALGPPMGNRDRASAPSSIYRC
ADGHVYILGGVDTYWARLRPLIGAEDAPFTERLRRAAHFDAQVEAWTLPQRRKAVLARMHELQIPAGNVRPPEEALAMIR
GLRPGAVSRPLPSGEHVPAFPALFDGQRLPRTATPHVGGGRRAG
>SEQF2266_AEE68366.1 putative coenzyme A ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKQQERQPYSDTIWDEAETWSRDRIEQFQLDALRRQLQRVARTSNHYRQVFAAAGFEPGDLKSLDDLRRLPFTHKRDYLA
GLQAEPPFGSLAAVAPGEAVRVHFSSGTTARPAPVLWTQADIERWADLYARYLYGQGLRRGDVFQCMFNYAWFVGGLGAT
LAAQHVGALVIPASSGDTQRQIETIYQYGTQCVIGTPSFMAHMAEAAQAMGRDLATSPVRMVCVVGEPGASIPGTRERIE
RQWGARMYDCYGALECQPIGWDTAAQLEPTLAEDFIYVEILHLETHEPVADGERGLLVLTHLDKQACPLVRWWTGDIVVR
DSRPAPDGRTHARLTGGVLGRSDDMLIVRGVNLFPSAIEDVVRAFPGLTNEYVIVLDDSLKDPNTGFLTGVKLRVERESG
AAADVGERLSQRLREKLQVRFQVEVVESGTLPRTVHKAKRVIHA
>SEQF2266_AEE68367.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASAHQTPADANGGESRDEILRAAAELFMEFGYAATSIDAVAQRLGSTKGRIYHHYRSKADLFFDVQVTAMNRLTAQVEP
LAREGGGAVGRLAAMALRHTQILLKEMPMQKVAVQGLERHLLEASSAAKRLRAVVKMRDDYEQMFVEVIDDGIREGSFVD
LPPRLLSKPFFGALNWATVWYSQRRLQSEEAIDDIAHALAAYALRGLLKDSNDEAARETALFRYDLG
>SEQF2266_AEE68368.1 putative acyl-CoA dehyrdogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVIWKPALDDAATRWQTLAERLGRERFGPLAPELDRDQRYPWETIEALVEHKFAGLFLPTQWGGQGANLTTTVAAVEAL
GTHCASTSAIMCAYQLGAFPILLAGTDAQKDFYLREMTLGRATSFALSERIAGSDAAAIEATATREGDGWRLRGEKYWIG
NGGASRYYVVFAKTDPAAGGRGVSAFMVDKEQPGAEIDELSDKMGIRGTQTSNLKLDLVVPDSARVGELNRALRLALQTL
NVGRIMVAAQSLGVALGAYREAAGRAVARRAFGQPIGENQAIGFRLADMATEISAARMMLYEAARAYDAGQDVSNLGAMA
KLFSSEVSHRVVDNTVQIWGGLGYCKPTVAERLYRDQRILEIYEGSSEIQRLVLSRAVRKEAEEAAN
>SEQF2266_AEE68369.1 putative ABC transporter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRLPLRRAALLPLAVIVLYLPAWLGGSPAIYSAAVLIAILAVMSYGLDVVVSDLGEVSLGHTVFFATGAYVTALLSTRT
GAGAWITLAATIVAALGVSAVVGLVTLRLREFVFSLVTYAVAVVAVTVAANWAFLGGSDGLRGLPTLDLSVAGLSLTARN
DEELWPYAFGLLVVVIYLIDRFRHSRLGTAAIMVHQNPRLATMSGIDPARVRLQVFLFSAPISAAAGWLYAYQRAYVSAD
ILETYFLILMLTAVVLVGRRQLLGPLLATALVLVQEKFFSFGGYVDKIVLGSVLVLVLAFFPQGLMGLVRPLARLARRRQ
PASPVATTLENPK
>SEQF2266_AEE68370.1 putative ABC transpoter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLLQQLINGIVLGHAYALIAIGWTLLLGVARLVNFGHGQMYMVGAFVTWWATTSAGMPYLLALPTAMALGALIGLAMQR
IMLRATFEQNLVSIMIMTLGFGYVIQGAASLIFGSTGQILDTAWSQRDIEVGELWVTWQDAAIVVAAIAVFAGLKWLLEG
SRAGRLVRMVAEDPKLAQLAGVDVRRIYYGVFAFEGAAVAFAAGMVAPRTPILTSMGFEEVIITFVVVVLGGIGSVTGSY
AAGVALGVFTALFSALVSPTYATAAAFLVLIGVLVLRPGGLSAGAARGVH
>SEQF2266_AEE68371.1 putative ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPLEDQAVLSARQLEVGYAGNHALGLDRLSVGRGEIVGVIGANGAGKSTLVNALLGWSRGRPTVRGEIRLDGRRIDAT
PTHQRVRAGLLLVPEGRLIFASMNVEENLSAAFDAGSTDGRRFYTRDEVFQLFPRLAERRRHLDAQLSGGERQMLGIGRA
LMMGPRVLLLDEPSIGLAPMLVSQVLQTLQTLARSGLSILLVEQNVRAAMEVVDRLLLLERGRLVLEGPAASVGADPRIA
QAYLGAHAA
>SEQF2266_AEE68372.1 putative ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIAQPEAAAPAPALSVQALGVRYGALVALEDVSWEVRAGELLGIIGPNGAGKSSCYDAVSALIPRTGTVRLHGRDISAVP
AHGLAALGIKRAFQQNAFFDDLSVLENMMAVLGEQAQARLLASALNPLGAARRRAQARAYAAGQLERFGVPAACHDLHPK
EISYGMQRMLSIALAYGRGATVLLLDEPAAGLGGADMAALVRLLGELKGEGVALVVIEHHMELIMAVADRICVLNLGRPL
ACGAPAAIQNDPRVLQAYLGSAQ
>SEQF2266_AEE68373.1 putative amino acid binding precursor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRIHRLFTAGLLALSLGAAAQAQQTPIKVGVIFPLSGGAGPQGQHVTQAIQAMAAVINESGGVMGRQIEIVSRDDESTP
AVGVSRATELISTGVSVIIEGWNSPVTLAMQPVIARAGVLDITAISKADPILSGEGNPLAIRLNSSNSQDGAVIADYIKS
VGAKRVAFLTENDAYGNGAQESIEASLKKLGYAYEKVAEEKFPFTQADFRVAMTNVRAAKPDVTVAINANEGLGMPAIIR
QARQSRLPGKLVSAVGTVAPSVINVAGDAADGLIGADIYFPDVEPFASNPANQRFVAKTQEMFKYTPDKFMALGATSLQV
WAMAANELKTLDREAIAKRIRGGAFKGTAMGDLQFEPNGQLKSNYYLFRVDGRKIVVQP
>SEQF2266_AEE68374.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAQTPDAAEVLVDRADGILTITINRPQARNAINLAVARGIAAAVDELDASDDLRIGILTGAGGSFCAGMDLKGFLRGER
PSIEGRGFGGLTARPPRKPLIAAVEGYALAGGFELVLACDLVVAADNAQFGVPEVKRGLAATAGGLVRLQRQLPYRIALE
LALTGDMFPARRAHGYGLINQLTEPGQALEAARELARRIVANGPLAVAASKRVVVESQDWPADEVWERQAALTDHVFESA
DAREGSAAFAEKRQPVWQGK
>SEQF2266_AEE68375.1 hypothetical protein BPTD_3160 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATDARFDGPGPDARYQAALAEGRLLLQHCEDCAAVRFPPALVCRACGGARLAWRESSGQGSVYTATTVRDRAGDYNVSL
VELEGGARMMSRVEGVEAAQVRIGQPVRARIVAGEEPYVVFAPRDGGAA
>SEQF2266_AEE68376.1 putative hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVDPDRLLAAEIPAVEQQYDWRQCVLYALGIGAGLDPEDGLDLPFVDETRLKVAPTFANVLADPGFWMRDLPLGLDWLR
TVHGEQSMRVHRPLAGRASVRGVTRIVDVADKGRDKGALIYAERELIDLADGAPLATLSQTVFCRGDGCFGGKPSARPPP
PPVPARAPDASVHARTSPQSALIYRLSADLNPLHIDPAVARQAGFPRPILHGMASFGAVGQALVKACCGGEPAAVRGMGG
RFSAPVFPGETVRVDIWRAGPGRAAFQARVAARDVVVMDNGTFDYEA
>SEQF2266_AEE68377.1 hypothetical protein BPTD_3163 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGSTAGKVLVVGALGVVGRAALEHFGQRPGLARVGLSRHAPDFAPEASWVSADLRDAQATRAALAAHGDATHVVYAALN
EQPDLLKGWRDSGNVDLNTGMLRNTLDALREAPLRHVTLLQGTKAYGVHTGRPMPVPARETDAVRDHANFYFDQQDLLAE
RAAAQGFGWTIFRPQIVLGVALGSAMNPVATLGAYAALSREAGQPLRYPGHPHLLTECTDARLIARAIAWAWDEPRAHGE
AFNIANGDVVLWQPVFERLAALFGMPLGEPVDTRMREAMPQLAERWRAIAERERLAVPELRDLIGLSWQYADATWAARHP
LPVPPLVSTIKLRQAGFGDCIDTQDCIVEHLREMQRLRYLPR
>SEQF2266_AEE68378.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68379.1 putative fatty acid desaturase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVRPAEWLRHRRDWQSVLYLAALPALAAWQWVHGWHWALYAPMLFLTLGVGVIHHNHAHRRMWRPRWLNRLTDFWLTLLQ
GHPTFVFHAAHNANHHRYKHGPRDVARTYRFGGDTNHLAGYLLHPLQAVVVLYPLFLASLRRLRSRRPGVWRYCLRQYAA
WLGLWGGLLALDPGKAFWLVIVPQLHGLHWLLATNYLQHAHADGGPGRHAALSYARNFEGWVNPLLFNIGLHTAHHENPR
AHWSELRALHWQHYRDRVPSRLNERGLAPYMARVFVLGLFSRRCRTHTLMRP
>SEQF2266_AEE68380.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68381.1 ribonuclease H [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQNLEGSGDGQQVEMWTDGACKGNPGPGGWGVLMRAGQHEKTMHGGERQTTNNRMELMAVIEGLRALKRPCRVTIHTDSQ
YVMKGMTEWLANWKRRGWRTADKKPVKNVELWQALDEQVGRHQVQWRWVRGHAGDPGNERADALANQGMEAARGR
>SEQF2266_AEE68382.1 hypothetical protein BPTD_3172 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAEETPPIVELAEWFQTPPGQYVLAWEQAQFDEAVADIFGYYAWQVGLAEPNLLRANRMPFKAWVGAGVPPPELAQGWQA
CVAAAPEALPFESQSVDLLVLPHAFECAEAPHLVLREVERVLVPEGRVVISGFNPWSLWGARNLMPGMEAWLPLPLSAQV
ALPRLKDWFKLLSFEVERGRFGCYAPACRTDKWLRRWRFMERYGQRWWGLGGAVYVVTATKKVAAMRLIGPAWKTRRKRA
QAASVVVNRQADDPGR
>SEQF2266_AEE68383.1 hydroxyacylglutathione hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTAPPLSAVVPLPAFSDNYIWALAHEGQAAVVDPGDAAPVLRWLRATGATLRAILLTHHHPDHVGGVLELVQATGATVY
GPAGETLPHCDVRLAEGDRVTLPELALALEVLDVPGHTAGHIAYTGRAAGVERVLFCGDTLFAGGCGRLFEGTPAQMLDS
LEKLSALPADTQVCCAHEYTLANLRWALAVEPANRTLQQWYQRAQELRNEGTPTLPSTIGQERETNPFLRTPHAAVAHAA
AVWSGRSLATPVEVFAALRQWKNNFK
>SEQF2266_AEE68384.1 putative membrane-bound lytic murein transglycosylase D precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFLRLLLPLFLAVLAGCAGTAKQNQAAGPSSNRYIAQDTSRTVDLTSPPSDAWDRIRRGFAIPNLNTDLAQEWTDYYAS
HPESVQRMAERAGKYLYFIVDEINRRGLPTELALLPFVESAYNPTALSRSQASGLWQFIPTTGQHFNLKQDWWRDERRDP
IASTYAALDYLEKLFEMQGDWYLALASYNWGEGSVQRAMAKNEAAGLSTDYLSLNMPDETRNYVPKLQAIKNIIANPRKF
AVVLPPVENTPYFVAVQKNRDIDIELAARLAEMPLDEFKALNPAFNRPLIRGEHAPTLLLPADRADRFNANLQNYKGDLS
SWKVYHTRRGESYAAIAKRFGISEAKLRASNDIGSKRKVAADQALLIPGVPSGDGAANIQLASLSPPVGALDNVGEPRAA
AAPRGKAPARVASARPNVRTHKVSSGDTLFGLARKYGTSVGALRALNNLKGNNLKLGSQLRIPGTGTRG
>SEQF2266_AEE68385.1 enoyl-(acyl carrier protein) reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGFLAGKRILMTGVLSNRSIAYGIARACRDQGADLAFTYVGDRFKERITEFAASFGSDIVLPCDVAEDSQIDAAFAELGK
RWDGLDGLVHAIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPAMAKAALPLMEGRKGSVLTLSYLGSERVVANYNTM
GLAKASLEASVRYLATALGPRGIRANAISAGPIKTLAASGIKDFSSILKFVEANAPLRRNVTIEDVGNVAAFMLSDLAAG
ITGEITHVDAGFSTVVPGMEN
>SEQF2266_AEE68386.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE68387.1 hypothetical protein BPTD_3177 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIQVRANTPGGLQYTATAEGHELPLAMPQPQGEGPDPHDYFDTALGGCKALTLMVYAQRKGLPLQAVDVDVVRDASEER
KGIYRLTAKLKLHGDLDDAQIDELLKVADKCPLHKLMTATDIQVSTIVVE
>SEQF2266_AEE68388.1 hypothetical protein BPTD_3178 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSARQLLDQLLQSGQSLMQGAGAQAQQATQGGKGTFLAGLGGGALGAGALGLLLGSKKARKIGGKVAMYGGMAALGALAY
RAYDQYQRNQAGGAAAPAPQTLDRLPPAPAEQHSNAVLVAMIGAAKADGHIGPDERQLLETELAKLSGDAGDRAWLEAEL
ARPLDPAVIAQQARTPEMGAEMYLASLLVADEQSFMERAYLDELARQLKLPAELKQQLEAQVPAAA
>SEQF2266_AEE68389.1 hypothetical protein BPTD_3179 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPVAPMTTMKSQVSILLAGCLLGAGAAAAQAPATYPDHAITIVVTFPPGGGTDLLARKLGAAMQQRLGQPVVVENRPGA
SGNIGARAVAEARPDGYTLLMVNSSFAVNPGVFRNLDFSPTRDFTAVINVAYVPSVIVTAEPAGDAGLPERLRQADTQSR
TLAFASCGNGTPQHLAGEMLRQASGAWLQHVPYRGCGPALTDVLSRQVPLGIVTASSAAPFIHAGKLRALAVTSAQRSPL
LPDVPTVAEQGAPGYELDQWHGLLAPAGTPPAVIQRLYEALSAIVAEPAMRRELESLGFNPVSEGPERFEALVQADIARF
AALTARMGLRAD
>SEQF2266_AEE68390.1 two component response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDNPHTKLLVVDDDPALRQLLADYLNRHGYDTLLAPDASDLAARITRYAPDLLVLDRMLPGGDGADACRRLRDQGEDIPV
ILLTARDEAVDRIIGLEAGADDYLGKPFDPRELLARIEAVLRRKRGPSALTKDAPVSFGPFVFDPATRQLLRDDTPVKLT
GGEINLLEALVRNAGKPLSRERLLALARDDDGGERNDRAIDIAILRLRRAIEEDPKQPRWIQTVWGIGYRFSP
>SEQF2266_AEE68391.1 two-component sensor kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLLRLPAPRSLRMRLILLVLGSVLLAQAATLATVSYFRHKFMEDVAIDYIATTIRTLRASLSQVPTDERAEFVRQASGN
QWRLWSRSLPADARLQRWHRGPQEDEAERERMRREYERRHPPPDDIRRDLRGLVSELNERLSDGTRVALSRGPRPEIFIS
LAPSPSPDDAPPLREWLVIPLERLDPPVATPLIAFWVGGIGLVLLLAAWFSWHITRPLTRLADAADQLAAGQPQRVEPSG
PHETRVLGERFNAMLDALAESDSVRRTLLSGLPHDLKGPLSRMWLRIEMADDPTLKEGLRKDLQDMQHMVDQFIGFVRGT
DPAAYRYAPLALGEWLAERVGAWQGAGTDIRLQAPDNGALGIQADAVALGRLLDNLIGNALHHGAPPVEVSLRRDADMAV
LEVSDHGPGIAPERRTEALRPFARLDDARTRTGNVGLGLALAEAIARAHGGGLELRQAPSGGLLVRITLPLAKA
>SEQF2266_AEE68392.1 putative cytochrome oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIATLAASLGLSPDDPSFWMPLVFVGLLLLLMAAGIVLDGFDIGVGLLLQLAPSEERGRMMGLLSPWRDANEFWPLLGLG
LFVSAFPFAWGGVLGKLFGPLTVMALGMVLRSVSFEFRIRARTEIKPRWIFGFWVGSLLTALGQGMVLGRIATDYQADSG
YGWFAFFVGLCVMAAYALLGACWLVMRVDGELQRRAAGWARHSIRWTAAGMVAIAVTLGLANAGIFYKWSNTAHLGVAAM
VWALMLLGFVAAEMLLARLPGKADGFSWLPFVLCVMLFVLMLCGLAYSFFPYLILDDMTIWDGSGALDSMRLVLAGTVIG
VPVVLVFNILAYRSVFGKERRPVPLLPPPGA
>SEQF2266_AEE68393.1 putative transmembrane cytochrome oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNIPPLLLARAQFTASLGFLALFLAISLALAWLLLFFKLRARWSGQSGWTAAYRFWVRIFALAFVLALACAVPVLIQLGS
LWSGLMDKIGNLAGPLLGYGVLSIFIVKSCFLGVMLFGQRRVSDAAHTLAVLMVAIGQLVAVGWVLALFSWLQTPDGAVL
IDGRYQVYDWRAVVLNPSFGWRLGLTVLGAFLTAGFLMLGVTAMQALRRPLDDGERHAFRAGLTVALLASLLLGPVAAGM
GEVTARLQPAKAAAAAGFWHSGAEPELVVFGWPSARAQANLAAVSLAGAGGRWLHRDASLGYLGLDKFSGMQPPVAFTFW
SLRLALGLGLLMLAASCATLALTCRRGFDPVALPRWWLRVLSLLMFAGALGVVATWCYDLAGMQPYAVNRAVTQSEVLGP
VTTPALLYSLAGHIALYAVLLAAFVGMLFHAARYGVVPVRKTGGSS
>SEQF2266_AEE68394.1 glutaminyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHAPTPPAASNFLRPIIEDDLQANRFQGKLWAGKPGPAALQAQGQPDPARIRTRFPPEPNGYLHIGHAKSICVNFGLAR
DYGGVCHLRFDDTNPEKEEQEYVDAIIEAVHWLGFDWQADGNDNLYFASDYFEFMYEFAEALVQAGHAYVDEQSAEEIRA
SRGTLTEPGTDSPWRDRPADESLLRLREMRDGKHPDGSLVLRARIDMASPNINLRDPVMYRVRHATHHRTGNAWCIYPMY
SWAHPVEDALEGITHSICTLEFEDQRPFYDWILARLAELGKLARPLPHQYEFARLNLTYVVTSKRKLLQLVREGYVDGWD
DPRMPTLFGLRRRGYTPSSIRLFCDRTAVSKSDSRIDYSLLEQAVRDDLDPVAPRSVAVLDPLKLVITNYPEGRSETCSA
PRNPHDPQAGVREFPFTRELWIEQDDFREEPPKKYFRLFPGNTVRLKYGYVVRCTGFTKDESGKVVEVQAEYLPDTKSGT
PGADSVKVKGNITWVSAAHAVPAQVHLYDRLFADAHPDGGDKDFLACLNPNSKQTVQAWLEPGIEAVPGATWQFERLGYF
TVDSKDSRPEAPVLNRIVTLRDSWQAA
>SEQF2266_AEE68395.1 septum formation inhibitor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTESLALDFKSATLYAIRVVLHDADTTRLRAALDKRMADAGSFFENEPVVIDATRVDAPVDWPALLQALADHNLPPIGV
VAEGANLQGARDAGLVPVELSTSVARAPQVIDTAPPNDVATPVPSVPEATAEATAKAGPQDDEADGEQADEAPAHNPESV
PTRAARETTEANRPTATPPQSSSALVITKPLRSGQRVYARHTDLIVIGMVSQGAEVIADGNVHVYGPLRGKAMAGARGDT
SARIFTTQLDAELLAVAGVYRVVEDKLDRALHNQPALVRLDGDTLRIEALKG
>SEQF2266_AEE68396.1 putative septum site-determining protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRIVVVTSGKGGVGKTTTSASFSAGLAMRGHKTAVIDFDVGLRNLDLIMGCERRVVYDFVNVIQGEASLKQALIKDKQL
ENLFILPASQTRDKDALTQEGVEKVIDELKEMGFDYIVCDSPAGIEAGALMAAYFADDALVVTNPEVSSVRDSDRILGIL
AAKSRRAVQGDEPVKEYLLLTRYNPKRVNDGEMLSLSDIEDILRIKLIGVIPESEAVLQASNQGLPAIHLKDTDVSEAYK
DVVARFLGEERSLRFTDYEKPGLLKRLFGGK
>SEQF2266_AEE68397.1 cell division topological specificity factor MinE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFLSFLLGQKKSSASVAKERLQIILAHERGRGDSPDYLPQLQQELVAVISKYVKIDPEDIKVHLERQDTLEVLEVKIEM
PQN
>SEQF2266_AEE68398.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKQVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE68399.1 osmotically inducible lipoprotein B precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIGTLSKACMAALLAVSMAGCSSWDSMSRRQKSTVGGAALGGVAGAVITNGGILGTVGGAAIGGVIGDQVGK
>SEQF2266_AEE68400.1 hypothetical protein BPTD_3193 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFPLLATTIWSVNMVVTKMAADVIAPASIGFYRWVLAGLLLAPFALPGVLRQWPQIRPNLGRLAVLGGLGMALYQGLMY
VAAGTTTATNMGIITAMVPLLTVVVGSLVLRERPALTAILGAVVSLAGLGILLGEGNPLRLLALGGSRGDALMGLAALAY
ALYGVLLRKWPMSVGPWQSLFVQVLFGIVFQLPAFLLTPASSLNAQNIPLVLYAGIFPSLFAPFLWMQGVRYLGPNRASI
FLNLMPVVTVAIAAAFLGETPHLYHIAGGLMALAGVSLAQWRPARRRA
>SEQF2266_AEE68401.1 hypothetical protein BPTD_3194 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASAQPPASLTHFSPAELDMLAKTADALSAYLGKPVLAEVALGDEGTEWVTFGVALDTDADETDDAAPHVQMGGAGARL
LGGRGGLPDSDTESYDCLYLWAVQISLVEGERFIKLDQDGDECAWSDQLTDVLPFALSEDELPPDDDEDDEDDEDGADDD
GPGHNGDTHRH
>SEQF2266_AEE68402.1 putative binding-protein-dependent transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRTMIAIAIAAACALPSIGQAKTFRWASQGDILTFDPHSQNEGMTIAANSYVYEPLVAYDKDFKVVPALATEWTQVSPT
LYRFKLREGVKFHDGAPFTAEDAVFSIHRAMAPTSNYKAYITGIKEARKIDDYTIEIETSAPNPVLLRQLPNVFIMNKAW
SEKHNVAKPQDFVNKEETFAARNTNGTGAYKLKSREVDVRTVFVENTEWWNKDRKIGNVTEVVFTPIKQNATRTAALLSG
EIDFVLDPAAQDLERLRQQAKVVEGNEYRTIYFGFDQKRPELLYSSVKGKNPFADVRVREALYRAIDVEAIKRAVMRGLS
APTGTMIAPQVHGWTEALHKRVPYDPEKARALLKEAGYDGTLSFTLDCPNNRYINDEAICQAVVGMWAKVGVKASLNAMP
RATYFPKVQSRDTSAFLFGWGVPTFDAMYTLQNLVRTKGEGADGMYNLGDYSNKEADAIIDRIKTETDPAKRDADIVRAL
EIHAQEFGHIPLHDQVIPWAMRKNVTVIHRADNRLSADWVRID
>SEQF2266_AEE68403.1 putative glycosyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDSQFQFTVLTPTYNRAVTLHRVFQSLQRQTCRDFEWVVVDDGSTDNTHEVVRAWQAQADFPIRYVWQHNQHKKTAFNR
GVREARGMLVVGLDSDDEIPPDALAILKDAWEGIPADRRETYVAVTGLCARPDGSIVGDRFPQDVFDSTAVDMYFRYRVQ
GEKFGAMRADVLRRFPFPEDVAGFVPESLVWWAISRAGYLSRFINRVVRVYHDTPGGLSQGGVSLSSNIQGLYLLAWDML
QHHLDWFRYRPREFIMAAARYTRFRLHLDNSGLPTAVQAYRLTQPSARLLVLLMWPLGYLLYRRDRRRGVA
>SEQF2266_AEE68404.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAYSYFAIGRGTLAPYLSDPVMQAQTVQLNDIALFVEVAKRKSFSLAARALDMPTSTLSRRINQLEKAIGLRLINRNTRR
LELTDAGTVYLLRCQGLIDETRLAREQLESLTGRPKGRLNISMPYSLAIWLLPTSLGAFLDSYPEIDCEFDLNLNASATS
QGAPFDVILRFGRDSGDDETPDPNTVVDEIISLDSYLYASEDYLARYGEPRDPADLGRHECLRTAIDPEHSHWTLHNGER
TERVEVSGHVAGNNISVVGTLAGLGLGITRLPHCQALDPVIERNSLRRVLPQWRVQPISIYAVYPSPILPGRTRVFMDFV
RPMLGPAPTGPQPRA
>SEQF2266_AEE68405.1 hypothetical protein BPTD_3199 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSYSDFRRRLFAPAMAGAGAAATPLEIIMAERKRVRRNTLERRCLGKAFKRLFVKSPKGVFKMLEKIKRV
>SEQF2266_AEE68406.1 putative excinuclease ABC subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSQIRIVGARQNNLKNLDLTIATGELVVVTGVSGSGKSSLAFDTLYAEGQRRYVETFSPYARQFLDRMDKPQVDRIEGI
LPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLFARGARLYCRGCGKQVRRDTPESVFHSLAGRAAALGDPRLVVTFPIAV
PANFTEDEVRGFLDQQGYTRVHAEEAASAAAPAPKARRGKSAKGAKDGAAPVARRILHVVQDRFRFAAAERERVMEALDT
ALRMGAGHLAVYAMGEEGGADQAVWKYSDRLHCADCDIEYTDPLPSSFSFNSPLGACEACRGFGRVIGIDIGLVIPDENK
TLLEGAIKPWQTPSFKECQDDMVKYAPRAGIPLSVPWKSMTPEQRGWVLHGDPDWKGGNQAWKTQWYGVHKFFAWLESKA
YKMHVRVLLSKYRSYTPCPTCHGARLKPDALLWRLGSRAEADAVLPPGEGRYQRFMPAGTSWSRPQLEALDGLSVHDVMQ
LPIERVRRFFDGLRFEGVLDAAADLLMTEVRARLKFLCDVGLGYLTLDRQSRTLSGGEVQRINLTTALGTSLVNTLFVLD
EPSIGLHPRDMHRVVEVMHRLRDAGNTLVVVEHDPQVMVAADRIIDIGPGPGERGGRIVFDGSPAQLRAANTLTGDYLGG
RQRVEAPRPMPVANNTPRLILEGATAHNLNNVSIELPLGRLVCVTGVSGSGKSTLVQDVLYPALLKQKGKPSEAPGAFDR
LLGAEQIADVVMVDQTPIGKTARSNPASYVGAFDAIRKLYAQAALSKERGYTAGTFSFNSGDGRCPTCGGTGFEHVEMQF
LSDVYLRCPDCDGKRFRPEVLEVRVEHLGKSASIDQVLEMTVSEALEFFKGLRDVQTGLAPLADVGLEYVRLGQPVPTLS
GGEAQRLKLAGHLAEAARSGISTAKVAKKGSLFLFDEPTTGLHFDDVARLMRAFRKLLAAGHTLLVIEHNLDVIRAADWL
IDLGPEGGDAGGEVVGVGTPQDLMANDRSHTGLALRDYEGSILPVAPVSALAEPAAAYGEEAGTPLQSLMRRRRQAAQSI
EIRNAREHNLKNVNVEIPRDKFTVITGVSGSGKSTLAFDILFNEGQRRYLESLNAYARAIVQPAGKPDVDAIFGIPPTVA
IEQRTSRGGRKSTVATMTEIHHFLRLLYVKLGTQYCPDCKVAVEPQNADQIVARLLREHKGQHIGVLAPLVTARKGYYTD
LAKWAGSKGHTHLRVDGAFIPVSPWPRLDRYKEHTIELPVADVVVDPGNEAALRDAVRQALEHGQGVLSVVYPLDRLRAG
LDGDLQQQHFSVKRACPSCGISFPEPDPRLFSYNSKHGWCGGCFGTGLQLQGFDAEQTGEETAWNAWYEGEARTCTVCHG
QRLNRVALAVRWRDRSIAELAALPVSDAHTFFTGLVTRGREGEIARDILAEIRGRLNFMQEVGLSYLALDRAAPTLSGGE
AQRIRLAAQLGSNLQGVCYVLDEPTIGLHPRDNRILLDALARLEGNGNTLVVVEHDDDTIRRASHIIDIGPGAGIRGGRV
VAQGSAQDLIDAPESVTGRYLAKPLAHPLNGRRAVTADTPMIRVHGARLHNLRSVDASIPIGRLSVVTGVSGSGKSTLAR
EVLLDNLVQAVSQGKAPGWSGCERITGWEVIDRVLEVDQTPIGKTPRSCPATYVGFWDDVRKQFADTREARMRGWTAARF
SFNTGDGRCPICEGQGMRTIEMSFLPDVKVPCDACNGARFSSDTLSVQMRGKNAGELLAMEVDDAIGYFAAHPKIHRPLQ
LMQDVGLGYLTLGQPSPTLSGGEAQRIKLVTELSKARLTEGVITTGRASRAPHTLYVLDEPTVGLSMADVEKLIHVLHRL
VEAGNTVVVIEHNLDVIAEADWLLDLGPEGGSGGGQLVAEGSPEHVVSLRERSHTGRVLSEFLQQ
>SEQF2266_AEE68407.1 aminodeoxychorismate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MECRFEDRLAGRALRLAGDPIRIEARSVDAVAPALREIERARAGGRWIALLLDYELGEWLLPEALRAPASGAAPAPREDG
RARLTALAFERAEVEAPWPAPATPAARIVSVAPRMARDDYLRAVDAIRELIAAGELYQVNYTQPLDVRIEGDPRLLYRQI
AARHPVGNGAYIEDGERTILSFSPELFVARQGERLVTRPMKGTAPRHADPAEDARLGRELLASDKNRAENLMIVDLLRND
LGRLATPGSVKVDALFSLERYPTVWTMTSTVSAHAPHAGLADVLRALFPCGSITGAPKIAAMRRIRQMEAAPRGLYCGSI
GWLAPDGDFSLNVAIRTLVLDRAGHGVYGVGGGIVHDSDAAQEWQECHWKARILG
>SEQF2266_AEE68408.1 hypothetical protein BPTD_3202 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPELIETILVTADRQLPLLGRHLARLLTSCQALRYRCNEPAVESAIMAAVRGLHAPGPHRLRLLLARDGSHDIQTAPLA
PLPPDQEVMLAPEALDADEPLLRYKTTYRPWYAHTIEWLPSHPRVFDLLYLNQHGELCEGSRSNVYLELGGRWYTPPIAS
GCLPGVQRAELIDQGKVQERTLTMSDLRSAESIRLSNALRGWIEVQYH
>SEQF2266_AEE68409.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKCKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCARLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE68410.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRPVVLVTGASRGIGRAIAQRLLADGYDVVNFSRGKPADVLPGERFVPVDLSDTEAARRAATELAAQREVLHLVNNAGL
IEVAGIDQVAPDAMQRTLALNLVAPLVLLQALLPGMRARGYGRVVNIGSRAALGKPGRSAYGASKAGLAGMSRTWALELA
PAGITVNVVAPGPIATELFNQSNPPGDPRTRQLEAAIPVGRVGRPDEVAHAVASLLDPRAGFITGQVLYVCGGMTV
>SEQF2266_AEE68411.1 hypothetical protein BPTD_3205 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRTPGQWRACRAAVRALIAACMATLAAQAGAAGYPEHPVTVVVPYPPGGAADIFGRAIAHAMQPHLKQTVLVENRPGAG
GNVGMTYVTRSKPDGYTLGLGTIGTQSINQFLYADMPYDPGRDLVPVALVSTTPNVLAVSARSPYRTLADVIEAARQRKD
NKLTYASPGVGSSVHLAGAYFEAVAGISLLHVPFKGTSASLPAVAGGQVDLLFDNLPGALAQIKDGSLVRGIAITSAQRD
PSVPDLPTFAEAGVAGFDVTAWFALYAPRGTPQPVAAARQGLQAPELARQFGAMGARPGDKFGAQLGQFEQAERQKWGEL
IKQRGIRAQ
>SEQF2266_AEE68412.1 acyl-CoA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAALAPLPEAAMPAAELFATRLDTHARERPEAVALIDRDRPVTHAALRAGVLDLAGGLAALGVCRGERVALWLPNCAHW
VTMFLACARLGALTLAVNTRFRAQELGDILGRGQADWLVYWPGLKGIDFAGILAAVPPAARARLRGAIVVDGSGAQATPG
PAGLAAHALAALHGPAPLPAPNAGVLCFTTSGTTSLPKFVLHDQDTLLRHGDAIARSYGYDDDSRILASAPFCGAFGFAT
LVGALARGVPVICEPAFDAARSVAAVRRHRVTHTYANNEALVQMFRLGERADFATARLFGFASFAPALGDLLPLARAQGV
PLTGLYGSSELIALVAAQPREPADGDVSVRYEPGGALIHPEARVRARDPQDGRILTDGESGEIEILAPSLMRGYLDNPQA
SAGALTDDGYFRTGDLGYTLGTRQFVFQTRMGDSLRLSGFLVNPAEIEQAVEALPGIRACQVVGATRDGKTVPYAFVLLD
AGASPDPPGWMAACRQGMAGFKVPAGFQVLEAFPVVESANSAKIQKHKLREQAEALLAAAPAA
>SEQF2266_AEE68413.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAARLFARSPQPLYLQAAAVFRGHIQTGVWRPGRQIPPLDALAARYGIARSTVRQALGLLEADGLIRRSRGSGTFVEDT
LPETPTLLIPKNWAETVALSRQLGTVALHESSAQQPLPDDLGIPCDFARDGRFQYLRRLHTAAAGPFCFSEVYLESALFR
KHRAEIRASTVAPVLDRHYRARLSHARQVLNVIEAGAASAQVLRIPVSAPVAELRRYVCIDARVVYFARLEFPFHKVRME
FDLLP
>SEQF2266_AEE68414.1 hypothetical protein BPTD_3208 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSQPSVIAPACEADAERRFGGLARLYGPDAPAALRGAHVAVAGLGGVGSWTAEALARCGVGALTLIDLDHIAESNVNRQ
IHALSDTLGQAKIEAMAQRIGQINPACAVTRVDEFVAPDNVMQVLGGPYAAIVDCTDQAAAKIAMILHARQRGVPLLLCG
GAGGKTDPLALRAGDLSEAVNDALLAKLRNKLRREHGFPRASDANGKVRKRVPRMGVRALWFDQPAILPDAWTRAVEGED
DMGAAGTRAAPQGLSCAGYGSVVTVTAAMGLAAANEVLRWVVGKPGA
>SEQF2266_AEE68415.1 putative inner membrane efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTSDPTPSRPTHGPELSGAGYLCLLAMLNHMALTGGRITVSLTALKLGLSTFTVGMLVAVFAVLPMFASVHAGRWVDKI
GVVRPLVIGSSLVTFGTALPFVSQTQAALLVASCCIGIGFMLHQVATQDLLGHAEPRERLRNFSWMSLALAASGFSGPLI
AGLAIDHLGTRLAFGMLALGPMLSLVGLYLLRQPLRTMNGALTGGSNRPAERRRITELLAVPPLRRILMVNTILSGAWDT
HLFVVPIFGVAIGLSATTIGVILAAFAAATFVIRLVLPFIQTRVRSWTLVRAAMATAAIDFLLYPFFTDVGMLIGLSFVL
GLALGCCQPSMLSLLHQYSPPGRAAEAVGLRMALINASQVSLPLTFGALGAVIGVAPLFWAYALALVAGGWANRNPPQES
DSSKSS
>SEQF2266_AEE68416.1 hypothetical protein BPTD_3210 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTQSPPSPHDPHGAAALPFRLWTAEERRASLDTALREWRDGEDVWVYGYGSLIWRPDFDFVERRLATLHGHHRALCLWS
RVNRGTPECPGLVFGLDRGGSCRGVVYRLAGRQVPDYFPALWDREMSTGAYLPRWLRCATEHGPVNALVFIMNRANPAYI
RALPEPELLAIVRRASGRYGPCTEYVVQTAQALRQAGIRDARLEQIARQLEADVHPLGV
>SEQF2266_AEE68417.1 pyridoxamine 5-phosphate oxidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVSDLRQSYEKGVLVEEQAAASPFQQFARWFDEAVAARVPEPNAMTLATVNAEGQPSARIVLIKGYDDAGFVFFTNYES
RKGLDLDANPRASLLFFWQPLERQVRIEGVIEKVSAAESDEYFHSRPLGSRLGAWASRQSQPITRDELEAREREFRDRYG
EHPPRPPHWGGYRLKPNRFEFWQGRPSRLHDRLRYEPDGKQGWTIDRLSP
>SEQF2266_AEE68418.1 putative monooxygenase component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAAFPPAFDAAFFRTALGRFATGVTVATTAGPDGQPVGLTVSSFNSVSLNPPLILWSLARTSSSLAAFERCQRYVVNVL
SASQIALARRFATGKTPERFAGLTLAQAPAGTPMLGEGCAAWFECRNRSRYEEGDHIIMVGQVEHCGHSGVPPLVFHAGG
FDLTPPHGGASS
>SEQF2266_AEE68419.1 hypothetical protein BPTD_3213 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTDIDCIVIGAGVVGLAIARALAAGGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAA
RGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDA
ESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEYLCKGSYFTLAGR
APFSRLIYPVPQHAGLGVHLTLDLGGQAKFGPDTEWIATEDYTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKIS
GPHEPAADFAIAGPASHGVAGLVNLYGIESPGLTASLAIAEETLARLAA
>SEQF2266_AEE68420.1 formyltetrahydrofolate deformylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQHNDYILTLSCPDRTGIVFRVSGLLFELGCNIRDSQQFGDEETGRFFLRVHFDLPRAAAESALREQFAALANGYDMQWQ
IHDAHRKARLLIMVSKQGHCLNDLLFRVSSGQLRAEVAAIVSNHNDYASLAASYGIPFHHMPVTPDTKAAQERQVLELVE
REQIDLVVLARYMQILSADMCQALAGRAINIHHSFLPSFKGARPYHQAHARGVKIIGATAHYVTSDLDEGPIIEQDIERV
DHTMTAADLTQVGSDIESLVLSRAVRSHVEHRILLNRSKTVVFR
>SEQF2266_AEE68421.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLEPRLLRYFIAVAQERNFSRAAQRLHISQPPLSYAIRQLETQLGARLFERSSRHVALTDAGRVLYGEALSLLRQGEEV
GRLVRRAEAGLQGRLRIGFVGSMLYRGLPDLLAALRAELPDVEQVLAERNSHDQLEALRCGELDLGFIHANPPPEGVSAR
DLVAEPFVVCLPDTHRLAGQRSLRLADLAGEDFVFFAQAASPSYYETVLSLCVAAGFHPAVRHEVRHWLSVAALVASGLG
VSIVPACLARAGLAGTCYVAFEHQARSVCQIAWPSLAPTSLQATALQAALRHFAPPPVRA
>SEQF2266_AEE68422.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68423.1 indole-3-glycerol-phosphate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDILAKILAVKAEEVATARQMRSEAELLREAQARQDVRGFAQAIEDKISQGKAGVIAEIKKASPSKGVLRENFDPAEIA
ASYAMHGAACLSVLTDVQFFQGSHDNLRRARAACSLPVLRKDFIIDPYQIISARAMGADCVLLIVATLAPAQLRDLETLA
IDLGMDVLVEVHDAKELDAALALRTPLIGINNRNLRTFETTLQTTLDLLPMIPAGKRVVTESGILKPEDVRLMREHDVQA
FLVGEAFMRANDPGVELARLVA
>SEQF2266_AEE68424.1 anthranilate phosphoribosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTIAATEALTRCIEHREIFHDEMLHLMRLLMRGELSPQIASALLMGLRVKKETVGEITAAAQVMREFATPVVTPNPQDLL
DMCGTGGDGSHTFNISTTAMFVAAAAGVPIAKHGNRSASSSSGSADVLEALGANLQLTPEEVAECVAATGIGFMFAPAHH
GAMKNVAAVRKELGVRTIFNILGPLTNPAGAANQLMGVFHPDLVGIQVRVLERLGSRHVLVVHGKDGMDEASLGAATMVG
ELKDGVVREYEIHPEDYGLSMMSNRGIKVSNREESRALVIEALDNVDGVARDIVALNAGLAIYAGNKADSIPEALALAFE
TISNGSARAKLEEFCAYTRKFQK
>SEQF2266_AEE68425.1 anthranilate synthase component II [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLMIDNYDSFTYNLVQYFGELGEEVRVARNDQITLDEIAAMRPDRICVSPGPCSPAEAGISVPVIQAFAGKLPILGVCL
GHQAIGAAYGGDIVRAQQIMHGKTIAITHTGTDIFTGLPSPCTVIRYNSLTIDPATLPDCLEVTATAPDGDIMGVRHKTL
PLYGVQFHPESVLSEHGHALMRNFLTR
>SEQF2266_AEE68426.1 anthranilate synthase component I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTELEFKALAAQGYNRIPLVAETYADLDTPLAIYLKLAHSGPQGGRMSCLMESVVGGERFGRYSFIGLPARTVIRASGST
TEVLQDGHVAETHEGDPLAFIESYQARFKVALRPGMPRFCGGLAGYFGYDTVRYIEQRLGPAVKPFPDGMEEGTPDIMLL
HVDELVIVDNLAGRTYLMVYADPAQPEAYSHAQQRLLELRARLRRPVEIPYSYASMQTEERRDFQKADYLAAVARAKEYI
AAGDVMQVQVGQVIAKPFRDAPLSLYRALRSLNPSPYMYFWNFGDFQVVGASPEILVRQEQIDDQGETRSQITIRPLAGT
RKRGGTPEEDLALAAELQADPKERAEHVMLIDLARNDVGRVAEIGSVRVSDTMVIERYSHVMHLVSNVAGKLLPGMSSMD
VLRAAFPAGTLTGAPKVRAMEIIDELEPVRRGIYGGAAGYLSYGGEMDVAIAIRTGVIKNGTLYVQAAAGIVADSSPEAE
WAETEAKARAVLRAAEQVQHGLDEPI
>SEQF2266_AEE68427.1 putative phosphoglycolate phosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHTINAVLLDLDGTLLDSVPDLAIAANAIRRDLGMAQLPEALVATFVGKGVDNLVRRALAGSLDGAAPDEALFARGRLSF
FKHYHAVNGAHATVFDGVKAGLAAMREQGLPLAVVTNKPTEFTLPLLERTGLAGFFRLVVCGDTCARRKPDPDQVLHACD
RLGVAPAQAVTIGDSVNDALAGRRAGTAVLAVPYGYNEGMDVRSLDVDGIVDTLVDAAHWISQRNAKPQRTTAA
>SEQF2266_AEE68428.1 ribulose-phosphate 3-epimerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHIMPPEIANTMSTQPASTRIAPSILSADFARLGEEVRNVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVQVPID
VHLMVEPVDEIVPQFAKAGANVITFHPEASRHVDRTLALIRDHGCKAGLVFNPATPLHYMDYVMDKLDVVLLMSVNPGFG
GQAFIPATLAKLRDARARIDRWRAAGGQPILLEVDGGVKVDNIAEIRAAGADTFVAGSAIFGKPDYAQVIGQLRAEIARG
ETIAV
>SEQF2266_AEE68429.1 ApaG [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNRERPVKPYDLTVSVTPRYVPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLL
APGETFEYTSGCPLPTPIGTMRGTYHCVGENGIPFEVPIAEFLLAMPRTLH
>SEQF2266_AEE68430.1 putative membrane-bound transglycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRLLCLSLLSVLLAACTTPSQIPPETAPGGVPPAAEGPLVVPPLSALSDTPPRALAGRYQRVAWTELPNWESDDLSRWW
PLFLRNCKGLMRPTSGNLAAPARATPRAWQPVCAAAVDPSKAPAAGDSAAVRRFLQTWLQPWRIAGADGRPATNTVTGYY
EPLVRGSRRQGGRYQWPLYAVPADLLVVDLGSVYPDLTGKRVRGRLDGRRVVPYDTRAAIEAGDRKPPAIVWMDDPVDNF
FLQVQGSGRVQLTDGPDRGTTIRVAYADHNGQPYASIGRWLIDKGELRADQASMQNIRAWAQRNPSRVQEMLNANPAVVF
FREEAVVDPEQGPKGAYGIPLAPQRSIAVDAGFVPLGTPVYLSTTLPASDRPLQRTVFAQDTGTAIRGAARADFYWGYGE
EAGQQAGRMKQRGQMWLLWPKQAGEPSAR
>SEQF2266_AEE68431.1 ubiquinone biosynthesis hydroxylase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPQIVICGAGIVGLASALALARRGQRVAVLAPRAPVPAAEPDRYHPRVYAISPASQQFLAGLGVWDAMPAARLTPVQAM
EIHGDGDGLVRLNAWQAAQPQLAWIVESGEIERVLMQAVQMFGIPWIAERCVGWRAGEVETDGGQRLRAELFVGADGAAS
PLRKAAGLRHDATPYDDTGLVTHLDAERAHHGTAFQWFRDDGVLALLPMPDTADGPQVFMVWSMRTPQAQALQAMEPAVR
AAELERLLACASQGRLGRLRVRSPVLGFPLTLERAQMVAPGIALAGDAAHRLHPLAGQGLNLGLGDVEALACAVGDREPF
RGPGDLRVLRRYQRARAEPVLAMRMATDGLHRLFGARGAPLAWLRNAGMQWVDAVPFIKRQLIEGASRN
>SEQF2266_AEE68432.1 putative thiol:disulfide interchange protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGPSFSGAGMNFRITVWCAAAAVWSSGALAQDGAGQAAPGTPDKVYSTTGSAPAKPGDKVYSTRSAQAPDPQADAVKER
FAQRFEGFDVTAVRRTPYGLFEVQIGTDLLYTDEKVTWVMEGPLIDALTRRDVTRERQEKLSSVPFEELPLDLAVKQVKG
DGSRVMAVFEDPNCGYCKQLHRTLEDMDNITVYTFLYPILSPDSTTKVRDIWCASDPAKVWKDWMVRGQRPPTAECDAPV
DQWLALGRQLMVRGTPAIFFKSGGRVSGALPRDELEARL
>SEQF2266_AEE68433.1 putative 2-hydroxyacid dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAERYADWTTLGAQARVQVFRDALPSGPARAVALQPFDVIVAMRERTPFPAELIQALPALRLLVTTGMRNNAIDMQACAA
GGILVCGAPGSAEAGAATAELAWAHILALFKRLPQEDAAMRRGLWQTGMPQPLARRRLGVLGLGKLGSAVAQVGRAFGME
VVAWSPNLTDERAAQAGVTRVDKHTLFSTADVVSLHLILGESTRHIVDAAALSAMKPSAYLVNTSRAGLVDQDALLDALR
KGRLAGAGLDVYESEPLPPTDVWRTLDNVLLTPHLGYVNAENFQAFYANALEAVRAWAAGAPVHVLGGARG
>SEQF2266_AEE68434.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68435.1 hypothetical protein BPTD_3232 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLTASPTAARTPAEEKARFEGNKLAKRLARETTRAIADYNMIEAGDKVMVCLSGGKDSYALLDILLSLQKRAPFAFEII
AVNLDQKQPGFPPEILPDYLRALGVPFHIETQDTYSIVTRVIPEGKTMCSLCSRLRRGILYRVASELGATKIALGHHRDD
ILGTFFLNLFYGGKAKGMPPKLVSDDGRHTVIRPLVYVPESDLIAYAQFKQFPIIPCNLCGSQENLKRKEVGRMIQEWDR
KHPGRSWNVFNALSRVVPSHLMDRDLFDFVGLKPTGVADAGGDTAFDQIDPEPDTAGPGCASDAPAGQADGMAEQRVVFR
>SEQF2266_AEE68436.1 dihydroneopterin aldolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTRRIFISGLALDARIGILEHERRATQPLHIDAEFDIDIMRNVDDHDIHSVLDYRRLREAIVEECTQAHVNLIETLTEQ
VAARLLADFDEIRSLRLRISKPMAFSDCAAVGVEIQISR
>SEQF2266_AEE68437.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRQFYDAVIVGGGPAGASCAIWLARLGLAPLLVEAGERLGGLGNDNPFTDDWIAVLPDVTGQQVAANIAASVAAAGVPVW
LRAPATAVRPCKGGVEVQLGGAGQDTVYGKSLVIASGVRARGLPGHPQQARWPGVLIGPGSPIVAQDYAGLTVAVLGGGD
NAFENFVYVRNRGARQVDLYARTVRAQQQWVARAGTEGVRVGPYRVDPAARTVDGRAYDLILVFYGWEPQADFADSLGLE
RDSRGYLRTDFATAQTSLPDVYAIGEVADRMHPCVVTSLADGVTAAKAIQRRWERPAPPR
>SEQF2266_AEE68438.1 hypothetical protein BPTD_3235 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMNDTPVIYRLEPHDPAGHRYRITLTVAEPAPEGQRLALPAWIPGSYLIRDFSRQIETLAARAGGRPVAVNKVDNHTWQ
VAPCSGPLQVDYTVYAWDLSVRGAHLDESHGFFNGTSVFLRVDGQENAPCILDLAPPRGIEGWKVYTSLPEAQGLPGAAR
RHGFGRYRAPDYDALIDHPVEMGTPQVIGFQAHGAEHELVFTGVAPRLDLARIAADVQRICETQIAFFEPRSKQAPFLDS
ASRYVFMTMVTGDGYGGLEHRASTALMASRKDLPVLGQQGQGEGYRGFLGLVSHEYFHTWNVKRIKPAAFAPYDLERPDL
TRLLWVFEGFTSYYDDLLLLRSQTITRNDYLRLLGKTISGVARAPGRHKQSVAESSFDAWTRYYKQDENSPNALVSYYTK
GSLVALGLDLLIRRDSGGVHSLDDVMRLLWRRYGRDFYRGRPQGLAEDALPTLIREATGVDARRFIARHAHGTADVPLAE
MLAPHGISLTWQAGANIPTLDVRTRKQGEALALATVYEGGAAHKGGLSAGDVLVAIDGLRVDAPAGLDVLLSQYHPGDRV
TVHVFRRDELRSFQVRLAAPAPLDCVLAAA
>SEQF2266_AEE68439.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFMRISYISYSDRRQSMSESFVLVETRGRVGWLTLNRPKALNALNDQLMEELGAALLALDADDGIGAIVITGSEKAFAA
GADIGAMKDWSYMDVYRSDYITRNWETIKRVRKPVIAAVAGYALGGGCELAMMCDIVIAADSARFGQPEIKLGVIPGAGG
TQRLPRAVGKAKAMDLALTARMMDAAEAERAGLVSRVVPADRLADEALEAATVIASMSLPSVMMAKECINRAYEVPLNDG
LLFERRVFHSLFATEDQKEGMAAFTEKRKPDFKHR
>SEQF2266_AEE68440.1 putative inner membrane ATP synthase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGLVAAAIAGVVAGTAAGLSALAGAGAYFLPNALFALRLLVNVVRAARPNPFAFLYGELLKLLMTALLLWLLSWLAQGWL
VWPAVLLGLVFTLKGYLLLLMLRKRS
>SEQF2266_AEE68441.1 F0F1 ATP synthase subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAPSGASPQSEYIQHHLVHLNNIGEKQSVIAQFNVINYDSLFWSILMGLLVVFCLWLAARRATAGVPGRFQGFIEMIVD
MVDDQAKSIVTNAKSRLFVAPLALTVFLWIILMNALDLLPVDLLPSIWRMTGLGAEHGDPLYYHRILPTADLNVPMGMSL
GVLLLMFYYGIKIKHPGGFVKELFTAPFHAHGLASLVLAPFNLLLNLIEYAAKSVSLGMRLFGNMFAGELIFMLIALLGG
AWTGFNGASIGLGIGHVLAGSVWAIFHILIVLLQAFIFMMLTLVYIGQAHEGH
>SEQF2266_AEE68442.1 F0F1 ATP synthase subunit C [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNVAFVALACGLIIGLGAIGACIGIALMGGKYLEASARQPELMNALQTKMFLLAGLIDAAFLIGVGIAMLFAFANPFVG
>SEQF2266_AEE68443.1 F0F1 ATP synthase subunit B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLNATIFFQMLVFFVLGWFTMKFVWPPLTKAIDERRQKIADGLAAAEKGKADLAQAQARVSLIEASAKSETHARIIEAE
KQAASMIEQARREAEAERARIVAQAAQDAAQEVQRAREALRDDVAALAVKGAEQILKREVDARAHAELLNQLKAQL
>SEQF2266_AEE68444.1 F0F1 ATP synthase subunit delta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAELSTVARPYAEALFGAARDDKAGLAVWADLVSEMAQVAANPDVREAMADPRLDDKQRSEVFTGLIKSQLPQAARNFIE
LLVKNDRLLLLPVIATQFVALKNRHEGTAQAEITSAFELSDAQVKELIAALELKFGLKLKPHVSVDQELIGGVRVAVGDQ
VLDTSVKAQLARLRDTLAA
>SEQF2266_AEE68445.1 F0F1 ATP synthase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQLNPSEISELLKSRIEGLGASTDVRTQGTVVSVTDGITRIHGLSDVMQGEMLEFPNNVFGVALNLERDSVGAVVLGDYT
GVSEGDQVKTTGRILEVPVGPELKGRVVNTLGDAIDGKGPINTTQTDIIEKVAPGVIARRSVSQPLQTGIKAIDSMVPIG
RGQRELIIGDRQTGKTAVAVDTIISQKGKGVTCVYVAIGQKASTINNVVRKLEEHGAMEYTIVVAAAASDSAAMQYMAAY
AGCTMGEYFRDRGEDALIVYDDLTKQAWAYRQVSLLLRRPPGREAYPGDVFYLHSRLLERAARVNEEYVEKFTNGAVKGK
TGSLTALPIIETQAGDVSAFVPTNVISITDGQIFLETDLFNAGVRPAINAGISVSRVGGAAQTKVIKKLSGGIRTDLAQY
RELAAFAQFASDLDDATRRQLERGKRVVELLKQPQYQPLQVWELAVSLYAVNNGYLDDVDVAQILAFEKSLKDHLKAKHA
ALIQRIEDTKELSKDDEAELAAAVQDFKKHGAF
>SEQF2266_AEE68446.1 F0F1 ATP synthase subunit gamma [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGIKEIRTKIKSVQNTRKITKAMEMVAASKMRKAQERMRAGRPYATKVREIAAHLMQANPEYSHPYLVEREVKAVGVVL
VTTDKGLCGGLNTNISRVTLSKLKEFEQRSIKVQATAFGNKGLGLLTRIGAKLVSQEVQLGDKPDLDRLLGAIKVQLDDY
LEGRIDALYVATTRFVNTMKQEPVFLRLLPLSNGLDDPFQSGVETLAKTAEIKSDYSWDYIYEPDAKSVIDDLLQRYVEG
LLYQAVAENMASEQSARMVAMKSASDNAKKVIGDLQLVYNKTRQAAITKEISEIVGGAAAV
>SEQF2266_AEE68447.1 F0F1 ATP synthase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNGTIVQCIGAVVDIQFPRDNMPKIYEALTLVDEGSSFAEKGLTLEVQQQLGDGVVRTIALGSSDGLRRGMQVAGTGAP
ISVPVGHGTLGRIMDVLGRPIDEAGPIASDEKRAIHQPAPRFDELSPSVELLETGIKVIDLVCPFAKGGKVGLFGGAGVG
KTVNMMELINNIAKQHSGLSVFAGVGERTREGNDFYHEMEESNVLDKVAMVFGQMNEPPGNRLRVALTGLTMAEKFRDEG
RDILFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKTGSITSIQAVYVPADDLTDPSPATTFQH
LDSTVVLSRDIAALGIYPAVDPLDSSSRQLDPQVVGEEHYQVARGVQQTLQRYKELRDIIAILGMDELSPEDKQAVARAR
KIQRFLSQPFYVAEVFTGSPGKYVSLAETIRGFKMIVDGECDALPEQAFYMVGTIDEAFEKAKKLQ
>SEQF2266_AEE68448.1 F0F1 ATP synthase subunit epsilon [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATLHVDVVSAEEAIFTGEAKFVVLPGEAGELGILPGHTPLISRIRPGTVKIVRADEGEENIFVAGGILEVQPGSVTVLA
DTAIRAADLDEARAVAAREKAEEALRNAKDKADIAVVEAELAMLAAQAVAARKLRQGRTH
>SEQF2266_AEE68449.1 hypothetical protein BPTD_3247 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRALLECAVLVMPDQPSWVGAWLAAVRGPEARLADRLRLHEYPLLSGGRDGLALGQAAMSLRRFDALLLPVQASTLGWAR
LVLAQASPALSTPVLVLVRDLTAPAIADLLHLGARDFLRVPACLEELRVRASRAWRAIPPPAAGARAAVPVPGAEPGGGP
GPDAPADPGEGGGYRLPGMPETADASAAAPCMLAQTRAPYAATLGDVRMAVQRELPFRQAKAQVVGRFERAYLRGALARH
GGNVAQAARAACKHRRAFWALMRKHGIDARPYREGVAGAWPYETAPPRDPADEA
>SEQF2266_AEE68450.1 uroporphyrinogen decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSVAPLKNDVFLRALLREPVPYTPIWLMRQAGRYLPEYNATRARAGSFMGLAQNPDYACEVTLQPLARYPLDAAILFSDI
LTVPHAMGLGLDFAPGEGPRFAHPVRDESDVAKLAVPDMDSLRYVFDAVRTIRRELDGRVPLIGFAGSPWTIACYMAEGR
GSDDYRLIKSMLYGRPDLLHRILEINAEATRHYLNAQIDAGAQAVMLFDSWGGVLADGLFQQFSLAYTRRVVEGLTRERE
GRRVPVIVFTKGGGQWLEEIAACGCDAVGLDWTVNLGAARRRVTDAVALQGNLDPMTLFGGAQAVRAEARRTLDAFGPVG
KGGHVFNLGHGISQYSPPEVVSELVDEVHTYSRALHAG
>SEQF2266_AEE68451.1 putative primosomal protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVALDVPLPGPFDYRSAAPLPLGARVIVPFGRRKLVGVVVEHPGQPSIDPAQVREVEQPLEDLPPMPADWMRLARFAAD
YYQRPLGEVMLPVLPPPLRKPSAYQGKRSGLGPVARLDARKPRAAAAVAAEPDQAPELNEAQREAVDTIGALSAFQPVLL
HGVTGSGKTEVYLHAAARVLQAGRQVLLMVPEINLTPQLEGALRARLEALVGPQGVAILHSGLADGERVQAWARAQRGQA
RLLLGTRMSIFAPLPELGLIVVDEEHDPSYKQQEGLRYSARDLAIWRARDLDIPVVLGSATPSLESWQHAERGRYLRLTL
PGRARASSLPEIRLIDTRRLQLKQGLSPQFIEAIGQRLERGEQSLVFLNRRGYAPVLHCASCAWVSHCPRCSTFTVLHRG
PGAGGYRLQCHHCGYQAPVPRACPECGDQDLEPMGRGTQRIEEQLAEWFPQARIARIDADSTRRKGSAQALFAAVHAGEV
DIMVGTQMVAKGHDFARLGLVGVLNADSMLFAHDFRAPERLFAQLMQVAGRAGRHAAGAQVLIQTGYPEQPVYQALLRHD
YAGFARHALQEREDTGLPPFAYQALLTAEARELTVAQGFLQRARDLATGEPWPGVDAITLYDPVPLRVVRVAHVERAQLL
IESTSRPALQGFLTAWAACLPQLAVEARVRWQLEVDPLEI
>SEQF2266_AEE68452.1 ATP-dependent DNA helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASDTSIGSGLNPSQKEAVLYLDGPCLVLAGAGSGKTRVITQKMAYLLRECGYMGRNIVALTFTNKAAREMAERVKTLV
DPKLAKGLTISTFHALGVRLLREEAAHAGLKPQFSILDADDAMSIIQELLATTDRGRLREVQSIISLWKNALLTPDQAAA
AAITPTEVEAVTVYRGYAATLAAYQAVDFDDLIRIPAELLERNKEVRTRWQNRVRYLLVDEYQDTNVCQYRLVQLLTGVR
AMFTAVGDDDQAIYAWRGATIENLAKLTTDYPNLKLIKLEQNYRSVQRILAAANNVIERNPKLFEKKLWSDLGHGEPIIV
SPMNGDEHEAESIAMKVSAARFERQAQWKDFAILYRSNHQSRVLEQALRNLKIPYTISGGQSFFDKAEVRDILAYLRLVA
NDEDDPAFIRAATTPKRGIGQGTLQTLGQYAAQRQCSLLAAVDEAGLESLLAPRQLEPLRTFAEFVRRIQWRAGRGVEGQ
PARAPEPAGQILDDLLSAIQYERYLYDMLEERPAQTRWQNVLELTGWLKRKAEEDGMTLFDLVQHVALVTMLERGEEEEP
DAVKLSTLHASKGLEYPHVYLAGVEEGLLPHLGKDDEDSGDPARAAETLATRIQEERRLMYVGITRAQRSLNLSWCKKRR
RAREDVVREPSRFIEEMGLGDAKVQEDEATRAMSPKERLGMLKALLKKD
>SEQF2266_AEE68453.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE68454.1 putative peptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTTLPDTDQLVAGIQSWIQCESPSNSPAGVTAMAHLAAEYARAVGLAVEIRPLNAEVGPLVHATNRAAGDTRPGVLILG
HIDTVHPIGTLQDNPCRIDGDRLYGPGSYDMKAGIYLALSALRGLPSPDATALPVDFLLVPDEETGSHASREHIEHYAAR
AKYALVCEPARPNGGKCVTARKGTGMLRLNVKGRPAHAGMQHEKGRSAIREMAHQVLELESMTDYERGITVSVGTIAGGT
VTNTVPAQCRCVVDFRVPDMGATEDVLRRMRNLCSVGPDMELDIDVELNRPPMVKTEAASALLQLAQDFAAQAGFALEDA
PMTGGGSDANFTSAMGVPTLDGLGADGDGAHTLNEYILVSTLAARMRFWELLLKELH
>SEQF2266_AEE68455.1 hypothetical protein BPTD_3253 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPADLTNADRIALELGHAGRNAIPYLDDDRNADRPFTLNTYRPYGYTPDRPVVVVQHGVLRNGADYRDFWIPAADRHKL
LIVAPTFSDEIWPGVESYNNGRAFTAAGNPRHVDGWTYALVARVLANIRAAEIADCEQVYLFGHSAGGQFVHRLMSSQPH
APFHAVTAANPGWYTLPTFEHRFPEGLDGVGLTEDHLARLLAYPMTILAGDQDIATDDPNLPSEPAALRQGPHRYARARH
YYEAGRRAAAQRGLPFGWQLQVVPGIGHDGQAMSQVCASLWFDGRMPDAAELARLAGSQSA
>SEQF2266_AEE68456.1 putative binding-protein-dependent transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MANPPSNGRTRTVHPLSETPRRAQILKKLHSRPTVRGSVIALLALVALILLAPYFAPQNPYDLASLNLLDGRLPPRSPTM
DGGFYWLGTDDQGRDMFSAILYGLRISLLVGLTAVVLATAIGSLVGLLAAYAGGVIDAVLMRIVDFILGFPTILVALVLL
AMMGRGVDKVILALVVVQWAHYARIMRGRALQERRKEYVEAAANLGFPAWRIMLFHLLPNCMAPVMVFATIQIANAIVLE
ATLSFLGVGVPVTEPSLGLLIANGFQYLLSGDYWINLFPGLALLLLILSINIVGDRLRESLDPRRA
>SEQF2266_AEE68457.1 putative binding-protein-dependent transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALFILRRLIQSLFVLLAVSVVVFFAVYAVGDPIELLVSPEASAEARQAMIARLGLDLPVWQQYGNFLWRALHGDLGNSF
VHGIPAISLILQRIPATFELVLVAIVLTCTIGIPLGLVAGLHRDRPLGRGIMATSVLGFSLPNFWQGMMLILLFSVWLGW
LPASGRGDTANLFGVPLSILTLDGWSHVIMPAINLAVANVALVLRLTASGVVEAQSQEYVKFARAKGIKPGRIVRRHILR
NILIPVVTVIGMEFGHLIAYSTITETVFAWPGMGKLLIDSVYQLDRPVVVAYVMLVTLIFVVINLVVDILYAALDPRVQL
VAPAQ
>SEQF2266_AEE68458.1 hypothetical protein BPTD_3257 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRPYAFQRAVVVTPIQFEPLSGVAMSPPPAVAAVRPFELACPRLDAERVGNGATPGVWHFDAGLPGRHVLLTALIHGNE
LCGAWALKDALAAGLRPRRGKLTLAFCNLAAFDRFDPLNYAPARFVDEDMNRVWSADKLASPDTQERRRARALLPWVEQA
DWLLDFHSMSNADEPLQLTGTQPRNIELALKLGNPAHLVADAGHAAGVRLRDYGRFGAEGENGTRSLLIECGFHGAPTVA
RDILARFLLEAGTLAADDIPPGWLADAAPRQRALRVTHAVAARSADFRFAQPWQGLERIARAGTVIGWSDGEPVATPYDD
CVLIMPSLANLRPGVTVVRLAQPI
>SEQF2266_AEE68459.1 hypothetical protein BPTD_3259 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDLTLSHNARLTDSLERELLRGAMEDQSNTIRPLAAVKAAAVGVGRGVRAVFAFIDEVNESMNRARAQSAHYTGSQW
>SEQF2266_AEE68460.1 hypothetical protein BPTD_3260 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTPTSSSLPAIERQHLPALFAARPTDAHKGSCGTLGVIGGGPGMVGAALLAARAGLKVGAGKVLVGLVADTPPLPCDPM
QPELMLRDFRGLLEAGLGIDAWTAGCGCGMDALAANALSELFQLRGDAALVLDADGLNLLAAGAVQARWGDAPVVLTPHP
AEAGRLLGLSTEAVQADRPGAARALAARYGAWIVLKGAGSIVCDPAGACRINRTGNPGLATAGTGDVLAGILGSLLAQRI
APEQAVPGAVWLHGAAADALVTHGVGPIGLTAGELADSARRLRNSRA
>SEQF2266_AEE68461.1 enoyl-CoA hydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSETDTNPEHYARYRALRIRRHPEGILELVMGAKDASGKLSTADERLHRELADVWRDIDTDDQTRVVVIRGEGNGFSGGG
DLGLVQQMAEDFEVRTRVWREARDLVYNIINCNKPIVSAMHGAAVGAGLVAGLLADISIAARDARIIDGHTRLGVAAGDH
AAIVWPLLCGMAKAKYYLLLCDAVSGEEAERIGLVSLCVDRAELLSKAFEVAGRLAAGSQTAIRWTKYALNNWLRMAGPS
FDTSLALEFMGFAGPDVHEGIKSLREKRAPDFR
>SEQF2266_AEE68462.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSLLTERDAAVLTLTINRPERRNALDTATYDALAAQLRAADADTGLAAVILTGAGDHFTAGNDLRDFQAERAAGDSPAL
RFLRALVDTDVPVLAAVEGHAVGVGVTLLQHCDFAFAAGTARLRMPFVALGLCPEGASSLLLPRLAGMRKAAEWLLQGRA
FDAAEAHAAGLLTGVTEPGQALAAARAVAADLAAQPRQALRVSKRMLRQADRAAIHATLDHEAEQFRERLRSPEAQQAFA
RFFNK
>SEQF2266_AEE68463.1 hypothetical protein BPTD_3263 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNARDTAMPHPVVAELYASMTLPVVCSPMFIVSNPKLAIAQCVSGVMGSFPALNARPQSLLGDWLDEVEAGLAEHRRAHP
DGIVAPYAVNQIIHQSNDRLEHDLDVCARHRVPYIITSLRAPGDLVAGVHAWGGKVFHDVTTVRHAEKALEAGVDGLILV
CAGAGGHAGTLSPFALVSEVRRFYDGPLVLSGAITSGQGILAALATGADFAYMGTRFIATAEANASEAYKQAIVDASASD
VLYTPFFTGIPGNYLKASIVAAGLDPADLPAAEAASSNFGTTRAKPWKDIWGAGQGVGGIASVLPARELVASLRAEYAQA
QARLGARNLG
>SEQF2266_AEE68464.1 TetR family transcriptional repressor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADAPAPAPKRARAGRPPTLAAPRERILEEAARLFARSGYENSSVADLAAAIGVSKAALYHYFPTKQDIYDAIILETLAG
LLQAVTREVERQHEACERLRAFMVGHARYFARHHEQFVTMLIGYSGMALPERADAAQLRDRYEQLLRDLLEQGMAAGTLR
RLDVAATGRAVLSMLNWMVRWYKPGQGDSAEQIADGYYDLLFNGLRI
>SEQF2266_AEE68465.1 putative acyl-CoA dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALDNETLNLLLDAVRRFVNDRLVPAENELAETGRIPDEIVQEMRDLGLFGLSIAADYGGLGLTMEEEVRVVFELGQTSP
AFRSLAGTNIGIGSQSIVLAGTDDQRQRFLPKLASGELIGSFALTEPDAGSDAMALRTSAVRDGDHYVLNGTKRFITNAP
VAGLFSVMARTAPERRADSISCFLVEAGTPGVTLGKPDKKMGQAGALTCDVVFDNCRVPAEALLGGKEGTGFRTSMRVLD
KGRLHIAALCVGIAERLVRDAVRYALERKQFGQPIAEFQLVQAMIADSQTELYAARSMVLDAARKRDLGQNVTMEAACSK
LYATEMVGRVADRAVQIHGGAGYISEYAVERFYRDVRLFRIFEGTSQIQQLVIARETLKAYA
>SEQF2266_AEE68466.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQVPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHT
>SEQF2266_AEE68467.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFA
QQRRQRLPLWRIAREAGRSLATVARYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQN
RNRGIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSGYVSRTFRAVCVELGIRHI
RTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWYRPHSALGHQPPITRIPDVNNLLRIDS
>SEQF2266_AEE68468.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68469.1 putative blue copper protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQSDQRGSNMRARVYAVRMAAAACGISFGAAASGAHGGGHGGGHGAATAGATAIGKPGVASKASRTVNVDMTDAMRFTP
DQIEVKAGETVRFKVTNSGKIRHEMVLDTDADLGAHYQMMLKDPGMRHEEPNSVSLDAGKSGEIVWQFDKAGRVAFGCLE
PGHYPAGMKGAVSVK
>SEQF2266_AEE68470.1 copper resitance protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRAVSNQRRRFVQGLAGGGVLAGLGLWRQAAWAQPGAAQPEVLSGTEFNLEIGRTPANFTGAARMATTVNGSIPAPILR
WREGDTVTLRVTNRLDEDTSIHWHGILLPTGMDGVPGLSFPGIRPGETFTYRFQVRQSGTYWYHSHSGFQEQTGLYGAIV
IEPRRADPVRAERDHVVLLSDWTDEDPMSVFRKLKVMPDYYNYIQPTVDNLIDDARKQGWASTLGERLMWQQMRMNQTDL
ADVSGATYTYLANGKSPAGNWTGLFKPGERVRLRFINGSAMTYFDVRIPGLKMTVVAADGLPVRPVEVDEFRIAVAETYD
VIVEPAEDRAYTIFSQAMDRSGYARATLAPREGMQAEVPALDPVQVLTMMDMGMAHDMPGMDHGAAGQQGAAMDHGAMGG
MDHAAMGHGSSEASGGMVEVRHPYPAEHGPANSMLPDIVTTRLDDPGVGLRDNGRKVLTYADLRSMVEPEDNRAPTREIE
LHLTGNMDRYMWSFNGLKFSQAKPIVLKYGERVRFVLVNDTMMTYPIHLHGLWSDLESPDGNFQVRKHTISLNPAQRISY
RVSADARGNWAYHCHLLYHMEAGMFRAVVVE
>SEQF2266_AEE68471.1 copper resistance protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNFSIDRKRLAGMAASLGLAAAAAAASAWAQAPAMDHGSMPGMDHGAAPAPAIGALPSSDGAGDQSYAAYGIHSHMMDD
MVTSQLLFDKLGMTYDRDRRTGLQWDGQFWVGRDLDKLWIKSEGERVGGRSDGKVEAFWNRTISPFWDLQVGARRDFGTG
PKRNWGAIGLQGVAPYNIETEVTAYVGGSGRTALALKAEYDLLLTQRLVLTPEIEASVYGKDDKARGIGAGLSDASFSLR
LRYEITREVAPYVGVSFGRKFGKTASYASEEGESRSERAIMAGVRIWF
>SEQF2266_AEE68472.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASLPLTITRQPAAWTFTLSRPEKRNALSAELVEALIDGVDAAHREQVPLLVFAGAGRNFSAGFDFTDYETQSEGDLLL
RMVRIEMLLQRVAGSPSLTLALAHGRNFGAGVDLFAACKWRYCTPEAGFRMPGLKFGLVLGTRRFRDIVGADQALSILGS
ARAFDADEARRIGFVRDCAAQAQWPALIDAAAEAATALDPATRATLHRVLRDDHDDADLAALARSAAQPGFKARIRDYLA
Q
>SEQF2266_AEE68473.1 IclR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRCKGIRHMDKTLLKGLTVLEAISRLDGATPTLDQIAEEIGLTRSNTHRTLQTLAHAGYVRRDPATGSYQCTLKLFELGA
RQLASLDARKLAPPFMDELARLTNETVHLSVLDGLDVVYVDKLDSPQPLLAYSTVGGRAPAYAVATGKALLACQTADYLD
HYGAAIKRHTEDTHVSLLALKQELADVNRIGYAINRGEWRQGIGGIAAPIFNGLDKAVAALGISGPLERLTNQKMREYAP
LVQQAARQLSAHMGYRGGYFGGAA
>SEQF2266_AEE68474.1 hypothetical protein BPTD_3277 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSERLLNTVVALGQLVERTGLQEAAILAQARQLIAGLVAHDDWLPDEMAQPHPEYYRQYLLYGDPRDRYSLVSFVWGPGQ
KTPVHDHTVWGVIGMLRGAETDQPFRRAADGRLAPEGPGKVLRPGDVACVSPSIGDIHQVSNAYDDRVSISIHLYGGNIG
RIRRSVYDPQTGASKAFVSGYSNAMTPNLWAAPNAG
>SEQF2266_AEE68475.1 putative amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTIAALASAYRTRQTTPSATLRDLLDRIAASPLNSFISVDPETVMRQAADADAAFAGGAPAGALHGIPVAVKDLIDVAG
MRTTMGSQQYANQASAERDAQVVARLRAEGAIIVGKTNTHEFAYGPTGDRSYFGAACNPRDPARMTGGSSSGSAAALGAG
LCAAALGTDTSASIRLPAALCGVVGLKPTYDLLPRAGAFDLSQTLDHVGPMSATVRDNAVLLDALAGQPAHSYARLAGQS
VRGRTVGLATGFYLDYLDAPVRQALEQAQEAFRQAGAQVVPIEIAQVQAIYEAQQLVLKTEAYARHLRALTTNAPYQDEV
RARLLTGADVLAVDYLQAMAMRTVARRAFDEALAQVDVLLCPTCGLTAPLRDQRTTALDGQEYSTTWLLTRLTAPTNLSG
HPSLSVPFGADSQGLPISMQLIGRHLDEAVLYQFGQALEDAA
>SEQF2266_AEE68476.1 putative binding-protein-dependent transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIAFAPRTLAVASIAATVALAGCGQKEEQAAAGATPLRIGIIESVTGPAASYGDAHNKGTRLAVEEINKAGGFNGVPLEV
HGEDDKSDPATSINAAKKLITQRKVDAIVGSAASLVTIAFSKENEKYKVPLVNGMAGSPIITEQGFQYTWRIKITDNQLD
TKAIEHYVQNKNARKVAFLAENSDYGKPPTKAAADRARELGAEVVAYEEYNRGETDFKAQLTNIRDRAPDVLFVHGYYTE
GSIIARQIRELGLKTQLIVNEGQGVPKFQELAGAAAEGAVFPTTWLPGLSDARSKQFETAYQARYNSLPGAFDAGSYEAV
YTVVEAARKGGGTKPEQIQAGLAQLQGFETLLGPVRFDKKNQNDGSIRLARFNNGKIEPLQ
>SEQF2266_AEE68477.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68478.1 pterin-4-alpha-carbinolamine dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPAGGRGRGEFAMSTEFPMRIGAEVALPALQGWNAAAGRDAIEKRYRFDNFNAAFGFMARVAMFAEKMDHHPEWRNVYNR
VDVTLTTHDAGGVTELDVRMAQFMDEAAGRLGATGLPARADQPRT
>SEQF2266_AEE68479.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFGRSQRQVFKPSVYQPGKRTRRMPRWLVLLLVGIALGAGGVLFLQTNYGPQRLTVEQSEQLHTELSAANLERQRLQTQ
LDEAIGQRDANKSTHEQLTTDLAQARTRIDTLNQELLLFQDAMPPDPRGGDIGVRSAVFKRQPGQLSYQVLIMRENHAGP
AFKGNVTLAIEGNYANGRRGTLTPDPLALDLQRYNNTQGVLPLPDGFTPRSVTIRVLDGQQKQHAMRIYYVRG
>SEQF2266_AEE68480.1 putative nucleotidyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAMILAAGRGERMRPLTDTTPKPLLAVGGKPLIVWHIERLVAAGLRDIVINHAWLGQRIVDHLGDGGAYGARLHYSAEA
AALETAGGIAQALPLLGDAPFLVINGDIWCDWDPAQARRQAAALDAAGAQAWLLLVDNPPQHPQGDFRLEDDGRVADDGA
PKLTFAGIGLYRPALFDPVARGSAAPLAPLLRQAMARRAVIGARHAGRWTDVGTPQRLAALDGQLRPEGT
>SEQF2266_AEE68481.1 hypothetical protein BPTD_3285 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGTSLPIRGRRDPETIETRCLNNDQDSRLALIHAWLQTLPGSLGLRPETMEPASSDASFRRYFRLQAAAGTLIVMDAPP
PHEDVRPFVHIDGLLREAGVNVPEIVAQDAGQGLLLLSDLGQDTFYQRIRAGISDAQLQSMYRDTLATLVRLQQASTAGL
PAYDGARLAAELELFPEWYVGRHHGVTLDDKTAAALRQIFGLLAAEGDTGHRVLVHRDFHSPNLMVCDEPRYGPNPGVID
FQDALAGPLTYDLASLVTDARTTWEEPQQLDWAIRYWELARAAGLPVDADFAQFHRAYEWMGLQRNLRILGVFARLNHRD
GKSIYLSHMPRVSGYVRQVAQRYGAFAPLLRLLDKLDDRQVQVGYTF
>SEQF2266_AEE68482.1 putative outer membrane (permeability) protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMLRWLILSAFSVAGAVQAQGNQDSAAASAPSASIGAPVLRTSPGLRVHRLPDEKIPAFMEADQISGDPDSEVTLTGNA
QVRRVDGIIKGDRINYRRDTGDVDVQGSARMLRDGTLITGPSARLNVDTYSGEIQEPNFWIGASGGTAQARHADIFSKSQ
MRLSQVTYSGCPCPKPSWYIKADTVDLDFDENEGVARNGVLYFKDVPILASPYLTFPVKKERKSGFLMPTYGTTSNSGFD
ISLPYYFNLAPNYDLTLVPRYLSKRGAQLGGEFRYLGSGYRGVAIGTYLPDDNETGRDRWMYRTYHRQLLGNGFYTDWDI
AGASDDNYFRDISELGLNTASTTYLPRRGRVGWSSTYWQTYAQVYKYQTLQDPDAPLAPPYDKVPELWLKGARYDWGGFD
AEWVSTAVRFQRSLLNGRRLGPDGDRLQTYPTVSYPIGRPGWFLVPKVGVHYTQYRTDWYNRDWNRIGLSNYKRTESRTV
PIMSLDAGMIFERDASLFGKAATQTLEPRLYYLRVPYRDQSALPVYDTTLADFSFDQAFQENIYTGGWDRIANANQLTAA
LTTRWLDANTGFERLSLSAAQRIYFQDQEVTLPAEQPRKNVRSDFLVGATAALTDTLITDVAAQYNPYDNKWSRGMVSAR
WSPQRLTTVAVAYRYQRDPLPGISYQPQGQNQVSLAVQWPIHRRWYGVGRVDYSLRSEPATAAAAEQSPRVTQAIAGLEY
KGDCCWVGRVVYQRYAVSAADTNTALFFQLELTGLGALGTDPISLLNRSIPGYQSVVPPTPTGTTFERYE
>SEQF2266_AEE68483.1 putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMRSLHSLRRMSGTVLALMLAAGLPLSAAQAQPAKPAPKGDQKPATPAPSEQFVDGIAAIVNKDVITLREVREASKLASA
DLQKRGIQVPDERTLQKQVLQRLIMERLERQEADRMGIRVDEAQVDQAINMIASRNKITPAAMRAEIEKSGVTWEQYRKS
LRDDIRMDRLRQRAVDANIIISDAEVDAFLKDQERNPAAAQATRAPAPQQPQPQPRQPAQSGPAMLVLAQILVRVPEGSS
PDQVAALRKKAEGLLARAKKGDDFASLAAANSDGPEALQGGMMGARPLDGWPDLFVKAAGSLSAGQVSGLVQSGNGFHIL
KVVDRAGGGQPAQAARPAPAPAPQQPSSFQEGPSVAAPQGPVRVTQTHARHILIKTSTVMTDDQARQRLEQIRERLQGGA
VKFEDMARQYSQDSTAPQGGDLGWVNPGDTVPPFEAAMNALQPNEISPPMLSPFGWHLIQVLERREHDVSDEVQRMRARQ
LLFERRAVPAFEDWLEQLRSQAFIDNRLEKQERLEQNNR
>SEQF2266_AEE68484.1 dimethyladenosine transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAHQARKRFGQHFLTDESVVESIVRAIGPARDDRVVEIGPGLSALTRPLLDRIDHLTAVEIDRDLAARLRRQYPAERLT
VVEADALTVDFAQFGQGLRVVGNLPYNISSPLLFHLMGAAEQVRDQHFMLQREVIDRMVAEPGSGDYSRLSVMLQARYRM
EKLFDVAPEAFDPPPRVVSAVVRMAPLPADRLRPASDAAFETVVARAFSQRRKMLRRVLDDWAALTPWDELGIAPTARAE
EVGVAQFIGLADALLAAGAPGLARP
>SEQF2266_AEE68485.1 glycerate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIVIAPDSFKESLSAPDAAAAIARGVRQACPGAHTLCIPMADGGEGTVQAVLAATGGQWRETTVRGALGEPVRARWGWL
PDDATAVIEMAAAAGLELAPPAQRDPLRACSHGVGELIRAALDAGARRLIVGLGGSATNDGGAGMLTALGVRWLDADGRA
LAPGGAALADVRQVDASGLDARLRGVVVEIASDVDNPLCGPHGASHTFGPQKGATPEQVRQLDAALAHMAEIVTRAGHPD
QRAAPGADAAGGLGYAALAFLSARLRPGVEIVAELGQLAQAVAGATLVFTGEGRIDAQTLRGKTPAGVARIASAAGVPVV
ALAGSLGEGYQDLHAGGITAAFSLAPGPITLQQACEQAETLLAERARDIMQLWVAAGRRML
>SEQF2266_AEE68486.1 pyruvate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFSSERAYMPVLRRTKIVATLGPATSTPERLDGLIRAGMDVARLNFSHGSAQDHRERVRLVRELAAEQGRFVALMGDLQG
PKIRIARFTDQQVTLQAGQPFTLSRSHSKEAGDATIVGIDYPELVQDCRPGDELLLDDGRVVLVVDSVGAEEVHTTVTVG
GPLSNNKGINRRGGGLSAPSLTDKDRTDIKLAAEMELDYVAVSFPRYGADIDEARALLRAAGSQAWIIAKIERAEAVADD
DALDALIRASDGVMVARGDLGVEVGDAELVGIQKRIIQHARTLNKVVITATQMMESMVASPMPTRAEVSDVANAVLDYTD
AVMLSAESASGQYPIEAVAAMARVCLGAEKHPTTTHSHHRLGETFTRCDETIALAAMYAANHFPGVKAIIALTESGHTPL
IMSRIRSGVPIYCYSPHGPTQRRAALFRGVYTVPFAPAEYDPADLSNAAIDELKKRGRVAAGDWVILTKGDFYRDSGGTN
GLKILKVE
>SEQF2266_AEE68487.1 hypothetical protein BPTD_3291 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNKLWLAFFLTAAAAALYRWLGLGEPDVFQAMVVSLFDMARVSVEVMVLLFGTLTLWLGFLRIAEAAGLVERLASLLGP
LFARLMPEVPRGHPAIGLITLNFAANGLGLDNAATPIGLRAMRELQSLNPNPDTASNAQILFLVLNASSLTLLPVTLFMF
RAQQGAADPTLIFLPILLATSASTLAGLLAVAFCQRLRLHDPVVLAWLGSAALALGAFMVMLAGMSAAAIAALSSLLGNL
TLFAVLLAFLVAGAWKKVPVYETFIAGAKDGFNIARDLLPYLVAMLCAIGVLRASGALDFALDGMRWLAHAAGWDTRFVD
ALPTALVKPFSGSAARAMMLETMSHFGVDSFPALLAAVMQGSTETTFYVLAVYFGSVGIVRARHAVGCALAADLAGVLAS
IGVCYWFFG
>SEQF2266_AEE68488.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE68489.1 putative ABC transport ATP-binding subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAPGLAIEGLGVAYGARTVIAGLSLGPLPHGTLTALLGPNGSGKSTLLKAVAGLLPARGGAIALDGQRLDQADLAQRAQ
QVAYLPQGLPADVHLRVFESVLVAARAHGGEAAGQIGPPAIAALLERLGIGHLALQFLDELSGGQKQLVGLAQALIRRPR
VLLLDEPLSALDPNYQFHVMDLLCQETRDHGLITIAALHDINIALRHADQALLIRAGELAAAGEPAAVIDAPMLARVYGI
QARVERCSRGHPHVLVDGVAGPVR
>SEQF2266_AEE68490.1 putative ABC transport inner membrane permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAEAAPDAVRAYGRLLRRRRWLMAALAAAACAALAADAALGPAGLTLADLWRTLLQPGAADTAARVIVWDIRLPQAAMAA
IVGMALGLAGAEMQTILNNPLASPFTLGVSSAAALGASLAIVLHVGVPGVAAPWLVPLYAFLFAALAGLLLDQVARHRAI
GAPAIVLFGIALVFTFNALISLIQFTASAQALQNLVFWTMGSMARADWASVGILALACALALPLALRHAWRLTALRLGET
RAASFGVDVRRLRLAALCRISLLAALAVAFAGTIGFIGLVAPHIARRLFGEDHRFYLPGSALTGALILSLAASVSKSLVP
GVIVPVGIVTSLVGIPFFVAVLLRRPQSP
>SEQF2266_AEE68491.1 putative periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRDQALPLRTLVITASLALAAMAAPAHAFADDEARRAILDLRQQVQQQNEQNQRARLQLADQLQAMQQEIAQLRDQLELI
SRQQPNAQGGQPQHAGNPPGVTAVDQQEQAAYDGAIDLFRKGQYKDAAESLAAFIALYPNSQLAPTAQFYLGSSRYAMKD
FKGAIEQLNNLVQNAPTNARAPDALLVIAGSQIELNNRAGAKATLQRIVRDYPTTPAANTAKSRLQLLQ
>SEQF2266_AEE68492.1 putative peptidoglycan-associated lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSRIAKSLTIAALAATLAACSSVPLDDKAGQAGGSGQGSASGQILDPFNPQSILAQQRSVYFDFDSYTVSEQYRGLVET
HARYLASNNQQRIKIEGNTDERGGAEYNLALGQRRADAVRRMMTLLGVSDNQIETISFGKEKPKATGSSEADFAENRRAD
IVYQR
>SEQF2266_AEE68493.1 translocation protein TolB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPAFRRADLTGFLRTYGAALILLLAAMLAWQPAQAQLRVDISGTGATQYPVAIADFAVDDTHGRALAEVIRADLTRTGQ
FRLINAAGSGLNVDSQVAHDDWRAKGADFLAYGSITRGPDGRYDVRYRLADTVKKGQLDGVAFSGTEQELRRVAHQIADR
IYEKITGVRGVFSTRIAYVLKRGSTYELQVADADGQNPQVALRSREPIISPSWSPDGSRLAYVSFESGKPVVYVHTLATS
ARIPVANFKGNNSAPAWSPDGSQLAVALTRDGLSQIYIVSAGGGSNMRRITRSPGIDTEPNFTPDGRSIIFTSDRSGGPQ
IYQTGLDGGDARRLTFNGGYNISPRISPDGSTLLYVARRDGAFRIASLNLSSGSETLLTDGRDDQSPSFAPNGMQVLYAA
IQNGRSVLAGVSSDGRVRQTLSVLNGEIREPTWGPFTR
>SEQF2266_AEE68494.1 proline-rich inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPPLIRSDRSAPPSPATQDNRKALGLAVLVHLLLLLVLIFGVNWRSENPGPVQVELWADGDSPVNPPPDEVKPQPKPEP
QPEPEPQPQPEPEPEPEPPPPPPPPPPPQPEVQPKEQPDPEIALEEARKKREQEEKARQAAEAAKEKARLEEERRQAELK
EKQRLEQERRAAEKAAAEKAAAEKQAAEKKAKEEAAKKAAADKALRDAFRNDALGAAGIPGGTADRNQAGGGRDSGYGAK
VRACVQPGVAYPPPPRAGSANPTAQYRVQLGSDGKVNGVTLTSSSGNPGFDRAVETGIRRCNPFPKPSTGRYEPIIDVVY
RMYD
>SEQF2266_AEE68495.1 putative TolR-like translocation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSVRSNGRAGRRMKADINVVPYIDVMLVLLVIFMVTAPLITPGLIELPSVGQAADVPAKPLEVQISEDGKIALRMREPG
ATPQDIARTELVNQVRSRITAETPVVIAADGKVPYESVVKVMDELRSSGITRLGLLVDQGAGAETQQPARKR
>SEQF2266_AEE68496.1 putative TolQ-like translocation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQVTNDMSLLSLISHASVPVQLIMLLLLGISIMSWTYIFAKRLAIKRAHQQTRRFEDDFWSGGDLAMLQQAVATRRDEQG
ALARIFDAGMTEFLKARRTSAAGDVNAVLDGPRRAMRAAYQREMDSLESHLNFLASAGSVSPYIGLLGTVWGIMHAFIGL
SNMQQATLAAVAPGIAEALIATAIGLFAAIPAVVAYNRFTNDIDRLSIRFDSFVDEFLNILQRQVR
>SEQF2266_AEE68497.1 hypothetical protein BPTD_3304 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDPKFSESVLDIRVYYEDTDAGGVVFYANYLKFLERARTEWLRGLGVNQSDLAEREHRLFGVHSLDMSYRKPARLDDLI
TIRSRITRIGRASIHFAQRAERNGELLAQGNIQICCVDSIRMRPAELPDDIRAKLKFIQIQE
>SEQF2266_AEE68498.1 prolyl-tRNA synthetase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRASKYHLNTLKEAPAEAEIASHQLMTRAGMIRKLAGGIYTYMPLGLKVIRKIEGIVREEMNAAGAIELLMPVVQPAELW
MESGRWEQYGAELLRIKDRHQRDFVLQPTSEEVITDIARNEIQSYRQLPLNFYHIQTKFRDERRPRFGLMRGREFTMKDA
YSFDRDEAGAQRSYDIMYAAYQRIFQRLGLEFRAVAADTGSIGGSRSHEFQVIADTGEDLIVYNPESDYAANIELAEAPA
LLATRAAPGQDLEAVPTPGAAKCEDVAKLLDLPLARTIKSIVLAVDQPEGPAQVWLLLLRGDHELNEIKAGKLPGLAGFR
FATETEILDHFGCKPGYLGPIKTARPVHVVADRTVANMADFVCGANREDYHYQGANWGRDLPEPELVADLRNVVEGDPSP
DGKGALSIQRGIEVGHVFFLGTKYSEALKATFLDDNGKPAVLQMGCYGIGVTRIVGAAIEQNHDARGIIWPRAIAPYEVV
ICPVGWGKSETVRDTALALYEALRARGVDVMLDDRDSRPGVMFAEWELIGVPLRVTVGERGLNEGVVELQARREAEAAKV
PVDQALAQTLAKLDLL
>SEQF2266_AEE68499.1 dinucleoside polyphosphate hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGLKPEHVRILGRTRDWLRYNVP
DHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRATQHPEFDAWRWSQYWVPLDAVIEFKRDVYTQALNELAVILFRRHH
ETRYLRQRVHGPRSTDSPSSETDGHAHIAG
>SEQF2266_AEE68500.1 two component response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRILLVEDERDMAAWLMRALAQSGFTPDHAPDARTAEGLMVGNEYDAVVMDLRLPDKHGLVLLREMRNRDDRTPVLLLTA
QGALQDRVRGLNLGADDFLTKPFALEELEARLTALVRRSRGRQPPRLQCGSLSYDGESRAFTLDGALLFLTPREHAALAA
LLTRSGYPVDKSQLFGKVFTHESEANPDAIEVVLHRLRKKLTGSDVRIVTVRGLGYMLESTVSESSES
>SEQF2266_AEE68501.1 hypothetical protein BPTD_3308 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MCGRIAQKSAPEDYVEILWPNARLIFDDVAGPRYNIPPGTRPLTMHRLVDQAEALARLPWGYKPHGSRFFMVNAKLETIE
RHGWPWKLMIGVGRILVPADGWYEWRALDSGPKPAKQSYYIHGDAPLLFAGLSAWRRGAELDEAHGFAIVTNDALGGMVD
VHDRRPVALPPELAREWVDPATPVARAKEILRAGLPETAFSWYPVRQEVGSSKYQLPDAVDPL
>SEQF2266_AEE68502.1 phage-like hypothetical protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSWSRAYSARPGLHARRRAGGYYQGIIIEQLVKASRFQAGDRVLFGEDQVQAPATEADRARRPIRTPRRYRGW
>SEQF2266_AEE68503.1 hypothetical protein BPTD_3310 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPFRAPLTHDELRAIRERQPWNPDVLTLLWEVKRLRSMMLRAYQLSGEFHRPVGVLANCYDEYMAQLVVEPCVLERDADV
AEMLNAPAQPRKG
>SEQF2266_AEE68504.1 hypothetical protein BPTD_3311 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGAWRRSAVVALLSAALAAGAAWTAQGWRKDAAIARQAAAFALERDRQAQATVAALEAVREEGRRRTAAVEKARDDAQEL
AAAAAANAVGARAERDRLRTHANALARAAVARDPDAADGSPTGASAIDLLAYMLSRVSGRAEALAGVADRARIAGLTCER
AYEAVRGNVRP
>SEQF2266_AEE68505.1 putative phage lysozyme [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRPGRRIKGGVAALVASGVLVLASVRLMDFLGRWEGQGQQVVYADRLARGLPTMCKGVTKHTSPYPVVVGDYWSPERCAE
VERMVVSKGQLQLARCINVAISQPIFDALSSHAHNFGVPSTCASRAVGLINAGRLAEGCNALANAPDGAPVWSYVTDQRG
RKRFVQGLRNRRLEERALCLSGL
>SEQF2266_AEE68506.1 hypothetical protein BPTD_3313 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEPQPIVDKVAANVTYVGSGWAVIFGLSANEFAALVGAAVAVVGLLVNLWFKWQHLRIARTVAATRKQHEDEESCDLEEE
>SEQF2266_AEE68507.1 hypothetical protein BPTD_3314 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGVGVCLWADSTLQSGGHASRLLLDGKPFDTRAPLSLGTQARISGGRGDESLSGPLAGGPARRVKGYLPALPDGKLVAR
FSSVAELTGVSDAWMGGTSVGSGRRAQVFHFRKIDDQKEVQLQIVAGQYTKAVKVRFYDDRDGIKAGVMYARYVEGSQLG
LDFDIIEARSQEIATAESEIGYGCAAISLVGIQEYVFLTYALDSDVILTVSGANTYIGTTTVESGTVRIGHPLAFGRNGL
IKVRAGAALDKHGYALPHRMIVNDGATVLE
>SEQF2266_AEE68508.1 hypothetical protein BPTD_3315 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKDRFILYQPSLGGPVNSAFAVTPSDTQDLREVTRALYLGAAGSMRVRFADGTEHTYAALAAGRHPLRVVRVFSTGTTAT
DITGEV
>SEQF2266_AEE68509.1 hypothetical protein BPTD_3316 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGFVKPRMGNFVMYDQIGRIHQATKGQAHRTQADARSMGLQVLEVDDLYSPDHYMVVDGKVVPRPASPITRRGLVLSGV
PATPEAPADLMIGQDGYYEVTDSRVELEFGEEGTHQITVKRWPYKDWVGTIEHAEDQL
>SEQF2266_AEE68510.1 hypothetical protein BPTD_3317 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDITIRRDPFRPHLRQETVVARQGTRLDTILRREGFIVGRAARLARTSPFIVQRNGRWLLQAAWHVRLKKNDVVVVVVL
PAGGGGSNPLQVVAMVVLAAATAGVGAWATSAYAGAAGVGATSAAALTVGAGAATAVGPVGGMVVNSLFPPARLPGTLQR
EKASPTYTLSAQGNMARPMEAIPVRYGRYRSYLDFAAQPYTEMVNNQTHLYQLFCVGQGRYEIEEIRIEETPIGNFSEVE
YEVVEPGGQVTLFPDNVVTSAEVQGIELPAINVEGAGPKGPFAANPPGTLASEIAIDVLLPKELFYAAHDGTLESAGTGV
NVYARQIDDSGRPIGTTILLGKENIVAATLTPQYRTFRYKVEPARWEVSVERNSGHLAERATRMIRDVTWLGLRSYLPSK
RTYGNVTMLAVAMRATGNLNQTTARRINIIATRRLRTWDPVQGWSKDLKPTRNPAWAIADACTDREYGRGLPDSRINLAA
LYRLAKVWDERGDWFDGVFDVSTTFWEAVTQVARAGRALPIYHAGVIDVIRDEPKSVRTQMFTPANIVARSFSVDYVFPA
HDDPDYIIVEFVNERTWKDDEVECAWPGAAKRRPYRLRLVGVTGRVQAWREGMALLARNRDQRRFASFQTELEGAIPGYA
DLVEISHDVPKWGLSGIVEDYDPRALRLTTSEPLQWWQGQNHYISLRGRDGVPAGPFRVEPGTHEREMRIVDLVDGQGLY
VSTGEAEEPTHYTFGPGERRALLAQVMRAVPSEAGLWTLDVVNYAPSVHTAELGGQEPEFASPSLLPIVPLGPIVDSVTV
FSGPRPGQQIVSATPASGAYRYEFEASDDGGVHWQPLGMAELPSLEVYLRAGSWQVRVRGIGALSGPWKTWQGNVSASAA
PPPKLSALTTISQVMAIELAWTVPDAPWMSSVEIWESSTPNLGDASLMGEFRLPQSRFTRFGLSHGTRIWFWGRIRDVAG
QLGPWYPDGQGVLGSASSDAGKILDYLSGQIGPEQLTRDLTQTISGMERNINTVTAKLDQEREERLSQDGALARRVEDAI
AANGAGATAVKQTSAALASLDGRLRATWSVQAQVAQDGKVYAAGMALGAYAGEGGQVQTSVYFLADRFAFLNLANGKVSS
PFVIQNGQTFLNQAFIGKAWIKSAQVESLDVGKIVAGVMSADRINANSLIAKLASFTTAYVKTAHIGVAQVDTLRLASGA
VVTGSHSIISKSLWRGGSELATVAIGSLYLPYGGSVVVFMQYAQSGGRFPFGRNTIVSIDGEIIPNALSNPPDGVAMITW
ISDTLPEGKTISWSIKARHPVDGTYYISGRVAVLAIQR
>SEQF2266_AEE68511.1 hypothetical protein BPTD_3318 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSDDVNRYIGLAWQFGARGPGAYDCWGLLRECREHYFGGGIPDTVFGEQARALYAEKMRTGGWEIVMQPEHGDGVLLRA
GNDPHVGIYLDLDGGGVLHAMEGRGVIFSPMRALVTMGFSQPTFYRIHA
>SEQF2266_AEE68512.1 hypothetical protein BPTD_3319 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLEKALKEAYASAPQDRVVFDTLELRHPAFVDEHGERTAVRVVLGYEDIYARLEAEAPLDGGKEVLFQAGAFRLRLPGF
EEGQVPSLLITIDGASEKIVDHVEAAVQSRYPIYATYRPYVSTDLSRPQMNPPITMELNKVTVTGASVSGTATLADVHNW
AFPHQRYMRERFPGLFR
>SEQF2266_AEE68513.1 hypothetical protein BPTD_3320 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTLPHWPAGLPLVEFSRQPISPFQRTEMENGRARHRRHTRVHPVHAHVSFVLDREQYDVYQRFCSIDLNGYAGWFLMAMN
GPGGLKLRKVRWLLPVPREERIPGDLWRVSGELESMSDE
>SEQF2266_AEE68514.1 putative phage tail protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADEVASLVLRVDSTQAKGASADLDKLATSGAKAEQAAVKVGTAGKAAAAGLGAMGQAAKTAQAQAAAAAMTAGEMRLAM
RSLPMQMTDIAVGLSTGQSPFYVLMQQGGQLKDLFGGIGPAIKAVGGYVAALITPFTAAAAGAAALAVAYQQGAEEGRRF
TAAITLTGNAAGVTESQLAAMAKRISDIQGTTGNAAAALTKLVETGKIAGDSIEGLGRAAVLTEAATGRSVDEMVKDYER
IADAPAEALTKLNERYHFLTLAVYERVKSLQEEGRQQDAARLALTTYAQAMEERSNQVVKNAGYMERAWNAVKGAAKGAW
DAIADVGRPDAAQDVLNGLEREARQRRENIALAEQAGASVSKAERMSLAAAEACVALARDQMQTQSAIAKAQALDAQRSA
VGIAARDELNKLIAQGASNEEKRAKALEENEERIRRIRAGGGTVTATEEAASIAAINKQYEKRSAAVAGSVAAGVRELEQ
AREREAVLRAELETTGKITSDRQKLVAFEQRIADLKAKDQLTADEKSILANETANRQQLERNAGLADQIELQKEVVKLKT
LEASAQATLAADQDRYNDLLEGFTASPRVREQLQAQQQIYRDFQRQVRASEKEGLTPDALAARVQVLKLNLDQRLELLAR
HYENVGVLEGDWKKGAEGAFNDYAETVGNVASATRNAFADAFKGAEDALVQFVTTGKLSFAELADSVIADLMRITVRQSI
TGPLASVLGSVFSNAFGSALPATASWAMPELAGRRATGGPTLPRRLYEVAENGPELYDEGGRTYLLSGGDGGHVTPLSRN
AYRPSMPVTVNVHGVDSQPQVRARPDARGGLSIDLIFRQVKDRLAHDIDAGVGSLPRALERRYGLNRQLA
>SEQF2266_AEE68515.1 hypothetical protein BPTD_3322 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYRPMLDKAQLAEFGLRSDDFPAAVIELWPDNVMPKVVFEAMGSQWRIGFAGPTGLDYGALPGVMRMLGVPPEQETDVFD
GVRVMESAALRMMNKK
>SEQF2266_AEE68516.1 hypothetical protein BPTD_3323 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNIIFKLQPAPTFTVPVEIPRHGEEPANIKVTFRHKSRDEMKDFLERADKSDASQDIALVNEMIAGWDGPDMEFSDEAV
GLLIQNYQGAVPALVQAYSLELLQARRKN
>SEQF2266_AEE68517.1 hypothetical protein BPTD_3324 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSGWPELNERVVRAVNTASNTFALEGIDTTKVGRFSKGQGIGTATPVSTWVDLSQVTNVAKTGGEQQFYQWRYVEDRNG
RQRQRPTYKSAKFITLTLDYDPALAWYEALKEADAAKDAVVLRAKLPNNDELYYLVYPSFDSDPSMELDANMQNTATFSM
MSDFTRYAPLAS
>SEQF2266_AEE68518.1 hypothetical protein BPTD_3325 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNEARITAERLRSVVHYDPETGKFTRLVRLAQRHNVGDDAAHATANGYQRVGIDGQRYLAHRLAWLYVYGAWPTQNIDHV
NGDRSDNRIANLRDVPQAVNMQNRRHPQADNKSGYLGVYWERGAKKWRSRVQVAGKAHEVGLFDDPAVAHAAYVAKKRKL
HEGCSI
>SEQF2266_AEE68519.1 hypothetical protein BPTD_3326 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQDLIRAAFEKRLKDWAKARTPELAVAWQNINFTPPSNAVYLRAYVLPAATISRDAAGDHRQYRSLFQVNVVMPIGAGS
RAAEQIQAELDALFQVNLIMPSGGLAVRVRTPISSGQPTTGDADHTVPISLGYDVQFYPE
>SEQF2266_AEE68520.1 hypothetical protein BPTD_3327 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSFTADLGKFAARAKGNIDTATRQATVLLAKGVILKSPFDTGRFRANWQFSAAGIQRATSMAVDPDGQVTLHRLVADIKQ
TRAGGVTYLSNSLPYAVPLENGWSKQAPQGMAKLTAQEFQRYVSQAAKDANK
>SEQF2266_AEE68521.1 hypothetical protein BPTD_3328 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATFDYADMAATAQELLLEFGGPVSVRQFVTGEYDPDLGQAPTTTVDNAGIGALFDYSAQAAGLANMAGSVIETGDKQMY
LAPALAAGGAMPEPKPADLVLALGATWRVVTVKTLAPAGLVLLYELQLRQA
>SEQF2266_AEE68522.1 hypothetical protein BPTD_3329 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MENFLRLVVPDPSGEPGLQECCGVQLYTADGMPISGLVAMKLESSTDRPIWRATLVMDINVSGKAV
>SEQF2266_AEE68523.1 hypothetical protein BPTD_3330 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLLTRGFPSACGDIPMPLIVEDGTGLPNADSYVSVADCQAYAAAHGLAFAGEEAALEAALRNSALYLDGEYTYRGERAT
DTQALEWPRTVATGVPREVVNACCELAARALTGPLWQDVSSTTAGAAIEKTVGPITTKYASAAGARNDGQTRYAGVAAML
RRWLSSYGSSVKLVRC
>SEQF2266_AEE68524.1 hypothetical protein BPTD_3331 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQKTKLPVWYLPGPFYRYEQDVKAEAAKAGVRIVDANATGSRDGAAKEVPKVTLKPEYRSKGKAEAPKEKESDPQPKDP
AKT
>SEQF2266_AEE68525.1 hypothetical protein BPTD_3334 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLDRNDPEVKALLEEVAAEATEALSAKNKELLAELRAAKAKAKGSEIDPEEHARLQTQVEELTGKLDKVTKDSARQIEK
LTKDLAEKDDALTQHLIDSGLSTALAKAGVAPHFMDAAKAMLRGQAAIKDGAAVIGDKPLADHVTEWAGTDQGKHFVTAP
ANSGGGGQGGNSGGKCTGNMGGSREDRVAALKVKFPELAG
>SEQF2266_AEE68526.1 hypothetical protein BPTD_3335 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPLHLVPDAPKPAETEKDRIRKRIKALPKPKDMIQCPRCGGREVIETRIGVFETARTWSGGTKVLLCVLCFMRGERVVLK
>SEQF2266_AEE68527.1 hypothetical protein BPTD_3336 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRYSNGVVRRIIALLNQVDSDLGEQITRAMGRLPASAFTVARLKELLKDVRTLNAEAYQQVRGELEKDLRDLAGYEIGYQ
GQLFDSLGIEFTTRGVTAGQVYAGAMAQPFQGRLLREWMAGLEAGRASRIRDAVRMGYVEGQTIQQVVQRVRGTRAKAYA
DGLLEIDRRNAEAVVRTAISHTAGFARDRWYDANDDIVGALAWVSTLDSRTSQMCRLRDGLRYEPDSHKPIGHKVPWGAG
PGRLHWQCRSTSVPILKGMEDDPLIGTRAAKDYRDSARGKGEQVRATTTYADWLRRQPAAIQDDILGPTRGALFRKGGVE
LESFYNDRGVYLTLAELRRKDAAAFAQAGVE
>SEQF2266_AEE68528.1 hypothetical protein BPTD_3337 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVDSKHPLWLANQPRWERCRTALQGRDAVHAAGEKYLPKLAGQDKAEYDAYKGRAMFYGATARTEEALIGMVFRKEPTV
TLPAALQPMIEDADLAGTPVDTFIENVTKEVIDVTRVGVLVDYPVASGEFMTVGQAQAAGMRPYLATYKAEAIINWRTAR
VRGVNQLVLVVLAECYTDPKDEFTAEEKTQYRVLDLVDGFYRVRIYRTDLNTPAFEYTPMMNGKRLPYIPFVLIGRNGEA
IDPQKPVLLDLVDVNMSHYRGTADYEHALHFTALPTAVVIGHELKEGQALKIGSSEAWVFTDPQADAKYLEFSGQGLDSI
KVSLERKEGMMATLGARILAPEKRDAEAAETAKIHRAGENSVLGGIALGVGRSLAKAFRWAAEWAGAGSGTVEVKLNTEF
FPAGLTAQDLTALVGALQAAAISPQTFYDNMRRGSIIDDGVTFEEEQDRIEAAGPALGTLGGQDVKPANGAV
>SEQF2266_AEE68529.1 putative phage terminase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTLNQPQARFLALPHKFRAFVAGFGSGKTWVGGAGLCRHAWEFPRVNSGYFAPTYGQIRDIFYPTIEEVAHDWGLAAKI
NESNKEVHLFAGRKYRGTVICRSMEKPGDIVGFKIGKGLIDELDVMKADKAALAWRKIIARLRHTAPGLLNGVDVTTTPE
GFKFVYQQFVKQVRERPELAALYGLVQASTYENGKNLPEDYIPSLRASYPPQLIAAYLRGQFTNLTSGSVYANFDRRLHH
TDAAEEPHEELHIGMDFNVLNMTATVNVIRAGLPLTVGELTKVRDTPEMARMLKERFKDKGHGVTIYPDASGGNTSSKNA
SESDLSILRKAGFTVRVNSRNPSVKDRINAVNGMLLNDEGARRWLVNTDRCPTLTEALEQQVYDKNGEPDKSTGHDHPND
AQGYFLVHRYPITPTGMSRIKLTGT
>SEQF2266_AEE68530.1 hypothetical protein BPTD_3339 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARPSKYQPAFAEQAAKLCRLGATDKDLADFFHVTERTLNTWKKQIPGFLQALNGGKVMADAEVADRLYQRALGYTHVED
DIRVCDGVIITTPTTRHYPPDTTACIFWLKNRRPDLWRDKPDPTNDDNAPPPVKVVIEVVNTSIPDADA
>SEQF2266_AEE68531.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68532.1 putative membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGRLLLRRCGGGQSSMGASLKVGIGSLAELLGQATNALLVSIRSQQIGPLQRKPLPSCEVENVAAVGRPQSVPAERRIG
DSYTFLIYAGGTRLKLFDRIALFLWRDRYDYDPTRGCPGEQNNISLWTRLRPARKRLIAVLLNGQLWLAFIGGMFALGAA
LLPGYLDRVKTDQQVNTNTGELLLRCVQEANHVLRCRPVSDEQDEIVSGVDGPSLDSNRPGRESPAQDVKHE
>SEQF2266_AEE68533.1 hypothetical protein BPTD_3343 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNLLLGLGGQLGPDAGPVAGTQITAAYFAAGGPLYRCAMLDRNRSAARAPLIDECRGHSDLARQRCSTGGVFPVEIAIQ
VHGPNYSVATVQTQAMLQNNLNSIAI
>SEQF2266_AEE68534.1 putative phage repressor protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIGGVPAPWEPGGTTTRQMERHSQGLRISQAVNVGHVEDSGYSANDHEFIPIPELDVRLAAGKLGIENYQETEIGQILL
RRSFLESFKRPIKRMRICYGNGPSMEPVIRHRNPMLVDVHPVSLDEVQPRFVYAINRGGKMIVKCLERWKDGRWMAISTN
PDPDHHPFPLATDDGGEVRIIGTVLWSPYDLRNGVDERLLQGW
>SEQF2266_AEE68535.1 hypothetical protein BPTD_3345 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYMNIDNTLIQAVVVAGVILLLILWICLPFAVFGVKRRLDRIIRLLEQQQSAPQPERRTDSEPFVSRSLR
>SEQF2266_AEE68536.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVPRPESIIPPAGNAATGAAGIARAFKRALVSQCHPNMLFAVLLPFLIALLGAILLLWLFWTPLNEWLRFEASQWQAIN
QVDDWMVAAGLFSLKIYLVPVIAAAILLPISGILGLAIAAVFVMPLVLRHVGGREYAGLARQGRNATAVSVWNALWVSLA
FGAGWLLTLPFWLIPPMVVILSVFWWAFAFTRMLRLDAIVEHASPAERAILLKRHNSGFWLIGLVCSLLNLLPPAWIILP
VFSGLVYAHYGLDALQRLRQERAIDV
>SEQF2266_AEE68537.1 hypothetical protein BPTD_3347 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARPENGYAGYDSQTRCDLPTMPLHVPGSDIPTLRAALARSDAWLVACFCAAWCDTCQQYRPKLLELARARPGHTFAWID
IEDHPDLLGEEDVENFPTLLVQAHGKVLFYGPMLPHIGHLERLLDSLDPQGRPVATGLPDVARLLAAA
>SEQF2266_AEE68538.1 putative ATP-dependent RNA helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTESTSSDAPVTDAPTRTFADFGLHPLLLKLIADTGYTNPTPIQAQAIPVVVEGRDVMGAAQTGTGKTAAFTLPILHRLM
PLANTSASPARHPVRALILTPTRELADQVYESVKRYSLHTPLRSAVVFGGVDIGPQKEALRRGCEVLVATPGRLLDHVEQ
KNVNLSQVGILVLDEADRMLDMGFLPDLERIIRLLPAQRQGLLFSATFSNEIRKLGRSYLNHPVEIEVAARNATADTVTQ
IAYQMHGDTKRAAVVHLVKSRGLKQVIVFSNTKIGTARLARQLERDGVKAESIHGDKTQGDRMKALEAFKAGDLEVLVAT
DVAARGLDVAGVPCVINYDLPYNAEDYVHRIGRTGRAGASGEAIALFTADEERYLLDIEKLIKRQVPRGKLELPADLVAR
SHGRDRDAPRERGADRHRGERCTSGAAAPRQPVDELFYKPYEPANGQPASPETPEQEGRSNAPKRQLAVLLGGSRKG
>SEQF2266_AEE68539.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDRDLYVYGAILLLTLCSVLTRAGFMLFGDYIPLPDGVRRALRYAPAAALTAIVVPDLLPWKAGLGPAFDYKLVAGVLA
IMAFLRTRSAVLVIVVGMVALWGLRWLAG
>SEQF2266_AEE68540.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASDPATSALEDARQARQERADAFRAGVRAITPALIATGTWGMVTGVAMVKSGLTESMALAMTLLMYAGSAQLTSLPLIA
TGAPLWLIFAAGFVVNLRFLIFGAALHPYFRHMSWPRRLGLGYFTTDMGFVLFMPRFGDAAERGTREQLWFFLGTVAPGW
MVWQVTSIVGIYLGSLVPEAWSLDFAAVLALLAITVPLANSKPMLVSMLAAGMVAWVGQLLPLRLGLAAAVVAGIVAGIW
AERFFKGRT
>SEQF2266_AEE68541.1 branched-chain amino acid aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMSDRDGFIWYDGKLVPWREATTHVLTHSLHYGLSVFEGVRAYETAAGTAIFRLQDHTNRLFNSAHIYQIPLPYDRDTL
NEAQREVVRANGLASCYLRPLAFYGSEKMGVSPKGAQVHVAIAAWPWGAYLGETALAQGIRVKVSSFARQHVNVTMPRAK
VATTYANSIIANAEALQDGYNEALLLDTEGFVAEGAGENIFIVKDGVLCEPEIASALTGITRSTIHALAADLGLRVVTKR
LTRDDVYIADEAFFTGTAAEVTPIREVDNRQIGAGRRGPVTEKLQQAFFDLVNGRNPKYQHWLTPV
>SEQF2266_AEE68542.1 hypothetical protein BPTD_3352 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAAAQAAVPAHDAIEVGAEDLPVYCPGPKAPLWSMHPRVFLDVTHTGQASCPYCGAAYRLKPGTVVHGH
>SEQF2266_AEE68543.1 hypothetical protein BPTD_3353 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFATPDEAEHAFYEALEHADLDRLMQVWSDDEEIACIHPGGLRIVGHTAVHESWQQVLANGPLHLRPLRPLVMQSMMCAV
HVLVEQVTVMTREGAQFANCYATNAYHKGPAGWRMVLHHASQAPAEAGVLDLHDFPDRLH
>SEQF2266_AEE68544.1 hypothetical protein BPTD_3354 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAASRIDLTPCPVPPWLPDRHSQTVYAAALAQYHRIAFVRERVDTPDTDFVDFDWTGPGLFPHKTAEGAAPAGPAPQGNG
RIAAARWITATDWASLPQTADTPALILFHGLEGGSASRYAQSIAHYFRARGWIVVIAHFRGCSGVPNRLARAYYSGDSAE
VGFMLDTVRARIPHARWHAVGVSLGGNALLKYLGEHHDEASWLAAAAGVSVPLDLVAGGKALCTGFIARRIYTAYFLKTM
RRKVLEKAKRFPGAIDVIRIAHARDLRDFDDAYTARMHGYRNALDYWTRASSKPWLAHIKTPTLVLNARNDPFLPESALP
IPAECSDSVLLHQPAEGGHAGFPTGPFPAHLNWLPQRLGRFFEMGS
>SEQF2266_AEE68545.1 hypothetical protein BPTD_3355 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRWNLTFSPSLGRRALAAALSLALGLPVAPAVGQPSGLPSMGAASASELSPMLERQLGDAIMAQGRRDPTYINDPELRQ
YLTTMGRKLASFAPGAAPHVEMFGVRDPEINAFAMPGGYIGVNTGLIVSSASESELAAVLAHEIGHVAQRHIARGMTQQN
QNSMVMLASLAGALLAALAGGGGNLAMGVAAFGQAAAINRQLGFSRDAEREADRTGLQMLAKAGYDPDGMAQMFSRLMNA
SRLNEGMGGGAWASTHPLSIDRMSDVQNRIRGLPGSRHVDSDGFWFIRAKMRVAQGRDALSLRTAQQQLQDESRALSGVR
QAAAFYGLALYAFQRNDLAQARAFLEQAGAGGRSSPQMARLAIDVAVAAKDNDQALALAQAAVKRWPDRKALGIAYAQAL
QAAGRHADAQAYLRERARQWGGDEPSLYQLLAQSEERTGHPVDARRNMARYYDLTGAYASAESQLQQARGLSNDFYEQSQ
IDVSIREIKQKLADERQLLERFKSG
>SEQF2266_AEE68546.1 putative UTP--glucose-1-phosphate uridylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIARGGKKFAASTNFPALPPGVFMQVVRKAVFPVAGMGTRFLPATKAMPKEMLPVVDKPLIQYAVEEAVAAGITDLIFVT
GRNKRAIEDHFDAAPELETDLEAKGKHELLALVRDILPAHVNCLYIRQSAPLGLGHAVLTAAPAVGNEPFAVLLADDLID
ADTPVLKQLIDVAVARQGSVLGVQEVPREDTRKYGIVASQPVDARTERVTHIVEKPAPEQAPTTLAVVGRYVLEAAIFDH
LRATTVGAGNEIQLTDGIAALLRERDVYAHRYDGKRYDCGSKAGMFQATVALGRKYHGLIPE
>SEQF2266_AEE68547.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRMDWLEWLIPWEFSPTLVAAFVVAIVLFVRGQRVHHVTAARQWLFWSGMVLLYLSMHTRLDYYAERMFFIHRAQHLVL
HHLGPLLVMAAFPGSAMRAGLPMAWRVRLRDFLRTGTGRALAAVLTHKVFVPTLFVFLVLVWLLPSVQFYSMLDWRLYRL
MNWSVVISGFMYWNLILDRRPSPPAAMTPGGRVLSPALTMAPQMVAGAVIAFTERDLYPLFELCGRAIAMSAQTDQTIGG
LTMWIPAALVEVVGLLVALGTLMRLSGKGRLRPQDRAARARQRAAGSPTSPAA
>SEQF2266_AEE68548.1 outer membrane porin protein OmpQ [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRLLVVAAMAAGSSSVFWSVAPARAANQLELYGVVDVGLATTRVSGLGTRQQVLGGGQTDNLWGLRGTEELDGGWRASF
GLESGFDAANGTRNDDARLFDYGTWVGLGHAGVGELSLGRQQSIGLQYGGQLEIASWRDMGMGALFKASDNYRVNNLVNY
LSPEFSGWQWGVGYAFDVESGDTGRFDRSPAFSTGLKYEDGPLLAAFTWDKLNLHDTSATGGRSPQALQAGFTYDFEALK
MALAWSRQRNGFVGLNGGGQIGLGPEPFAHGGAINAWLLGLEVPVHGNGAWLVQGSMARPDWHWANGQQASKAYVVTLGY
RQDLSARTSLYAYGGYMKGYDPEDPFASDVGRATRFGVGMTQRF
>SEQF2266_AEE68549.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHYYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68550.1 hypothetical protein BPTD_3361 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFFDLFLRRAGVDRTHALSQRRGTSRLTFVCPRDALGAVRKQICLDFSAAGLSVAQFQVDSGRDAELASACITVSCPPE
LRAELMSQARRLSANPAVQQLRFGAAEPAGARACAEAVA
>SEQF2266_AEE68551.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFITLLLFFLSAAIIYFACEFFVNGVEWVGHRFKLGATATGTVLAAFGTALPESAVTFMAVVFGTTPEQKDIGVGAAMGG
PLVLATLAYAVVGLTLARTRRAGSSQVEAAINADQRRLARDQAWFMGVFVFKVALGLLAFAWKPWLGLLFLAVYGLYVKR
ELTREEECLDCEDLEPLKLRPRDPSPSLFWACAQTVLALAVIALASHVFVRQIELLGLAMGASPHVAALLLAPVATELPE
IMNALIWVRQGKERLALANISGAMMIQATIPSAMMIQATIPSALGIFLTPWLLDAPLLAAGGFTLAAILLLWLRFRRAAM
SVPALSAVGGLYALFAGYLGWHFYA
>SEQF2266_AEE68552.1 putative Xaa-Pro aminopeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLPPDDIAPFAARRRRLMDHMRAAGGGIAILPTAPQALRNRDAEYPYRHDSDFFYLTGFTEPEAWLVLVAGATDRALLF
CRDKHPEHEIWEGFRFGPEAAAARFGFDDAHGIGTLDELVPALLLDQPALWTPVAASAALDERVRSWLAAARAQGRSGRL
APAVLRDPAPVLAGMRLVKDAAEIAAMRRAAKISAAAHQRAMRAARPGMREYELEAELLYEFRRQGAQSVAYNSIVAAGA
NACVLHYPAGDAELRDGDLVLIDAGCEYDSYAADITRTFPVNGRFSGPQRALYDLVAHAQEAAVAATGPGRSWNDGHEAA
VRVLAQGMLDEKLLTGSLDGVLESGAYSRFYMHRTGHWLGLDVHDVGDYRGAGPAGAQRPWRMLEPGMMLTVEPGIYVRA
ADDVPARFWDIGIRIEDDALVTEEGCELITRGVPVQAREIEALMRE
>SEQF2266_AEE68553.1 putative inner membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQAHLSVPGAARRPRSKIALGLLACALGWIGAHWWYLGRRRAWMVTLAAILCLAATQWFPVWYDNPAFFLLFIPMIDGF
IEGVVFSLMPDEKFDRLYNPGLGQVSRTGWGPVLVAISGVLVGAIASMFAVAMVVVYTWVAMGWLDGYVF
>SEQF2266_AEE68554.1 hypothetical protein BPTD_3365 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRCMTLPAYDIAILGAGPVGRVLALLLARLTPQPQRIALLQGGAGLPPTPAGTLGPAADPRVLALNHGSRVLLESLRAWP
AHAAEIRHIHVSQRGRLGRTVIDREDFDVPQLGNVVAYAALHAQLEQAVQDCGVTVLSGPPARVDGQDGEGLTVRQGDAA
LHCRLAVQCDGAGGSDVRRDYAQHAVLTSAHATLPRSGWAWERFTNEGPLAMLPHPQTPEAYSVVWCCAPPRARRLAGLD
DEAFSRELTEAFGTRLGRLRSAAPRHVFPLELKARHAQAHGRLATIGNAAQTLHPVAGQGLNLGLRDAAQLAHALPDWLA
APQADPSPLLATFARARLADRWVTAGLTDLMPRIFATGLAPVEHACGLALLGLDIAAPLRAPLARHLLQGLRV
>SEQF2266_AEE68555.1 hypothetical protein BPTD_3366 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRMRIGPWSLPNNVLVAPMAGVTDRPYRQLCKRLGAGYAVSEMAASNPRLWDSVKTSRRLNHEGEIDPISVQIAGADPTM
MAEAAAFNVAKGARIIDINMGCPVKKVCNVASGSALLRHEDLIVRILEAVVAACAPLGVPVTLKTRTGWDREHRNALRVG
RLAEQAGIAALTLHGRTRADLYTGQAEYDTIRAVKAELKIPVIANGDIDSPEKARQVLDYTGADAVMIGRAAQGRPWIFR
EIDHYLRTGARLAPPSYGEMRDLLLEHLDDHYRFYGEHTGVRTARKHIGWYLDDLPGAAAFCARMNQIDNTREQWRAVAD
WFDTILREGRDQQAFVAQPLLAA
>SEQF2266_AEE68556.1 DNA-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKKDVLEECVRASLERYFEDLGDSEPHDMWDMVMRCVERPVLEVALERSGGNQSRASEMLGITRNTLRKKLLAHNIQP
>SEQF2266_AEE68557.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKIETALLSVSDKTGIVEFARALTARGVRLLSTGGTARLLSEAGLAVTEVAQHTGSPEILEGRVKTLHPKIHGGLLARRD
SAEHMDTIAACGIDRIDMLVVNLYPFRETVAKPDCTFADAIENIDIGGPAMLRAAAKNHGTDAGGVTVVIDPADYSRVLA
QMDQGGSTSYALRLELAAKVYSHTAAYDGAIAAYLTSLAEAAPAQDAVPARNEWPGTLTIQVRQEQALRYGENPHQTAAF
YVDAQRPAGLLGNYRQLQGKELSYNNIADADAAWECVRSFDSTACVIVKHANPCGVAIGDGTLHVYQQAFKTDPTSAFGG
IIAFNRPVDAATAEAVSGQFLEVLLAPAYDGAALAILAAKKNVRVLEVPAGPGQNAFDIKRVGGGWLVQSPDAYNVPRDA
LKVVSKRQPTEQEMNDLAFAWKVAKYVKSNAIVFVGGGMTLGVGAGQMSRIDSARIASIKAENAGLTLRGSAVASDAFFP
FRDGLDVVVAAGATCVIQPGGSVRDDEVIAAADEHGIAMVLTGTRHFRH
>SEQF2266_AEE68558.1 Holliday junction resolvase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVLGIDPGLRRTGFGVIDAEGMRLRYVASGTIVVPPALALPERLKVILDNLREVARETRPDVAALEIVFLNTNPASTLL
LGQARGAALCALADSALDVHEYTALQIKKAVMGTGRAAKEQVQMMVQRLLSLDGTPAPDSADALACAICHAHVGPLHDKL
DRLGTAAQLGSRPRLRNGRLVG
>SEQF2266_AEE68559.1 Holliday junction DNA helicase RuvA [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGRITGTLIEKSPPVVCVDVNGVGYEIDVPMSTLYALPETGARVTLFTHLVVREDAQLLYGFGSSAERSTFRELIKVTG
IGARTALAVLSGLSVAELSQAITLQETGRLTRVPGIGKKTAERLLLEMRGKLGADIGATPHAASGHQSDILNALLALGYS
DKESQAALKKLPDGVDVSEGIRLALKALVR
>SEQF2266_AEE68560.1 hypothetical protein BPTD_3371 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRILVIGGTGFIGRHLVARLAAQEHKVLVPTRRYNKGRDLQVLPTVTLIEADVHDDAELDRLMHRCDAVVNLVGVLHGGR
GRPYGAGFARAHVLLPERIAQACVRNGVARMLHVSALGADSGGPSMYLRSKGDGEAAIQRVFGATGGWTLFRPSVVFGPD
DNFTRMFARLARLFPVLPLAGARSRMQPVYVGDVADAMMAALANGHTAGKIYELCGPQVYTLGEIVRLCALWSGHPRPVC
EMPMALGRMQALLFECLPGDPLVSRDNLDSLTRDNVASGAAPSGLAAPPAALEAVAPAYLARR
>SEQF2266_AEE68561.1 serine/threonine dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQPQLPTYADVEQAAATLAGVAHRTPVLTSATADAMAGAQVFFKCENFQRMGAFKFRGGYNAIARLTPEQRRAGVVTFSS
GNHAQAIALAARLQGVQATIIMPQDAPAAKRAATEGYGGRVVTYDRYSEDREAIARRLHEETGATLIPPYDHADVIAGQG
TAAKELFDEVGELDFLFVCLGGGGLLAGSALAARALSPACRVYGVEPAAGNDGQQSLRKGEIVTIAAPKSIADGAVTTHL
GRLTFAIIQQQVADILTVSDAELVQSMRFFAERMKMVVEPTGCLAATAALRKLIPEAAGKRVGVIISGGNVDLPVYARLL
AD
>SEQF2266_AEE68562.1 Holliday junction DNA helicase RuvB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAIQSDSLSSLPDSPRIVAPQPVSPNEESIERALRPKALEEYVGQQRAREQLEIFIAAARKRGEALDHVLLFGPPGLGKT
TLAHIIAHEMGVQLRQTSGPVLERPGDLAALLTNLERNDVLFIDEIHRLSPVVEEILYPALEDFQIDILIGEGPAARSVK
LDLQPFTLVGATTRAGMLTNPLRDRFGIVSRLEFYNTDELARIVTRSASLLNADITADGAHEVARRSRGTPRIANRLLRR
VRDYAQVKSHGVIDQDAAGRALAMLDVDPQGLDVMDRKLLEAIVHKFDGGPVGVDSLAAAIGEERDTIEDVIEPYLIQHG
YLQRTPRGRTATLTTWRHLGLTPPAAASGGTGELFSK
>SEQF2266_AEE68563.1 ATP-dependent DNA helicase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDPRALGVLARVFGYESFRGDQQAIVEHVIGGGDALVLMPTGGGKSLCYQVPALVREGTGIVVSPLIALMQDQVDALTE
LGVRAAFLNATQDWRVAREVEQAFLAGELDLLYVAPERLLTDRCLQLLERGRIALFAIDEAHCVSQWGHDFRPEYLGLSM
LHERWPEVPRIALTATATAATRSEIAQRLALDEARHFVASFDRPNIRYRIVEKNEVRRQLLDLIRSEHEGESGVVYGLSR
ARVEETADFLCANGVNALPYHAGLSPAVRAANQARFLREDGIVMVATIAFGMGIDKPDVRFVAHIDLPKSVEGYYQETGR
AGRDGLPASAWLAYGLQDVVQQRRMIDESPGDDAYRRRLGQQLDAMLGLCETVECRRVRLLAYFGQTITACGNCDVCLEP
PQAWDGTVAAQKVLSAVYRLWKERGQRYGAGHIIDILRGKSTDRTRQHDHETLSVFGVGADLSENAWRGVLRQLLAQGLL
AVDHEGFGTLALTEGSRAVLKGEHQLMLRREAEKKPRSSRAGARARPDPIDLPAEAKPVFESLRSWRGEVAKSNGVPAYV
IFHDATLREIALARPESLDDLSHISGVGARKLQAYGEEILRCVQRP
>SEQF2266_AEE68564.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE68565.1 putative carbonic anhydrase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFPKRLTDGYHAFLQGRFHSERSRYEALAEKGQKPEILLIGCCDSRVSPEVIFDAGPGEIFVVRNVANLVPPCEPDAESS
FHGTSAAIEFAVNGLNVKHIVVLGHASCGGIRSFYDDGEPLSKMDFIGKWMSQISPVAERLGPSTGDRATDIKRLELAVV
EESLRNLMTFPSISSRVERGELELHGTYFGVATGLLYVLDRATGQFAPWLEEDAAA
>SEQF2266_AEE68566.1 putative amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSELAFSSLAELARGLEAGRYSAVELARHYLARIARANEALHAYVSVDEAGALRLAQAADARRAAGYALGPLDGLPIAIK
DLCEIEGQVTTAGSAAWRERRSKVTGTAVRRLLAAGMVVLGKTHMVEFAFGGWGTNPVMGTPRNPWDLSHPRIPGGSSSG
SGVAVAAGLAPAALGSDTGGSVRIPAALNGITGLKTSAGLISLHGAVPLSQTLDSIGPMTRDAYDAMLLVQALAGPDAAD
PATLGVPALVYAPPREGGRPLAGRRIAVMAEENYPLAVSADVALAVRQAADTLRALGAEVATVATPFDFTRLMHANGRII
AAEAYVLHRGYIDDAALPLGEFVRARVQSGRAIGAADYIAAMREHAQARAQWRAWMQDYDALLTPSLPFAACRLDEVDEQ
GAPLAAFSRAGNFLGASGLALPAGFSADGLPVGVQLMGKPFDDGLLCGLGVAFQQATDWHLRTPDLRAAGLA
>SEQF2266_AEE68567.1 putative branched-chain amino acid binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVSAMLRAPMALAGKLGVKKAAILYSDEPFPAGLADGGRAQAAKNGIEVVLYEKYPKGQKDFSTLLQKAKAAGADALVP
TSYEGDLISMTRQMKQLDINFPYTFMVYASTPQFQAIGADSNYIFSHTNYHPAINWKVNAGLTREQFAKAYDTLFPKAEF
PPDFQTALTYGAGALTEEIIRKAGATDAAALKQASMDLSDKVTVMAGPYAIDETGKQLQMPFPVVQLLPGKGMVPVYPED
VAVEKAVYPAPAWNKR
>SEQF2266_AEE68568.1 putative branched-chain amino acid transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADTGICYKVLGWPILPSLAAASVVGLLIALLFAPTLRLRGVYFGIVSLALATIMRLLISNLPDGFTGGSMGLILSSANN
PTHSYYAMLAVMAATLATVAWLSISRLGKALKAIRDDDAAAACVGIHVPRTRLKAWLLAALFPALAGGIEAWYTNVVDPE
YAFHVLITAKSIIYAMAGGFGTIIGPVVGTLALLGIDHLIWQKFPVLNLLLGLVIVLLMLFLPRGIVGSLLKRYPQLRQY
IA
>SEQF2266_AEE68569.1 putative branched-chain amino acid transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGLIIQGLVNGLILGAIYGLIGVGLNVIFGVLRVVNFAHGEFLVLGAYFAYYLLEYAGIDPLLALPLAFGAFFLAGYVL
YFVLIPRLSKADDPEISSLLLMFGVSIMLGAIMLLAFEADARSLPYEIEPVFFKIGPVLIPTVRLIALAIALAVVAVLAW
FLYRTQLGKALRTIIMNRDAVRIVGINVERLSAVAFGLGIGLAAVTGVLVAMVFPAFSPFMGNDYTLIGFIVIVLGGLGH
PVGALVGAMLFGVTEQVSVVFFNPSIATICGFVLMVAMIFVRPTGLFGHRALR
>SEQF2266_AEE68570.1 putative branched-chain amino acid transport ATP-binding ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLKVSNLQKRFGGLVALRGVDLHVPRAAILGIIGMNGSGKTTMLNCINGLYVPDAGSIALDGAEIAGKQVHEVARLGVGR
TFQVPRVFQHLSLLDNLDVAQQQTSRNADERYAQSEYWLHKVELHRLRHNHAEELSGGQQKLLELARIMVAQPKVILLDE
PFAGVNPALAQLLIGIIRDVPTEHGCSVVLVSHDLTSIYQLSHHIIVMNEGAILCEGDADRVRTDPRVIEAYLGA
>SEQF2266_AEE68571.1 putative branched-chain amino acid transport ATP-binding ABC transporter [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTSAATTEPVFALDHVTVAYHGDITILNGVNVQARAGQVTGIIGPNGAGKSTVLKTLFGFLPLRGGRIVLRGQDISRQP
SHERAASGVAFVPQHRSLFGELSVEDNLVLGCWPFRRDKDKVRRRIDSVYQRFPILAQKRHDPVSSMSGGQQRFVEFGRA
LLIEPSVILLDEPTAMLAPKISKEIYALVRGFADEGMTVILVDQNVRRCAEISDYMYILELGRNKAEGAHEQFGHDGGLR
DMVASWMDYKID
>SEQF2266_AEE68572.1 putative sulfite reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYVYDPVDQQLVEERVKQFSDQTRRFLDGQLTEDEFRTLRLQNGLYIQRHAPMLRIAIPYGMLAARQLRKLAHIARTWDR
GYGHFSTRQNMQFNWPRLEDVPAILAELASVQMHSIQTSGNCIRNTTSDHFAGVAPDELVNPLVWCEIIRQWSTLHPEFA
FLPRKFKIAVSGAVEDRAAVGVHDIGLQAVERDGQLGFRFWVGGGLGRTPMVGHLINPFVPWQHLLTYLQAALRVYNLHG
RRDNKFKARIKILVKDLTPEVYAREVEQEWQSLKDGPDTITEDQLNTIAGRFVWPDYDSAAASEPDPTDARAQAYPRFAR
WLRTNVRAHKVAGYAAVTVSLKATGVPPGDITADQMDAVAGLSERYGFGELRVSHEQNLVLADVRRARLHDLWQELQQLN
LATPNIGLLTNIIACPGGDFCALANAVSIPVAESIQRRFDDLDYLFEIGELDLNISGCINSCGHHHVGHIGILGVDKAGE
EWYQVTLGGRQNGAAKPLPDLESPRGGGAAIGRIIGPSFARTQIPDVIDRLIRTYLELRDSDAERFIDVVDRVGIDPFKR
DVYADPAVAKLASQQEPAHA
>SEQF2266_AEE68573.1 hypothetical protein BPTD_3385 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPEASHPDHLIRAGRLQADDARLFTPEADGPADQTPPDEPGWLVTLATWKAAAATLRARRHPVGVQLPPDARLDELTGPD
GELDRAALSFIAIEFPVYTDGRGYSLAQLLRRRYGWDGELRAVGDVMIDTIHYQARVGFDSFLVKPGHDPQRALAAFRTF
SVHYQHTYPAPLAA
>SEQF2266_AEE68574.1 hypothetical protein BPTD_3386 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRIRHLVAACAALFSIATAPALAQDAELKVGVTVGPHAQIGEVVKSVAARDGLRVTLVEFSDFIQPNAALDAGELDLNIY
QHRPFLDAQNKARGYRLAPVASAVVQQMGVYSRRHQTLDALPQGAKVAIPNDPTNGARALLVLQAASLIELKPGVTVNAS
LFDIAANPRNLKFLEIEAAQLPHSLADVDAAAANSAYAIPAGLSPARDALALESKDAPFAVVVIAAREDNKNDPRIARFI
KAYQSEEVKQFVARQFPGAYSTSW
>SEQF2266_AEE68575.1 hypothetical protein BPTD_3387 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPCAVPVMSSSADLHPHARALLADHYAAIDADLPALLELLFARSAGEDWHKAGTFKHHLLGVYRTLALWNQPREVRLLGL
FHSVYGNEYVDLTLFDRERERATLRQYLGEEAEQWVHLFCAMPRTQFVQRILAGEGRGATGLVLQGADGQPLTLTPRQVA
AFIVVSAADVGEQWHSWQDEIFAGYPHQERRDTSTHWAASLWPGPLKPPARILDMLSRLLQPLSTLPAGTGIPTPPAFGH
CTAVLDAGDEAAAAALYWQVITRMHPMTEMDSAHHLLQAAIAHNPWVAEPRLLLAQLALTAQDYDTALEQAAAGLAALQA
WGTSWDKRIEWSGWMAWARILLQNARDRQWPATLGGLNGLGLMG
>SEQF2266_AEE68576.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHI
>SEQF2266_AEE68577.1 hypothetical protein BPTD_3389 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAESARRIGLIIVGDEILSGRRQDKHFSKVVELLGARGLKLSWAELLPDDRATLAAVLRRSFASGDIVFSCGGIGGTPD
DHTRQAAAEALDLPLALHPEAEQAIALRAAEMAAKGQGTADMGTPENQQRLQIGMFPRGCEIVPNPYNRIPGFFVRDHTF
VPGFPVMAWPMLEWTLDTRYRALHHQVRHAEHSFLVFDMPESRITPAMLEIEQRWPGVRAFSLPSVGETGGPSHIDLGVK
GEPEAAAQALAFLRAEVVRLGGKLAPPAQN
>SEQF2266_AEE68578.1 IclR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRIPNATARGPGSHSDDGAGQHPIAIQVIDRAMRLLDALAAQPEPVTLKELSATTGLHASTAHRILNDLVVGRYVERVD
NGLYQLGMRLLELGSLVKGRLNVREAAIGAMRSLHKQTGQTINLSVQQGDEIVYIDRAWSERSGMQVVRAIGGRAPLHLT
STGKLFLSTYDTRLVRAYALRTGLAGHTRNSLTELDRLERELALVRRHGYARDNEELELGVRCIAAGIYDDTGKLVAGLS
ISAPAERLQDEWIRLLVDAAASISEALGYEPGVNGIHAPAAA
>SEQF2266_AEE68579.1 dermonecrotic toxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKDESALRQLVDMALVGYDGVVEELLALPSEESGDLAGGRAKREKAEFALFSEAPNGDEPIGQDARTWFYFPKYRPVAV
SNLKKMQVAIRARLEPESLILQWLIALDVYLGVLIAALSRTVISDLVFEYVKARYEIYYLLNRVPHPLATAYLKRRRQRP
VDRSGRLGSVFEHPLWFAYDELAGTVDLDADIYEQALAESIERRMDGEPDDGSLDTAEHDVWRLCRDGINRGEQAIFQAS
GPYGVVADAGYMRTVADLAYADALADCLHAQLRIRAQGSVDSPGDEMPRKLDAWEIAKFHLAATQQARVDLLEAAFALDY
AALRDVRVYGDYRNALALRFIKREALRLLGARRGNASTMPAVAAGEYDEIVASGAANDAAYVSMAAALIAGVLCDLESAQ
RTLPVVLARFRPLGVLARFRRLEQETAGMLLGDQEPEPRGFISFTDFRDSDAFASYAEYAAQFNDYIDQYSILEAQRLAR
ILALGSRMTVDQWCLPLQKVRHYKVLTSQPGLIARGIENHNRGIEYCLGRPPLTDLPGLFTMFQLHDSSWLLVSNINGEL
WSDVLANAEVMQNPTLAALAEPQGRFRTGRRTGGWFLGGPATEGPSLRDNYLLKLRQSNPGLDVKKCWYFGYRQEYRLPA
GALGVPLFAVSVALRHSLDDLAAHAKSALYKPSEWQKFAFWIVPFYREIFFSTQDRSYRVDVGSIVFDSISLLASVFSIG
GKLGSFTRTQYGNLRNFVVRQRIAGLSGQRLWRSVLKELPALIGASGLRLSRSLLVDLYEIFEPVPIRRLVAGFVSATTV
GGRNQAFLRQAFSAASSSAGRTGGQLASEWRMAGVDATGLVESTSGGRFEGIYTRGLGPLSECTEHFIVESGNAYRVIWD
AYTHGWRVVNGRLPPRLTYTVPVRLNGQGHWETHLDVPGRGGAPEIFGRIRTRNLVALAAEQAAPMRRLLNQARRVALRH
IDTCRSRLALPRAESDMDAAIRIFFGEPDAGLRQRIGRRLQEVRAYIGDLSPVNDVLYRAGYDLDDVATLFNAVDRNTSL
GRQARMELYLDAIVDLHARLGYENARFVDLMAFHLLSLGHAATASEVVEAVSPRLLGNVFDISNVAQLERGIGNPASTGL
FVMLGAYSESSPAIFQSFVNDIFPAWRQASGGGPLVWNFGPAAISPTRLDYANTDIGLLNHGDISPLRARPPLGGRRDID
LPPGLDISFVRYDRPVRMSAPRALDASVFRPVDGPVHGYIQSWTGAEIEYAYGAPAAAREVMLTDNVRIISIENGDEGAI
GVRVRLDTVPVATPLILTGGSLSGCTTMVGVKEGYLAFYHTGKSTELGDWATAREGVQALYQAHLAMGYAPISIPAPMRN
DDLVSIAATYDRAVIAYLGKDVPGGGSTRITRHDEGAGSVVSFDYNAAVQASAVPRLGQVYVLISNDGQGARAVLLAEDL
AWAGSGSALDVLNERLVTLFPAPV
>SEQF2266_AEE68580.1 hypothetical protein BPTD_3392 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPISRKLSALFAAVALTGADTALAEYPERPVNMVVPFAAGGPTDNVARSLAESMRPTLGETVVVENKGGAGGTIGTTQV
ARAQPDGYSILLMHAGFSTAPSLYKNPGYEPYTSFEPIGLVVDVPMTIIARGDFPPNNIKELAEYVKKNADKISLANAGI
GAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDE
SGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQLGAEVLTNEANPEALQAKVKQQVPQWAELFKKA
GVEKQ
>SEQF2266_AEE68581.1 hypothetical protein BPTD_3393 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAIPQQVLARQKATVNSLVAAQSAMFAGFEKLVDLNLKVVRATLDEVAQQSQQAAELKDPQDVASFTSGLVQPGAEKAL
AYGKHVYDIVAGVQAELAQLAEAQIAEGQQQLTEAVEQFSKNAPTGSESAVALIKSSLATANSAYDSLTKAAKQAAEVAE
SNLNAAANASFKAASDAAEVATKAAGRNRRAA
>SEQF2266_AEE68582.1 dihydroorotate dehydrogenase 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSILFHAYPLARPALFAMDAETAHEVTLAQLQRAYDCGLTRKLLHAQPEAPATLMGLSLRNPVGLAAGLDKNGAHIDALG
NLGFGFVEVGTVTPRAQPGNPKPRMFRLPRANALINRLGFNNQGLDAFIANVQRSQWRSQGRILGLNIGKNADTPIERAA
EDYLIGLAGVYPHADYVTVNISSPNTKNLRALQGGDELSALLGQLQERRLALADQHQRHVPLAVKIAPDLSDDQIDAIAE
ILPRHGIDGVIATNTTLARDAVQGLPHAEEAGGVSGAPVHELSLRVIERLRSRLGDAVAIIGVGGILSGRQASEKMAAGA
QAVQLYTGLIYRGPALVGECVRALAQGSR
>SEQF2266_AEE68583.1 arginyl-tRNA-protein transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDMSQLKELPFSTLQFYATAPYPCSYLPGRQARSQVAAPGHLINAGTYSQLVEQGFRRSGLFTYRPHCDNCHACVPVRV
DAARFEPNRTQRRAWRSHQALRAFVAELAWSPEHYDLYTRYQQGRHPGGGMDEDSRTQYAQFLLTTRVNTRLVEFRAPQG
QLAMISIIDVLDDGLSSVYTFYDPDMAGSLGTYSILWQIEQCRTLDLPWLYLGYWIADSRKMAYKANFRPLQMHVDGAWR
ETPP
>SEQF2266_AEE68584.1 putative NUDIX hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAQQSLQYFPAPRRARFCSQCGSPVDHRVPEGDNRARDICDRCGAIHYQNPRMVVGTVPVWENRILLCRRAIEPRYDTW
TLPAGFMELGESAAQGAERETLEESGARIRLGQLYTVIDVPQVEQVHFFYLAEALGPGLDPGPESLEARYFDEAEIPWDD
LSFRTVVTTLRRYLEDRRKGEFPTHHYSLESHR
>SEQF2266_AEE68585.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTHTAMQTFARVVELGSFAAAADKTDQARSVVTRQVAFLERKYGVRLLNRTTRKLSLTDAGRAFYDRIRPVLAELAELD
LALQAQGSQPAGRLRISAPVSFGVLHLGPAIADYLLRYPEVVIDLDLNDRVVDLVEEGYDVAVRIGPLVDSSLVARPLAP
QQLVACAAPAYLERYGAPAQPEDLRRHRCLHYAYASTGNDWHFEKDGQTHVVRVNATFRANNGDVLRTAALAGHGIILQP
EFLVGEDLRAGRLTALLTDYRHSLITMMAVYPHRRFLSPKVRSFVEHLEKRFGGARQPLESRS
>SEQF2266_AEE68586.1 hypothetical protein BPTD_3399 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIDSRTAPYAVLLLRLALGVMYLAHGLTKLLVFTLPGTAQFFAKVGFAGWLAYPVTYFEIVGGVLLILGIYPRWVAAIAA
VQLLAAATVHAGNGWAFGNPGGGWEYPVFLAVGAAALALLGNGKAALLPRPRA
>SEQF2266_AEE68587.1 hypothetical protein BPTD_3400 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDQLVKDALARWPDVPAVYGWLSLDARGRWHLHPQGDAARGAPGESITSPQILAFIGRNYECDAQGNWFFQNGPQRVYVR
LDAAPLILRRADEFSGLQTHTGQAVTAVRQWWLDDEGRLYASTAAGPGLVEDRELAPLLAQLHVDGQALADVLETGWPEP
GRPPLMVSHPAWPNAAPLHGVASGDVARRLGFVANPAKPA
>SEQF2266_AEE68588.1 hypothetical protein BPTD_3401 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTCGRRNYVRTPMPTLHFPRPSARHGARLLLALVALTLACAPMMARADDDDDDDDYRPRREYKEKYWDGACKVERKWKR
NGEYREKRKCPGYRSGYDYGYAQPAMVPMIPANPAIIISAPPIVIRP
>SEQF2266_AEE68589.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68590.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRQPQSADIEELPLGRTSKSLPEQVADRLMQSIQTGVLQPGERLKEETLSDRFAVSRTTVREAISTLERRGVIERVPRF
GARVREIRADEIEEIFCIRAQLLGLAARRVAEHGDDEILEQLRQQVERLRQLADKPSTSPASYAKVSIETQQLLIQAVGW
KQLGTMYEGLSNQMLWKTSVRGKSLSFQSQQRRRESVGDWQRLLEAVCTRDAAAAEESAKLLLGASYRAVRGQLAS
>SEQF2266_AEE68591.1 thiamine pyrophosphate protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPTLAARTGGRILVDALKVHGVDQAFCVPGESYLPVLDALRDDAQDIRLTVCRQEGGAAFMAEAYGKLTGKPGICFVTR
GPGATNASIGVHTAFQDSTPMILFVGQVGADVAEREAFQEIDYRRMYGQMAKWVASIDDAQRIPEFVHRAHQVALSGRPG
PVVLALPEDVLRATAHAADRVPHRIARACATSADMKRLHELLAAARRPLLIVGGGGWNEAASAAITRYAERAGLPVATAF
RRQDRFDNRHPCYAGHIGLGIAPSLARHVRQADLLLVVGARLADATTDSYALITPEHPGQTLIHVHPDPQELGRVYPADL
PIAADVQAFAAQLDACDNPPARCDAWLRELADDYRTDLAVAPSRRDTDLAQVMHWLNQHLPQNAIVTNGAGNYAGWVHRY
FQYSPQRRQLAPTNGAMGYGVPAAIAAKLAAPARTVVCFAGDGCFMMNGQELATAIQHDAAVVFIVVNNGMFGTIRMHQE
MHYPGRVSGTSLRNPDFVALASAYGAHAERVAHHDDFPAAFERACASGRAALIEIRTDPAAISARRDLPTLAA
>SEQF2266_AEE68592.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRIFEKAALALALVAMPLWAGVACAQQPLRMMVGFPPGGTTDVIARLVAQRLGGELSRSVVVENRAGASGNLAAATVAK
ADPDGNTLLFAPSSHATNASLYTNQSFDTVKSFRAVGMVAVTPYVLVVNPGMQATNLRDFVDYLKRNPGKVEFASASPGT
GQHLAAELFKDEAGVDIMHVPYKGSAAALPDLIAGRVPMMFDNIAVMLPHIQQGTVRPLAITSKTRSRFLPDTPTMAESG
YPDFEVLGWFTLLAPAKTPDATVQAYNDALKKISADPDFVAQLAKLGGEAVARTPAQADAYIAEEVDKWGKVIRTAHINL
N
>SEQF2266_AEE68593.1 putative taurine dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDITVRPLGYAAGAAVSGIDLRQALQPEQLARLRAAWHEHLVLVFPGQDLNAPQLIDFTRHFGDVERNDSVPYYRDPDY
PEVLLVTNKPRDGKPSQTRNTGRNWHSDLSYTDRPAKGSVLMCKEKPPVGGDTMFANMYQAYESLSAPFKRFVDGLHAVH
DISLIKGFDRRDPEQTAALKRRNPPIAHPVVRIHPETGRKCLFVSDRVRTFVGMTEEESRPILDFLNRHATSPEFVYRHR
WSVNDIVMWDNRCTLHIALPDFDQSKPRHMMRCSMLGEPSGYVIEDAPLDEQAARSAIAAVS
>SEQF2266_AEE68594.1 malic enzyme [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKDTDRQAALDYHAYPHPGKISVTATKPLVTQRDLSLAYSPGVAAACEEIVDDPVNVFRYTGRGNLVGVITNGTAVLGLG
NIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKLVEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFH
DDQHGTAITVCAAVVNGLAVAGKRIEDVKLVTSGAGAAALACLDLLVDLGLPLEHIWVTDIEGVVYEGRKKLMDADKERF
ARKTKARTLAEVIEGADVFLGLSAGNVLKPEMVATMAANPLILALANPNPEILPEAAHAVRDDIVMATGRSDYPNQVNNV
LCFPYIFRGALDVGATTITREMEKAAVLAIASLAREEQNEVVAAAYGTYDISFGRDYLIPKPFDPRLIVRIAPAVAKAAM
EGGVATRPIADLDAYAEQLQQFVYHSGAFMKPLFSQAKQIVRDGGRARIVFTEGEDERVLRAVQVIVDEKVAKPILVGRP
QVLLSRIEKFGLRLRLGQDVEVCNPEYDERFHQYWTTYWDMMCRNGITKEMARVEMRRRLTLIGAMMVHLGDADGMICGA
VSGFHDHLRFIDQVIGRKPGAQTYAAMNILLLNERTVALVDTHVNEDPSAEQIAEYTVAAAEEMQRLGLAPKVALLSRSN
FGSGSSASGAKMRHALELVNRQAPGLEIDGEMHGDCALDESLRLRLLPDSPLKGSANLLVCPNVDSGNIAYNLLKTVAGK
NVAVGPILLGANAPVHIVTSSATVRRIINMAALCVLDANRPQ
>SEQF2266_AEE68595.1 LysR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGSPSVDAAEIVRRLTSRLKMRHLQLLLHVRQLGSLTRVAQQLSTSQPAVTNALAELEDMFGAPLFQRTARGMTPTPLG
LVVLARAEAIIHDLRHLVDDMGASASGYTARLHLGVTPFVSSRLIAAAIGRAQRADHRLAASVHDGISGKLLAGLRDHSL
DVVVARAGPALDVEGIVFEPLYVQQPRLIASRRLAARLARRALDWSALAELDWILGVPQTAMRDQVASLFMQAGIRPPAA
TTECHSAKLIGELIAASDRALSIVPADIADELVSVAGVAIVPFSFTWHLPPIAVFMRHESQGSAPHRLFAEALREECRHA
RAG
>SEQF2266_AEE68596.1 binding-protein-dependent transport systems inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLSYTLRRLLMTLPVMLFVALFVFGLLDLAPGDPAALLAGEDATPQDIARIRATLGLDQPFLQRFAEWGWNVLHGDLGTS
LFTGLPVSHMIGQRLVPTFSLMLMTLLVSVVIAIPIGALAAWKHNRLQDRGIMVLAVFSFSVPSFAVGYLLAWIFGLQLR
WFPVQGYVPLATGFWASVHTLVLPALALGSVYVALITRITRATLLETLSQDYIRTARAKGVGNRGLLFRHALKNAAVPII
TVIGSGVALLISGTVVTETVFSIPGLGRLVVDAILWRDYPVIQGVILLFSFMYVLVNLLVDLLYRAFDPRIKY
>SEQF2266_AEE68597.1 binding-protein-dependent transport systems inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNIAGFLKRHPTTAVGGGLLLLLFLMAVCAPWLGTVDPTALSPIHRTRAPSEQFWFGTDLLGRDVYSRVIYGARVSLIV
GFTVAALSTVIGVVIGLAAGFVRWVDAVVMRIMDGFMSIPTILLAIALIALTRASLQNVIIAITIAEVPRVVRLVRGLVL
SLREQPYVEAAVAAGASRLRIVARHIFPNTLAALMVQATYICGVAILAEASLSFIGAGVPPSVPSWGNIMAEGRALWQIK
PHLIAFPAVFLSITILAINMLGDGLRDAVDPRMAKRI
>SEQF2266_AEE68598.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTTTTQSRRVLELENLSIAFGRGVHTFHAVKSLSLHVDRGETLAIVGESGSGKSVTSLAVMRLVEFGGGRIESGRMTFY
RGAGEAVDLAAASEDSMRAMRGNDLGMIFQEPMTSLNPVFTVGAQIVEAIRLHQACDARAAQAAAKRILDQVRIPDSASI
LGRYPHELSGGMRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRELQREMDMGVIFITHDMGVVAEVADRVLV
MRKGDVVENNDVHGLFNAPSHPYTKALMAAVPRLGAMQGTTAPARFALLSDAQARHEAEPPAVAPSDKVVLRVRDLVTRF
DVRGGIFARVKKRVHAVEQVSFDLHAGETLSLVGESGCGKTSTGRSLLRLAKTTRGQIEFDGKPVRQEDPASLRALRRNM
QFVFQDPFASLNPRMRVGDCVKEPMLIHNLYSGAQADRRAAELFERVGLDAAMMQRWPHEFSGGQRQRICIARALSVDPK
VLIADESVSALDVSIQAQIVNLLIDLQRDLGVSYLFISHDMAVVERISHRVAVMYLGQIVEIGPRQAIFENPQHPYTKKL
MQAVPIADPGARRSITLELSELPSPARPVGDEPVVKLLEQAGPGHFVARHRIGGAY
>SEQF2266_AEE68599.1 hypothetical protein BPTD_3414 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSNAPKVAILGFHLESNAFSPLSVEADFLAQCWEQGEDITRLARGASRLPSEVPGFYARMDELGAWTPAPLIVIGAPPG
GPASAGVWRRFLAEAETRLRAALPVDAVYVANHGASSAEGQDDTEGELMGRLRAIVGPGVPIVASHDLHCNVSEQTVQAL
DGLISYRTNPHVDQRERAADAADMIHEILGGTRMVSAYVRLPLTPPSVTLLTSSGPYADLVALGASLIQKPDEGPIANVS
VCSGFVFSDLPKCGLTITVTARGDLQAARRAALRIARAGWADRKRYVANTVEVARAVELARAAGQPLLFADVADNPGGGG
GNTAWLLRAFHEARIPGVVLGVFVDPELAAQAAQLGEGAEFDAVFNRIETDYARRYQARARVLRLTDGEGMGWRGILRGR
KFSLGASCLLELVDSGMRVVVGSLRRQLAEPAMLEMHGIDIARAGHVVVKSRGHYRAGFDEFFPDDRIHDVDSLGLTTPN
LKQIAFKRLPRPVWPLDDAAAWQEPDWAEGL
>SEQF2266_AEE68600.1 LysR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNTALRYFLEVVDAGSLTLAAQKLHVAPSAVSRMVRKLEGEHQAQLFERHARGMVLTEAGQLLKAYARRASLDAERARA
EIRELSQIGQKLIRVSANQAFGRELLPRVIGEFREIEPTVRFELNILQSSEINRRVREGEDDIGLSYNLAPPQDVHVQYA
RRMPLFAVMAPQHPLAGRDMLSMQDIGDYPVVLMGPGSTNRFFIDLCCMHEKIELNIAMTCNNQGAIQTCCQQWGAISFS
GDLTVMTPTERGELVSIPMANSELHQRIMHIQTMADRQLPASVGRFVQALASRINASYADPAWLAAGRGSGAL
>SEQF2266_AEE68601.1 hypothetical protein BPTD_3416 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAARDKHIYIRMIKKRYLATAVVALAVAVAAALYARQDEPEHFDEVVLLCLDDQAMSTVRRTGSVDGILPACQPELAEV
LGEDFGAVDEPTLRAVLATVAAANFAEYGSSSAVACEAIEKSQHLNCGNLVFLMGYLYGGLKEKGIRPIGVDGGAVGNHA
QIMYKSGNNRLLLDPTTGVVAAITFNKLMSGQPVPEEQVRVFRVKAKTIDSFRDRVYRAVVGGGYLPSDLMYMHESLWEL
KTKGSSSVYFTPGGITVRKKLAQAAG
>SEQF2266_AEE68602.1 hypothetical protein BPTD_3417 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTRQHSTQPDPKLDLVLERTIDVPPALVWQAWTQPEHIKHWLTPAPWQTVRCDVDLRPGGRFRFVMRSPEGEEHTHDCCY
LEIVEGSRLVWTNALLPGFRPAGGGGDVPAFTAVIRIEPHDQGTRYTATAMHGTQAGCRQHSDMGFHDGWGAALDQLVAH
ARNMQQAS
>SEQF2266_AEE68603.1 ArsR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNQAAQLSQVFQALSDPTRRAVLERLCQGSAAMSELARPFNMALPSFSQHLDVLERCGLVRSRKSGRVRIYTLAPQPLG
MAEHWMTRQRAIWERRLDQLDLYLQDLKEQKR
>SEQF2266_AEE68604.1 hypothetical protein BPTD_3419 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTWFKRIVIGLVVLVVVAVVGLAIFLLTFDPNAYKYKLEEAVQARYERTLNIEGEIELSLFPRIGLAVQGVSLSEPNSP
DVFASIDSMRLAVAVWPLLSNSLVVDHVTINGFKARVIRGKDSHFNFENLVGGSVQSTDVPGNAAEATAGAITGTAQAIV
NGTVSTPKSMQIDIAGLDLKDGEIQLQDAMSGMAVAITKLNAATGRVTYNQPFDVSLSARVEGGNPRLDAGLTGQAQLTL
DPLAKRYAAQRLDLRMEGRLPGAQAKSLAARGNVAFNGMTSSLDVAGLEILFQGDIVDTATKLTNVEASVAMPKLAVDPH
KTELQIDKLAVRAKGAMPGGPFELAVDAPALNISPTNASGDALSGRVRTQELDASFGLNGISGNAGELDIKEAKLDSTLK
QGERVVKSAFASPVTLNLLQRSIGLSALKGDVNITDPGLPKGSLQIPVIGSVNANLLKDQANARINAVLEGGKFDLSADI
VALSAVPRVTFALAVDTLDLDKLAPPAGASAPPKPAGDGKQDESKPPAKPQPAPAPAAADDSINLSGLVGPTASGTIKIG
QLVMRGLKAEQVAANIKLEKGKLDISTLTAALYGGKLGGVMSVDAVNGNQLVAKMSLAGIAIQPLLSDLAGKDTLSGTGS
LAFDLKTAGANTYAMKSGLAGTMQVRLRDGAIKGINVAQTLRELKAMFRGEAHDPTVQDDQTRQTDFTSLESDLVFNKGV
ATVKRLDMAAPLLRVNQGNPANIDFVRSELDFVARVRVVNTSTGQDGKDLAELRNLTIPLLITGPFDKPVYTLQWREVAG
EALKRGLEKQLKEALTGGEGASGSPAKNIDKALKGILGK
>SEQF2266_AEE68605.1 hypothetical protein BPTD_3420 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTTAYQPIAECGATTQSEAAAYQKRWLVANDAGQWLNRDLCPRLAEVSVELRMGYLVLKAPGMLRLDIPLDVIEDDDSV
RYQMLVGEQTVDVVDEGELAAAWISNHAGVPCRILKVHPDMAEVRWPS
>SEQF2266_AEE68606.1 putative transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAIVAGLVAVLVSFGGTAVLMVQAGHAAGLDAARIGSWLGSICLALGVGGALISLRSRIPVVFAWSTPGAALLVTGLVG
VPFDQAVGAFVLAAALTLACGVFGWIDPIVRRIPAELAAAMLAGVLLNFGMGIFGSIAAQPVLVLSMCAAYLLGRRWAPR
FAVLAVLVVGLAAASSLDLLRLGHVQWAWTEFVWTTPSFTWQAAISLGIPLFVVAMASQNLPGLAILQAAGYRPPASRLV
GLLAAPFGAHSVTLGAIIAALCAGPEAHANPGRRYVAAATYGLTYVLLSVAAGAVAVFFQALPGALIAALAGLALLGAIM
GGMTTAMADPQRREAALVTLLATASGISFWGIGSAFWGLAAGLATHGALAWRRARSA
>SEQF2266_AEE68607.1 ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALKITEECINCDVCEPQCPNEAISMGADYYVIDPDRCTECVGHHDEPQCKVVCPVECIELHPQWQEGQEQLMAKYRRLT
GAA
>SEQF2266_AEE68608.1 phosphopantetheine adenylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIIAVYPGTFDPLTRGHEDLVRRAATLFDKVVVGIAHSRNKKPFFTIEERVDIAREVLGHYPNVEVHSFGGLLKDFVRDQ
NGRVIIRGLRAVSDFEYEFQMAGMNRHLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVERWLQAKAKER
REQSAQGGA
>SEQF2266_AEE68609.1 hypothetical protein BPTD_3424 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPSRPGSKPIRIVGGLYRRTLIPVADAPGLRPTPDRVRETLFNWLNHLWGGEFADKRVLDLFAGSGALGFEAASRGAGQ
VQMVERDRGAAAALRTLRDKLQAGAVRIHAGDAMQVIERMDASRFDLVLLDPPFGQGWLERLWPLLPAVLAEDGLVYVES
ETAPAPPAGFELLREGKAGAVHYRLFQFAAMRKSMNNPALEDGASH
>SEQF2266_AEE68610.1 cell division protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPMFSFFKKKSPPPAAPAQPAPPPEAVDAGSAAPAQPQPAEPQPEPQPQQPPEPQPPVAAAPEAPRKASWLSRLKQGLSR
TGQNIGGLFVGVKVDENLFEELESALIMADAGIEATEKLLAALRARVKKERIDDPAQVKTALRQLLADHLRPLERSFDLG
RAQPLVVMIAGVNGAGKTTSIGKLAHTFQRQGASVLLAAGDTFRAAAREQLVEWGSRNNVTVISQDGGDPAAVAFDSVNA
GRARNVGVVMVDTAGRLPTQLHLMEELKKIRRVIGKAEASAPHEVLLVVDGNTGQNALAQIRAFDAAITLTGLVVTKLDG
TAKGGTLAAVAAGSQGVRPIPVYWIGVGEGLEDLQPFVADEFAAALLAD
>SEQF2266_AEE68611.1 binding-protein-dependent transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTSVTSLEPGHPRTWQRYSGGQKALRFMLYLLLVAAIVQAVRSVEVIPEFLYDAPEQMAALLRRMWPIDWSYYPEGVHA
ALVETLHIATLGTILSVGMAVPVGLLAANNLTPSRTINMLARLILVSSRSVNSLVWALLFIAIFGPGALAGTLAIAFRSI
GFVGKLVGEAIEEAQRGPIEALTATGASKAAVLWYGYWPQIRPSFWSIVLLRWDINVRESAVLGLVGAGGIGMALDTALN
LFQWDRVALVLAAIFIVVVAAEIVITQARKRIL
>SEQF2266_AEE68612.1 binding-protein-dependent transport systems inner membrane component [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGVTVRTANMARRPFSLSWRAKTGVLLVVLYTFYAAAQLDFSWARFETGLGHAATFLARMFPPNFEKPDTLWKGIAESL
EIAVLASVLGILLSLPIGLLGARNLMPAWASWPARALVALCRALRPVIVAILFVKAVGFGALAGILALTVASIGFIGKLF
TEAIEEISLKQVEAVRASGASFGNVIIFGVLPQVFARFVGFATYQFDSNLRNSTMVGIVGAGGIGGTLFSAFQRFDYDFV
AAILLTLIAIIMLGEILAGFVRKVFLDNMGFERILQRRFTAARGLGSTTPLARKGEVDE
>SEQF2266_AEE68613.1 hypothetical protein BPTD_3430 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68614.1 hypothetical protein BPTD_3431 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAKRLLQAAAVTALIFGSYAAQAADAACSNRGDLDNMYCDANKDLVADTPTDKSKLKTPSTLVFTYTPVEDPAVYEDIF
KPFTKHLSECTGKRVVFYQVQSNAAEIEAMRSGRLHVGCFSTGPTAFAVNIAGAVPFAVKGYADEFQGYNLIVIVKKDSP
YQKLTDLKGKKLAHTAPSSNSGHMAPVALFPKEGLTPDKDYKVIFSGKHDQSVMGVNSGDYDAAAVASDVFKRMAERGQV
KEEDFRVIYRSEKFPTSSFAYAHDLEPAFRDKMLKCFYDYRFPDEMKKAFDGADRFYPVTYQKDWAIVREVAESGGEKFN
RAAYDRETAKSKGKQ
>SEQF2266_AEE68615.1 putative transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAAKSTAKPAAAPGNDGRRSIQSVEVGFPLLAALVDAGRPLTLRDLAGAAGMTSAKAHPYLVSFTRVGLVQQDTVTGQY
ELGPFALQMGLVSLQRLDPVRVALPEVDKLQSEIGHTLGIAVLGSHGPTMIHITEASYPVHVNMRKGTVMSMLHTATGQV
FAAWLPPKVAEHYIAREDGDAAVIASLTPRKTTRANLDAMLADIRVHGMARALGNPLPGVDALSVPVFDHTGGIVLALTS
LGPTGLFDASFTGAIARPLLACAQEISRKLGYRGN
>SEQF2266_AEE68616.1 haloacid dehalogenase-like hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQALAAMPAPVAASVRIVLTDIDDTLTTEGRLPAGAYAALERLEQAGIVVVPITGRPAGWCDHIARMWPVRAVVGENGAF
YYAYDRSARRMNAHYWADAATRAANRQALQAIRERVLREVPGTAVASDQDYRVADLAIDFCEDVPALPDSAVGRIVEIFH
EAGAQAKVSSIHVNGWFGDYDKLTMTRTLFEREFGLSIDSALQHTLFIGDSPNDEPMFKFFPISVGVANIQSQLHRIQHR
PAFVAAARGGDGFVEMAERLLANRG
>SEQF2266_AEE68617.1 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAQISPLNAGAAPESFGIASVPEIIAELRAGRIVILVDEEDRENEGDLVMAAEFVTPEAINFMVTHGRGLVCLTLTEER
CRQLDLPLMASRNGTRYGTNFTQSIEAAEGVETGISAADRARTIQVAVARDAQPSDLVQPGHIFPVRAVPGGVLVRAGHT
EAGCDLTAMGGLTPAAVICEILKPDGTMARLPDLVEFAREHKLKIGTIADLIQYRSEHESIIARMGERMMQTPWGDFRCI
AYRDDATRSPHLALVHGNIDPERETLVRVHEPASLFDVLDTGASPHSWSVGQALHAIAASPAGVLVLMNCQSSTEHLFGQ
IANWAGPAERAAAQEGDRFGLRTYGIGAQILRDLNVGRMKLLARPRKMPSMAGFALTITGYDCVPPNLRND
>SEQF2266_AEE68618.1 6,7-dimethyl-8-ribityllumazine synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPYILTPDLNGEGLHIGIVRARFNEEIGQAQLQACLEELGKLGVDERDVMVVSVPGALELGVALARMAESYEFDALIAL
GAVIRGETYHFEVVSNESAAAISRIALETGIPVANGVLTVDTDEQAQARAAGKGADCAQVAVEMANLAAALEPEEDDEDD
EDEDFDDEEDDGR
>SEQF2266_AEE68619.1 transcription antitermination protein NusB [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQARANARSARRRAREFALQGVYAWLLRGGEGTQDAGEIDAHLRDAEDFSEADAQWFKTLLHGVLREAPVLRERFLPYID
RPLAELSPVEHGILLIGSFELMHHVEVPYKVAINEAVELAKSFGGTDGFKFVNGVLDKLAADVRTAEVQAAPRR
>SEQF2266_AEE68620.1 thiamine monophosphate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAGVALASEFDLIARYFTRPAPDGVLGVGDDCALFPVPPGQQVATSTDLLIEGRHFFPDVDPQALGHKALAVNLSDLAA
MGARPVGCLLGLALPGVDEAWLAAFARGFQALADTHACPLIGGDTTRAPQGLLAISVTVFGAVAPGHALRRAAAQPGDDV
WVSGELGAADIAYRLLDRQLPADPLRLAATRAALEWPRPRVELGMALAGLARAGIDISDGLLQDLGHILAASGVAAELRY
DALPVAAALAGLPAETVRRAALGGGDVYELCFTADPAHRQAIRQAAHGAGAPVSRIGRILAGQGLRVLDADGAPLGELPG
GFDHFSDATDQPAPDRRP
>SEQF2266_AEE68621.1 putative phosphatidylglycerophosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQVRTRVSYPSWSWVRARPARLLAFGLGSGLLRPASGTWGTLLAWLSWFVFAPLAPDWALGMGIAAAFAYGCLACGQAGR
ELGVSDHVGMVWDEIVAFWLVLWLVPQTVAAQALAFVLFRVFDIAKPPPIKYFDARIKGGFGVMWDDIVAAAYTLLVMAI
LVRMGVFT
>SEQF2266_AEE68622.1 hypothetical protein BPTD_3439 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLHDTQGRAGLAPTPLTAAAIQGLAEMVGEALLRRDWMMGTAESCTGGLLAGAVTSVAGSSDWFERGFVTYSNAAKVAE
LGVSGETLDHYGAVSEPVALEMANGVLLATPSAQVGVSTTGIAGPGGATPGKPVGMVCFGFAMRAHGGITSRAITHVFPG
DRAQVRNASVEFALRGILEFLGEPVNRG
>SEQF2266_AEE68623.1 orotidine 5-phosphate decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTFLKKLEHAWSASQSLLQVGLDPDPKRFPRELEGKPDAIFQFCRDIVDATAPYACSFKPQIAYFAAHRAEDQLEALCQH
IRAQHPDLPIVLDAKRGDIGSTAENYAREAFERYQAHALTVSPYMGLDSVEPYLAWGDRGVIVLCRTSNPGGSDLQFLKM
ADGQPLYLHVAGLVADKWNANGQCGLVVGATFPNELAAVRQRIGDAVPLLVPGIGAQGGDINATVQAGANSAGAGMMINS
SRAILYASTGEDWRQAAGEAARGLRDAINAVRT
>SEQF2266_AEE68624.1 putative NADH dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTQTPNTGSPHRVVIVGGGAGGLELAAKLGRAHGRERVTLVDSRPFHIWKPSLHEAAAGTLDIHQEGLSYLMLANMCNFT
FAQGELQGIERERRQIQVGPVADPSGQQVLPPRELSYDTLVLAMGSTSNFFNTPGAAEHAVTLDTTENAEQFRLTMLKAM
VQVDLRKVHDPSARLDLVIVGGGATGVELAVELIEASHVVSAYGLPNFRADRDLVITLVEGAPRILSALPEKISRATHAR
LTELGVRVETDCRVAEVGADHVVTADGRRFEATMCLWAAGIEGPPLFRQLGLPLNRLGQLEVNERQESPDPHILALGDCC
AAPWKDGRTVPARAQAAHQQADYLARKLTARLRNAAEPTEAYAYHDHGSLVSLGQGSGVGSLMGKLAGRGLFVSGTLARL
MYMSLHLMHHRAVLGISRTATLALARLLMRRTRPRVKLH
>SEQF2266_AEE68625.1 putative diacylglycerol kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAHTPHPSPFKSTGGLRRILNALRYSLQGLKAAIKYEAAFRQELVLAILLVPAAFFLGRTTDEVFILIASVILVLVAELL
NSAIEALADALSVETHPLLGRAKDLGSAAVMLMLLFTLAVWVAVLISRFVLD
>SEQF2266_AEE68626.1 serum resistance protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLPRQIRLPHLRDIGALLTDSAREWSRHRASSKGAALSLYMVFSLAPMLILVIAVAGAFFGEEAVRSELFSQVRDLTGE
RGAEVIQTVLASAHESGSGWLAALLSICVLVFSATTAFAELKASLDELWDVKEDKSGLQGLVRSRMLSFGLVLVLALFLL
LSLTLNAALGAAKGYYGDLWSTSAFAMAADWLSNLFSFAVVTALFAVVYKLLPSKRIPWLDVIPGAIVTAALFLAGKWGI
GLYLGRGAAVSAYGAAGSLIALLLWIYYSAQIFFFGAVFTRQFAERFGSLRRAAPA
>SEQF2266_AEE68627.1 serum resistance protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYLDRFRQCPSSLQIPRSAWRLHALAAALALAGMARLAPAAAQAPQPPVAGAPHAQDAGQEGEFDHRDNTLIAVFDDGVG
INLDDDPDELGETAPPTLKDIHISVEHKNPMSKPAIGVRVSGAGRALTLAGSTIDATEGGIPAVVRRGGTLELDGVTVAG
GEGMEPMTVSDAGSRLSVRGGVLGGEAPGVGLVRAAQGGQASIIDATLQSILGPALIADGGSISVAGGSIDMDMGPGFPP
PPPPLPGAPLAAHPPLDRVAAVHAGQDGKVTLREVALRAHGPQATGVYAYMPGSEITLQGGTVSVQGDDGAGVVAGAGLL
DALPPGGTVRLDGTTVSTDGANTDAVLVRGDAARAEVVNTVLRTAKSLAAGVSAQHGGRVTLRQTRIETAGAGAEGISVL
GFEPQSGSGPASVDMQGGSITTTGNRAAGIALTHGSARLEGVAVRAEGSGSSAAQLANGTLVVSAGSLASAQSGAISVTD
TPLKLMPGALASSTVSVRLTDGATAQGGNGVFLQQHSTIPVAVALESGALARGDIVADGNKPLDAGISLSVASGAAWHGA
TQVLQSATLGKGGTWVVNADSRVQDMSMRGGRVEFQAPAPEASYKTLTLQTLDGNGVFVLNTNVAAGQNDQLRVTGRADG
QHRVLVRNAGGEADSRGARLGLVHTQGQGNATFRLANVGKAVDLGTWRYSLAEDPKTHVWSLQRAGQALSGAANAAVNAA
DLSSIALAESNALDKRLGELRLRADAGGPWARTFSERQQISNRHARAYDQTVSGLEIGLDRGWSASGGRWYAGGLLGYTY
ADRTYPGDGGGKVKGLHVGGYAAYVGDGGYYLDTVLRLGRYDQQYNIAGTDGGRVTADYRTSGAAWSLEGGRRFELPNDW
FAEPQAEVMLWRTSGKRYRASNGLRVKVDANTATLGRLGLRFGRRIALAGGNIVQPYARLGWTQEFKSTGDVRTNGIGHA
GAGRHGRVELGAGVDAALGKGHNLYASYEYAAGDRINIPWSFHAGYRYSF
>SEQF2266_AEE68628.1 chaperonin GroEL [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAKQVLFADEARVRIVRGVNVLANAVKTTLGPKGRNVVLERSFGAPTVTKDGVSVAKEIELKDKFENIGAQLVKDVASK
TSDNAGDGTTTATVLAQAVVQEGLKYVAAGFNPIDLKRGIDKAVAAAVEELKKLSKPVTTSKEIAQVGSISANSDASIGQ
IIADAMDKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINSPEKQVAALDDPYVLIYDKKVSNIRDLLPVLEQV
AKSSRPLLIIAEDVEGEALATLVVNNIRGILKTTAVKAPGFGDRRKAMLEDIAILTGGTVISEETGMSLEKATLQDLGQA
KRIEVAKENTTIIDGAGDGKSIEARVKQIRAQIEEATSDYDREKLQERVAKLAGGVAVIRVGAATEVEMKEKKARVEDAL
HATRAAVEEGVVPGGGVALLRAKQAITGLKGDTADQNAGIKLILRAVEEPLRTIVTNAGDEASVVVNTVLNGKGNYGYNA
ATGEYGDLVEQGVLDPTKVTRTALQNAASVASLLLTAEAAVVELMENKPAAAPAMPGGMGGMGGMDF
>SEQF2266_AEE68629.1 co-chaperonin GroES [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALRPLHDRVIVKRLDNERKTASGIVIPDSAAEKPDQGEVVAVGPGKKTEDGKILPVDLKAGDKVLFGKYAGQTVKVDGE
ELLVIREDEILAVIQ
>SEQF2266_AEE68630.1 hypothetical protein BPTD_3447 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHSKALLLVSMEPPAGMEAEFNDWYDTEHLPERAGLPGFETALRYVCVAGWPRYLALYDLSNIEVLDDKPYQDVSGERF
SPWSKRVLNRVRGQSRMAAQQVYPRQAITQRAPRLLLLRFVGLTLQHEADLVSTLRSAFSNRAGVQQLRVYREPADNGPR
FLALVEAHESFSHQEKTSGLGPYARHLDMINEYTPYWTRGALHGVYPES
>SEQF2266_AEE68631.1 hypothetical protein BPTD_3448 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHKSHYQRFIMPTAIRIGVLIPENNTRVAEELPLWLPGCRLEVVKIPRDKGLLNAAALPAYKENALALAREKLGTGDIDV
VAYGCTAAGFLLGPVGDQELARQLRENTGKPVATIASSMTSVLTQDGIRKVAVVTPYSDAVNAQLKGFISNAGIEIAAFD
SLYAKDVDELGRISAQAVSHIARQTMNDDCEAMFIACAQLPTFNVLHQLETEFGRPVYSSIQAMATQIQAIAS
>SEQF2266_AEE68632.1 hypothetical protein BPTD_3449 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKALLLAMMTPPGDLEEEFNEWYDTEHFPRLSTVPGFDRSSRYVAVKGWPKYVALYDLASVDALEHPQYTRAPGARFSP
WAQRILTKLHGQYRFSGDQIYPGPALMGDRGRPLQVAVMRFREMPGAHEVALIEGLQAIVDSSEDLLQARVFRGSGPLQG
DYIALVECRAHDPRIPVTASALGPAADHLDLMTFYIPYWRRGYVPSVFEAQ
>SEQF2266_AEE68633.1 putative FAD-binding dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPVVSEASPERWDDETDVLVIGSGAGGLSAALFAAQAGLRVLICEKLAYVGGTTATSGGGIWVPGTKAGLAAGDTLEAA
RTYLKALLGDFYQEEVIDTYLATGGKVIDFLNENTEVKFDLSSWPDYRSSLPGGATRGRSLFPQPFDGKKLGRNFSLLHP
PLHRLMVLGGLMLGPEEVHDFLRPFSSPRALMRVLRKLLRYGMDRIRYARGTDLRSGNALAARLLYSVDKLGCRILTQAD
LESLAIDHDRVIGATVVVGGVPKRIRASKAVLLATGGFAHNQEMLRRYGPATPHRFSLCNPACTGAGIQAALDAGASVDR
ELSSVGFWTPASASREKNGADTPVIYGYLDRGRPGVIAVNEQGERFVNEANSYHDIVTAIFANGGADGKPFYFITDREFV
RRHGLGLIRPWPWNRSLRPWIRRGYITVASTLDKLGPKIGIDPGALAAAVQRHNQSARTGQDPDFHKGASAYNRMFGHNM
TWPNPNLAPIETPPFVALRIHPATIGTAMGLKTSASGQALNAAGQPISGLYACGNNQASPFRGFYPGGGSTLGPAIVGAY
LAVQSLSKP
>SEQF2266_AEE68634.1 hypothetical protein BPTD_3451 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIKLMLAGLAALMPMLSMASDYPSKPVTLIAGFAAGGPTDVMARAFAQQLAAELGVPIVVENRPGADSLLASQAVRNAKP
DGYTIYLASSAHAINPSLFKDAKFKVRDDFTPISTIGEVPNVVAIPTDLPARTLKEFIDYAKARDGQLNYATTASITYLQ
TALMLKSAGLNLQRIPYKGAAPAAVALMSGDVQFMMSGIGPMVPQIQSQKIRALAVTSAKRSALLPDLPTAIEAGLPGFT
STVWYALLAPANVPPDIVKCLNESTRAALQNPDLIAKLTAQGVEQRGSSPEELSQFLAAEEAKWMATVDELGARQQ
>SEQF2266_AEE68635.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPNTIHQDEGRPIVNSNDHDSPAESRASGVLNLTHLRTLVAVVQEGHLTRAAERLRISQPAASHHLRSLEQQFGLPLFTR
TPQGVVPTAAGLQLSEQAARLLASSLELLSTASELRGSASGRIAIGTIEDPSVHAALPSLIKWFHEHYPLIELSIESRNS
SSIRQGILTGEINAGFYVSCTNEANLREYEIGQRELVVVAPQSWRERVATATWPELAKLPWVMTTTGSAHSEITAQLFRS
HNITIRPALEVNTERLLRAMVSQGVGLGFTRREFAEAEQARGAFFIVPISVHRTTMHFAYARSAETDPLIQILSRGLATV
LPVAERLIPSTAKPAEK
>SEQF2266_AEE68636.1 putative FAD-binding dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKDVTPARADYPWDGERDVIVIGSGCAGLSAALLAAKKSLDVVLCEKSSQVGGTTASAGGVMWIPNSREARAAGVDDSSE
QVRVYLRALMGAYYRADLVDPYLKSAPLAAQAIQEDTQVRLKLMPAMSDYHASLPGGKAGGRSLEPERFDGRRLGADFEL
VRAPIKRLMLLGGLYIDKRRIDEFLNPFGSFRNFIGVIRTLARYAIDRTRFSRGTDIGAGNAFVASALLSLRERGVPIWL
NSPMVSLVRNPQGGVAGVAICRDGKLQRIRARKGVILAAGGFPRNAALLEELAGGFPHDQSVGYEGNVGDTLQAARQAGA
AIDADLASPCWWTPTSRNKEADGSMSTVLYGYLDRSRPGMIAVNAAGKRFVNDSDSYHDIVYAMFKDGVTPDSRFYLICD
RRFVWKRGLGNLIKPYCLSLGRYVRSGYISTGRSIRELAAAIGIDPDALEVTVTRHNGFCETGVDLDFGKGGNPYNRMFG
DPRVKPNPNLLAVRHAPFFALRIYPGTLGTILGLKATADAQVVGQDGEAIPGLYACGNDMSSVFRGFYPGAGATLGPGLV
FAYRAIEHLARSSGGSAAQSA
>SEQF2266_AEE68637.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68638.1 hypothetical protein BPTD_3455 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLPVDGLIASFDVDAQKSFTPLCPDELPVPDGHAIVPELNAQAAHADLRLGSKDAHSPHAIWRATADQPMFSPVAGANV
DVRWNMHCVPGTRGFELLDGLPAPAAYDFFVWKGVEPDMHPYGSCYHDLAERQPTGVIEFLRARDVRCVLVGGLALDYCV
KVTALQLRRAGLEVVVNLAACRGIAAATCEQARRELSQAGVRTVPHAGVLVRAGR
>SEQF2266_AEE68639.1 hypothetical protein BPTD_3456 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPSPEILALRWKDTCAHYSPHEWVAARNVVTANKAALADYFYECMLADPNAAFFLSDQLVKTKLHASMQDWLESVYAAA
PTEEYERTVAFQRKVGEVHARIDIPVHLVTRGACALIRRICELLDRDASLSAAQAAATCRYVADVTMTAVEMMCHAYSVS
HDRNARAEEGYRLLALSQNVGAERERQRAALLDWENQLMFGLSVGKPWDELPPIRKSEFGLWFIHKAAHAFEGAAESRSV
SSQLQHIDQLLADAQQTQPPPDQRLAILHSVRDATKAIGFLIDGLFEQAGNLESGRDTLTRLLNRKYLHVVLSKEVAYAR
KTGVPLSVLVADIDYFKSINDAHGHDAGDFVLQQVASLIASYSRGGDYTFRLGGEEFLVVLVDADGTQALNVAEALRRRI
QEKATVLPDGGEVRLTLSIGVAAHDRHPDYQRLLKRADQALYAAKSGGRNRCVLANAGPAEPSQRPDAVAQSGQH
>SEQF2266_AEE68640.1 hypothetical protein BPTD_3457 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQTESLPRSEADTRACRALAAALRARDPSTAIHSGRVAALAGELGRAYGLDGMAIRRLELGASLHDIGKLGVADRVLHHP
GRLLGEDWTHMQEHSVLGERIIAATGLDDGAAIGRIVRHHHEHYDGSGYPDGLAGEAIPLEARLIALVDAYDAITAHRPY
RPPVPHDRTMAMLEAEQGARTDPQAFTIFARMIERSQWRAG
>SEQF2266_AEE68641.1 hypothetical protein BPTD_3458 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKLTAKAASVPANGAPAAAVDWRSLLEFHSWRCPGRAVLNMQTDVNINSLAALGLMEEIFANYHAYRVAKQAGDTGEMA
LRRAKIETLAAEQRRVIAAVCRDTGAQ
>SEQF2266_AEE68642.1 hypothetical protein BPTD_3459 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MENQEIMVAFAQAIQQVTAKVSALETTVQCLIAAQPAEQREQFGAALRQAASGLLAESDQRPLTGSALSHLKLAIDAYLE
AAGQHPLQ
>SEQF2266_AEE68643.1 hypothetical protein BPTD_3460 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEPAIAWRRVDDYCWVGPPGWTICRVWLDGSYQYELWFSRGDAGTIYGMRASLEGAQHLYMQKLG
>SEQF2266_AEE68644.1 hypothetical protein BPTD_3461 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGRGKIDAERRCGLMKTEQKRGFLDRFFPAGIRPACPKCGHQGFIVLHDDAVVNADKPIAIVACASEDCHAALGVLPAS
AVWDE
>SEQF2266_AEE68645.1 hypothetical protein BPTD_3463 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAHTPTMLAAAAPFMPEATGVDPALDALLAGLQAHPARIDPKYLYDALGSSLFAAITQLPEYYPTRCEAEIFATHLEAIA
RHTGPVRTLIDLGAGDCAKAERLLPCLRPQRYVPIDISTDFLGQAVARVRRAHPWLDVLPLGRDLNAGLDLPEAIDAQGR
LFFYPGSSIGNLDPDAALALLASLRAQAGVSGGLLIGVDRVKARAIVEPAYDDALHLTGAFNLNLLRHVNSVLGSDFDVR
DWTHVALYNEPRSRMEMHLQARSDIRVRWPGGQRRFQADERIHTENSYKYTIERFVDLLRRAGYGDIRYWSDARDWFSVF
SARA
>SEQF2266_AEE68646.1 hypothetical protein BPTD_3464 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSIVVARFDSVPSARSAAHALVGDGFREEAISILYGDPDRTGRRMSRPAWRFGPDLRTRAARWRAIVSAAALAAIGTLG
GVIVPVLTGYGRVGMVVGAALGAYAGALAGACWMASGLRRARAEAAYAGQLARDRVVLLAVQVHPDDEEAAAALLRDAGG
LQVEKARSRWWPGARGQSTPTGWRTRAPRPPAQRTQWQP
>SEQF2266_AEE68647.1 putative phospholipase D family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATLRRGFACRLARQVAVMFMLAALGACATVPGMQGLRERRAQAGLSTDYGWQSLQRSHTIVTDATGGDGDDAMARHLAV
EAAISGAPLVAGNQVRLLADGPATYRSMLDAIAQARRYIHMETYIFEDDEAGQRFADALMAARQRGVEVAVMVDAVGTLN
TPRQWFERLKQGGIKVAVFNPVNPARAGLGWAPNQRNHRKLLVVDGQVGFLGGLNISSVYSSGSRSGSGSGRAAQAPGPA
ASRADTAPWRDTHIAVRGPAVAEIERVIQDGWLRQTGAPLGGGAVRLSVPAPGDLHVRILANEPNERDGYTVYLTLMSAF
ESARQSIHITMAYFVPDPAFVRVLADAARRGVDVALVLPGFSDSSLVWYAGRSHYQALLDAGVKLYERRDALLHAKTAVV
DGVWSTVGSSNMDWRSFALNYELNAVIVGARFGAEMEALFERDRAAAVPIDPRNWADRGADDRFMEAFSRLFERWL
>SEQF2266_AEE68648.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHN
>SEQF2266_AEE68649.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHT
>SEQF2266_AEE68650.1 hypothetical protein BPTD_3468 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNWIAGRYTTFALMLIGAALTSALAVHSSRAWLWAAVPFVLLSLLGVYDLLQTRHAIRRNYPVLGNLRFLFELIRPEIRQ
YFLEDDTHASPFSRAQRSIVYQRAKQDIDKRPFGTQEDVYGDRYEWINHSMTPAHVADADFRVTVGGPECRQPYSMSAFN
ISAMSFGALSANAVLALNEGARIGDFAHDTGEGGISRYHRERGGSLVWNIGSGYFGCRDAHGAFSEEAFVKNACTPQVKM
IEIKLSQGAKPGHGGILPAGKVTPEIAEARGVPAWQDCNSPSSHSAFDSPVGLLHFVARLRELSGGKPVGFKFCVGHPWE
WFAIVKAMLQTNITPDFIVVDGAEGGTGAAPVEFVDHVGTPLREALRLVHNTLIGVNLRDRIKLGASGKIITAFDMARAM
AMGADWCNAARGFMFAIGCIQAQACHTGKCPTGVTTQDPLRQRALVVPDKAQRVANFHGNTLHALAELLGAAGLTHPGQL
RPHHIARRISSSEVRLLSALFPELAPGELLRGEFRHHVFQVGWGMAQADSFQPAMDISAALAALRPAGAPAHA
>SEQF2266_AEE68651.1 hypothetical protein BPTD_3469 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPPVLYCNDPGRASALSLFLHPLRDVIMSINTSTLDLPSALPPIRINHKPLWAALLLVLAGAAYLLQSVGWRQSALWVVG
ALLGVTLYHASFGFTQAWRVFVSDRRGAGLRAQMVMLAVGVLLFFPFLAQGTLWGQPVSGFVSPSGVSVVLGAFLFGIGM
QLGGGCASGTLFAVGGGNTRMLVTLLFFIVGSVIATANFGWWSALPALPPTSLIKSWGLPGALLANLAVFALIAWTTTVL
EKRRHGQLISHAARTSRTPSLLQGPWPMVWGGIALVVLNFATLALAGRPWGITSAFALWGAKALDVLGGDVASWAYWSRQ
QAALAAPVRQDITSVMDIGLMLGALAAASAAGKFAPVWKVPARSLLAAVVGGLLLGYGARLAFGCNIGAYFSGILSGSLH
AWLWLPAAFLGSALGVRLRPWFGLAVEKTPAASSC
>SEQF2266_AEE68652.1 hypothetical protein BPTD_3470 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQAVLTAALPVFALILTGWLAARWRVLGPSATDALNRYVVYLSLPALLFRAMAQADLRQLADYWDFTAAVAGGIALTFGA
AILACRRDGARLTDLSLEGLATSYGNAGYMGIPLCLALLGPASLAPAIITTLLTACVLFGVAIALIEFDQHRDRHWSATL
LKVARALLRNPLLAAPLLGLACAAAGITLPAGLDNYAALLGASASPCALVTIGLFLAQSQPGGDRGTVGLMVGGKLLLHP
AVTAVLAFAVFDMPPLWAWCAVLMAALPIGTGPFMLAQLYGRDARPSSRAILLSTVLSVPTITALVAWIGRQPLG
>SEQF2266_AEE68653.1 putative acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPQTAAPLRIVLGTWDRLREDATTVRFEVFVAEQRVPEDIELDDFDPLSVHAVAYGADGAPLGTGRLLPDGHIERMAVRK
RARGLGVGGRILDALIEQGHGDGHRMLVLHAQSHARGFYEAHGFQAEGDEFVEAGIAHVAMTRELAR
>SEQF2266_AEE68654.1 hypothetical protein BPTD_3472 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRPVCARCARPRSHCLCALIPALSCRTRVLFLQHPAEARHALNTARLAALGLRQAELHVGERFDPALWRRPGMRSWLLF
PGEAAREPGPVGEGGPLLLVVPDGSWRQARGLVAGNPDLASLPRLALPADGVSAYRVRHADLPGALSTIEAVVRVLNALE
APARFDALLAPFHALVQGQVRAMGDEVYQRHHVRRAGRRGKSG
>SEQF2266_AEE68655.1 putative ribonuclease R [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKRSKNESNNNRSTPVLPDVPADFDPDVPSREAILTALRSAGAPLSPAELAERMGVERPATLVGFERRLGAMERDGQLL
PNRKGVLLLATKLDFVAGRVQGHRDGFGFLVRDDGGPDIFLSPREMLKVLHGDRVLVKPSGEYRGKPEGAIVEVIERRTN
KLVGRFLHEHGLSIVVPEDQRIKHDILIPPSDTNGAQHGQVVSVQIMEQPTRHTQPLGRVYEVLGEIDDPGMEIEIAVRK
FDVPVDFSEPANKQAARLPDSVRKTDLKQRVDLRDVPLITIDGEDARDFDDAVYCEPVELGTGQRKRPAWRLLVAIADVS
NYVRPNDALDDDAYERGTSVYFPRRVIPMLPEVLSNGLCSLNPNVDRLVLVCDMVIPATGAKAGTVTAYQFYNAVMHSHA
RTTYTSIWEALQQPGGPAAAALGAIMPHVRHLHELYQLLSQQRRKRGAIDFDTVETRIVCNELGRIEQIVPMVRNDAHKL
IEECMLAANTCAADFMSRSKHPGLYRIHEGPTPERLQSLRDFLRTMGLSLGGGDEPTAKDYGEFLDSVRGRPDYPLLQTM
CLRSMQQAIYSPDNLGHFGLAYPAYTHFTSPIRRYPDLLTHRVIKALLEGQRYMPELEDQPIVIGRSQREHEHAVWEKLG
LILSGSERRADEASRDVEAWLKCWFVKERVGEDFSGTVTGVASFGIFVTLDTLHVEGLVHVSELGGEYFQFNDALHELRG
ERTGMRYRLTDKVQVQVSRVDLEARRIEFRLVKGTSFDALRKAAARGSDEGRRVKKAAAPKPAALKGQTAKQRRAEAKQA
SKPANTPKAAKSAGASAQKKPARARH
>SEQF2266_AEE68656.1 putative tRNA/rRNA methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASTQVLAGFHAVVARLRHAPESIKEIYVEASRRDKRMQTFLEQAERAGRRVHPVAAERLDGLARGTRHQGVVAVAEERS
LAVGIDEVLDVIEGPALLLILDGVTDPHNLGACLRTADAAGVHAVIAPRDRAVGLNATVQRVACGAADTVPYLTVTNLAR
TMRELKERDVWLVGTDDQAGESMHQVDARRSMAWVMGAEGEGMRRLTRETCDQLVRIPMLGSVESLNVSVASAVCLYESV
RQRQG
>SEQF2266_AEE68657.1 hypothetical protein BPTD_3475 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHQNGFTTTIVHSDRDQSAEHGAVHKPMHPSSEYVYEDARELAAVFQGKAGFTYARQGTPTTTALEARITRMEAGKSTVS
FATGMAALAAIFTTLLRRGDHLVSSQYVFGNTNSLLNTLMELGVEVTMVDATDVRQVRDALRPNTRMVFTETIANPGTQI
ANLAGMGALCRERGLVYVVDNTLTSPWMFRPVEVGASLVMNSLSKYIAGHGHALGGAVTDTGLYDWSGYANIYESYRKGA
PTGWGLTQIKKKGLRDMGGTLAAEPAHRIAIGTETLALRMARHCSNALALATFLQGHPGVARVHYPGLSSHAQHQRASEL
FDGRYGGLLGVELAEGIDCFDFLNRLRIVLMATHLGDTRSLALPAAHTIYYEMGAEKRAQMGIADSLIRVSVGIEDEADL
LFDFDQALRGCLQS
>SEQF2266_AEE68658.1 putative hydroxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIQIADLFTPAEAAQIRARLEAADWVDGKVTAGYQSAQVKHNRQLSEQHPLAQELGGLILQRLAANNLFMSAALPRKIF
PPLFNRYEGGEAFGYHVDNALRPVPGTAERVRTDLSATLFFSEPDSYDGGELVVDDTYGPRTVKLPAGHMVLYPGTSLHK
VTPVTRGARISAFFWLQSLVREDSQRSLLLEMDVAIQRLNQDTPGHASIVQLTGVYHNLLRRWTDV
>SEQF2266_AEE68659.1 DNA-binding protein HU-beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKTELIDHIASKADISKAAAGRSLDALIGAVKTTLKKGGTVTLVGFGTFAVSARAARTGRNPRTGETIKIKKAKVPKFR
PGKALKDAVN
>SEQF2266_AEE68660.1 siderophore-mediated iron transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPSPQSGRSFSSHTSLALRAGAGFTVLALHAAVIGAVFLSKTERPELLEPEAVMVSIIEAPLPQLAQAEPTPEPPTPVEE
TPPEPEPVIEPEPEPEPEPVVEPEPEPEPVVEKPPEPAPKPKPKPKPKPKPKPQPKPEVPPEPKKIETPPAGAPQGAQQV
TQAPRQAPPPDEPIMVSSVEYQGARPMPVYPMASKRLREEGRVVVLVEISTQGLVDRASIDTSSGFSRLDESALAAARKA
RFKPLTRNGVAYPAKAKLPFDFVMRN
>SEQF2266_AEE68661.1 MotA/TolQ/ExbB proton channel family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNAINTATLVAQAATPSAAATPDAPAAAPLAQQAGEAAGAAAQTGAEALNQAAQAGTEAVNQAAQALSAAAPAVPPAPL
ATPDMGFLHFVAQSDFVGKTLFIILIVMSLVTWYLIVVKVVGNMGMRKRAAHFLNKFWNASSLEQVENEIVTHGARDPFS
HLASHAMHAQQHHAKFGATKLEESGSNGEFVSRTMRKVIDEETAKLENGLTVLASVGSTAPFVGLFGTVWGVYHALVGIG
LSDGVTINRIAGPVGEALIMTGLGLAVAIPAVLAYNAFVRNNRVFLSRLDAFAHDLFAFLTTGQQVAVSDGKVRALRRQH
GRGSE
>SEQF2266_AEE68662.1 biopolymer transport protein ExbD/TolR [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAFGSFDNKGSGSHTVSEINMVPLIDVMLVLLVIFIITAPLLAHSIRINIPQVSAEQIEEEPKTIDLAIDANGALFWDEK
PVSIDDLPNRFKAIAGDKPQAEIRIRADQATRYETLAQVMASARRSGMTRIGFITSPAPQGAPGEAGASAAPAAP
>SEQF2266_AEE68663.1 response regulator protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVLVIEDDTTLGHALQEFLADQGYAVDWLTEGDKVLGALAGQPYDLLLLDLNLPGMSGLDVLRQLRQDGNQVPVLILTA
RDGLDDRVAGLDAGADDYVTKPFDLPELAARVRALGRRRSGQAQPQIEVGPLVFDTVGREVRANGTRLALSVRELSVLEM
LMARSGRVVTKRQIVNSLSAWDADFSENAVEVYVYRLRKRLEGSGASIQTVRGFGYMLDVEAA
>SEQF2266_AEE68664.1 sensor kinase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSLPPTPPPPDPVGWKLPRGSLARHLVLRLMPPVLLLVLLDLAATWVITHKIDMSIWMLEDFFWLMVVGQIVLIALFTG
VIIRGVRSGLRSVNHLAEEIRQRSIDDMQPMEVAGLPAEIAPLVTHINDLLGRLDASLAAQRRFIGHAAHQLRTPLSGLR
LESELMLARPLPEDVRMRAERIKAVSDRMIRLGQQLLVMARADPDARPQDRFIRLDLCEWVRASGAEWIPRVRAAQAEID
LVAPEQPVWIDGDPLLLDEMLGNLIDNALRYGKPRGRICLTIGVNPPALIIEDDGPGISPQERDSVFEAFYRAPDAKAGG
SGLGLAIVREIAHAHGAWWKLSSRPEYAGTRLSVVFPGPRIGTQLTRQERAS
>SEQF2266_AEE68665.1 putative potassium uptake protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHTAAGAPRDAKTAIHAPSSRMALMLGALGVVYGDIGTSPLYTLRACLNTIDDLQPAHVLGVLSILFWLLMIVVSLKYV
TLVLRADNRGEGGTLALLELAVRGREGRARWLLIVLGIFGAALFYGDSMITPAISVLSALEGISIVSHTLEPWVVPVALV
VLVALFAIQSHGTGAVGKLFGPIMALWFATLAVLGGYQIWLTPEVLAALNPVWALRFIAEFPVMSFLLLGAVVLALTGAE
ALYADMGHFGRPAIRRAWFAMVLPALTLCYFGQGALLLRDPAAIRNPFFLMAPEWGLAALVGLATVATVVASQAVISGAF
SVTRQAVQLGFWPRMQILHTSAVEKGQIYLPQVNALLLCAVLVLVLLFRNSENLAAAYGFAVTGTMLTTSVLAFAVLPRD
STGGKRVLWMVLLGALLVIDILLFGANIFKIHEGGWLPLLVGVVVFTLMMTWRRGRRLLADMQARDRQPLREFMTQLEAF
PPARVQGTAIFMTMNAGNVPPALLHNLKHNKVLHDHVLFLSIRVADVPYVSEDERFEMHKISASSWQASINYGFKEDPDV
PDALRQVAEAYPEIDLEPMRTSFYLSRQTVVAARRPAMARWRRALFAFMARNSTRSTRFFKIPPNRVVEMGMQVEL
>SEQF2266_AEE68666.1 argininosuccinate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTILPNLPTGQKVGIAFSGGLDTSAALLWMRQKGAVPYAYTANLGQPDEPDYDEIPRRAMQYGAEAARLVDCRAQLVAE
GIAALQAGAFHISTAGLTYFNTTPIGRAVTGTMLVAAMKEDGVNIWGDGSTFKGNDIERFYRYGLLTNPDLKIYKPWLDQ
TFIDELGGRAEMSEYMRQAGFDYKMSAEKAYSTDSNMLGATHEAKDLELLSAGIRIVQPIMGVAFWQDSVQIKAEEVTVR
FEEGQPVALNGVEYADPVELLLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGLALLFIAYERLVTGIHNEDTIEQY
RENGRKLGRLLYQGRWFDPQAIMLRETAQRWVARAITGEVTLELRRGNDYSLLNTESANLTYAPERLSMEKVENAPFTPA
DRIGQLTMRNLDIVDTREKLFTYVKTGLLAPSAGSALPQIKDGKK
>SEQF2266_AEE68667.1 ornithine carbamoyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPPTTQNGPLRHFLQFKDFSPAEIAYVLERTRIIKDKFKRYEPHMPLHDRTLAMVFEKASTRTRVSFEAGMYQMGGSVI
NLTSNDSQLGRSEPIEDTARVISRMVDIVMIRTFEQTRIERFASHSRVPVINGLTNEYHPCQILADIFTYIEHRGPIAGK
TVAWIGDANNMSYTWLQAAEMLGFTLHVSTPAGYELDPARIGAPAAGVLKQFKDPMQACQGAHLVTTDVWTSMGYEAENE
ERRAAFADWCVDAEMMAAADPQAVFMHCLPAHRGEEVTGEVIDGAQSVVWDEAENRLHVQKALMEFLLLGQLA
>SEQF2266_AEE68668.1 acetylornithine aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSALANIYARLPVSFTHGRGVWLWDTGERRYLDALAGIGVSCLGHGHPGLVAAISEQAARLIHTSNIYEVPQQAALARR
LAELSGMSEVLFNNSGSEANEAAIKLARYYGYKQGNTHAHIITMDSSWHGRTLATLAATGSDKARQGFGPMPSGFIQVPY
NDLPAIRAAGEAEPRVTAVLLEVLQGEGGIRPSDMAFLQGVRQLCTERGWLLMIDEVQSGIGRTGKWFAHQWADIRPDVM
TLAKGLAGGVPIGAMLAAGPAAGVFAPGSHGTTFGGGPLACAAGLAVIDAIEQEGLLGNAHEVGAHLHAALASELAGAPG
VIEVRGRGLMLGIELDRPCGILATRAMEAGLLINVTRERVVRLLPPLILSGEEADQIVRILVPLIKQFLAQQQ
>SEQF2266_AEE68669.1 hypothetical protein BPTD_3487 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATRVKQFVIHGVTESGVRFRPSDWAERLAGVMAQFRPPGSAGNHLTYSPYVLPVVIDGVRSVVVDQRLRELEPLAYKFV
VDFAHDNHLKTEEREA
>SEQF2266_AEE68670.1 LysR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDRFDQYRVFAQVAEMGSFIKAAHTLELPRASVSAAVQQLEGQVGARLLHRTTRQVRLTADGTQLLERIRPLLAEVEDID
QLFQASQRQAAGRLNIDVPSRIARRLVAPALPALLRRHPRLQLALGSGDRAIDLVREGVDCAVRIGVLHSSSLVVRPLGS
LALINCASPAYLREHGEPGHPDELAAGHWTVGYASPQTGRALPWECATPRGGTNLVEAASRVVVNNAESYIACCLAGLGL
IQIPRYDVQHLLDGGQLVEVMPDRRAASMPVALLYPHRRQRSRRLAVFLEWFEALMQPHLEA
>SEQF2266_AEE68671.1 short chain dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADHSIQGKVALIAGGAKNLGGLIARDLAAHGARAIAIHYNSPASKADADATVAALQAAGAQAVALQGDLTTAAAVEKLY
ADAVAAVGRPDIAINTVGKVLKKPFSEISEAEYDEMAAVNAKSAFFFLKEAGRHVNDHGKIVTLVTSLLGAFTPFYSAYA
GTKAPVEHYTRAAAKEFGARGISVTAVGPGPMDTPFFYGQESPEAVAYHQSAAALSPHSPTGLTHIEDVVPFIRHLVSDG
W
>SEQF2266_AEE68672.1 putative D-isomer specific 2-hydroxyacid dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTKHRIIQVGSLAGSPTANRRLADEYDVLELWQQADRAAALARHGKGVTALVTSANFGADAALIDALPDLKAICSWGVG
YETIDVDAARKRGVLVSNTPDVLTDCVADLAWGLLISGARRMAQGDRFVRAGQWGQVHGSIPLGTRVSGKNLGIIGLGRI
GEAIARRGDGFDMQVRYHNRRRRDDVSYGYESSLADLARWADFLVVATVGGPSTRHLVNQEVLEALGPKGLIINIARGPV
IDEAALVAALQAGKLGGAALDVFEHEPLVPDALKASDDTVLLPHISSATFETRMAMENLMLDNLASFFKTGDVITPV
>SEQF2266_AEE68673.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKLKSLLAAAGMAACAVGAAHAASYPDKPITMIVPFVPGGSSDITARAVTPGMTKILGQSFVVENKPGANSAIGAQALA
RSTPDGYTMMVGSIGTFAINEALYKKLAYNPSKDFSYLTQAVRNPNVLVAPPSFPANTVAELIDYARKNPGKVSYASSGT
GSSDHLSAILFRQRTDTTGVDVPYKGGGAAIADLLGAQVNVSFQNLGAVQTHIKGGKLKALAITGDKRVGELPDVPTLAE
AGVKDMVVYSWQGFAVPKDTPPAIVKQLAEALRTTLRDPQVEKTLQGLGFEVVANTPAEFSRFQQDEVKRWREVIEKGGI
QLE
>SEQF2266_AEE68674.1 hypothetical protein BPTD_3492 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFAIPTNRVRGVLAALRQGSVRARLQEQGARPSGNTLEPFKAFMADEARKRAQVVRQSGATVD
>SEQF2266_AEE68675.1 hypothetical protein BPTD_3493 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTTPVTPDDLQRSVIAVQPLARHADLTLNPAANQAVLRHLEAGGVRSVMYGGNANFYHVQVSEYAQLLDFLAESAGPDT
WVLPSAGPDYGKLMDQTAILRTRDFPTAMLLPMSFPYTDAGLADGIRRFSDAMDRPAVVYIKSSDYLAPATVARLIGEGR
IAALKYAVVREDPARDPYLDALLKEVDPRWIVSGIGERPAIVHFRQFGLRSFTSGSVCVAPRGSMRLLHLLHQGDFEAAE
QVRAAYIPLEDCRDGISPIRVLHDAVTLAGVADMGPMLPLLSGLDPADRERVAPVARALLAGDRQ
>SEQF2266_AEE68676.1 GntR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MILARGAPRDDVRWRNRSDQSGVPVARKQESAKSAAVDADGGVALHLERGQRVRLADQLYGQIFDQIASGRLNVGDKLPS
EHEICEKFGVSRPVVREALLRLRADGLVTAHQGLGTFVSHQPAPRLKTFSDVQNVGAYLRAQEVRVALEGDAARLAALRR
TDEQLHKIGEAHAAFVEELEHGRVSPEADLAFHASIAEASGNDFYLGVLETIHESISGFMRLTLSLTRTGSRQRAQRVAD
EHAAILGAIREQDAERARIAMQFHLGQARHRLVDRDKD
>SEQF2266_AEE68677.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIVPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68678.1 AraC family transcription regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKPAAEAISVAHARAPAVVTRRNRYPADAHVKPHWHDRAQFLCGSSGVMRVATRRRLWVVPPMRALWIPARTVHEIRMS
SAVDMRSLYIDAALVRGMPDDCAVLDMTALMRELVVRASTDAPSTRDAPQRHEASDGALDEEYGLLSALMVAELRRLPRC
GLDLPLPESAALRGLCERALADLSAFDSAQAQARRLKLSARTLYRRFLDETGLSFARWIQQARLLDAVRRLGDGQAVTDV
ALDLGYQSPSAFTAMFNRALGCSPREWRRLGEGRE
>SEQF2266_AEE68679.1 putative antioxidant protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEFLSTIKDQLPDWAKDIRLNLDAVIARSTLAPEDALGAALSAAFAARSQLLIDAFKGALSETDANAALTASALMGMNNT
WYPYVEMTGDAQLKSLPAQLRMNAYATHGGVDKKRFELFALAASIIGKCHFCVQSHYENLKKDGLTVEQLRDAGRIAAVV
NAAALALAAQGK
>SEQF2266_AEE68680.1 alkyl hydroperoxide reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTVGDKLEPFKVTGVKPGFNQHEENGVSAFEDITESSFPGKWKVIYFYPKDFTFVCPTEIVGFNKLAKDFEDRDAVLLG
GSTDNEFVKLAWRREHPDLNKLGHYQFGDTTGALIDQLGVREKGAGVALRATFIVDPDNTIQHVSVNNLNVGRNPEEVLR
LLDGLQTDELCPCNRSVGGATL
>SEQF2266_AEE68681.1 osmolarity response regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTQNTTPTRKILVVDDDPRLRDLLRRYLSEQGFNVFVAEDAKEMGKLWQREHFDLLVLDLMLPGEDGLSICRRLRGGHD
NTPIIMLTAKAEEIDRIVGLEMGADDYLSKPFNPRELLARINAILRRRGTEEHPGAPSQENESIAFGPYVLNLSTRTLTR
NGEQVPITTGEFSVLKVFARHPKIPLSRDKLMELARGREYEAFDRSLDVQISRLRKLIEPNPSKPVFIQTVWGLGYVFVP
DGGS
>SEQF2266_AEE68682.1 putative acetyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLNLLAFETSSSRCGVALLTEHGAEPVVAVLEHEGAQEHAERLLPMARELLARAGLAPEALQAVAFGQGPGGFTGLRVA
CGVAQGIALGLGIPVLPVVSHEAVAEVSGAAADDAVVVALDARMEEVYLAVYLRGDGGQWQALQAPLLIAAGEVVPWTVH
HLDAWSARAGRALRVRMAGDAWQVYAASMAAPPGWVRVQAERPQAQAVARLARRAWRDGGGVAAELAAPLYVRDKVAFTT
AERERGQGGNPRAVSALAATQMLPMAQRDLDEVAELEAQVQSFPWTRGNFADALQAGYPACVLRQDGRLAGFCVMMAAPD
VVHLLVIAVPRHLHRQGLGGLMLGWCERQARARGLAGVLLEVRPSNATAVQFYERHGYLRIGRRKDYYPAGKGKREDALV
MQKTLGEATVGNERA
>SEQF2266_AEE68683.1 DNA polymerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPEAAAPAAPRPNPLQRIWLREIGIEKTWLPAPLASAAGAVAPAAPAAEAANAAVATAEAVRPAAATPRADGPAASPT
RAPRPPVAAPQRAEPAAEADGQAARAAVAARAAGADLGQLQQLVQDCTACGLCQGRRHAVFGMGAQPARWMVVGEAPGEQ
EDRQGLPFVGRSGKLLDAMLQSVGMSRERDVFIANVIKCRPPGNRNPKPEEIAACSPYLRRQIALLNPERILVLGRFAAQ
TLLNTEATIGNLRGRVHSLQTDEGRSIPVVVSYHPAYLLRSPAEKARAWQDLLLAARG
>SEQF2266_AEE68684.1 lysophospholipid transporter LplT [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRGFYLVMAAQAFSSLADNALFIAAIALILELSGPDWMAPMMKWSFALAYVVLAAFVGAFADSFPKGRVMFITNALKVA
GCMLMFSYASIGVPATYQTYLVCAAYGLVGIGAAAYSPAKYGIVTEMLPPDLLVKGNSWIEGLTVLSIIIGTVLGGVLIS
PHVSSVLLAYPWLNKLVHTPAEAAILVIALVYVIAALCNLLIPPTHVRYPPQQRSPFKLVRAFSGYVCVLWRDKLGQISL
AVTTLFWGAGATLQLIVIEWGRSHLGYRLDQASVLMGVAAVGTVVGSILAGRIPLRKALSVLPVGAAMGLVVLLMPLVYS
PWSVYLLLVTGGLAGFFVVPMNALLQHRGHVLLSAGHSIAVQNFNEQLNILLMVAIYTVLLWLELPINIIIVIFGLIVTV
LMVVFIRWSRRNLSADPALREQIGQKGHGKALDSAH
>SEQF2266_AEE68685.1 putative chromosome partition protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRLTQLKLAGFKSFVDPTVIPVPSQLVGVVGPNGCGKSNIIDAVRWVLGEAKASELRGESMQDVIFNGSGNRKPAARASV
EMVFDNTEGRAAGQWSAYSEIAVRRVLTRDGTSSYYVNNQQVRRRDIHDIFLGTGLGARGYAIIGQGMINRLIEARPEEL
RVFLEEAAGVSRYKERRRETENRLSDTRENLTRVEDILRELGSQLDKLEAQAEVARKYRELQADGEKKQFALWLLKETGA
RDERERKNQDMARAQNDLEAAIAGLRAGEAELESRRQAHYAASDAVHAAQGQLYEANAQVSRLEAEIRHVVDSRNRLQAR
REQLQAQIAEWNTQQEHCTEQIALAEEDLATGAARTEEARAAAEDAQAGLPAIEARVRDAAAGRDDMRAALARVEQNLAL
VAQTQRDADRQLQTLEQRRERLQQELRELHTPDPERLEQLAGDRLAGEDQLEAAQAELATLEGRVPEADAERSRAQAAAQ
QDAQGLARLEARLAALVKLQEDVQKQGALEPWLAKHELAGLGRLWQKLHIEPGWETALEAALRERMAALEVRSLDWARAF
ADDAPPARLAFYQVPVAAPAPAAPQGQTPLASLLRVTDPDLRTLLNQWLAGLYTAADLTQALGGRASLPAGAAYVVKAGH
LVDAHSVRFYAPDSEQAGLLARQQEIENLQREIKAQQLIADQARAAVARAEAAWQQVSQAIAPARQRVVEVTRRVHDIQL
EHSRLQQQAEQSGERAARLRQDLEELAAHEEDLRATREEAEVRFEALDGELAEHQSRFSDAEIDGETLSAQADAARTRLR
ELERAAQEAEFAERGVQVRITDLQRNRQLAADQSQRAATELQQLETDLVDLDASASQAGLQDALELRAEREEALTRARLE
LDNLSALMRGADEERMQQERGLEPLRARITELQLQEQAARLAEEQFTEQLNAREVDRETLARELAEMPDEWRKASWLQSE
VGRISRQVDALGPVNLAALDELNTSRERKTFLDAQQQDLLTAMETLEDAIRKIDRETRELLQETFNTVNRHFGELFPKLF
GGGEARLTMTGDEILDAGVQVMAQPPGKRNSTIHLLSGGEKALTATALVFALFKLNPAPFCLLDEVDAPLDDANTERYAN
LVSNMSEQTQFLFISHNKIAMQMAKQLIGVTMQEQGVSRIVAVDIDSAVQMAAEA
>SEQF2266_AEE68686.1 hypothetical protein BPTD_3506 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDLQIGLIALGVLLILLVLGFNWWQDRRVRRRMQAHFPSTEQDPLLGAGAQDRTAAGATRREPGMGGAAAGAAPAAAPA
NPDTDDQEEPDPACEVVIEIHFSEPVRGADLLPYLQSLRQAGRKPLRVFAATAEQRHRARIHPEESYANMQLAVLLANRS
GPLTAIEWSQAWARAQDLADRFEASVEGPDQQEVLEQAARLDDTCAALDTQVGLTLLLGVAQPAAEVLAVARDLGFAADG
ARLAWLADNGAVRFTLARADGAAFDAGMGGIERLYLLLDVPCSPADQRAFGRMVDVGRDLAARLRAELVDDQGRPLQDGA
DAVIDERLQVLFEQLDQAGLPAGSARAQRVFA
>SEQF2266_AEE68687.1 DNA ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQAGPTPQQAIARLRAEIEQHNIRYYVHDDPSVPDAEYDALMRDLQALEAEHPELVTPDSPTQRVGAAPLAEFGSVRHA
VPMLSLGNAFDEEDVRAFDKRVADTLRGAGLLGLDQQVEYFCELKLDGLAISLRYEEGRLAQAATRGDGQTGEDVTANIR
TIKGVPLRLHGAPRVLEVRGEVLMNRAEFERLNRTQAARGEKVFVNPRNAAAGSLRQLDPRITAQRPLRFFAYSWGEVHG
LPEGMPTRFDEPAPGVRVASTLPRDTHGGMLDWLAELGLPVNLRHNHRERGADGLLAFYERIGKLRADLPYDIDGVVYKV
DALPSQRVLGFVARAPRFALAHKFPAEEAVTQLLGIEVQVGRTGAITPVARLAPVFVGGVTVTNATLHNEDEIRRKDVRI
GDTVIVRRAGDVIPEVVGPVLEKRPADAREFVMLTACPICGSAIERPESEAIARCTGGLFCAAQRKQTLLHAAGRKALDI
EGLGEKLIDQLVDADRVKSLADIYSLTAFELAALERMGKKSAENLVAAIDQARRPALGRLLFALGIRHVGETTARDVARH
FGSMERIMDASEEALLAVPDVGGVVAGSIRRFFAEPHNREIVEQLTQQGVHPQAEAEPEGTSLAGKTFVLTGTMPNWTRD
EATRRILAAGGKVSGSVSKKTAYLVTGEDAGSKLTKAQELGVPVLDEDGLKALLGL
>SEQF2266_AEE68688.1 putative peptidyl-prolyl cis-trans isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRIAMLAAACVIAVPAFAQNVATVNGKPITQKSLDEFVKLVVSQGATDSPQLREQIKQEMINRQVFVQAAEKDGVAKQA
DVQTEIELARQGILVRALMADYLQKHPVTDAQVKAEYEKIKKEQAGKMEYKVRHILVEDEKTANDLLAQVKSNKNKFDDL
AKKNSKDPGSAERGGDLGWAPATNYVQPFAEAVTKLKKGQLVDKPVQTQFGWHVIQVDDTRPVEFPAMDQVRPQLEEMLR
QQTLANYQKQLREQAKIQ
>SEQF2266_AEE68689.1 BolA-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSENSEQIEIISARLTALNPIILEIQDESHLHAGHEGAKGGAGHFRVHIVASCFASLTPVARHRLVYHHLQDLLPYPIHA
LALDAQAPSPDNAK
>SEQF2266_AEE68690.1 putative intracellular septation protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKFLFDLFPLILFFVAYRYADIYAATAVAITASIAQILWLRLTGKAIEGMHWINLSVIVIFGGATLWLHSDVFIKWKPT
VLYWLFGGALLGARYLFGRNLVRRLLGKQIALPDPVWERLNLSWALFFVAAGAVNLYVAFSGHFTESQWVNFKVFGLMGL
LVAFVIAQSLWLGKHLQASDTPDQDRNED
>SEQF2266_AEE68691.1 methionine sulfoxide reductase B [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEKIRKTDAEWRTQLAPEEYAVARQKGTERAFSGRYWDTSTPGIYRCIGCGTPLFASDTKFDAGCGWPSYFEPLAPERVR
EELDTSHGMVRTEVLCNICDAHLGHVFPDGPEPTGLRYCINSLSLKFEPLEDE
>SEQF2266_AEE68692.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLIEFDQAVVATPQAQVLHGVSLRLSERRVGVIGPNGAGKSTLARLVNGLALPSSGRVLVDGLDTRNQVKDVRRRVGFVF
QNPENQIVFPIVREDLAFGLKKQGLAPAERDARIAAALERLGVGHLAERTSHTLSGGERQLVAMASVLVMAPQLVVFDEP
TTQLDLRNRNRVAEAIAALPQQAIVVSHDLDLLAGYDRVLAVVDGRIAADGEPAAVLGWYREHCA
>SEQF2266_AEE68693.1 putative cobalt transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIEPLYVAGASFLHRLPAGLKLAALALAGVGLFLLSDWRALAAVLAGAALLVWRSGVGAAAWWRQTRGLALIVLAVGLFT
GLMQGWPHAAVVVLRVAALIGLAMAVTLTTPVPALIDACERALRPAERLGLLNAAQVALALALALALRFIPEIWRNYQEI
REAQAARGLGAHPLALLVPLVVRTLKRAEEVAQAIDARG
>SEQF2266_AEE68694.1 BioY family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTKDTVLAALFAALIVVLSLMPPIPLPAIPVPVTLQTLGAMLAGAMLGPLRGALACLLYLVLAAIGLPVLPGGRGGLGV
FFGPTGGFLVGMVAGACVTGWLARRLALRAAGTWRGLAGYVAACVLGGIVVVYAVGVPWLAGVTQMGMAKAWAAVAVFLP
GDLVKAAVAAWVASRVERVWPVLGR
>SEQF2266_AEE68695.1 hypothetical protein BPTD_3515 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKHFGLSAVAAAVALSLPLIASAQVKVGVTIAATGPAASLGIPERNTVALLPKEVDGTKIEWIVLDDATDTTQAVKNSR
KLASEDKVDVLVGTSITPGSLAMVDVAAEAKVPMISVAASAKIVEPVDDKRRWVFKTPQNDALMASALADAMVKAKIKTL
GFIGFADAYGDGWLAVMQAAAKAKGIEITAVEKYGRTDTSVTGQVLKLVGAKPDAILIAGAGTPSALPQKELRARNYGGV
IYQTHGVANNDVLRVCGKDCDGMLLPAGPLLVAAQLPDSNPVKQSALAYTQAYEKTHGAGSTNTFGGHMWDAGQLIVAAL
PTALKSGAKPGTPEFRAAMRDALEGIKNLPASQGVFNMSATDHAGFDERSRVMVKVEGGKWVYQPDL
>SEQF2266_AEE68696.1 branched-chain amino acid transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDSSIALILLQDGVVNGAIYALLGMALVLVFAVTRVIFIPQGEFVAFGALTLAMLVDGRVPGTAYLLPLLGGVCLLLELV
RALRTGAWGAMPKVLAGCVALLWLTDSYAAQGTSLWLNMLLTLALVIPMGPMVYRIVYQPLAEATALVLLIVSVAVHFAL
MGLALVFFGAEGWRTPAFVSGQVDLGFSTWSAQSLFVVATCALLIVALWLFFGKTLYGRALRATAVNRRGARLVGISTTM
SGSLTFTLAVSIGAMSGMLIAPITTVYYDTGFLIGLKGFVGAIIGGLVSYPVAAAGALLVGILEAFSSFWASSYKEVIVF
TLIIPVLVWRSFSSRHVDEEE
>SEQF2266_AEE68697.1 putative branched-chain amino acid transport system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRFLLIAFIVVLAGLPLLSATPEFWITQLNYIGLAAMVALGLVLLTGVGGLTSFGQAAFVGLGAYTTALLTTQYDISPW
LALPVGLLVTAVVAFLLGLITLRLSGHYLPLGTIAWGLSLYYLFGNLDWLGKHDGIAGIEPISLFGWSLASGRHIYYLIW
VFVLLALWATRNLLDSRPGRAIRALKSGAGMAESMGVNTGIYKIVIFVWAALLACLSGWLYAHMQRAVSPSPFGLNYGIE
YLFMAVVGGAGHVWGALLGSAVILGIKDQLQNILPKLIDTNANFELIFFGVLMILVLQYASNGLWPILSGWWERVTGAAG
SRRNMAPPPQAPALPHRARPQAGELVLEVDSIRKEFGGLVAVNDITFKVRAGEIMGLIGPNGAGKSTTFNLISGVLPATR
GQVRFLGDRIDGRSAREIAKRGVGRTFQHVQLLPTMLVLENVALGAHMRSDVGVLSGALHSERAREAQLLHEAAQQLQRV
GLGDYLYEQAGNLALGQQRILEIARALACDPVLLMLDEPSLGLAPRIVREIFHIIARLRETGVAILLVEQNARAALQVAD
YGYVLETGEIVLHGPARELAGNPRVIESYLGLGKGAQD
>SEQF2266_AEE68698.1 aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEALYWYDGQWLTENPKLLGPSDHAFWMASMVFDGARAFAGLTPDLDLHCQRVVRSAEKMLMKPALPWQRIQELCLEAVA
RFPAGSELYIKPMFFCADGFLLPDAEQTQFVLHVFKVPLPGEQGFSACFSSFARSWPNMAPTDAKASCLYPNGQRAIREA
NLKGFDNAIMLDGAGHVAEFATSNLWIARNGRIATPVDNGTFLNGITRQRVLALLRADGVTVDERALTRADVEEADEVFS
TGNYGKVVHVNRVEARSLSYGPLARHAYRLYMDYAAGGR
>SEQF2266_AEE68699.1 putative solute-binding periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHAPRFVRVALAALASVAALTCAPSASACEIDRPVRFSGLNWESNLVMVGIQRFILEKGYGCKTAMEIGETLPMLAALQR
GDVDVTPEVWPGQIEGAWKKALASGKVLGVGHVFTAGEGWYVPRYTVERHPDLRQAADLQRYKSTFTDPEDPAKGRIYGC
PAGWACGTLNENLLKALQLEHDYNLFAPGSGAAQKAAIMSAYKRKRDIVFYYWTPTALVGALDLVKLQLPAFDQAAYTCM
TDPRCAKPVPTEFKPNPVVTGLNADFARQAPALHRFFEALTVPDEAIGATLGWLENEKAEADDAALYFLRQYGDVWKKWV
PADVAQRVQAAL
>SEQF2266_AEE68700.1 putative branched-chain amino acid transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRQLLGYAAFAIVVGILPYVGVYPIFAMKVMCYALFACAFNLLLGYTGLLSFGHAAFLGSAAYAAGHALKVWGLPTELG
LAFGVAVAALLGLAMGALAIRRSGIYFAMITLALAQMVFFFLQAHFTGGEDGLQGVPRGTLLGTIDLRNDLNLYYVVMGI
FALGYFVIWRTVHSPFGQVLKGLRENEPRAISLGYDVDRFKLVAFVLSAAIAGLAGATKTLVFVSATLSDATWQMSGLVI
LMTLIGGLGTLTGPILGAFIVVLLENKVGDFGQMLTRLTGLDWFLRLGESVTIVIGLIFVVCVMAFRRGIVGELVALRER
RQART
>SEQF2266_AEE68701.1 putative branched-chain amino acid transport permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDLFGIPIQALLGQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGALYMLGAFVAWMGLSYLGLNYWIMLILAPLVV
GLFGILIEKLLLRHLYKLDHLYGLLLTFGLTLLIEGLFRSFYGVSGQPYPTPEALRGATNLGFMVLPNYRAWVVVASITV
CLTTWFVIERTRLGALLRAGTENPRLVEAFGVNVPRMITLTYGFGVALAGFAGVLAAPVLQISPLMGSNLIIVVFAVVVI
GGMGSIMGAIVTGLGLGVIEGLTKVFWPEASNTVVFIIMAIVLLLRPAGLFGKEK
>SEQF2266_AEE68702.1 hypothetical protein BPTD_3522 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLHKITVALAVAGLGFAGLPAQAQGISDDVIRIGFITDMSGVYSDIDGKAGVEAIRMAIEDAGGAINGKKIELVSADHQ
NKADIASARTREWIDQQKVDMIIGGTNSSTSLAIAQVAAEKKKPFLAVGAGASDLTNAQCSPYTIHYAYDTVALARGTGS
AVVKDGGKTWFFLTADYAFGHALERDTANVVKASGGEVKGQVRAPLGASDFSSFLLQAQASDAQILGLANAGGDTINSIK
AANEFGVTATMKMAGLLVFINDIHSLGLDATKGMYLTDGWYWDQSDASRAWAKKFEDKIGRKPSMLQAGDYSAAMFYLNA
VKATGSDDGDATMKWMKSNKINDFFAQGGYVREDGRMIHDMYLMKVKSKEESKGPWDYYNVVATLPGDEVYTKLSESTCP
LLKK
>SEQF2266_AEE68703.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIPALEIAGLQAWYGESHILHGVDMQVGQGEVVTLLGRNGAGRTTTLRAILGLTGARQGSVRIHGTESIELPTYKIAHL
GVGYCPEERGIFASLSCEENLLLPPPVGALGGGMSLTEIYDMFPNLHERRNSPGTRLSGGEQQMLAVARILRTGANLLLL
DEISEGLAPVIVQALARMIMALKERGYTIVMVEQNFHFAAPLADRFYVMEHGQIVEHFEAAELSRKQGTLNELLGV
>SEQF2266_AEE68704.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDDTILETKGLTKEFRGFVAVNGVDLRVKRGQIHALIGPNGAGKTTCFNLLTKFLAPTSGTIVFNGRDITRERPAQIARR
GIIRSFQISAVFPRLTVLENVRLGLQRKTGLSFQFWRSERQLAALNQPALRLLEEVDLASFAHELTINLPYGRKRALEIA
TTLAMEPELMLLDEPTQGMGHEDVARVTQLIKRVSAGRTILMVEHNMNVVSSIADTITVLARGAVLAEGPYAEVSRHPAV
MQAYMGTTNGELQGAHA
>SEQF2266_AEE68705.1 endonuclease III [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAVKRREIFARLQAANPKPTTELEYETPFQLLIAVLLSAQATDKSVNLATRKFFPRHGTPQAMLELGEEGLAEYIKTIG
LYRTKAKNAIATCRLLLERHGGEVPQSREALEALPGVGRKTANVVLNTAFGEATIAVDTHIFRVSNRTGIAPGKNVLEVE
RKLEKVVPREYLLDAHHWLILHGRYVCVARKPKCPQCGISDLCEYKLKTKA
>SEQF2266_AEE68706.1 ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSCSSLVDRIDALLPQTQCTKCGYDGCRPYAQAIADGAAAINRCPPGDESGVAALAALLDTPPLPLDRARGEPGPLLVA
VIDEAHCIGCTLCMKACPVDAIVGANKRMHTVLADWCTGCDLCVAPCPVDCIDMRPAARVWSEADAQAARQRHQQRQARV
RRETAANERLMAATAEPAPQPAATESAEDAARKRSTIEAALARARARRSAQRP
>SEQF2266_AEE68707.1 intracellular PHB depolymerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLYQLHEMQRAFLRPLAAFTDASSQLFTHPYSPLAYMPMSRQLAAGCELVHRIGKEYQKPAWNLPATEIQGKRVAVIEAV
VLDKPFCRLVHFQRDVRRTAGRADPRVLLVAPLSGHHATLLRDTVRALLPAHDVYVTDWVDARMVPQDAGPFHLDDYVRY
IQAFLRHLGPDTHVISVCQPTVPVLAAISLMASANDPCQPRSMVMMGGPIDPRESPTQVNRLATTKPYAWFESQLIHAVP
APYPGAGRRVYPGFLQHAGFMAMNPDRHLKSHYDFYLDLLRGDDGDAEAHRRFYDEYNAVLDMPAEFYLDTIRTVFQEFR
LPGGTWEIDGQLVRPADIRKTSLLTVEGELDDISGQGQTRAAIKLCSGIPAARKSHYTAVGCGHYGIFSGRRWRELICPK
IAAFIRQS
>SEQF2266_AEE68708.1 putative ferredoxin--NADP reductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDTKYTRQTITAVQTWVPGKLFSVRVTRDPAFLFQAGQFARVGLPDSDDPQAEPSVWRAYSMVSAPEEPWLEFYSIVVP
EGQFSPRMERLQPGDALYVEKKPFGFLTIDRFAPGGDLWLLASGTGLSAYLSILRDPATWRAVDRIILVHGVRSAEELAY
RDEIEQWRSQPAFAPYFEADPRKLIYLPIATRETLPGMPQARLTTLIADGRLEQLAGQPLDPQRAKIMLCGNPAMLADAR
KLLSERGFAPGRRGIPGNLAVENYW
>SEQF2266_AEE68709.1 ferredoxin [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIYAEEDVPQDQVPFIALNVELSAEFP
SISRAKKPLEDADQWNGVQDKLQYLEK
>SEQF2266_AEE68710.1 nicotinate phosphoribosyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVCRNVSRQQFRAIMIITSLLDTDLYKFSMMQVVLHHFPAAQVEYRYKCRTPGINLRPYLDEIRAEVHELCQLRFTSEEL
DYLRGLRFIKSDFVDFLGLFHLPERCIFIGEGEQPGEISITVKGPWLHTILFEIPVLAIVNEVYFRNTRRNPDWEEGRKR
LQSKMNLVLDDPALADFRVAEYGTRRRFSKVWHEEIVSTMKARMGMHFAGTSNVLLAMRHGVLPLGTMGHEYLQACQALG
PRLRDSQVFALEVWAKEYRGDLGIALSDVYGMDAFLRDFDMYFCKLFDGARHDSGDPFVWGERLLEHYRTNRADPRAKTL
VFSDSLTFPRAIELARQFAGRCKVSFGIGTNLTNDLGHEPLQIVMKMVRCNGQPVAKVSDAPEKTMCDDPAYLAYLRQVF
QLPPA
>SEQF2266_AEE68711.1 hypothetical protein BPTD_3531 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIKRFNVEKRLSDMAVYNGVAYLAGQVPDDASLDMAGQTAQVLATIDRLLAEAGTDKTKILMAQIFVANMKEFDGMNKA
WDAWVAPGNSPPRATVEARLANPDYKVEIVVTAAIG
>SEQF2266_AEE68712.1 hypothetical protein BPTD_3532 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTLLIAWHSRTGAARQMAQALERGALAAALALEQPGQLRVRRQAASRTDAAALLAADGYLFCAPENLGSLSGAMKECFD
RCYYGVLDRIQGRPYGVAISAGTDGEGAARQVERICTGWRLRAAAPPLIARSGAQTPEQIAAPKQVPADVLARCEELGGL
LAATLLMGS
>SEQF2266_AEE68713.1 hypothetical protein BPTD_3533 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRWLRGRGAKAGEVAAMQARIPPDLWRRTLHAYPFLAALSEAEQQALQARAAWLLASKNINGAHGLEITDFMRLSVAAQ
AALPVLNLSPTLYEGWDEIIIYPAGFSIQRERMDEDGVMHEYIEEAVGEAWEGGPVILSWSDAAGSDGAFNVVIHEFAHK
LDLLAGQADGMPALAAHPDIDPRQWRRVLEDSLDRFAAAVEAVERAIPAHVDPESPQADPWYARLPLDPYAATDEAEFFA
VSSEHFFVEPEPLADALPQWYALLRAYYRQDPLARLA
>SEQF2266_AEE68714.1 putative GTP pyrophosphokinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSATSAPDTPTPFDDAWRQLAAAGLDDAGQRQLAHAAAWAWPRFEAQKALTGEPLASHAAGAVRILASLHTDQATRVAAV
LASLPADLNAPAPTLRNDPVASEFGVEVARLVQGARALLRLGIVARHASDSEAESGSQKEMQRKMLLAMAADLRIVLMRL
ASRLQSLRWHAETKTPCAAGFARETLDLYTPLANRLGIWQLKWEMEDLAFRFLEPERYKQIAHLLEEKRVEREAFIAEAI
ARMQEALARAGVVAEVSGRPKHIYSIWNKMRLKGLDFSQMYDLRALRIIVDDVRACYTALGLVHEMWTPLPEEFDDYISR
PKPNGYRSLHTVVTDAQGRAFEVQIRTREMHQFAEYGMAAHWRYKEAGARGGQVAASSEYDRQLSWMRQLLAWNSDVEDE
GEAARRADQRIYVLTPQARVIELPAGATPVDFAYHLHTDLGHRCRGTRVDGQMVPLNTRLATGQTVEVIAAKSGGPSRDW
LNTQLGYLASPRARAKVRMWFNAIELQQRITQGQALVEKELQRLGKTAVNLEQLAQGLGFARADDLYVAAAKDEFSLRQI
DAVFQQPAPVAEPEPAALAHARSADSAEKSGKSGVLVVGVGSLLTQLARCCRPAPPDEIAGFVTRGRGVSIHRADCPSYK
ALAEREPERVIEVAWGKTSDSFYPVDISVRAQDRPGLLRDLSEVFARQRLNVVGVNTQSRQSLAHMVFTVEVRGGESLHK
ALDALGEVAGVTSAARR
>SEQF2266_AEE68715.1 acetylornithine deacetylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHAPGNSMDTRAWLETLVAIDTTSRNSNLALIETVRDWLGRQGVQAWLAHNPERTKANLFATLPASDGAEQGGIVLSGHT
DVVPVDGQDWSADPFALREQEGRLYGRGSCDMKGFIAASLALVPAFLEMPRKKPIHLAFSYDEEVGCAGAPVMLADLRER
GIQPEGCVVGEPTGMQVVVAHKGINLFRCRVHGKAAHSSLTPRGCNAIEYAARLICRIRDLADAYKANGPYDEFYDVPFS
TMTTNQIHGGIAVNTIPELCEFSYEFRNLPGMPADAIQAEVERYVRDELLPRMRAEYTQARIDIETGAAAPGLEASEQAA
ITQLVRSLTADRVTRKVAYGTEAGLFQGIGIPTVVCGPGHIEQAHKPDEYVALDQLAACEAFLRRLGQSL
>SEQF2266_AEE68716.1 tryptophan synthase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPYDLPDARGHFGPYGGVFVAETLMHALDELRAAYDQCRVDPSFIDEFNYELKHFVGRPSPVYHASRWSQRLGGAQIWF
KREDLNHTGAHKVNNCIGQALLARRMGKPRVIAETGAGQHGVATATVAARYGMECVVFMGSEDVRRQASNVYRMKLLGAT
VVPVDSGSCTLKDALNEAMRDWVTNIENTFYIIGTVAGPDPYPRMVRDFQTVIGQECLTQMPEVIGRQPDYVVAAVGGGS
NAMGIFHPYIPYENVRLIGVEAAGEGMETGRHAASLAAGQIGVLHGNRTYVMQNADGQVQETHSVSAGLDYPGVGPEHAW
LKDSGRAEYAGITDDEALAAFHDCCRIEGIMPALESAHAIAQAVKMTPALSKDKVILVNLSGRGDKDMHTVAERAGLQL
>SEQF2266_AEE68717.1 tryptophan synthase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTTDRIAAAFARVSEAGRAAALIPYIAAGDPSPQATVPLMHALVRAGADLVELGVPFSDPMADGPVVQRAAERAIAQGV
GLRRVLELVADFRRDDSVTPVVLMGYANPIERMGQRAFAQAAQAAGVDGVLVVDYPPEEVDEFAVMLAEAGVAPIFLLAP
TSTEARIEAIGRVARGYVYYVSLKGVTGAGSLDTDDVARKLALIRRHVHIPVGVGFGIRDAASAQRIAAHADAVVIGSKL
IETMEQAGAQAGADQKNEAAIAAAQQWLHTIRLALDDVKRENAPA
>SEQF2266_AEE68718.1 acetyl-CoA carboxylase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSWIEKLLPPRINKNSDSGARRVPEGLWVKCPSCESVLYSEDLAANLHVCPKCDHHMRIGARARIDSLLDIEGRVEIGQT
TRSVDTLKFKDSRKYPERVQEAMKQTGETDALVVMSGSIRGVSAVLACFEFEFMGGSMGSVVGERFVRGVQAALENKTPF
ICVAASGGARMQESLLSLMQMAKTNAMLTRLSAAGLPFISVLTDPTMGGVSASFAFVGDVVIAEPKALIGFAGPRVIEQT
VREKLPEGFQRAEFLLKTGAIDMVVDRRQLREEIARLLALLGNESADIVAAA
>SEQF2266_AEE68719.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF2266_AEE68720.1 B12-dependent methionine synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPYPRIPFPLSAYTHGGEFVRQLDKRILILDGAMGTMIQRYKLGEADFRGERFAEHHKDLKGDNELLSLVRPDVIAEIHR
QYLEAGADVIETNTFGATSIAQGDYDLPELAYEMNLESARLARAACDAYSTPEHPRFVAGALGPQPKTASISPDVNDPGA
RNVTFDELRAAYVEQLNGLLDGGIDIVLIETIFDTLNAKAAIFAVEEAFEARGVRLPVMISGTVTDASGRILSGQTVEAF
WNSVRHARPVTIGLNCALGAALMRPYVAELSKICDTYVCVYPNAGLPNPMAETGFDETPADTSALLEEFAQAGLVNMAGG
CCGTTPEHIRAIAGKVAALTPRAVPEVPVKTRLSGLEALNIDDETLFVNVGERTNVTGSKMFARLVREEKYDEALAVARQ
QVENGAQIIDVNMDEAMLDSVACMHRFLNLIASEPDIARVPVMIDSSKWEVIETGLKCVQGKAVVNSISMKEGEEPFRHH
ARLCRRYGAAMVVMAFDEQGQADSLERRKEICGRAYRILVEEEGFPPEDIIFDPNVFAVATGIDEHNHYAVDFIEGARWI
RANLPHARISGGISNVSFSFRGNEPMREAIHTVFLYYAIEAGLTMGIVNAGQLGVYADLAPHLRDLVEDVILDRPEPVGR
SDSADERSPTERLVQFAETVKGSGAKKEEDLTWRTGSVEQRLAHALVHGITTFIVEDTEEVRQQVAARGGRTIEVIEGPL
MDGMNVVGDLFGAGKMFLPQVVKSARVMKQAVAHLIPFIEEEKRQIAAAGGDVRAKGKIVIATVKGDVHDIGKNIVSVVL
QCNNFEVVNMGVMVPCAQILQKAKDENADMIGLSGLITPSLEEMAYVASEMQRDPYFRERAMPLMIGGATTSRVHTAVKI
APNYDGPVIYVPDASRSVGVATSLMSDQAPAYLAELAQEYEDVRRCHANRKAVPLVSLAEARAARPQIDWSGYQPPRPKF
LGRRAFKSYDLAEIARYIDWGPFFQTWSLFGPFPAILDDKVVGEQARKVYEEGQAMLKRIIDGRWLTASGVVGFYPANRV
NDEDIEVYADETRSEMLFTYRNLRQQGVKREGVSNKCLADYIAPRDSGLLDYIGMFAVTAGLGIEKKEAEFQAALDDYSS
IMLKSLADRLAEAFAECMHARVRRDLWGYAADEALSNDELIAEKYSGIRPAPGYPACPEHVVKTDLFRVLDAADVGMELT
DSYAMFPASSVSGFYFSHPESQYFNVGNIGADQLADYVARSGRAEEDVRRTLAPNLG
>SEQF2266_AEE68721.1 putative outer membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSRSLRRCAGVLACVAPLAGHAQAGAAAGQPIPELDPVVVTAARSPQLLKNVLADASVIERDTLARAGQSSLAEVLAQQ
HGIEFADSGGPQSVTSLFMRGANSNQTLVLLNGQRINNANGGGIALNALPPEAIERIEIMRGAASSLYGADAIGGVINII
TREPGDKALSAYANAGYGTYGTSRYDAGVSGAADGFSYSLSTGYGQSHGFNATNRRSFSYNPDKDSYYQNYATGTLGYEW
RPEQKVVAQVYRSRINGGYDASASYDYNDRYIQDLQAYSLASENRLTRYWKSTLRAGYVEDKNDSRAEGMFEDNNTRFRT
RQMQYLWQNDFTLAAGQTLTLAYEHLDQRADGQMSTATGIGNYTETRRHVNSYTGVYLGDFGRHHVQASLRNDNNSQFGS
HTTGGLAYGFDLTPNLRATVAANTGFRAPSFNDLYTPTSAFGYRGNPDLKPEESRNAEIGLKYQDEDSELGVVYYQTRIK
NLIQVTEDFSTVENVGRARLQGFTISGAHRFGNTRLRASLDLSNPRNEDTGKQLLRRARTVLRAGIDHRFDRLLVGAEWY
ASDERYDYGFPEEKRLGGYGLVNLTAAYDLSRNMQVQVRWNNVLGQRYTLADGYNTAGSNAFVNPSWRM
>SEQF2266_AEE68722.1 periplasmic binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAARLALRLIALTVAALAASGAAGAAPVRVVDDQRRTVELAQPARRAIALAPHAAELVYAAGAGDRLVGAVRGTDYPPA
ARQLPSVGDAMQPDPERIAVLRPDLLIGWQPAAGAPLAPIAARLGAALYYSDPRTLADIPAAIEQLGRLFGTEAQADAGA
AALRARLAALAARYAGKAPVRVFVQAGTDPLFTLNDHSIVGDVLRLCGGVNVYGQAPILAPQVTLEGVLAARPDAIVAGV
TGTADAAATLRAWQTAGVPAALRGHVYGIDADSLYRPTGRLIDAAEQLCARLDEARG
>SEQF2266_AEE68723.1 thiazole synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTEDTLTIAGRSYQSRLLVGTGKYQDFAQTRAALDASGTQIVTVAIRRTNIGQNPDEPSLLDFVPPSQFTLLPNTAGCY
SADDAVRTLRLARELLDGHDLVKLEVLGDPQNLFPNMPETLKATKTLVDEGFKVMVYCTDDPIQCRMLEDLGAVAVMPLA
SLIGSGMGILNPWNLRLIIDQSSVPVLVDAGVGTASDAAIAMELGCDGVLMNTAIAGARDPILMASAMRKAVEGGREAYL
AGRVPRKLYSAAPSSPTEGLIAAAK
>SEQF2266_AEE68724.1 putative phosphomethylpyrimidine kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNHPASSATPRGERRIPNALSIAGVDPSGGAGVLADVKAMSALSAYGCAVIAAMTAQNTQGVIGISPVPAEFVGLQIDTL
FADVPIDAVKLGMLGQEAVTLVVAEKLARWQPGHIVLDPVMVAKSGDLLLERRAVGALRETLLPLATLLTPNLPEAGVLL
DERPVETLKEMRRVAERLRNRMTHAGQRWVMVKGGHLPGNETIDLLHDGDRMIELPGHRIETPNTHGTGCTLSAALAALL
PQCPDVPEAARRAKAYLTEAIRQADRLQVGSGHGPVHHFHAWW
>SEQF2266_AEE68725.1 putative protein-L-isoaspartate O-methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNASTLPDVEQARFNMVEQQIRPWDVLDPKVLDALFAVRRELFVPPALRALAFSDLEIPLEINAVNTRQNMLAPKIEARL
AQELLLQPTDCVLEIGTGSGYQAALLAYLAQQVTTVEIDSRLATFAQQNLQVNNVADVKVETGDGRNGWGSTEYDAILVT
GSVPVVPDALKYQLRVGGRLVVIVGQAPIMTAYRITRTTAASFETVSLFETVIKPLRGTTVSQFKF
>SEQF2266_AEE68726.1 putative cytidylyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSARFESKILSRAELVAAVAAGRLPRPLVFTNGVFDILHRGHVTYLDQAAQLGATLVVAVNTDESVRRLGKGSDRPLNQ
VQDRAALLAALGCVDAVTSFHEDTPQELIGELRPDLIVKGGDYDMDTLPETALVKSWGGRAVAIPFDFERSTTALLGKIR
QG
>SEQF2266_AEE68727.1 transposase for IS1663 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MADSSLLSAGGQVHVFIGIDVSKAKLDCTLLTAEADKRKTKVVVNTAAGVQALLAWCAKHGAQPAQLHAILEPTGLYHEQ
AATALPQVRVSLVNPAQARDFAKALALRSKNDALDSYVLARYGQTLSPALWHPAPLHARQLRALLTRREALSKDLLRELN
RKEKSQFSPSAPLVDGSIDKAIAFLREQIKQIERAIDQHIDNHPDLKQDCELLNSIPAIGPQAGNAILAVMHNRHIDSAQ
SLAAYLGVVPVQRQSGSSLNSCAHLSKAGPSQVRATLYMAALVGTRHNPHIRALYQRLLKAGKSKKAALGAAMRKLVHLC
FGVLKNRIPYQPNYAMNG
>SEQF2266_AEE68728.1 hypothetical protein BPTD_3550 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHQPVLPAFLIARWLLLLVLLAGIYFLSGFLVPALAALIIGLATWPLFQRLVRAFGGRTTLAATLALVAVIVILVVPLSL
ALSYAIKEAGNFFAWALAANKHGVDVPAWIMSLPMVGERLAEYWRTYLGEPHALGALVEIVSGEHLGNIYRMVLSATGNA
FQLLLTVLFMLITLFFVYKDGTRMVGQLDILGERVLPARWQRFSRVVPATVSSTVTGMCLIALGEGVVLGLAYWVAGVPS
PVLLGVITGFMALVPGGAPLSFTLVSLYLVGSGHLVAGIGLFVWGTVELFIVDKTLRPRLVGGPVKLPFLPTFFGLVGGV
KTMGIVGLFVGPVLMALLVAIWREWVRNVERERDQSILNPEGEEPAA
>SEQF2266_AEE68729.1 hypothetical protein BPTD_3551 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAALVAQQVATLREQGFAVVRNFASPPVRQALRELALQHLAQTVDPVEYEADLKYPGAPSSRLAAGGQTVRRLLDAYGR
DQRFRDWATQAAIGAFLRAYFQDTPVLSTVHHNCIMTKHPAFGSLTGWHQDIRYWSFSDDDLVSCWLALGDERADNGGLY
FVPGSHTASFMPEQYDARKFFRDDLPQNQEWIGRAVCPELQAGDVVFFHCRTLHAARQNATDTVKLSLVHTYHPASCHPL
PGTRSAGSPGVPLP
>SEQF2266_AEE68730.1 voltage-gated potassium channel [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRLRNFLRRIGRYFPPNWWLAALVAIDGYLFVRPVLGRAVDYPMDYWLSFDSWRDAMDAVGLLQIPRVILGAGLLLMAA
GLVLKARIAWAFSLVLLGAIGVVAGWDGGHGLLLAYTGVLIAALVCFWRRFDRASLAAGSLFAVISITSLLIYAVFGTLY
LGAEFSPKVESPATAFYFSIVSMSTVGYGDITPQTTAARLFAASIIILGITVFATSISAIAGPVIGGNLKRLVRGRISHA
MRKHHIIIAGATPLAQSVYAGMRERGNNVTVVVAPGIAHNYPEDADLVTGDPSNTAVLAEAGAAHARYVLALRDDDADNA
FIVLAAKEVAGPDTKTVAVANTAMHLAKIRRVQPDMVFSLQLLGAELLARTLSGETIDNALITDLFFTKATPSGAA
>SEQF2266_AEE68731.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68732.1 30S ribosomal protein S12 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPTISQLVRKPREVSIIKSKSPALENCPQRRGVCTRVYTTTPKKPNSALRKVAKVRLTNGYEVISYIGGEGHNLQEHSVV
LVRGGRVKDLPGVRYHIVRGSLDLQGVKDRKQARSKYGAKRPKKA
>SEQF2266_AEE68733.1 30S ribosomal protein S7 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRRREVPKREILPDPKFGSVELAKFMNVVMLDGKKAVAERIIYGALEQVQVKTGKDAIEVFNLAINNIKPIVEVKSRRV
GGANYQVPVEVRPVRRLALAMRWLREAAKKRGEKSMDLRLAGELIDASEGRGAAMKKREDTHKMAEANKAFSHFRW
>SEQF2266_AEE68734.1 elongation factor G [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARKTPIERYRNIGISAHIDAGKTTTTERILFYTGVNHKLGETHDGSATMDWMEQEQERGITITSAATTAFWRGMAGNYP
EHRINIIDTPGHVDFTIEVERSMRVLDGACMVYCAVGGVQPQSETVWRQANKYGVPRLAFVNKMDRTGANFFKVYDQLKT
RLRANPVPIVIPIGVEDSFTGVVDLVKMKAIIWDEASQGTKFEYGDIPAELEGTANEWREKLVEAAAESSEELMNKYLET
GSLDEDDINVALRQRTIAGEIQPMLCGTAFKNKGVQRMLDAVIDYLPSPADIPPVDGQDDDGNPIKRSADDAEKFSALAF
KLMSDPFVGQLTFVRVYSGVLKSGDTVYNPIKGKKERIGRLLQMHANNREEIKEVLAGDIAAVVGLKDVTTGETLCDIDS
HILLERMEFPEPVISQAVEPKSKADQEKMGLALSRLAQEDPSFRVRSDEESGQTIISGMGELHLEILVDRMRREFGVEAN
VGKPQVAYRETIRKNCDEVEGKFVKQSGGRGQYGHVVLKLEPLPPGGGYEFVDAIKGGVVPREYIPAVDKGIQETLPAGI
LAGYPVVDVKATLFFGSYHDVDSNENAFKMAASMAFKEGMRRASPVLLEPMMAVEVETPEDYAGTVMGDLSSRRGMVQGM
DDIVGGGKTIKAEVPLAEMFGYATNLRSLTQGRATYTMEFKHYAEAPKNVADEVIAARGK
>SEQF2266_AEE68735.1 elongation factor Tu [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKGKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLSNKFGGEARGYDQIDAAPEEKARGITINTSHVEYETETRHYAHV
DCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLSRQVGVPYIIVFLNKADMVDDAELLELVEMEVRELLSK
YDFPGDDTPIVKGSAKLALEGDKGELGEQAILSLAQALDTYIPTPERAVDGAFLMPVEDVFSISGRGTVVTGRIERGVVK
VGEEIEIVGIKPTVKTTCTGVEMFRKLLDQGQAGDNVGILLRGTKREDVERGQVLAKPGSINPHTDFTAEVYILSKEEGG
RHTPFFNGYRPQFYFRTTDVTGTIDLPADKEMVLPGDNVSMTVKLLAPIAMEEGLRFAIREGGRTVGAGVVAKIIK
>SEQF2266_AEE68736.1 30S ribosomal protein S10 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKNQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAVVRGPVPLPTRIRRYDVLRSPHVNKTSRDQFEIRTHQRLMDIVDPT
DKTVDALMRLDLPAGVDVEIALQ
>SEQF2266_AEE68737.1 50S ribosomal protein L3 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSNSTPTPAAHRLGLVGRKVGMTRIFTEDGESIPVTVLDVSNNRVTQVKSLESDGYAAIQVTYGTRRATRVVKPQAGHYA
KAGAEAGSILKEFRLDPARAAEFAAGAVIAVESVFEAGQQVDVTGTSIGKGFAGTIKRHNFGSQRASHGNSRSHRVPGSI
GQAQDPGRIFPGKRMSGHMGDVTRTVQNLDVVRVDAERGLLMVKGAVPGHAGGDVIVRPAVKAPAKKGA
>SEQF2266_AEE68738.1 50S ribosomal protein L4 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDLKLLNDQGQAATFSAPDTIFGRDFNEALVHQIVVAFQANARSGNRAQKDRAEVKHSTKKPWRQKGTGRARAGMTSSPL
WRGGGRAFPNSPEENFSQKVNKKMYRAGIRSILSQLAREDRVAVVDTFTLESPKTKLAAAKLKSLGLDSVLIITDNVDEN
VYLATRNLPYVAVVEPRYADPLSLIHYKKVLITKPAIAQLEEMLG
>SEQF2266_AEE68739.1 50S ribosomal protein L23 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAERLMQVILAPIVTEKATFVAEKNQQVAFRVVADATKPEIKAAVELLFKVQVESVQVLNRKGKVKRFGRFVGRRRNER
KAYVALKDGQEIDFAEVK
>SEQF2266_AEE68740.1 50S ribosomal protein L2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALVKVKPTSAGRRGMVKVVSPKLHKGAPHAALLEKKTRGSGRNNNGHITVRHRGGGHKQHYRVVDFRRNKDGIPAKVER
LEYDPNRTAHIALLCYADGERRYIIAPRGLEVGATLISGIEAPIRAGNTLPIRNIPVGTTIHCIEMIPGKGAQMARSAGA
SAVLMAREGTYAQVRLRSGEVRRVHIQCRATIGEVGNEEHSLRQIGKAGAMRWRGVRPTVRGVAMNPIDHPHGGGEGRTG
EAREPVSPWGTPAKGFKTRRNKRTNNMIVQRRKRK
>SEQF2266_AEE68741.1 30S ribosomal protein S19 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRSIKKGPFVDAHLIKKVDAAVAGKDKKPIKTWSRRSTVLPEFIGLTIAVHNGRQHVPIYINENMVGHKLGEFALTRTF
KGHAADKKSKR
>SEQF2266_AEE68742.1 50S ribosomal protein L22 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
METTAIIRGVHISAQKTRLVADLIRGKSVAQALNILTFSPKKAAVILKKAVESAIANAEHNDGADIDELKVTTIFVDKAQ
SMKRFSARAKGRGNRIEKQTCHITVKVGA
>SEQF2266_AEE68743.1 30S ribosomal protein S3 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGQKIHPTGFRLAVTRNWTSRWFADDKAFGTMLAEDIRVREYLKKKLKSASVGRVIIERPAKNARITVYSARPGVVIGKR
GEDIENLKADLQRLMGVPVHVNIEEIRKPETDAQLIADSISQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGI
EIARTEWYREGRVPLHTLKANIDYGTSEAHTTYGVIGIKVWVYKGDMLANGELPPEAATPREEERRPRRAPRGDRPDGAR
TGRPGGRGRGPRKADAAPAPEGE
>SEQF2266_AEE68744.1 50S ribosomal protein L16 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLQPSRRKYRKEQKGRNTGLASRGTHVSFGEFGLKATGRGRLTARQIEAARRAINRHIKRGGRIWIRIFPDKPISQKPAE
VRMGNGKGNPEYWVAEIQPGKVLYEMEGVSEELAREAFRLAAAKLPISTTFVARHIGA
>SEQF2266_AEE68745.1 50S ribosomal protein L29 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKASELRSKDAAELGKELESLLKAQFGLRMQKATQQLANTSQLRNVRRDIARVRTLLTEKAGK
>SEQF2266_AEE68746.1 30S ribosomal protein S17 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSETQNTQVAKRQRTLVGKVVSNKMDKTVVVLVERRVKHPIFGKIIMRSAKYKAHDESNQYNEGDTVEIAEGRPISRSKA
WRVVRLVEAARVI
>SEQF2266_AEE68747.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSCQHLPASHYARCAGRELHYVEWGRRDAPPLVMWHGLARTGRDFDDLAQALADRYRIICPDTIGRGLSQWSPRPAQEYC
LDFYATLACELLDRLGLSGVRWIGTSMGGAIGMHGAATALRGRITHLVLNDIGPTLPAPAIERILAYAGAPPAFDTVGEL
EAWLRSAYRPYGWLSDAQWRRMAETSIRRLPDGRVTTHYDPAIVGQFRHHPTDYEPWSEYDSLRIPVLLLRGADSDLLLP
EVAHAMTRRGPRARRIDFPDCGHAPALNVTAQIQAIADFLAAPAALA
>SEQF2266_AEE68748.1 putative aldehyde dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYEQLALYIDGEFLTGDGRRTQDVVNPATLEVLGQLPHASEADLDRALAAAQRAFETWKRTSPMERAAILRKVGQLSRDR
AQEIGRNMTLDQGKPLAEAVGEVASCSEHADWHAEECRRIYGRVIPPRNPDVRQFVVREPIGVCAAFTPWNFPYNQAIRK
IAAALGAGCTVVLKGPEDSPSAVMAIARMFHEAGLPKGCLNIVWGEPAKISDYLIRSPIVRKVSFTGSVPVGKQLAALAG
AHMKRVTMELGGHSPVLVFDDADVDRAAEMLARFKVRNAGQVCVSPTRFYVQNGAYEQFLARFTEVLKNIKVGDGLEKGT
DMGPLAHERRVPAMSTFVDDALKHGGKVVLGGDAPDRKGYFFSPTVVTELPDNAMLMTEEPFGPLAPVVRFTDTDEVLRR
ANSLPFGLSSYVFTNSLKTATKVSNALEAGMVNINHFGSALAETPFGGIKDSGIGSEGGLETFDGYLVTKYITHI
>SEQF2266_AEE68749.1 50S ribosomal protein L14 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIQMQTTLDVADNTGARAVMCIKVLGGSKRRYAGIGDIIKVSVKDAAPRGRVKKGEIYNAVVVRTAKGVRRKDGSLIRFG
GNAAVLLNAKLEPIGTRIFGPVTRELRTERFMKIVSLAPEVL
>SEQF2266_AEE68750.1 50S ribosomal protein L24 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNIRKGDEVIVLTGRDKKRRGTVLARVDADHVLVEGVNVVKKHVKANPMANNPGGIVEKTMPIHVSNVALFNPATGKGD
RVGVQEVDGRKVRVFRSNGAVVGAKA
>SEQF2266_AEE68751.1 50S ribosomal protein L5 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRLQEFYKSKVVADLQAKFGYKCVMEVPRITKITLNMGVSEAVADKKVIEHAVSDLTKISGQKPVVTKTRKAIAGFKIR
ENYPIGCMVTLRGQRMYEFLDRLVAVALPRVRDFRGISGRAFDGRGNYNIGVKEQIIFPEIEYDKIDALRGLNISITTTA
KTDDEAKALLTAFSFPFRN
>SEQF2266_AEE68752.1 30S ribosomal protein S14 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKLSLINRDIKRAKLADKYAAKRAELKAIIDDQSKTDEERYQARLKLQQLPRNANPTRQRNRCVVTGRPRGVFRKFGLT
RHKLREMAMKGEVPGMTKASW
>SEQF2266_AEE68753.1 30S ribosomal protein S8 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMSDPIADMLTRIRNAQQVDKTTVTMPASKLKVAIATVLKDEGYIDGYSVKGTQAKPELEITLKYYAGRPVIERIERVS
RPGLRIYKGRTSIPQVMNGLGVAIVSTSRGVMTDRKARANGVGGEVLCYVA
>SEQF2266_AEE68754.1 50S ribosomal protein L6 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRIAKYPVELPKGVEASIQPDQITVKGPLGILVQSLTGDVNVAQEDGKLTFVVANDSRHANAMSGTLRALVANMVTGVS
KGFERKLNLVGVGYRAQIQGDAVKLQLGFSHDVVHQLPAGVKAECPTQTEIVIKGPNKQVVGQVAAEIRKYREPEPYKGK
GVRYADERVVIKETKKK
>SEQF2266_AEE68755.1 50S ribosomal protein L18 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKKVSRLRRAVPTRRKIAQLRVHRLSVFRSNLHIYANIISPEGDRVLVSASTLEAEVRAQLGGAGKGGNATAAALVGKR
VAEKAKAAGIELVAFDRSGFRYHGRVKALAEAAREAGLKF
>SEQF2266_AEE68756.1 30S ribosomal protein S5 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MATKVQGKHAAEKENDDGLREKMIAVNRVSKVVKGGRTMSFAALSVVGDGDGRIGMGKGKAREVPVSVQKAMEQARRGMF
KVALKNGTLHHTVVGKHGASTVLISPAAEGTGVIAGGPMRAIFEVMGVRNVVAKSLGSSNPYNLVRATLNGLRASLTPAE
VAAKRGKSVEEILG
>SEQF2266_AEE68757.1 50S ribosomal protein L30 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQKQIKVTLVRSVIGTKQSHRDTIRGLGLRRINSSRVLVDTPEVRGMIHKVGYLVSVSEA
>SEQF2266_AEE68758.1 50S ribosomal protein L15 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDIQLNTLKPAEGSKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRRLPKRGFTPLGQHLYAEV
RLSELQLMEAEEIDVQALKAAGVVGQSVRYAKVIKSGELSRKVVLRGITATAGARAAIEAAGGSLA
>SEQF2266_AEE68759.1 preprotein translocase subunit SecY [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKAQALGKTGARYGDLKRRLVFLVLALVVYRLGTHIPVPGINPDALADLFRQHEGGILGLFNMFSGGALSRFSIFALGI
MPYISASIIMQLMSVVVPSLEALKKEGEAGRRKITQYTRYGTVVLALVQAVGISVALESQPGLVIDPGMLFRFTTVVTLV
TGTMFVMWLGEQITERGLGNGISILIFAGIVAGLPSALAGLLDLVRTNSMSVLSALFIVALVVLVTAFVVFVERGQRKIT
VNYAKRQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILFPATITSWFSSGERMAWLRDLAAALEPRQPLYITLYSVAI
IFFCFFYTALVFNSRETADNLKKSGAFVPGIRPGEQTARYIDKILMRLTLAGAIYITLVCLLPEFLVMRWNVPFYFGGTS
LLIIVVVTMDFMAQVQAYMMSHQYDSLLKKANFKGSGLPMR
>SEQF2266_AEE68760.1 translation initiation factor IF-1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKDDVIQMQGEVLENLPNATFRVKLENGHVVLGHISGKMRMHYIRILPGDKVTVELTPYDLTRARIVFRSK
>SEQF2266_AEE68761.1 50S ribosomal protein L36 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKVMASVKRICRNCKVIKRHGVVRVICTDPRHKQRQG
>SEQF2266_AEE68762.1 30S ribosomal protein S13 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARIAGINIPPQQHAEIGLTAIFGIGRTRARKICEAAGVPVTKKVKDLTDAELERIREHIGVFAVEGDLRREVQLSIKRL
IDLGTYRGMRHKRGLPVRGQRTRTNARTRKGPRRAAASLKK
>SEQF2266_AEE68763.1 30S ribosomal protein S11 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKASTSGASRVRKKVKKNVSDGIAHVHASFNNTIITITDRQGNALSWATSGGAGFKGSRKSTPFAAQVAAETAGRVAME
YGIKTLEVRIKGPGPGRESSVRALNALGIKISSIADITPVPHNGCRPPKRRRI
>SEQF2266_AEE68764.1 30S ribosomal protein S4 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARYIGPKCKLSRREGTDLFLKSARRSLDSKCKLDSKPGQHGRTSGARTSDYGLQLREKQKLKRMYGVLEKQFRKYFVEA
ERRRGNTGETLIQLLESRLDNVVYRMGFGSTRAEARQLVSHRAIELNGHTADIASMLVKAGDVISIREKAKKQGRIRESL
DLAASIGLPQWVEVDASKMTGTFKSAPDRADVARDVNESMVVELYSR
>SEQF2266_AEE68765.1 DNA-directed RNA polymerase subunit alpha [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTQGFLKPRSIEVEPVGAHHAKIVMEPFERGYGHTLGNALRRILLSSMTGYAPTEVQMTGVVHEYSTIAGVREDVVDIL
LNLKGVVFKLHNRDEVTLVLRKNGAGAVVASDIELPHDVEIINPDHLICNLTDAGKIEMQVKVEKGRGYVPGNVRALSED
RTHTIGRIVLDASFSPVRRVSYAVESARVEQRTDLDKLVLDIETNGVISPEEAVRQAARILMDQISVFAALEGAGDAYEP
PVRGTPQIDPVLLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEIKEVLAARGLTLGMKLENW
PPLGLERP
>SEQF2266_AEE68766.1 50S ribosomal protein L17 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRHGNGLRKLNRTSSHRLAMFRNMAVSLITHEAIKTTLPKAKELRRVIEPLITLGKEPTLANKRLAFARLRDRDAVVKLF
AEIGPRYANRNGGYTRVLKMGFRQGDNAPMAFMELVDRPEVDASEADSDAE
>SEQF2266_AEE68767.1 putative periplasmic divalent cation tolerance protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRDDDVVLVISNAPDMLLAKRMAHVLVEDGLAACVNLGAPVLSVYRWKGEVEGADEIPLWIKTTYARHQAVVQTLAQLH
PYEVPEIIVLPVIGGIASYLDWVREQSSGVDSQ
>SEQF2266_AEE68768.1 thiol:disulfide interchange protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMQYGHASATGHGASATGRAAAAGRWLAWMLALALVLFARPAAALTEDDFLPPEQAFVFSAAMADPATLVLNYRIAPEYY
MYRERFGLSASPAQAVTLGEAAYPQGKVKYDPTFDKDMEVFYGTVAVRVPLSQGNGQPFTLTVTSQGCADAGLCYPPMDN
TVQLTPVTGGYALAAGTASAPQGGGTFDSLLEAGDTRLADFIGGGGWLKTAGVFLLLGMLLAFTPCVLPMVPILSSIVLG
GAQAQRPSRWRGLGLAAAYVFGMSVVYTALGVAAGLSGAGLAAWLQTPWILSLFAILLAVLALAMFGAFTFQMPAGLQAR
LSERSNRIPGGRVTGALVMGALSALIVGPCVAAPLAGALLYISQTGDVILGGAALFAMAWGMGIPLLLVGASAGTLLPRT
GPWMESVKRVFGMLLLGTAWWMLIPVVPTWVQMLGWSFLAVVGAVMLRAFDALPAGSGAPRMFAKGLGLLLALAGAAWLI
GALSGGRDVLAPLSHLAARAPAGGAVAAAGPAAVDKTRFVRVRSNAELDALLARSTQPVMLDFYADWCVSCREMEHFTFS
DPTVAARMSQMLLVQADVTKNNADDRALLKRFRLFGPPGIMFFEPGGKLIEDIRVVGFQDARRFAGVLEQVADRSGAPGP
AQAGS
>SEQF2266_AEE68769.1 hypothetical protein BPTD_3592 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTAIASPANVGRVYLQLLLVMAAWGVNLVAVKYLTFHMDVQVVAAVRIVVAFVAVSAILLWRLHGVPRLSLRQFGWLAC
AGLLVVYAHQILLVNALRLTPAANATLIMATSPLFSVVLAAFFYRERLTASRIGGAALGLGGVALVVAGGDGVLASVGRG
DVLALCAVIVFVIGGLIIQRVSRALDPLTILWYMYLVGAVTLSAHAAFSPATYLASSWTLEPWPWLVVLFSSVIASGVSN
LLWNAGIARLGMSRAAMFVNWLPIFGLLAAAVFLGERITALHFAGLACVLSGTWLGLRTAPAPAAGQADARPARARRA
>SEQF2266_AEE68770.1 delta-aminolevulinic acid dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKPQIISAAFPVSRPRRLRRDDFTRRLVRENTLTANDLIYPVFVTEGKGIQQAVPSLPGVVRYSLDTLLPVAEQCVKLGI
PVLSLFPAIEPALKTPDGIEAANPEGLIPRVVGELKKRFPELGVLTDVALDPYTSHGQDGVIDPAGYVLNEPTVEILIKQ
ALVQAAAGVDIVAPSDMMDGRIGAIRQALEDQQHIHTRIMAYSAKYASAFYGPFRDAVGSASNLGKSDKMAYQMDPGNID
EALREVAADLQEGADMVMVKPGMPYLDVVRRVKDAFRVPTFAYQVSGEYAMIKAAAANGWLDHDKVMMEALLGFKRAGAD
GVLTYFALEAATLLQQQR
>SEQF2266_AEE68771.1 ribosome biogenesis GTP-binding protein YsxC [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLLHRASFYISAARLDQLPPAGAPEVCFVGRSNAGKSSAINVLCNQRRLAFSSKTPGRTRLINMFGLPDPLAPGEQLGF
LVDLPGYGYASVAHREKEKWADILGGYLRDRASLAGIVLLIDIRRGVTDLDRRLTNFIAPTGRPVLALLTKADKLPYGQR
MRTVFAVRKDLADIGALHMVPFSSTERIGLEEAGAHIENWISPKVVP
>SEQF2266_AEE68772.1 putative cytochrome C precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKRVLSRMLVASGLVLGASVHSMSFAADGAAGPAKPDAAKGAQLYDQGDASRGVIACASCHGAAGSSTIPANPNLAAQPH
EYLVKQLTEFKVKEGEKLPLRMGPGGNPTPMTAMAQPLTAQDMQNVALYLSQQPLKEPATAGHENLVELGQKIWRGGLAD
RNVPACAACHGATGAGIPGQYPRLSGQFSSYIEEQLKLFRSGERGNSVPMHDIADRMSDADIKAVADYAAGLR
>SEQF2266_AEE68773.1 hypothetical protein BPTD_3596 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNATSTAPSSRHTLRSLAGDVFELLGSMRFAVSLLMFICIASIVGTVLAQNRPSNVYVDQFGPFWFEVFDKFSIWHVYNS
WWFLLIMTFLVVSTSVCLIRNTLKMLREARSFREHVRASSLRAFPHRVQTEVAQPVSETAQGVTGLLGQFGYAVRERRDG
DGIMLAAKKGSANRLGYIFAHSAMVIICIGGLLDSEAPVRLQVLFDGKQPIAINGEMARADIPDSALLSVNNPSYRANLW
VPEGSNASLATIAVNDRSLVQPLPFSLRLKKFTVDYYSTGMPSRFLSLVEVTDPETGEMFDQTIEVNEPLRYKGVTVYQS
SFDDGGSSVSLTGYPLVGAGDTPFKVDGVVGQTSEIGARIGDQPKSMKIEFTALRVINVEDFSGGQPGAQNLSLREHVAS
VAGSAAGKKNENLRNVGPRIDYKLIDDAGQAHEFQNYMLPVVLDGVPVFLSAVRNNPADDFQYLRIPADDQGSLAEFMRL
RAALADPAARQEAARRFAERNAPSGTDRQPLETAAQRALATFAEGGLQAIADFLQANTAPDDLERAAGIVVRLVGASVAE
LRDIARARAGLPALPQSGPQADEAAQWSRVAVAALSDLAFYPAPVMFSLTDFQERQGSVFQVARTPGKNAVYLGCVLLIL
GIFAMFYIRDRRVWVWVKPADGAGSSIEAAMTSQKRTLDFNQEFDRLREALLRQSKP
>SEQF2266_AEE68774.1 putative cytochrome c asssembly protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTTTSNSAAAWTSGFSPTGDGRAQRGRPDWTDIAFFLLLAAGAGFALTRFSGAMDYYEKLILCGTVPALAWLGWLWRPL
RHLMIACALAAGLALLLYQNDLARAEQVFFLKYLLSSQSAILWMSALFVLAMLCYWIGILSPTAAWLGTALTWGAVFAGT
TGLLVRWREGHLMGPDLGHIPVSNLYEVFVLFALITALFYLYYERKYATRALGGFVLLVITSATIFLLWYSFTRDAGQIQ
PLVPALKSWWMKLHVPANFIGYGTFSLAAMVGFAYLVKQYGQTTSWLKLAPLFVLGVALCVEPIVFRTEGLSATWMIYCG
AGVVIVGGILLARARIAQALPSLEVLDDIMYRAIAIGFAFFTVATVLGALWAADAWGAYWQWDPKETWALIVWLNYAAWL
HMRLIKGLRGTMAAYWSLVGLLITGFAFLGVNMFLSGLHSYGKL
>SEQF2266_AEE68775.1 diaminopimelate decarboxylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTAVSVQPDLAGSPHFRYQNGVLHAEDVPLDSLAAQLGTPLYVYSRAALRSAWETYRDAIGERPVLVCFGMKTNSNLAVL
KEFARLGAGFDIVSGGELARVLAVGGDPAKVVFSGVGKQAWEMRAALEADVKCFNVESEAELERLSDVAVSMGRRARVSL
RVNPDVDAQTHPYISTGLKENKFGIAIESAPAAYRLAARLPGVEVVGVDCHIGSQLTDISPYFDALEKLLDLIEQLAENG
IAIKHLDLGGGLGIRYTDEIPPSPKALLDRVFERINARGLGHLHIVLEPGRSLAGNAGVLLTTVQYLKHAEARNFAIVDA
AMNDLLRPALYEAYHGVQPVTPRADKRIEYDVVGPVCESADWLARGRALAIQAGDVLAVESAGAYSMVMASNYNTRVRAA
EVMVDGNRHYIVRQRETLESLYQGESTLP
>SEQF2266_AEE68776.1 hypothetical protein BPTD_3599 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTETEFLALVDQVLDSIESQADDWAAGLDVDIEATRSGNVLTLVFEDGTQVVVNVQAAMQELWVAARSGGFHYRYDGQHW
NDTRGGPRLPDALSQICSEAAGVPVSVRL
>SEQF2266_AEE68777.1 penicillin-binding protein 1A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSKRQNSTKQDKPAKSGSAILRFFLKAGIFFGGLALCGVLLAGMALALAWPNLPDLHAMTDYRPRVPLRVYTADRVLIGE
FGEERRNVLRFNEIPDVMKSAVLAAEDDRFYQHGGIDWMGVIRAGLTNLISMSKSQGASTITMQVARNFYLSSEKTYSRK
FYELLLTFKIESQLTKDQILELYMNQIYLGHRAYGFAAASRTYFGKPLSQVTPSEAAMLAGIPKAPSRFNPISNRPRAEL
RQRYVLGRMYSLGYLTEPEYKEAMAQPIVIKSAEGTPAGGYAIHGEYVAELARQLLYNVYQDNLYSRGINIYTTVQSKDQ
ESAYRAVRDGVLEYTRRAPYPGPEEQLDMPAGVENDPQALDEFLDGVFDKFSDSGDLLTAVVLSASPTEIKLVRSSREVI
SITDKKALGVVARALTDKAKPEMRLKRGSVVYIHKYNDNWEVINMPAVQAAFVALSPQDGAIRAMVGGFDFYRGNFNRVT
QAWRQPGSNIKPFIYAASLERGLTPATQISDQPFELSAAQTGSKAWHPKNYGNQYEPMLTMRQGLYKSKNMVSIRILQAI
GPQYAQDYLTRFGFDKARQPAVLPLALGAGSVTPLQLAGAYAVFANGGYRITPYLIDRVTDSSGKVLMQSRPVIAGDAAA
RAIDARTAFVMDDMLRGVATSGTAARARATLKRSDVAGKTGTTNESVDAWFSGYTPSLVATAWLGFDQPKSLGSRETGGG
VAMPIWLDYMKDALKGVPEEKQRPRPDGLLVENGELYFSEFPPGQAVARLGLPQAGDALGDFLNGLTGGNDNSIRVAPGV
GTQGSQPWSQNIPF
>SEQF2266_AEE68778.1 shikimate kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNASANLCAASANDPQPGDQEAAHPVACAGDEPAAFLPHDLPIFLVGMMGAGKTTIGRGLARALRREFIDLDHELEARCG
VRVPVIFEIEGEAGFRRREAAALQECTQRRQIILATGGGAVLAAENRQALRERGIVIYLRASVEELFRRTSRDRNRPLLA
TADPRATLRELMVAREPLYNEVADLVIDTGSMPIATLVKSLLPKLQAYEKK
>SEQF2266_AEE68779.1 3-dehydroquinate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDVVEVATPGGSYPIHIGPGRLDALDASIPADATAIAVVTNPTVAGLYGARVEAALARTGKRVLRIELPDGEAHKDWQTL
NLIFDALLENRLDRRAVLVALGGGVIGDMTGFAAAVYMRGIRFVQVPTTLLAQVDSSVGGKTAVNHPLGKNMIGAFYQPV
AVEIDTEVLGTLPAREVSAGLAEVIKYGLILDAGFWQWCEDNVGALRALEPRALAYAIRRSCELKAQVVGQDERESGLRA
ILNLGHTFGHAIESGLGYGEWLHGEAVGCGMVQAAELSTLAAGFPAADVQRVRDLVREIGCPTVAPDLGAERWLALMQVD
KKTEGGEIRFVLMPRIGQALSRAAPEADVRTALERTTR
>SEQF2266_AEE68780.1 deoxyguanosinetriphosphate triphosphohydrolase-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKDGTVVLMNELASYASDPSKTRGRRHSEPPPENRTEFQRDRDRIIHSNAFRRLEYKTQVFVNHEGDLFRTRLTHSLEV
AQIARTLARSLRVSEDLTEAIALAHDLGHTPFGHAGQDELNACMRELAPQAGGFEHNLQSLRVVDELEERYAEFNGLNLC
FETREGILKHCSATHARQLGAVGERFLDRTQPSLEAQLANLADEVAYNNHDVDDGLRSGLITLEQLQEVGIFARHYAEVA
RRYPQLAPRRATSETIRRMINTLIVDLTATSLARIRDHAPASADDVRRAPPLAGFSAAVRREADELKKFLFDNLYRHYRV
VRMTTKAQRIVRELFQAFLGDPRLLPPDYRREQPQDQARAISDYIAGMTDRYAIREHRRLFEMG
>SEQF2266_AEE68781.1 putative glutathione S-transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYTLLIANKNYSSWSLRAWLALRQAGIPFEEQKLGLLTEAFTQRLQAITPAGLVPVLLDGDFAVWDSLAICEYVAERHPD
AQLWPADRRARARARSLAAQMHSGFGALRQTMPMNIEARLPGIDLSAAQADISRVQAIWHDTRAEFGQSGPFLFGRFSIA
DAFYAPVVSRFQTYGVAAAGAVRDYMEAVQALPAMQAWTRDALAEATFVADDEPYRTHR
>SEQF2266_AEE68782.1 excinuclease ABC subunit A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDAIRIRGARTHNLKNVSLDLPRHQLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLQLMDKPDVDLIEGLS
PAISIEQKSAGHNPRSTVGTITEIHDYLRLLYARVGTPYCPDHGLPLQAQSVGQMVDAVLAWPAEARLAVLAPIARARKG
SFEDELASLQAQGFVRLRVDGQLQEIEQLPALKKTEKHDLDVVIDRLRIRPESQQRLAESFETALQLAEGRAIALDMDSG
REQVFSSRYACPICSHSLAELEPRLFSFNNPMGACPGCDGIGQVGFFDPKRVVAFPELSLAAGAIRGWDRRNSFTHSLLT
SLATHYEFDIDTPFEELPAEVREKVLHGSGEEEIAFFYVNEKGRSTVKRHPFEGVIPNLERRWRETDSATVREELGKYRN
IKTCPDCGGSRLRPEARNVLIGSEPREGERHGQAIFEVESMPLSVCLDWFRQLQLTGAKQEIAQRIVREIEARLSFLNNV
GLNYLSLDRSADTISGGEAQRIRLASQIGSGLTGVMYVLDEPSIGLHQRDNDRLIGTLQHLRDLGNSVIVVEHDEDMIRC
ADWVVDMGPGAGEHGGQVVAQGTPEAVQTDPQSLTGQYLSGARAIEIPARRPVADDQPWLHLSGATGNNLKSVDLRIPAA
RLVCVTGVSGSGKSTLVNDTLAVALARQLNHAQGEPAPYAGLAGLEHFDKTISVDQSPIGRTPRSNPATYTGLFTPIREL
FAGVPEARARGYDPGRFSFNVKGGRCEACQGDGVVKVEMHFLPDMYVPCDVCHGKRYNRETLEIRYRGRNISEVLDLTVE
QALEYFESVPAIARKLHTLIDVGLSYIRLGQSATTLSGGEAQRVKLSLELSRRSTGRTLYILDEPTTGLHFHDIELLLKV
LNQLVDSGNTVLIIEHNLDVIKTADWLVDMGPEGGDGGGRVVAQGTPEQVAASPDSHTGHYLGRVLRNGKRR
>SEQF2266_AEE68783.1 putative transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPADQKLQLTRSERRASVALAGLFACRMLGLFLLLPVFAVAARDLPGGNDPARVGLALGMYGLTQAFMQIPFGLASDRWG
RRPVVVAGLVLFIIGSVVCALADDVYWITLGRAIQGAGAISAAVTAWLADATRDEVRTRAMAMVGGSIGLSFAVSLVAAP
VLVGWWGLSGLFWTIACLGLASLTVARWMVPVVPRTEARTMQGASARAVLLHADLLRLNFGVFVLHLIQVALFLVTPSLL
ARLGGLDARDLWRVYLPVILVSFVLMVSAVFVAEKRRAHRAALRAAVAGLIVVCALLPLAAHGFYALALALTGFFVAFNI
LEALQPSLVSRVAPAQYKGLALGFYNTAQAAGLFAGGALGGWLAASGGADAVYIAAAALAALWLAVTWALRPLR
>SEQF2266_AEE68784.1 single-strand binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASVNKVILVGNLGRDPEVRYSPDGAAICNVSIATTSQWKDKASGERREETEWHRVVMYNRLAEIAGEYLKKGRSVYIEG
RLKTRKWQDKDTGADRYSTEIVADQMQMLGGRDSGGDSGGGYGGGYDDAPRQQRAPAQRPAAAPQRPAPQAAPAANLADM
DDDIPF
>SEQF2266_AEE68785.1 ferric siderophore receptor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPRPTSRRTRPARRQAQPAFVPALFMLALGAVAAGARAQPAAAGVPDTQGVAQMPAVTVNAAPVDDTLEHLEAPVDTGAL
GRRTQLETPFSTTVVTARDMEERQVNKLGDVFALDASVTDNSASYGAWASYLTVRGLPLDWQNSYRIDGRPFLSYVTTLP
FEHFEQIDLLKGASGFMYGFGSPGGLVNYVTKKPTDEAVRSVELGYVSKGLLREHVDLGGRVGQSGAFGYRLNATHEEGN
TYNGGSLYRDSVSLALDARLSDRLTWDFQSIYQDRKAIGQEPTIYAGTMAGSELPSPVRNDNDRLVGQGPYADNAFRYYS
TGLKYQLADEWTLSTNYSYSSTRTRRNESVLFLRDQAGDYDDYRSDYGEAYGYNQWQAMLEGKFATGPLKHHVVAGASWQ
KQKNDYSANGVYQLQGTGNLRARNTNTYYSEGQLHLYRAAEITQKALFASDTVDLTGGWSVLGGLRYTNYAQQGFDATGA
RTSRYDKNGVLTPTFALMYKLTPRTMAYASYIESLEPGSSVGAAYANFGALLDPLKSKQYELGIKTEQDGWAATAALFRI
EKKAEYANAANELVQDGKTLYQGLELGASTRIARDWNVGGSLMLLDSEYKKGSDFTGNRVAGAPKFVAAAQLAYSVPQVP
GLKLRADVKYTGNTMLGASNRVQVDDYAIVNIGATYDTQIHGYEATFTAGINNVANKRYWLYQSSDYVKAGDPRTYGLTS
ISRYPDIWI
>SEQF2266_AEE68786.1 hypothetical protein BPTD_3609 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEENTMGHGIAGGTGLAARNEAPELIRALDRDDERCWVPLAPGAWFYPMAFDVRNGVWHSVFRVAPGAQLPTHYHLGRVV
GCTLRGRWHYRERDWEHRPGSYLLEVPGDSHTFEVIGEETVELFTVNEGGFLLLDERGDVTGITDVLLRLEQARAHYERV
GLGRAAIDSLIR
>SEQF2266_AEE68787.1 hypothetical protein BPTD_3611 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTLASMVRWPRIAGAVVRQACAAALGLALGAAPALADYPSRPVTLVVPSPPGGSTDAIARVLADALGKRLGQSIVIENK
GGGGGIVGSSYVLDKPADGHTLLLAISSKTVARALQPALAYDPIRDFTAVALVSRVPTVMVTSVAAGLPDFARLKAYIAA
NPGKTAWAVPGIGTAPHLTEHVLMQALGGKVNEIQYRGSAPMHVDLLAGRVDVVVDSYTALRQHIDDRKVVPVAVIGRGR
IEAMSAVPTLGELGYRTFEEVLFDGWNAIDVRASTPPEVVARLSQALQDVLADRAFRERVVQLGLVPFAPMPASQAQDFV
QDVSRVLSPVAASLAAAQ
>SEQF2266_AEE68788.1 GntR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASVDVLSLPEVEAAASADTPNLLYWTIYQGLVRSIEADTAAVGKDLPIERLISAHYSASRFTVRQALDLLEKRGYIRK
QRAKPARVISRSPVVPVERHLRRLSDILSPAVIHQTRVTGFGPARHDEAAATLGQAPGAQLYRLQLVHADQAQNIGFSDI
YFPAHIGQRLSLQDFDAAARNGPLFVYPIVEQKIGFKVDHARINIGAESHARAQRTAVAEALGTAPLVRVQYVFSHAGEP
VQFTTNWLDSRFFSVSYELAEGEF
>SEQF2266_AEE68789.1 transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIAKHLDLNLLMIFDAILAEGHVTRAAERLAMSQSAVSKGLAQLRQAFGDPLFLRASRGVVPTHRALEIADQVRQAIAAL
NSLAGPVTEFDARSAHAHFNIGATDYVSFVLLPGLMRRLQETAPHVSLTLHDMESMMPEEMLLAGKVDLVISSVASVNFP
IYRQELFRDHYVCLCRAGHPALADPVPIEQFVSSRHLAMPRQNGARERVLQDTLQRLGVTRDVAVQVPHMLAIPATLTAT
DLVATMACRVAREFAARHPLQVLAHPLPLPDFPVSQL
>SEQF2266_AEE68790.1 N-ethylammeline chlorohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLTQIKGEWVLGFADGNHRMLCDASVVYEGERIVHVGTEFDGVADRVIDARGCLVAPGFIDTHVHSGHRALHKLLADGGR
PDLFGQPYMDVTIARDGTRIKGYPNYLSREEAAVDPGIALHAAFTVAELLRNGVTTFVELGGHVMVQEALWRECERLGVR
GYLGPGYDSGRWAADDQGRLRRVPYPDGGDHLFEEAVAFIKRVQAAGNDLVNGILVPREVENCSVDILRRTVQAAQELGV
PMATHAGYNVIEFYETVREHRMTPIELLHSVGMLGPRLNIGHANLISDSPRLNYSGGRDLALMGEHRVSISHCPINIVRR
ARVLDSWKKYREAGVNLTIGSDTYPRDMVMNMRTASYHGKVMSHDLNAASAAEVFEAATLGGARSLGRTDIGRLEPGARA
DVIAINVGRQDVLRYGPIWDPIRSLVECGVGDDVELVVTNGQVRMEQGRIAGVDLGALRAEAQQFADNVWRDLQDWDPLR
RTAQAMCPPSFCPDCM
>SEQF2266_AEE68791.1 hypothetical protein BPTD_3615 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKLMQWGAALALAVTCGAAQAGDAVAAYPQRPVRLIVPYGAGGAADVLARIMAEKLSAIWKQPVIVENKPGGVGTIGIM
ATVQAEPDGYTLVSVPVSDLAVNPHLYRKRPFDVRKDLAPVSQVGAVPNVLLVSNALEVGDVQALVARAAAKPGYLTYSS
PGVGSQAHIAAEMFAMRAGLSLQHIPYNSVPAALTDVAGGQIDMMFAQLPAVLPFVKSGRVKVLAVAADARTPLLPDLPT
LGEVGGPSIGDAISWSAVMAPAGTPLALREKIAAGIASAIQSPQVREKLAAQGLIGLGGTPQQLEQAWRQDYERYGAAVK
AMHIQLLD
>SEQF2266_AEE68792.1 putative glycosyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQPHPLRIAHAEAAIGFGGQEQRILKEALAMRERGHHVELICRPQARLIERALDAGIRVHTVPMGGLRNFVRGVPRVRR
ILREGGFDVLNTHSRIDTLLAGAGARLAGTPLVVRTRHLSNRVNSMLSYTWIPHRVSTVSDHVRRYLIERGVSPAHIETI
YSPINLPPPGLRSTLRDELGLPADAVVVACVAIMRATKGHRELIEALRPLMASRPQVHLVLVGNGSPLFEQLQALIAELG
LGERIHMLGFRDDVPNVLAGSDIFALPTRKEASGTVFVEAAACGLPVVGVDVGGVSEMLRNGETGLLVPPDDAAALQGAL
RSLIDDASLRARMGGAGERMVRDEGKFSLARLAERTELVYRKWLAERRDAPTAASRSARQS
>SEQF2266_AEE68793.1 hypothetical protein BPTD_3617 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSIPTSRLAAVQAPPQDIAPQTLRDRMPAVLPVMDVVPAAMDWPPFAVVDLLGATLLATGSERDVYQHPGNAALLIKIVN
RARINEPGRRRPWHKKFHREDAHRVFITELIEYISTTVQLRQADGNTLLARIAGLALTSAGLGLVVEKIVDAEGKAAPTL
AQVVSTQGFGPQLREQLRAFFLALIEAHVIFNDVSARNIVVGRNATGQDGLFLVDGFGPKQLLPLYAWSKTLNRRRLLRK
YEDMVRKLARLGDRLARQAGQPLPGDGARPPR
>SEQF2266_AEE68794.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGALKNDSSLDVRMLRIFAAVAAADSLSAAAQALNITQSAVSQTVTQIESILGMRVLDRTRRPYRLTPAGVALQRQSRQI
VDDIDRLIAQVREADLMNRPAIRIGMIDSFAATTGPAIVKRLTQSASQVLVWSGLAYGHAQALLNRQVDIIVTTDALEDV
DGLVRRPILNEPFVVVAPAVRADEFAPLDLRQMAQAAPFIRFSGRSHFGAMIERHLRRCGVTAPPFLEIDTSDVVMAMIA
ANLGWALMTPLCLLQGRSWLDQVVVLPLPGPSLARTLHQVSRLEEYQEMADMFWQLSRQALETEIFPQVTTQLPWLGRQM
RLC
>SEQF2266_AEE68795.1 periplasmic solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAIGAAALALPVAGRSWAAQAEAVRYGGSAWLGHYPAWLAIQAGYFKAENLEVGWESFGTTSARVSALLSGNIDMAVTAA
PAALAVMSRGSRHFAIIGVPENFGRVEGLIVRSQVARLEDLKGKKVGVTFASSAHLLVLNLLDQAGLKAGKDVTVLNVPA
PELPAAFQSGQIDAAAAWTPQFNAIRAMPDAKVLVDDTSFSLYKEYGVTPGPDVLVARRAFLDKNPEAVKRFLKAYFRAN
EQLKTQPDATVAALTELTKLSAADQLEMVKGADWYTAAEQGALLAPGSKYIDGLQKLAEMMVRYDQIDKAPPVREWVDAA
YL
>SEQF2266_AEE68796.1 ABC transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAQNRQRRPDLLLISSVSVIVLLLFWEAVCRLQWVDALFLPPPSDVFARIGNMWEQGSLLDHIVASARRVMVGFAAATA
LAIPLGIFLGTSQRARAAFDPILSFLRPLPSMSWIPLSLLWFGITETQKYSIVFMGTFAPALLYVIEATRNIDPLLIRAA
SNLGASGPQVMRSVILPASLPQIFSGFKVILGLSWTCVISAELVAAKEGLGFLIMNGKEFFQTDTVVLGMALISVTVLVT
DVVFRIIENRVLAWSR
>SEQF2266_AEE68797.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISIEGISKSFGPFQALQGVDLKIPRGEFLVVLGASGCGKSTLLNLITGFERPTAGRIVVNGREVVDVDPHCGMVFQQYA
LFPWLTVAENVAFGLKMKGVAAASRRETAQQFIEMVGLKGFENAYPKALSGGMRQRVSIARVLANDPDVILLDEPFAALD
AMTRQVLQEELTRIYEQSGKTIVFITHSIDEALLLSSRMVIMSARPGRVACDMPNDLPYPRNADVQLSPRYIELKSQIWD
IVQNEVMRSLQARADQ
>SEQF2266_AEE68798.1 hypothetical protein BPTD_3622 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSPSGSSRTFPQYQSGSGWNAMLPKRTPRTAAPARRHFKSLVIGAGYTGLAAARRLAELQPQDQVLVVDATVAGEGSAG
RNSGFLINLPHNTRMSGHHSPLEVARKQIAMLQSGLDWLAQLSGQGGFDCGWDLAGKYHAAATADGEQSLRGALQQYGQW
GVAYSELDRDALQAQLGTRYYRFGYHSMNNVFVQPAALIRGLADSLPENVWLTEDNPVLSIDGSGPYKVRTRGGEFTADN
VILANNAFARRLGFLRSRLVTIFTYAGVTPVLSPAQQALLGERDQWGVIPANRLGTTLRRISGGRFMVRSAYSYEAEQPL
ERMEQLLRDSFVRRYPDLAAHDFEYVWSGSTGLTGNGASFVGAIQPGLYASVGCNGAGVIKGTIYGKLLGEQVAGHRSAM
LDDLASFEKPNWLPPEPLRRIGALSTIAYQARKAGLEK
>SEQF2266_AEE68799.1 hypothetical protein BPTD_3623 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRKEEIMKMIAIGAGVMLLAGLVRACQGWRRLLRQLPDRNEDMTLF
>SEQF2266_AEE68800.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGCHFSHDRAKLPGMSIPKSELTFAAIVDAALDMAAAQGMESLTLGEVAKRLGISKSGVFSRVGSREALLHAVLQEYDR
RFLGAVFAPAMAAPRGLPRLDAMVGHWIERAANVEALTGCIYVAGAFEYDDVDNPMRGRVEANVRGWRAALGRTVRQAID
EGHLRPDTDPEQLVFEIYSLMVGLMHDARFLRDPRAHERVRQAYARLIATYRNT
>SEQF2266_AEE68801.1 malate synthase G [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTERIPHHGLQVAASLHRFIEDEALSGSGLAPDEFWAGFAALVRDLAPRNRELLAERDRLQGEIDAWHRAHPGPVRDSAG
YQALLERIGYLQPQPAQVTASTRDVDSEIASQAGPQLVVPVSNARYALNAANARWGSLYDALYGTDAIPPVAGDDGKGYN
PARGEAVIARARAFLDEAAPLAQGSHADATAYAIEGGKLVVTLGAGQRTGLRNPAQLAGYQGDASQPAAVLLANNGLHFE
IQIDRQHQIGATDAAGVKDVLLEAALTTIMDCEDSVAAVDADDKVLIYRNWLGLMKGDLSESVTKGGKTFTRRLNADRQY
HKPDGGTLTLHGRSLMFVRNVGHLMTNPAILDEQGSEVPEGILDAVITSLAALPDRANRLNSRTGSIYIVKPKMHGPAEA
AFANELFDRVEDLLKLPRHTIKMGIMDEERRTSVNLKACIAAAAARVAFINTGFLDRTGDEMHTGMEAGPMLRKGDMKSS
AWITAYERNNVLVGLDCGLRGRAQIGKGMWAMPDMMAAMLEQKIGHPKAGANTAWVPSPTAATLHAMHYHQVDVAAVQQA
LEQTRYDSVRDELLAGLLTVPVGDPAAWSADDIQRELDNNAQGILGYVVRWIDQGVGCSKVPDINNVGLMEDRATLRISS
QHIANWLRHGIVDRAQVNATFERMAKVVDQQNAGDPNYLPMAGHFDTSFAYRAACALVFEGLTQPNGYTEPLLHEYRQAF
KAARR
>SEQF2266_AEE68802.1 putative dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVRPPYPIAILGAGKIGAAIALLLQRGGDYDILVADQDPARLQAVARLGCRTAQVRDDDALQQAVSGRYAVLNALPFHRA
RAAAAACVRAGAHYFDLTEDVASTHAIRELAASAGTVLMPQCGLAPGFIGVVGSDLSRRFDRLLDLRMRVGALPRFPSNA
LRYNLTWSTEGLINEYCNACEAIVDGALVAVPPMEGYETFTLDGIEYEAFNTSGGLGTLPQTLLGKARNVDYKSIRYPGH
CAIMKLLLNDLRLRERRDLLQEILESAIPSTDQDVIVILASASGYRQQRLVQESFSARIYGATVDGQTLSAIQLSTAAGI
CTMLDLAVHGHLPQRGFIGQEQVPLAALLDNRYGRIYAGQPLPAREAPQALLPGS
>SEQF2266_AEE68803.1 hypothetical protein BPTD_3628 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTLATAVILSMTMAAGAQAADLGAEPTRAQVQADLAQAKNDGVVTFGNLDYPPQHG
>SEQF2266_AEE68804.1 4-hydroxybenzoate octaprenyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASQQQSVDLNDIVFTDWVERWLPRPWRPYARLCRLDRPIGTWLTLLPCIAALVQAAGGLPDLRRLLIFSLGALLMRGI
GCTVNDMWDRDIDKHVERTRFRPLTSGQLSMRQAVAFLIGQLLVCASLLFFINDMSRWLAVAVLPFVFIYPFCKRVTYWP
QVVLGICFNWGMLMAWSDTQDHLPLAAIAMWLGAVLWQVGYDSIYAYVDVRDDRSLGLHSTAMRFGEQGMLWIGGFYAAT
LALWTWGGYAMGLGWGYFAGIGAVAIHLAWQLREFDLQRPERNFKLFRANLWTGVLLIAAALAGTLPY
>SEQF2266_AEE68805.1 putative aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKPFEPECSFSERAKQLTSSAIREILKVTERPEVISFAGGLPAPGGFPVEVVQAAFDKVLVTNDRTALQYGPTEGYAPL
RQWVADDLNAAGANVTADQILIVSGSQQALDLLGKVLIDKDSPILVEDPSYLGALQSFSLYQPKYVPIPTDDGGLVPEAI
TAELAEGARFLYALPNFQNPTGRTLNLERRKALVRQAAQFGVPIIEDDPYGELRYAGEPQPGLLALAGECGATVIRLGTF
SKVLAPGLRLGYIAAPRNIINKLVQAKQATDLHTPTLTQMAVYEVVKTGFLAEHLPRVREIYRVQGRCMLEAIEREFPAS
VSWTKPEGGMFIWVTLPEHIDSTKLLAQAVEQNVAFVPGGPFYAGTPRQNTLRLSFATVPEAKIREGIAILGKLLKAAI
>SEQF2266_AEE68806.1 hypothetical protein BPTD_3631 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFDATPISTVSKPVFYAELAAQARALLAGEHDRIANAANFSALVYQALPDINWAGFYFHDGQELVLGPFQGKPACVRIAL
SRGVCGAAASQRRTQVVPDVHAFPGHIACDAASRAEIVVPLVHKGSLLGVWDVDSPLPGRFDDEDRAGMEALCEVFLHSL
GSAD
>SEQF2266_AEE68807.1 putative dihydrodipicolinate synthase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPMQYPAQSPFQGIWIPLVTPFADGAVDLPALRRLVRDYKAAGVDGLVACGSTGEAAALDEAEQLAVLDAVLEEAGALPV
AMGLAGNHQDHVLRRLARLGERPLAGVLAPAPLILYDIPYRTGAQLDTATLLALAEHPNIAAVKDCGGSVDKTLALIAHG
GMAVLAGEDLQGLGTLCLGGTGMIAAAAHVRPDLFVAMHRAVRAQQLGQAQRLFLALAPVIRLLFAEPNPAPLKALLASQ
GRLRNEMRAPMLPAAEALTRRLQAELDVLDRAFAPGA
>SEQF2266_AEE68808.1 LysM domain/BON superfamily protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLQDVTSCCITHAAAAPIIVFAINAFFNAQGRKMGLLNFIKEVGEKLFGASEAKAATADELKKELDKHGLSAEGLDISV
DGDKVTVKGSAASTEAAEKIVLALGNTVGVAQVDNQLQTAQAAPAAVMYTVQKGDTLWKIAEANYGKGKGAKYPTIFEAN
KPMLSDPDKIYPGQVLRIPPLAE
>SEQF2266_AEE68809.1 hypothetical protein BPTD_3635 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHITLNGEAREFPLQTTVVELLETLGYQGKRVAVERNGEIVPKSKHGDTLLDDGDQIEIVVAVGGG
>SEQF2266_AEE68810.1 prolyl iminopeptidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLYPPIEPYRQGTLDTGDGHQVYWELCGNPQGKPAVFLHGGPGSGCSPVHRQLFDPRRYNVLLFDQRGCGRSLPHASLEN
NTTWHLVADIEHLRAEVMGAERWLVFGGSWGSTLALAYAQAHPQHVSELVVRGIFGLRRAEVQWFYQEGASWLFPDRWEE
YVAPIPPEERGDLIAAYHRRLTGDDPAEQLRAAKAWSRWEDHTITLLPSPRYQQSHAVDRAALAFARIENHYFVHAGFME
EGQLIRDAHKLHGIPGTIVQGRYDVCTPARIAWDLHRAWPQAQFHLIPDAGHAFDEPGILARLIQATDTYAANPA
>SEQF2266_AEE68811.1 tRNA (guanine-N(7)-)-methyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTNTPAHPPEGAPLSEATQAALASAEHAPDSPGATHIRSFVHRRGHITQRQRDALEQLMGKWSVPYAPRPLDMAAAFGR
QAPTILEIGFGMGETTEKIALARPGDNFLGVEVFNAGVGSLLHRIEESAISNLRIVQHDAVEVVRDMIAPDSLAGVHVYF
PDPWPKKRHHKRRLLQPPFVALLASRLAPGGYLHCATDWEDYAVQMLEVLGGEPLLRNTADGYAPRPDFRPQTKFETRGL
RLGHGVWDLMFKRA
>SEQF2266_AEE68812.1 LysR family regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPARFDLVTLALFVAVARQGSISAGARQSHLAVGAASKRISDLESALGTPLLYRTAAGVELTDAGQACLAHAVRVLQEV
EHMAGVLSDFAQGVRGQVRIAANTSSITQFLPEDLAGFMQRHPAVRIHLEEQNSSDIVTAVAENRADVGIFADRTPAAGL
TTVPYRLDELVLITPPRHPLAARAQVAFADTLDCDYVGLPPATSLATRLADESARLDKRIRLRIQVRSFDAICRMVVATG
GVGILPRIAAEPHARSMQVRLIPLADDWAQRWLLLGVRDLDSLPVAARLLVRSLAEGAA
>SEQF2266_AEE68813.1 putative hydroxymethylglutaryl-CoA lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKGPPRIEINEVGPRDGLQIERALVATDDKVAFVDALSACGFARIEVTSFTSPKAIPALADAQDVMRRIARRPGVVYTAL
IPNIRGLERALEAGTDEMNLVMSCSETHNRANLRMTRDQSFDELAAILRRAGEAGVPCNVSLSTAFGCPFDGDVPAGDVM
RLARRLADAGAQGITLCDTTGMAYPTQVAQLCETFQRALPGAALTVHLHNTRGMALVNAVAAWQTGVTRFDAAAGGLGGC
PYAPGASGNVNTEEIVHMFACMGVATGVALAPLLDIVHGLPGLVQRALTNPLLAAGPRLATHQPPAWLAERFPAA
>SEQF2266_AEE68814.1 hypothetical protein BPTD_3641 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHLAKLRLLRGAALAAALAATLAAGASGGIAGQMVARAQPDGYTLLLQYSGFQAITPHVSSNLGWDPIKDFAPVANVLSA
PQVVVVRPDLPIKTLKDLVDYAKANPGKLNYASSGNGSLQQVATELLNQMAGIQITHIPYKGTGPALNDLLGGAVDLTIT
TPPPLLGHIAAGKLRALAVTGDKRLPSLPDVPTAAEAGYPDLIVSSWFAMYAPAGTPPAIVEKLSGEIRKIMATEAFRQK
AAEQGAEARYMDPKQLGAYTQEELDRWGKVVKAAHISAN
>SEQF2266_AEE68815.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68816.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLMNTSLRRSTPAGGQIVVNAERPAVFDQLHRPNYSGIPKYRLVLNAIAEGIESGHWKPGERLPTEDDLVQMTSYSLGTV
QRALRILVDQGLVVREHGLGTFVAQQLLRIQDPWHCRFLADDGVGFLPVYSTIISRDYASGEGEWQRYFDTAAGAQVILI
ERTINVGNEFEVFTRFYVDRNVFPSLWDTPMEKLNGLNFKKQITQELNVPVTKIDHFVAMEPFDPTVAGYTKTPPYAAGI
ALQVVACMGQERCIYYQKFFIPPTKRVLSIPDQLTD
>SEQF2266_AEE68817.1 hypothetical protein BPTD_3645 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSISLHLRRALAVLGLAGIAAAAPLHAAETWPDRPVRLIVPYPAGGGVDFAARLIASDLSKQTGQNFIVENRTGAAGTI
GAQAVVQSTADGNTVLFASPAEVLVSRIAGQKTSYDAGKDLQPVTLAGETPLAVVVNPAVPARTLAELVALARKDPSAIS
YGTPGTGSTMQFAGEALNLAAGIKMLHVPYRGAAPAIADLLGNQIPVAIVGVPPLVAHHKSGKLRILAVTGSQRIAALPD
VPTVAEELGVADYRYTNWFGVYVPGNTPAAVGDRLAALIHASVHRDAIKAQLAEQGVEPIGNTTPEFVRFLADEKARYET
VQRKSGIQMD
>SEQF2266_AEE68818.1 hypothetical protein BPTD_3646 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSKQGRHTAFLTKAAATAVLAAGSAASLAADPPKPLKINYGAPTADYYTLYVAKDHGLFEKHGLEPNFFWFASGAPLLA
GLKSESLDVFITGLASAFALGQNLPVKLLFWQLDDAPGQGLVVSKDSGIDSYRDLKKAKAIGTPSGTCAQVALGLMARKA
GIAMKELNVVNIAPPLYANAFTSNSIDAGVTWAPYLQSVAERGYKIVNYDTDYDGICPVMTGARTKFLQEHPDVGLKLVQ
ISAEAQRMVADNPQLAIDVLEKYLKVSPAVAKATYERLCCGNFPTFRQQADPESPYSLVSDKGIVAKLHTATQILAEAGT
IPQAISRETVAASIDASYVRQYLATQPGQ
>SEQF2266_AEE68819.1 GntR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTDAIRSEIFGQLARPDNSGIPKYRRLSNILVEAIRRGVWQPGDRLPAEEQLTEMTPFSLGTVQRALRALTDEGLVIRM
QGHGNFVADQQRQMADPWHCRFLDDESDGIVPIYSKAVQRAVVTPSETGPWQRYLHSGSVMRLDRIINVNDEFRIFSRFY
ADRELLQPLWHVPLEELDGANFKDIIMRQVGLPITEIDRSVRIRRIDAQAARLIGVAPEATVLFMQAVARAGRDACIYYQ
EFYIPETGRALQLPEQRPRVHGR
>SEQF2266_AEE68820.1 putative transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSERVAVEGRQPAISPTVFSVASVVGLLAIWTLVTNLGLVGPGYLPSPQAMFAQLVTLVEQGYGGKPLWDHVGASLFCAL
VGFAIGVLAGVPFGLFSGYHKAVGAMMSPIMAFIRPIPPIAFIPMAVLYFGLGEMGKVVLIVFTAFNYSFVSAQAGALSV
PMSYYRAAESIGMTRLQIFWRVVFPSSIPHIFTGLKVAMALSWAVVVAAELVGAQKGLGFMISDAAQLFQIPVVFIGIAL
IGLIGLVLNVMLTVAEEKIVHWKGR
>SEQF2266_AEE68821.1 putative transport system periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQSCLRLAASLLSAALLCLPAPGAAQTASPAKKELLKFNWGAPTADYYALYVAKDQKLFEEVGLEPNFYFFPSGAPLLAG
LKSKSLDVITTGLATVFALGQNVPLKLIYWELDHAAAEGLVVDPAAGIKSYKDIAKAKAIGAPSGTCAQVSLVLMAKELN
LKYSNLNIINIAPPLYGNAFKSKSIQAAVAWSPYSSILNADQLPVVNWASDYTPDQGVCPGLTGVRTEFMQQHPDIGLKL
VQVQAKAMDMIRKDPELGIGVLMKYLSVSREVAKHIYDREFSRIPTYAQQIDPASPYSLAAKDAGLARKLLIASQALAEV
GTIPAPLTPQAIAEAIDPSAIQRYMKGERK
>SEQF2266_AEE68822.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHGTRQVRRSAQARPGASQDNQVKISFQGVSKTYGGRGRSGNRTLALDRMDVDIKAAEIVTVLGPTGCGKSSTLNLIAGF
EQTSTGSLLIDGKPIDGPGPDRAVVFQQPSLFPWLTVMENITLGVKCRGVPKDTYEPRAQMLLREVGLSGFEKHYPYQLS
GGMQQRVQIARALISEPKVLLLDEPFGALDYQTRILMQELLLQLWQEHKPTIFFITHDVSEAIFVADRVLVMSHRPGRIK
LAVNVDADKPRNADFLSTPEFISLQRDLLHAVQEEVHANKNRPPMAKAA
>SEQF2266_AEE68823.1 putative enoyl-CoA hydratase/isomerase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARADDIEVRVADQVAWVTINRPQRMNALARATFAQLVEVSLELDQDPGVKVVVYTGAGERAFSAGVDLKELDAAGRMTH
PMGGLARNLNEVVLEMATPTIAAINGVAAGGGCELALACDIRVAASTARIGLPEARVGMGANFGSVVLPQLIPRGVALEL
LYTGELIDMALAHRLGLVNHVFEPAELMAQTAGLARRIADNAPLSVQRMKAMAFKSIGLPTAAALRLSVGPDPYNSEDRL
EGARAFVEKRKPRFQGR
>SEQF2266_AEE68824.1 hypothetical protein BPTD_3652 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFKRIALMGAAAMLAAAPAVHAQDKYPSRPITLVSPYQAGGTTETFARLIIDDVAAILGQPIVVEQKPGAAGTIGARFVA
TSKGDGYTLLANTSQHVMYEGMFKNLPFRPMEGFRPVGVLGSAPIIVVTGENSPYKTFKDVLEAARTRNLTFASGAQGSL
PHLTGERVAVQGKLNMTHVPFSGTAPALTNVMGGHVDLLYSTAASVMSQIRADKLRALAVSTKERMPELPDVPSIAEMGM
PGFDVTAWYAVWAPRDTRPEVVDAINQAMREASARPKAKKRMAALSVTPSTLTAAQFAAFAESERKTWLDVMRRANMQPA
N
>SEQF2266_AEE68825.1 putative zinc-binding dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAVVCREYGGPDVAAYEEVPAPALAPGAVRIQVQACSASFASLLVMEGKHQNRAPLPLIPGTEVAGVVTELGAGATRFR
VGDRVIAGVQSGCYAQEVVAPEATVFELPADVPFETGAQFPTIYGTAYGALQWRAQVEPGEVVLVHGAAGGSGLAAVEVA
KALGATVISTVGSDAKQAIVREHGADHAINYRTQDWRAEVLRLTGQRGADVIYDPVGGETFDASLRCIAPDGRIIPMGFA
SGAIPTVPANIVLVKNISILGVYWGYYFGWGRHPVRPGNDARLRAAYARLFEWTRQGRIRPRAHAVVPLADFRTALRMIA
SREAIGRIVMQPQQ
>SEQF2266_AEE68826.1 putative racemase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDGPLSGVRVLDMTAALSGPVATQILGDMGAEVIKIEPPEGDSIRDLGPARHRGMGAMFLHTNRSKRSIMLDLNLEGGRD
AFRRLAGAADVFVCNTRPKAMARLGLAYADIAALNPALVYLNIVGYGSAGTHADKPAYDDLIQAAAGIASLRADGDPARY
APIALADRVTGILAANAVLGALYHRARTGAGQHIEVPMFESIASLVLADHMAGLSFEPPIGPPVFDRYASIRRPFQTRDG
FLCMMVLTDRQWREFFRAVGRPEVMDDDRFGTMAQRTRNLEALYAIVSAIMATRDTDAWVAHLEAADIPVARIESVASLT
AHPHLAQAGFFQTVEHPTEGPIRSMACASTWSATQPAPTRPAPRLGEHNLEILREAGFSEEQTQAMFASGAARGYES
>SEQF2266_AEE68827.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHPVRTTLPADAVLLTPELENWVGIDYDDMPAVQRKLLDAAAKAFTTYGFAATSIDVIASQIGATKGSVYYHYRSKTDLF
FAVHKCAMVMNLKAQVPVAFDASLDPRAKLYRMAYLHAMLMMDSLYYQRVTVQGVELHQSVSTTPMEREALAEVIAMRDV
YEGLFSQVVRDGMASGHFAEADHSIAAKGILGILNWITVWYRPRETESPGFRQRVATQLATQATQAIQGIARADTRG
>SEQF2266_AEE68828.1 NADH pyrophosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIFIFRGDELLVRESGVDLPDGDTCAQVGVRFELMQQIWLTHDPQLRTTHVARDTVAPPGYAFRKLRALLSELGERAPLA
GRAFQIAEWVRTHRYCGVCATPMQHARHELCLQCPACGLHAYPRVSPAMMVLIKRGEHILLARHARYATARYTALAGFVE
VGESIEDAVHREVEEEVGLRVRDLRYFGSQSWPFPHSLMIAFTAEYAGGDLRVQEDEITEARWFGPGEPLPDIPMRESIA
GRLVRANLPPGMASD
>SEQF2266_AEE68829.1 putative oxidoreductase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLVVRAVTPLTAEIRHFELAAPDGAALPAYTPGAHLSVHVVLPDGTPARREYSLLGDGSATASYEIAVQCREPAAGSAW
MHRLAPGDRIEAEAPVNAFALAADAAEHVLIAGGIGITPILSMARHLRGAGAAFTLHYAGRARAAMAFAEEAAAMGAACR
LYHDDGAPLHEALPNILAAPAPGRHLYVCGPRALIADTVDGAAAAGWPPASVHYELFQGALALRGDQPFDLVLRQSGITV
SVPAGQIMLDALLQAGVEPLYDCRRGECGMCLTPVLEGKPDHRDHYLSPREREAGDAVCVCVSRACGASLTLDL
>SEQF2266_AEE68830.1 putative amidase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTSLHRAPPLSAHTTRAAVLDGHASAELLEPCLAAIRAHEPVVRAWRELDVDAARAQARRLDTHAARGLLAGVPIAVKDI
FLTEQFPTRYGSPIYEHGIAGTDADCVARARAAGALVLGKTVTTEFAYFTPGPTANPRDPSRTPGDSSSGSAAAVAAGMV
PLAFGSQTAGSLIRPASYCGVFALKPTHGLHSLAGAKAMAPSLDTLGWLARDAGDLELMRCALAGEDYRPLPDARPAALR
LGICLTHEWHAIEPDGAQAFAHAQVLCTAAGAQLAPLVLPDALQGLMQAQQTIMAYEAARSLAAEWRDARARLSPAMQAL
IEAGLGCDAQSYAQALALAARGRAHLEHAMRDLDAVIAPAAPGEAPPGLARTGDPIFSRVWTLLGLPCVNVPGLAGPHGM
PIGVQLIGRPGDERRLLAVAAALHRVFHPTGAPQ
>SEQF2266_AEE68831.1 putative zinc-binding dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRRVPENLFATRYRGSAAMTIGIAPMPSPRLRVRVQACLGDAGGLRLPGVAFIGSAGPGRRVAALATQAAAPGADIEIDA
GQAWTVADGLDEQSALLLAVLWPSAWIALVEIGGLRAGQQVLVHEADTPLGLLATVLARQADASVIAAARTAGGIAAALR
AGAAEGVLYGDPWPELAREHGGADLVFDPGAGRYAVASLPCARRRARMLALDMHDGPAGPPIGAAQLLRRQTSLAAAGWD
LVRDAPALQRACRALPPHWPRIAALLPLRPLSLSTSQEALP
>SEQF2266_AEE68832.1 LysR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRAPDFSLRQLSYFLAAAECESVQQAAQALHVSAPAVSTAIAHLEALLGVQLFRRRHARGLILTEQGSAFAVQCCGILQE
AWGLGSLQGRGELHGQVRVGCLTTFAPFVIPPLLTRVQQHLPGVRLAWFEGHHEYLLEGLRTGTLDIAVLYDFEIPSGIK
LVALRAAPLQVVLPASHALAAKETLATSDLNTEPLILLDLPRTREYMLTAFSSNGAIPRIAHSVLSINMLLGMVAAGHGF
SLLNFCPPNALPGMGGIVSRAFESHVRQPNIVAAYSFRYHYPRAAAAIVEHISELVDELVIQAH
>SEQF2266_AEE68833.1 hypothetical protein BPTD_3661 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKLWKIMAVAALAAGPAHVALGQDIKIGALLETSGAIASLGQPTLEGAQLAIDQANAAGGIQGRKIVLVNVNSESDNTKT
VSGARRLLSQEKVSAVIGPVSSGSNFAVADVIERAKVPMIANGASRGIVLPPEKRRYTFIAPLTDEIVQTVMLRDMQARH
ITKVAMLHSDVAFGTNGRDTLNRLAAQYGVQVVATETFGHADTDMTPQLTKLRGSPAQAIVIWATGPGLAIATRNHRALA
IDTPLYLTHAANDFNYLRLAGEAANDILLPSSKLYVAGSLPSDDAQKAGLQSFVAAYTKKYGKPPATFSGNGYDSANLLL
QAMRAAGSDPAALRAQLEKGERYVGVTAIYAYGPEDHFGAKAESVRMLTVSNGAFELAAAP
>SEQF2266_AEE68834.1 hypothetical protein BPTD_3662 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSPDTLDPRDAAAWRAVTAVRPVLAGLLPAREAFAYPQRTLLHAGPPLPGDGEIPWPMLNSIVNAALYEGWAVDRADAL
YGVRTGAIRLAPAQDHRCVVPLAAILSPSQHVQVVRDAAGRAAPCHAALNGGNRWPIRLGRPETEVAEHLRWLNGPFAEQ
LRAGCEAGIDLVELADQALAAGDDCHGRTLAGTQALAASLRALGHAPEDGAVADYLAQSPGFFLNLWMAASKCMLSAAEG
MAGSSLVTAMGGNGREAGIQLAALPGRWFSRRCGAPRGALEPGLSGAQPLPAIGDSAVVEALGLGAMAMAHSPAQQQALG
AYMPEPAAALGAALLGPAHPAFERSHPRMGLAARAVAATGKAPVVALGMLDSLGTAGRIGGGIWTADPGLFAHALEFMAQ
HQQGESR
>SEQF2266_AEE68835.1 branched-chain amino acid transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSSAIMLDVQRVGIRFGGLQALDDVSFQVRRGEILALIGPNGAGKSTLLNIVSGALAPGQGKVCFENEDVTGLPAHEVN
VRGLARTFQAAEILTALTVRENVMAAGVRRSGSGFLAGLAGLGWKTGTAQTLSEQAMMHLKTVGMAALADTSAAQLTAGQ
QRLLAAARALASGARLLYLDEPGAGLNSVEKDMLAGAIEQIRANGATVVFVEHNLAFVGRLADRIVVLNHGRILAQGEAA
AVRADPAVIAAYLGNTEIRPGLRPEAANAEAATVLEIDRLSVRYGALQALSDVSLQVRQGEIVSLIGANGAGKSTLLKAV
AGLLRPQAGRIAFRGADLASVPAEARTGAGIALAPEGRSLFPSLTVRENLMMGHYACVRRGGVMQLLAPRRETVAAMNQV
MEEITALFPRLAERMHQQAGTLSGGEGQMLAIGRALMSRPQLLMLDEPSFGLAPQIAREILESLPRLTERGLTVLLIEQN
ARAALQVSDRGYVLVNGRLVAQDTSASLLARSDIGEAFLGWEGADTPTRRQA
>SEQF2266_AEE68836.1 branched-chain amino acid transport system permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKKLPLVLTLALLAAVYSTGNAYLINLFVVCAIYALPAIGLSLLVGHCGQISLGHAAFVGIGAYAAAIASQRWDMDPWLA
VLFAAALACAAAWAVGKLVFRLRGHHLAMATLALGMIVHTVLVEWHDVTGGPDGISVAGVLKVGSLELASDPAFFVLGWL
AVIVALILADNLIRSPFGLALRVVGESELVAGSIGIAPARVKQLIMMASGALAGLSGGLYTFWTGYISPDPFNVALSIKL
LLIVALSGFTGTWRTLVGVFFVVLVSEGMKSFGHLDVILYGLLLILTMLFPVQRLGNALRHLLARRANRAKAPVIKANVL
>SEQF2266_AEE68837.1 branched-chain amino acid transport system permease [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEFLQYLVSGLVVGCIYGLVAIGFTAVYNVTNIVNFAQGEVSMLGALATASMLAAGVPLPLAVVACVLLVGALGVVLER
FALRPVGNHAIRGIIITIGISVVLQGLAVVTWGTDAQSLPAFSGSTPISVYGVSMQPQAFWVLGTSVVLMAVLYVFLTRT
YLGRSFRACAMNPQAAALMGIPSSVMRGLGFFLSGAVGAIAGIIIAPIALMQYDSGAALGIKGFVACIMGGFGNPVGAAA
GGLLLGLLEAFSAGYISSGFKNAIAFVLLLAFLLVRPGGLFGEFDKVKR
>SEQF2266_AEE68838.1 hypothetical protein BPTD_3666 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSPVHPGKVAWTGDNPGIYLKEQDDGPWTGLATYFHINYSPYGMGRGVLLLEQPDIAATLPQACNVCITDNEPLARYLM
KEFFARFNSFRVSAGTEAISYLPLTEARSAGDTRSRYQEILRSRDIEVVLTWDGLTEPYAVDMPPEKGPTGRHEMYSLFI
DATDASITLNGKPLRGRVTTRNFDGGKKSSAFLAFSESWMETPSDGTDKRTT
>SEQF2266_AEE68839.1 iron-sulfur protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MEKKIVLVKPYSAYERDKTPAENADLTRVEKGSPMGEYLRRFWQPVALSEELGELPTAVRMFGENLVLFRARNGKPGLLE
KHCSHRGTSLEFGICEENGLRCCYHGWLFGVDGQILETPGDPPDSQLRFNVCHGAYPLHEYRGIIFGYFGPPADKPEFPV
YDTYDIPGDRLVPYCITYPCNWLQVHENVMDPAHAVFLHTRISFTQFAEAWGELPEMDFVPTPTGMIYVTSRRWEDKVWV
RSNDIVLPNLAQVGHIWEDGLTPKEFARVAITRWTTPIDDHTCRIIGWRHMHPDADPRGLADESLCGVETVDFFGQNGER
PYADRQRMPGDYDAQISQRPIAVHAMENLTRCDRGVAMLRQLLRRESRKIANGEAPAISPLRANGATPTYAHDTVVSIPP
ADTDDAACVREIGKAITAIVVKGDHHEQADRPEQVRERIRAYAAEQASTATSE
>SEQF2266_AEE68840.1 hypothetical protein BPTD_3668 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKTARDSQPADPHAQSWPHRPVNARKGTDVMPMPEEAPQVAGMPRRGRAIAEPGDPGVITPEDDVLDTSHLSNPQR
>SEQF2266_AEE68841.1 hypothetical protein BPTD_3669 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAAPRLPYPIPIALTDALDRSVSAELVAVLVAVTQGEPRVLTTEDARALPAGPFELAHRSLQAGLRAWVETQTHHPLGYV
EQLYTFADSDRSNEAGARVISVSYLGLTREAGATGVAQVGWQHWYRYFPWEDWRAGRLAIIADEIAPRLLAWAGAGADAA
ARAQRRQRVALTFGLDGAGWNEDMVLQRYELLFEAGLVPESRHPDASGLPVAGQSMRHDHRRILATGIARLRAKIKYRPV
VFELMPPEFTLLQLQMAVEALAGRGLHKQNFRRLIEQQELVEETGGMASGAAGRPAKLFRFRRDVLLERAIAGSKLPLAR
QF
>SEQF2266_AEE68842.1 nicotinate-nucleotide pyrophosphorylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSINIGQAAPLAIDAAPTLRTAPAPLPQVMLEPLVRAALLEDLGRAGDITTDAIVPAQARAQTRLVARQAGVLAGLDLAR
LAFRLVDPEIEFHALLPDGAQLQPGAEIALIRGPARGMLTAERTALNFLCHLSGVASATASIVAAIGAGHTKVTCTRKTM
PGLRAVQKYAVRVGGGSNHRYGLDDAVLIKDNHVAIAGGIDAAVQRARAAIGHMVKIEVEVDTLEQLRVALRLGVDVVLL
DNMDLDTLREAVALVDGRAVTEASGRITPETAPAVAATGVDLMAIGWLTHSARVLDIGLDS
>SEQF2266_AEE68843.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68844.1 putative glycosyl transferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRILQLNFEKGWRGGERQTLYCMRAFRKAGHDVELLCRAGGPLQARAAEEGFVTHGRRNVPGQLGFLASAGASYDIIHAQ
TANTVTWAVLTKALHRRPVAFSRRTSFVVEPGEEWKTGFKWRRVDLFVAISEMAAGEPRRLGIEPVIIRSAVEPHVIDPV
NVERLAREFALQGKKVLATSAALIHDKDPLTLVRAVGELARQRQDFVFLHFGAGGDREAQARAEAQALGLDGVYVFAGFR
KGVEDFYSIMDVFVMSSLEEALGSSVLDAFLQRVPVVSTDAGGLKESLADGRGVLCAVGDHHALAAGMARCLDDAAFRAD
VTQRAYDYVRTEHDVTEMGRRYLARFEQLLARR
>SEQF2266_AEE68845.1 putative UDP-glucose 6-dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKITVVGTGYVGLVSGACLADMGNEVLCLDTDAAKVAMLREGHIPIYEPGLEDLVKRNVAGGRLQFTDDIAASVAFGDVQ
FIAVGTPPGEDGSADLQYVLAAARSIARHMTARKVVVDKSTVPVGTADKVRAAMQEVLAERGVEVPFSVASNPEFLKEGA
AINDFMSPDRIIVGTDDEHTIDTMRRIYAPFQRTHERVMVMDVRSAELTKYAANAMLATRISFMNEMANLAEALGADIEQ
VRRGIGADPRIGYHFLYPGIGYGGSCFPKDVQALMRSAGEHALPMRVIEAAETANQAQKLRLAHKVVARYGADLQGRTFA
LWGLAFKPNTDDMREAPSLSTIADLTRRGARIRVYDPVAMPQAAKVLDDNPAVELVDDMYQALDGADGLLIATEWKVFRA
PDLTRVKQLLKAPLIIDGRNLYVPADMRAQGFDYQGIGRA
>SEQF2266_AEE68846.1 hypothetical protein BPTD_3674 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIGEDASAARCGSRNSPPDGLPTPRRYWAAATVLTGMSLAVLDATIANVALPTIARDLNAAPSDAVWVINAYNVAVVVML
LPMSALAERVGFRRMFTFGLLLFTLSSLACVFAGQLWHLTLARVCQGVGAATLMCMFGGLVRNIYLLRMLGRGISINATT
VAVMSVLGPTLGSLILSVASWRWIFAVNLPIGIVIMCGLRFLPEVPRNKMPLDWLSALLAMLTLGIFISGVDLLGHDVLR
GIGMIAVAVAIGWLLVRRASGQTAPLVPVDLLRIQAVAYAVAASACTFAAQMASYVALPFYFQQVLERPYLQIGLLMAAW
PVGTAVVAPVAGRLSDRYAASTLSGAGAGIMALGMACLTLLPTTVSNPWIMAGMFLTGLGFGLFQTPNNRAMLSSAPRQR
SGAAGGVQATTRVFGQSFGTALVAIAFSVYPQHGPTLALALGTVCASLGVVVNVVRRRAEA
>SEQF2266_AEE68847.1 UDP-N-acetylglucosamine synthesis bifunctional protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNVVILAAGLGKRMQSDLPKVLHTLAGRPMLDHVIGSARQLQPARIIVVVGHGADRVKAAFEGQPGLQFALQQPQHGTG
HAVQQAVPQLLEGDGEDDVTLVLYGDVPLVQPATLQNLLQARGRGVAVLTEVLADSTGYGRIVRDAQGQVCRIVEHKDAS
EAERAIKEVNTGILAAPTARLKDWLGRITNDNAQGEYYLTDVIGLAVGDGVPVGAAQPGASWETLGVNSRVQQAQLERAW
QSELARRQLEAGVTLADPARFDVRGTLSCGRDVFIDVGCVFEGTVTLGDGVRVGPHCVLRDVAVQAGARIEAYSHLQQAK
VGQEAVVGPYARLRPGADLGERSHVGNFVEIKNSVLQADSKANHLAYIGDADIGARVNVGAGTITCNYDGVNKHRTVIED
DAFIGSDTQLVAPVRVGKGATLGAGTTLTKDAPAGQLTISRARQSTIEGWKRPVKKS
>SEQF2266_AEE68848.1 hypothetical protein BPTD_3676 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDSHTNPFVLPGMGQNSDLSGNPLLASMEMMRQAWAGLAGPGGLTQALPMAVPMNLEDLDRRINELRSVENWLRLNLSM
LSSSIQGLEVQRATIATLRSFVDSVSSVGADEAAGGASPLEVALGLKPAPQGGGAPTGQAGGQAAAPAAEAGAVPPSINA
AAQSASQAWWDLMQQQFNNLAAATAASMQAPAGETPPPGAADAPPAAAGKPKAARKSAAKPRAPRKRAPAKGAADKP
>SEQF2266_AEE68849.1 hypothetical protein BPTD_3677 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRPSESAPRRRLHPLLGAAAVSVIILSAVAVAAMTGVLPNLSAGSSPQAAASAQEAALAGPEAANVASAPQQAPKQAQK
PAQSAQPAQQPAQAGAPACATCGVVEGIRTVQVPVRDDSNHLIGTVAGGVVGGVVGNQFGGGHGRDALTVLGAVGGALAG
REVERNIREQQTVTHYELTVRMSDGSRRQFRSAQPFAFASGDRVRVENDQLLPG
>SEQF2266_AEE68850.1 hypothetical protein BPTD_3678 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDTPITLPELEQAINYWRHRAPSQGDESRLCAQAAALATPYALMIIGHRRDITPAELSQAARAAYQAWLDSRK
>SEQF2266_AEE68851.1 SCO1/SenC family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFAFTSARRRALQAVAAMGVAALLAACGESAPAFKGSDITGTQLGKKLALVDHNGKPRTLQDFAGKAVVVFFGFTQCPDV
CPTSLAELSQVMKQLGPDADRVQVLLVTVDPERDTPEILKQYVTTFDPRFLGLTGTPEQIKQAAASFKAYYAKVPTQDGA
NYTMDHTAAFYLFDGKGESRVLATNTAGAEALAHDIKALL
>SEQF2266_AEE68852.1 protoheme IX farnesyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSLAAPQTGLLRQYLVLTKPRVTQLAVFCAVIGMFLAAPGMPDLSHVVFGTLGIWLLAAAAFAINCLIEQEVDARMLRT
ARRATARGTISDIQVLSLSGLLGGAGMLVLYHLVNPLTMWLTFATFVGYAIIYTVILKPRTPQNIVIGGLSGAMPPALGW
AAVADSVPAEAWVLVLIIFIWTPPHFWALALYRNNDYIKAGLPMLPVTRGQQFTRLHILLYSFALLATTLLPYAIRMSGA
LYLASALALGGMFVWYAWRLYREYSDALARRLFRFSILYLALLFGALLIDHWVGLLR
>SEQF2266_AEE68853.1 putative cytochrome oxidase assembly protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDRIKQRYRKLVFFTWFLTLDLIMFGAFVRLTDSGLGCPDWPGCYGSVTPLGAMSDIHQAASSMPFGPVTLSKAWIEMIH
RYVGAFLGMLIIAIVWMAWRYRRELGRSPALAVGALIAVCVQGAFGAWTVTHKLMPVVVTAHLVFGLLVLSLMTWLSARE
RPHAPLSPQTRRWRPWMTVGFLLLLAQITLGGWVSTNYAALACMDFPTCHGQLLPEMDFHGGFSLIRALGELPSGEMISQ
HALTAIHWTHRNFAFVVFAYVGVLAWRLRGEPGLRGPATLMLALLAAQLFTGLTTIFFQWPLLIAVLHNGGAAGLTLAAV
VILVRLADAPQAAGVIRPQFDRV
>SEQF2266_AEE68854.1 hypothetical protein BPTD_3682 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARSFAPSAPKRSMLPLVLVFLCALAPVLAAVIVYNNPQWWPEDSSNYGTLVQPQRPMPTAQQLQLTTLDGKPFDPAGLK
GKWLLGVADQAACPESCARKLFITRNSHASQGKNVDRVQRVWFITDDGEVPQKVLDAYRGTLMLRARPEQLGRYLLGQDA
AASAALFGPMWVIDPLGNLMLQFPPDADGVKVRKDISRLLYNSRIG
>SEQF2266_AEE68855.1 hypothetical protein BPTD_3683 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAALLLLGIAAAILASLGRWQLHRADERRAVLAAIEGGRALAPLALAPDTPAPQLTAWRAASAEGQWLPQFSVLLENRNH
GGRPGYWLATPLRLHAGGAAVLVLRGWLPRALGAGQTLSVPAPPAGPQAVTGELMPRVPRLFELWSFGDARAGKLPDTLP
ASGALPPVVQNLQLDDYARASGLTLLPTVLMQTGEHNDGLARDWPQPSVDYNQNIGYAMQWFAFAGIAAIAWLVVAARAW
RRRRQA
>SEQF2266_AEE68856.1 hypothetical protein BPTD_3684 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRVIVIVAFIGILASLASALVYLMKDKGSTNRTVNALTVRIGLSVALFLFVLLAHHLGWIESTGLR
>SEQF2266_AEE68857.1 putative cytochrome c oxidase, subunit III [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSASHSVQGKEAPYYYVPADSGHPVRTALALLAMGLGAAGWVNGAVWGKWVVLAGVIGLFLTLYFWFGDAIQESESGLYS
KRIDASYRWGMSWFIFSEVMFFAGFFGALWYVRTITTPWLGDLDHKLLLWPDFNATWPNFGPAGVVEHFQTVGPFWLPTI
NTALLLSSGVTLTIAHHALRENLRGKAIFWLFATVTLGFIFVACQAAEYIHAYADLNLKFNSGAYGSLFYMLTGFHGFHV
IVGATMLTVILIRLIRGHFTADNHFGFEGAAWYWHFVDVVWLGLYLFVYWF
>SEQF2266_AEE68858.1 hypothetical protein BPTD_3686 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDDLHKLSQRKLSFFQTMKAVLWGFFGVRKGAGYQDDIARLNPVHVIVAGLLAAAIFVIALVAIVRWAVAGLA
>SEQF2266_AEE68859.1 hypothetical protein BPTD_3687 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTPEQRRRNRNVALILLALVAAVFVWTFIRGAVLFAGVTG
>SEQF2266_AEE68860.1 cytochrome c oxidase polypeptide I [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSVTVDHVSPGHGHGHDDHHHAMPSGWRRWLFATNHKDIGTMYLIFSFFMLMEGGVLALLLRTELFEPGLQFFRPELFN
QFTTMHGLIMVFGAVMPAFVGFANWMIPLQIGASDMAFARMNNFSFWLLPVAGIMLTVSFFVPGGATAAGWTLYAPLSAQ
MGPGMDLAIFALHIMGASSIMGAINIIVTVLNMRAPGMTLMKMPLFCWTWLITAFLLIAVLPVLAAAITMVLTDRHFGAG
FFNAAAGGDPVMYQHVFWFFGHPEVYIMILPAFGIVSAIVPAFARKQLFGYASMVYATAAIAILAFIVWAHHMFTTGMPV
TGQLYFMYATMLISIPTGVKVFNWVATMWRGSMTFETPMLFSVGFIFVFTIGGFTGLILSVAPIDIQVHDTYYVVAHFHY
VLVAGSLFALFAGTYYWLPKWTGRMYSEKLGKLHFWSSMISFNITFFPMHFLGLAGMPRRYADYAAQFTTFHQLATIGAF
WFGLSQLIFLWAVLRCYRGKGEVASAKPWEGAEGLEWTVPSPAPFHTFETPPEVK
>SEQF2266_AEE68861.1 putative bifunctional protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPCFEVSMKKWRGILGACALLIGSAAAAQVQDMPGGPRVNQLNLHEGVTQISRDVVWLHWMMLAICIVIFIGVFGVMFYS
IWAHRKSRGHKAATFHEHLGVEVAWTVIPFLIVIAMALPATKTVVAMKDTSSADVTVKVTGYQWKWGYEYLDGEAAGIKF
LSTLSTPRAQIENREPKGQFYLMEVDNHMVVPVDKKVRVVLTAGDVIHSWMVPDFGVKQDAIPGFLRDAWFRAEKPGIYR
GQCAELCGKDHAFMPIVVEVLAQPEYDKWVADQKKKMAASADDPNKEWTQAELVARGEKVFAANCVACHQANGKGIPGSF
PPLDGDPVVLGPKAAQINTVLKGKPGTAMAAFGGQLNDVEVAAVITYTRNAWSNAGKGQDPVVQPKDVVEAR
>SEQF2266_AEE68862.1 hypothetical protein BPTD_3690 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDTHYASQQRLTRLYAELGQRAQALPPDQARPLYIAGHCCGWVTHAACDALRASGLADLQPDADGLRIGADLAPGPTLD
ALLAQVAQSLRDARCLRGWRDELLDVCAGDLRLGAIERAAVRPLGLNTRAVHLNAWTPQGELWIARRAMTKSTDPGMWDT
LVGGLAGSGENLETALVRECGEEAGLDPHQLEQRTPLRTILHMHRRLPEGYQVEDLLTSTCVLPADARPANRDGEVMEIA
TTSVDHAVRRIEAGEFTLEAALVIVEDIMQRRAEGTT
>SEQF2266_AEE68863.1 sodium/hydrogen exchanger family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDIGFLVFGLAGLLTLVCFMPPLAGRLKLPYSVLLALVGCLLGIGVHLHGWAPPVLGDLLDTIEHFEISSETFLMVFLPV
LLFETALSMNVRRLIDDIGPILMMAIVAVVVCTLVVGFAVDAVSSYGLIVCLLLGAIVATTDPAAVVGIFREVGAPKRLT
TLVEGESLFNDAASIALYSVLLAALGGSGELSVGAVFNDFIFHFVGGGLAGFLMGRLACALFAWLRGFPTAEITLTLTLA
YLSFFISEHYLGVSGVVATVIAGLVVDSTGRTRMSPTTFEFLSSAWGQFGFWANSLIFLFAAMLIPKLMAEADWQELLLV
LVVFAATLAARAIVVFGLLPLLRVARIGAEVSNPYKSVMWWGGLRGAVSLALALAVTEQSSVPEQARQFVAVATTGFVLM
TLMINGVSLRPLIRMLGLNQLSPVERTIRNQVLAAALEDLQGRTEEIAKVDHVNPEARDRIRAMFDASLTSVHDGQVGQM
TLDQRVAVGLSIVARREEEMFFDILKAQIVDWRLAEGLLARAERLEDAVRAGGLAGFEAGIVADVRYWRLFRMALRTHYM
FGFQGWLARELGKRFASLLTKRSVARDLMKFAREQVAPLLGEEAADRIIAAHQRRLDLIENALQALTLQYPSYSLWLQES
HLGRVARELERRRYRDMLEQFLISGEVYADLMAQLKARWQHIDKHPPLDIELGSAELVKRVPLFEGLSQDSLRAICRLLK
PRLALPDQHILTEGRHGQEMCIVASGAVVVHLPDHTTIELGSGEFFGELALLGEEQLVPDVTSLGYSKLLMLSARDFHAL
LARDEHLHERIQTVAKQRMRAIEVWKQYSQAAAAAAASTASEDSAPA
>SEQF2266_AEE68864.1 hypothetical protein BPTD_3692 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDSAAPVRADAPAVLVQLTDMHLFDEPHTAMLGVDTEASLQAVLRQVGEDGLNPDALLLTGDLSQDGSPASYQRLHALL
AQTGLPVRCLPGNHDAPATLRAELGAWSDPVLDLGAWRIVLLDSTVPGSNGGHLADDQLDLLSRAARLAGDRPLLVAVHH
NPVQGDPDWHDTMMLDNAQLLFQRLQRLPQARVLLWGHVHQEFDCRRHNLRMLATPSTCFQFVVRDGKHCVDDAAPGYRW
LKLYADGSLATGVRRLDGDRWRALLRQNAG
>SEQF2266_AEE68865.1 RNA polymerase factor sigma-32 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVDNLPLEAANMTQPSSSLALSGNALALAVANPGALGTIDAYISAVNRLPILTAEQEGQLARRLRDEGDLEAARELVVS
HLRLVVSVARQYLGYGLPHADLIQEGNVGLMKAVKRFDPERGVRLVSFAVHWIKAEIHEFIIRNWRLVKVATTKAQRKLF
FNLRSMRPDGQTLDPEQVDHIARELNVRREDVSEMEVRLSGRDLSLESQDDDDDSFAPIAYLSDEGRQEPSRVLDRMAHD
DLQGAGLGRALEALDARSRRIIEARWLQDDGGLTLHELAQEFGVSAERVRQIEAAALKKMRGALTPA
>SEQF2266_AEE68866.1 hypothetical protein BPTD_3694 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLPGLAMLFGRGGPRDEAGRRVFRLRPVRRLFGLLLLALAGVSGLLALSLVQFVRLTDDKPVAKVMVRQQGDGQFQLAT
RTPDQRMRDYTLYGDQWQIDAKVVRWRLPALLAGVPPLYRLERLSGRYQDTARERSAPRSVHALDDWPAPDLAQVKRLVP
NWLPFVDVQFGSAAYMPMFDGARYQVYLDPRGALFIRPADAVTAERLKQLGW
>SEQF2266_AEE68867.1 putative esterase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVLELVSQHRCFDGWQRYYRHASKEIGLPMRFSVFVPPQAAHGPVPVLFYLAGLTCTEETFMIKAGAQRLAAQHGVMLV
APDTSPRGAGLPGEDEHWDFGVGAGFYLDATAEPWRSHYRMYSYVVDELHGIVTGELPGDAGRVGIFGHSMGGHGALVLA
LRNPDKFRSVSAFAPVVAPAQVPWGHKAFERYLGPDRQAWEAYDASALMRTLRQPYPEGILVDQGLADGFLVEQLRPELF
EAACRHAGQPLTLRRHKGYDHGYYFISTFIEDHIRFHVERLG
>SEQF2266_AEE68868.1 alcohol dehydrogenase class III [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTKAAIAWKAGAPLTVEDVDLEGPKAGEVLVEIKATGICHTDYYTLSGADPEGIFPAILGHEGAGVVMDVGPGVTTLKK
GDHVIPLYTPECRQCKFCLSRKTNLCQAIRTTQGKGLMPDGTSRFSIDGKPLFHYMGTSTFANHIVVPEIALAKVRPDAP
FDKICYIGCGVTTGIGAVVFTAKVEAGANVVVFGLGGIGLNVIQGAKMVGADKIIGVDLNPAREAMARKFGMTHFVNPSE
VENVVDHIIQMTDGGADYSFECIGNTKVMRQALECCHKGWGQSVIIGVAEAGAEISTRPFQLVTGREWKGSAFGGARGRT
DVPKIVDWYMEGKINIDDLITHTLPLDRINEGFDLMKRGESIRSVVVY
>SEQF2266_AEE68869.1 hypothetical protein BPTD_3697 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MARLPRLYAPGLPQLVQANFVQPLVPPSQPAPQDILNQLGSWLGESAQRHRVGVHAWVLANDRILLLATPADEEGLPRLM
QTLGRNLAARLRGGRVFAGRYRSALLEPGAWVLPSQVWLETYPVRSGAATEPDGWPWSSAGSHTGNTGAPPAQWQSDHAD
YWACGNTPFDRQANYRRLLHDGLSREQTQRIEQAVSGQWALGSPAFIASLAHTASRRVAPGQRGRPRKKPAPAAADTPDT
PGTVHTPTTPNTSN
>SEQF2266_AEE68870.1 glutamate synthase [NADPH] large chain precursor [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPYTKSSDSCRPVAATPIDASRIGLPAPQGLYHPHNEHDACGVGFVAHIKGRKSHSIIQQGLKILENLDHRGAVGADKLM
GDGAGILIQIPDALYHDELAQQGIVLPPPGEYGVAMVFLPKETASRLACEQELERSVRAEGQIVLGWRDVPVDVEMPMSP
AVRGLEPVIRQLFIGRGADVMVPDALERKLYVIRKTASHAIQNMRLAHSKEYFVPSASVRTVVYKGLLLADQVGRYYRDL
ADPRTVSALALVHQRFSTNTFPAWPLAHPYRMIAHNGEINTVKGNFNWLRAREGMMQSAVLGDDLKKLYPIVYEGQSDTA
TFDNCLELLVNSGYSLAHAMMMMIPEAWEQHTQMDESRRAFYEYHAAMMEPWDGPAAVAFTDGRQIGATLDRNGLRPARY
LITDDDMVIMASEAGTLSIPENRIVKKWRLQPGKMFLIDLEQGRIIDDGEIKLQLANSRPYRQWIERLQVKLESLPAPRT
ASPATQTAVPLLDRQQAFGWTQEDFKFILEPMAASGEEVIGSMGNDAPLAVLSNRSKPFYNYFRQLFAQVTNPPIDPIRE
QMVMSLVSFIGPKPNLLDINNVNPPLRLEVTQPVLDFAAMAQIRDIDQVTGKKFRSYELDITYPAAWGSEGIEARVAALC
ARAVDAVQSGYNILIVSDRLVDADRVAIPALLATSAVHQHLIRAGLRTNAGLVVETGSAREVHHFALLGGYGAEAIHPYL
ALESLGHLADPDKAIKNYIKAIGKGLNKVMSKMGISTYMSYCGAQIFEAVGLQRALVDKYFTGTASNIEGIGIFQVAEEA
LRMHHAAFGNDPVLANDLDAGGEYAFRIRGEEHIWTPDSIAKLQHASRSNNYRTYKEYAQIINDQSRRHMTLRGLFEFRF
DPTRAIPLDDVEPAKEIVRRFATGAMSLGSISTEAHSVLAVAMNRIGGKSNTGEGGEDELRYRAEMRSGGSAIKDGDTLA
SVLGNDRVEADVALRAGDSLRSRIKQVASGRFGVSAEYLSSADQIQIKMAQGAKPGEGGQLPGHKVSEYIAKLRYSVPGV
GLISPPPHHDIYSIEDLAQLIHDLKNVNARASVSVKLVSEVGVGTVAAGVAKAKADHVVIAGHDGGTGASPVSSIKHAGT
PWELGLAETQQTLVLNRLRSRIRVQADGQMKTGRDVIIGALLGADEFGFATAPLVVEGCIMMRKCHLNTCPVGVATQDPE
LRKKFQGKPEHVVNYFFFVAEEVREIMAQLGIRRFDDLIGRTDLLDMRASVEHWKAQGLDFSRVFHRIVSDADVRQTEEQ
DHGLAGALDHQLIERSKPALERGEKVSFIVPVRNRNRTIGAMLSGAVAARYGHDGLPDDTIHIQCNGTAGQSFGAFLAHG
ITMDLVGEANDYVGKGLSGGRIVVRSPNDFRGFGPDHIIAGNTVLYGALSGEAFFNGVAGERFAVRNSGAATVVEGTGDH
GCEYMTGGTVVVLGTTGRNFAAGMSGGVAYVWDPDRTFRERCNSAMVELEPVLPHAEQQSANEIESWHSAQRGGERSTDE
TILRRLVEDHFRYTGSFRAREILGDWEASCGKFVKVMPTEYRRALGELWRAANPQQMAA
>SEQF2266_AEE68871.1 glutamate synthase subunit beta [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGKITGFMEFQRLQEAAEAPQKRLKHWREFVLHLNDEQAKQQAARCMDCGIPFCSNGCPVNNIIPDWNDLVYRQDWRRAL
DVLHSTNNFPEFTGRICPAPCEAACTLNINSDAVGIKSIEHAIIDKGWAEGWVTPQVPVRKTGKKVAVVGSGPAGLACSQ
QLARAGHSVTLFEKSDRIGGLLRYGIPDFKLEKSQIDRRIAQMEAEGVEFAPSTYIGNPDDAAADGLTVRTPQSLLADFD
AVVMTGGSETPRDLPVPGRELSGVYYAMDFLRQQNKAVAGDRLSGQTLAKDKHVVVIGGGDTGSDCVGTSNRHGAASVTQ
FELLPQPPECEDKPMVWPYWPLKLRTSSSHDEGCERDWSVATKALAGSDGQVEKLVGVRVEWFKDEATGQMKMREIEDSE
FEIPADLVLLAMGFVSPVATVLDAFGVDRDARGNVRANTDDYRTNVDKVFAAGDMRRGQSLVVWAIREGRQCARSVDEYL
MGASELPR
>SEQF2266_AEE68872.1 putative outer membrane protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYTLYRQGRATLGAALLAAGLLAAPARAHEAGDWLLKVGASQVRPKSNNGSVLNGSVDLDANNSVRPSFTVTYMATRNIG
IELLAAWPFEHDIRGSGLGRIASTKQLPPTLSVQWHFLPDSTVQPYVGVGLNYTTFFDTKTHGALEGSDLRLGDSWGLAG
QLGVDVKLNERWFLNADLRYIDISSKVKLDGQRIGTARIDPWVATVAVGYRF
>SEQF2266_AEE68873.1 hypothetical protein BPTD_3701 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKSFRPLAAALLAAATLAAAGPARAQADSWPSKPITLIVPYAPSGFADTRVRLLARKLGESLQQSIVVENKAGAGGVIGT
NLVAKAAPDGYTIGTGNLAPMAVNPTLMPAIPYDAQKDLAPVVLIENSPLVLSVHNTLPVKNLQDLIALARQEPGKLTFG
SSGVGGAHHLSGEMFREQAGIDIVHVPYKGGSLAATDLMGGHITMMFEMGYSALPSIQSKKVHPIAVTSLKRLDVLPDVP
TMAESGLPGFESYNWQGIVAPAGTPAPIIARLNAEFNKILKDPEVVKAIADTDSQAGGGTPEEFGAFIKSETEKWAKVIK
AGNISLQ
>SEQF2266_AEE68874.1 putative ABC transporter, ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPVHTRNSSELALSLEDVALGYGDFTVLDGISMQVHAGQVVAVMGGSGSGKTTLLRAATGQIVAQRGSVQAFGTDVGSVS
QDGLQSLRKRMGVLFQQGALFTDLNVFENVAFPLREHTALDEAELTARVLDKLDAVGLRTAAHLRVAEISGGMARRVALA
RAVVLEPELILYDEPFAGLDPISMGITARLIRSLADRLGCATVLITHDVQESFAIADQVYLVGQGRLAAAGTPQQLAASQ
DPYVKQFLNGEPDGPVAFQYPETPAFRAWLAQQEGRKP
>SEQF2266_AEE68875.1 hypothetical protein BPTD_3703 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAHKALNGLGGWVRGQIGGIGYFTRFLGALLARSGIAVRRPGLVSQQVHFIGNYSLLIIAVSGLFVGFVLGLQGYYTLN
RYGSEEALGLLVALSLVRELGPVVTALLFAGRAGTSLTAEIGLMKAGEQLSAMEVMAVDPMRRVLVPRFWGGIIAMPVLA
AVFSMVGILGGWIVGVLMIGVDAGAFWSQMQNGVDVLDDVLNGVIKSLVFGVTVTLVALYEGWQARPTPEGVGRATTRTV
VVGSLAVLGLDFILTALMFGN
>SEQF2266_AEE68876.1 hypothetical protein BPTD_3704 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSREKTDFWVGLFVLLGAAALLFLALRAGNLSTFSFAPTYQLTANFDNIGGLKVRAPVKSAGVVVGRVSRIAFDDKTFQA
VVTFDLETAYRFPTDSSAAILTSGLLGEQYVGLAPGGEEEDFAEGGKIRYTQSAVVLEQLISQFLYGTAEKQGSSAAPET
GAEPKPQQ
>SEQF2266_AEE68877.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTKHSAARIATIAAAGVLLAGCAAPKNPDPRDPWEGFNRGVYKFNDTVDRALFKPVAQAYTFVTPQPVRSCVHNMFSNVG
DLWSATNSFLQGRGHDFVNTIGRFLFNTTMGIGGCFDVASTTGARKIPNDFGVTLGVWGFGQGPYLVLPIWGASSLRDGV
GLIGDWTGNQGATIGAIDNVPLRNSLWGLEAVDLRASLLDTTDTVDRVALDPYSFVRDAYLQRRAAMVRGTKTGDDTLPT
YEDEGDDDAAPAAPAAQPAAQPQ
>SEQF2266_AEE68878.1 hypothetical protein BPTD_3706 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRFSIVSLLHRLFLAGALALAAGAQAAPDPMGPPDKFVLDAATQTIDILKSDQNVKAGNLAHINQVVDAHILPFVNFQKT
TRLAAGRYWRQATDTQKAELAKAFRGTLVRTYSGALTKVDNGTTIKLLPFRGDPNADDVVVRSLISQSNSQPVQVDYRLE
KTPQGWRIYDMNVEGIWLIENYRNQFAQQINQNGIDGLIQALNQRNQ
>SEQF2266_AEE68879.1 putative ABC-2 type transporter protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQSDTSAASRPLVQPRLDAGSGFPTLLRKELLRFWKVSFQTIAAPVITALLYLLVFAHVLEGRLVVYGSVPYTAFLIPG
LMMMSMLQNAFANPSSSLIQSRATGNLVFMLLPPLSHREIFAAYVLAAVVRGMAVGLCVWIVALFFIPLPPQNLAWVLLF
AMLACGIMGVLGLIAGLWSEKFDQLAAFQNFLIMPATFLSGVFYSIHTLPPFWQAVSHWNPIFYTIDGFRYGFFSVSDVS
PWHSLAVVAGVFVVLSLYALRLLGSGYKLRN
>SEQF2266_AEE68880.1 BolA-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSMLPTPEQVRQYIADGLPCEHLDVQGDGSHFDAVIVSAAFEGKRLIARHQLVYAALGDRMKAEIHALSMRTLTPAEYAK
AGS
>SEQF2266_AEE68881.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MDKLRITGGSPLRGEVTVSGAKNAALPILCASLLTAEPLVLGNVPQLNDTSTTLRLLGRMGVRAERAGDGTVTLQADQVD
NLEAPYELVKTMRASILVLGPLLARFGQARVSLPGGCAIGQRPVDQHIKGLAALGAEIEIEHGFVVARATRLKGASIRTD
MVTVTGTENLLMAAVLAEGQTVLENAAREPEVVDLAELLIKMGARIQGHGTDRIVVDGVARLHGARHDVIADRIEAGTFL
CAVGAAGGDITLRGAAPDTMGATLDKLVEAGLTIETGPDWIRGAMHGRPRAVGARTHEYPGFATDMQAQLMALDTVADGT
AVIVENIFENRYMHVQELCRLGADIDIDGHTAVVRGVARLSGATVMATDLRASASLVIAGLAAEGETLVDRIYHLDRGYD
RMEVKLRALGASIQRVTGKETA
>SEQF2266_AEE68882.1 ATP phosphoribosyltransferase catalytic subunit [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPAAAPLTLALSKGRIFEETMPLLAEAGIEVPENPESSRKLILPTSDPGLRLIIVRASDVPTYVQYGAADLGIAGKDVL
IEHAAQQSGRLYQPIDLNIAKCRLCVAVRQDFDYQAAVHQGARLRVATKYVQSAREHFAAKGVHVDIIKLYGSMELAPLV
GLADAIVDLVSTGGTLRANGLAAVEDVMPISSRLIVNQAALKTRGARLQPLIDAFRRASERIA
>SEQF2266_AEE68883.1 histidinol dehydrogenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MALINRLDSRDPGFKTALSQLLAFEAEQDESIDQAAAGILADVRRRGDAALLEYTQRFDRLAVDDATALEIPQADWHAAL
DSLPAAQRQALEAAAARVRAYHERQRGETWTYTEADGTMLGQQITALDRVGLYVPGGKAAYPSSVLMNAIPAKVAGVPEL
IMVTPTPDGVRNPIVLAAAAIAGVDRAFAIGGAQAVGALAYGTATVPAVDKIVGPGNAYVAAAKRRVFGTVGIDMIAGPS
EILVICDGKTPADWIAMDLFSQAEHDELAQSILLCPDAAFLAEVEAAIERLLPGMPRADILRVSLANRGALILVRDLEEA
CAIANDIAPEHLEISTEQPQRWTALIRHAGAIFMGRYSSEALGDYCAGPNHVLPTSRTARFSSPLGVYDFQKRSSLIQVS
REGAQTLGRIAAELALGEGLQAHAASAQYRLDQP
>SEQF2266_AEE68884.1 histidinol-phosphate aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTGVAAPERIARAVRADIRALTAYPVADAAGCIKLDAMECPYELPAEVRDDIARAARETPLNRYPAAANPALQAQVRQAF
EVPAQAGLLFGNGSDELIHLIIQACCEPGDTVLSPWPSFVYFDMAARLSHARFVGVPLTAGLELDLPATLAAIEAHQPKV
VFLALPNNPTGDLWPDAAVRAILDAAPGLVVLDEAYQPFAGHTWMPRIMDEPNAVVMRTVSKIGLAGLRFGYLAGHPAWI
AEFDKVRPPYNMDVLSQAVLAAVLRHKPVLDAQADRLRADRQPLADGLAALPGVTVFPSAGNFVLARFCGKLDGNAVHLA
PKTRKILVRNFSNAHPLLADCLRISVGTPTENAAVLSALQDILSA
>SEQF2266_AEE68885.1 imidazoleglycerol-phosphate dehydratase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNMRTAEITRNTNETRIRVAVNLDGTGKQTIDTGVPFLDHMLDQIARHGLIDLDIKADGDLHIDAHHTVEDVGITLGMA
IAKAVGSKAGLRRYGHAYVPLDEALSRVVIDFSGRPGLEYHIDFTRARIGDFDVDLTREFFQGLVNHALMTLHIDNLRGF
NAHHQCETVFKAFGRALRMALEVDPRMGDAVPSTKGVL
>SEQF2266_AEE68886.1 imidazole glycerol phosphate synthase subunit HisH [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSTIAIVDYGMGNFHSVARALQHAAPDADIRICNRPEQIDAADRVVFPGQGAMPDCMRTLNESGLRAAVERAAASKPLMG
VCVGEQMLFERSEEGGTPCLGIFPGEVRRFAGPQFADPVAADQAAAAPPAAARERLKVPHMGWNQVRQTRSHALWEGIPD
GTHFYFVHSYYAAPSDPALTTGVTDYGVAFTCAVAAANIFAVQFHPEKSAEHGLRLYRNFVDWQP
>SEQF2266_AEE68887.1 imidazole-4-carboxamide isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLLIPAIDLKDGRCVRLRQGDLDDATVFSEDPAAMASHWLDLGARRLHLVDLNGAVAGKPKNEAPIKAILQAVGDDIPVQ
IGGGIRDLDTIERYLDAGISYVIIGTAAVKNPGFLQDACGAFPGQIIVGLDARDGKVATDGWSKLTRHDVLDLAKKFEDY
GCEAIIYTDIGRDGMLSGVNVDATVRLAQHVRIPVFASGGIAGLSDIEALCAVEDDGVEGAILGRSIYEGALDFQAAQAR
ADELAK
>SEQF2266_AEE68888.1 imidazole glycerol phosphate synthase subunit HisF [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNASRIAAAGASTLTRRIIPCLDVTAGRVVKGVNFVNLTDAGDPVEIARRYNEQGADELTFLDITATSDGRDLILPIIEQ
VASQVFIPLTVGGGVRQVSDVQRLLNAGADKISINSAAVANPELVRAAADYHGSQCIVVAIDARRSSAEGEPARWEVFTH
GGRKATGLDAVAWARRMAAYGAGEILLTSMDRDGTKSGFDLELTRAVSDAVPVPVIASGGVGNLQHLADGVTTGRASAVL
AASIFHFGQHTVRECKQYMAERGIAVRLT
>SEQF2266_AEE68889.1 phosphoribosyl-AMP cyclohydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTEPTWMAEVVFDENGLIPAIAQDAETGQILMVAWMSREALAETAATGRAVYWSRSRQRLWRKGEESGHAQDVHELRLD
CDGDVILLKVHQNGGIACHTGRASCFYRRLEGTASQAEWITIDPVLKDPELIYK
>SEQF2266_AEE68890.1 phosphoribosyl-ATP pyrophosphatase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTPTAGDDILSRIADTLATRRPEAGGDPQSSYVAKLLSKAPDAFLKKIGEEATELVMAAKDGQPDRIISETADLWFHCL
VALTHYNLRPEDVLAELARREGLSGLEEKARRPRD
>SEQF2266_AEE68891.1 MttA/Hcf106 family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDNCIFCKIARGEIPAKKVFEDDEFVAFHDINPAAPVHLLLIPRRHVVSLQDIAEGDAGWLGRMTVLASRLAAGNGCNP
GPDGGFRLMANSGAEGGQEVPHLHFHILGGPRPWKGRVAPAA
>SEQF2266_AEE68892.1 twin arginine translocase protein A [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGSFSIWHWLIVLVIIALVFGTKKLRNVGSDLGSAVKGFKEGMKDASADKPADQVTQQRVSDDTIDVQAKEKSNS
>SEQF2266_AEE68893.1 Sec-independent protein translocase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFDVSFTELMVIGVIALVVIGPERLPKVARTIGHLLGRAQRYVNDVKSDIRREIELDELRKFKNEMDETARSMQTSLRET
EDTLRDSTQALRAELDDTARDASKAVNGADAPAEPAPAVASDTDTRSIAPPAAATPADKTPPTGSAT
>SEQF2266_AEE68894.1 putative Sec-independent protein translocase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSQDASNDNPDQQQDSFISHLVELRSRLLKAAGAVVAVFIVLFLYPGASAIYDVLAQPMLASLPEGTRMIATGVITPFMV
PVKVTMMAAFVVALPVVLYQAWAFVAPGLYKHEKRLALPLILSSTLLFIIGMAFCYFFVFRTVFHFIATFAPQSITPAPD
IEAYLSFVMTMFMAFGITFEVPVAVVLLVKTGIVEVAKLRAARGYVVVGAFVIAAVVTPPDVVSQFMLAVPLCLLYEVGL
LCARLVTPRRRGEEESEDDQALTERH
>SEQF2266_AEE68895.1 hypothetical protein BPTD_3725 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNMTRLLAVIGIFIATAGIAAPVSADTYPARPIQMIVPFPPGGSTDVMARVLARTLQDSLGQPVVVQNRAGAGGVIGTDA
TAKSAADGYTLLLSSSSAPLAVGLSLMPSIPYKVLEDLVPVSMVGDVPLVLVTNPKLKLDSLDALIAQCKARPGEVAFAL
NALGSQAHLLTELFQLRTGAAINMIPYKGSGPAVVDLLGGVVAADIENMPAVLEHIRSGNLRALAILSSDRSTHFPAVPT
MAELGYPEFVASPWFAVMAPKGTDPKIIVLLNRHINEALQSKAVVEAFAAQGATPVIATPDQTRGFIADEIQRWAGVVRE
TGAKLK
>SEQF2266_AEE68896.1 toxin subunit 1 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRCTRAIRQTARTGWLTWLAILAVTAPVTSPAWADDPPATVYRYDSRPPEDVFQNGFTAWGNNDNVLDHLTGRSCQVGSS
NSAFVSTSSSRRYTEVYLEHRMQEAVEAERAGRGTGHFIGYIYEVRADNNFYGAASSYFEYVDTYGDNAGRILAGALATY
QSEYLAHRRIPPENIRRVTRVYHNGITGETTTTEYSNARYVSQQTRANPNPYTSRRSVASIVGTLVRMAPVIGACMARQA
ESSEAMAAWSERAGEAMVLVYYESIAYSF
>SEQF2266_AEE68897.1 toxin subunit 2 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIDRKTLCHLLSVLPLALLGSHVARASTPGIVIPPQEQITQHGGPYGRCANKTRALTVAELRGSGDLQEYLRHVTRGWS
IFALYDGTYLGGEYGGVIKDGTPGGAFDLKTTFCIMTTRNTGQPATDHYYSNVTATRLLSSTNSRLCAVFVRSGQPVIGA
CTSPYDGKYWSMYSRLRKMLYLIYVAGISVRVHVSKEEQYYDYEDATFETYALTGISICNPGSSLC
>SEQF2266_AEE68898.1 toxin subunit 4 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLRRFPTRTTAPGQGGARRSRVRALAWLLASGAMTHLSPALADVPYVLVKTNMVVTSVAMKPYEVTPTRMLVCGIAAKLG
AAASSPDAHVPFCFGKDLKRPGSSPMEVMLRAVFMQQRPLRMFLGPKQLTFEGKPALELIRMVECSGKQDCP
>SEQF2266_AEE68899.1 toxin subunit 5 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQRQAGLPLKANPMHTIASILLSVLGIYSPADVAGLPTHLYKNFTVQELALKLKGKNQEFCLTAFMSGRSLVRACLSDAG
HEHDTWFDTMLGFAISAYALKSRIALTVEDSPYPGTPGDLLELQICPLNGYCE
>SEQF2266_AEE68900.1 toxin subunit 3 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLINNKKLLHHILPILVLALLGMRTAQAVAPGIVIPPKALFTQQGGAYGRCPNGTRALTVAELRGNAELQTYLRQITPGW
SIYGLYDGTYLGQAYGGIIKDAPPGAGFIYRETFCITTIYKTGQPAADHYYSKVTATRLLASTNSRLCAVFVRDGQSVIG
ACASPYEGRYRDMYDALRRLLYMIYMSGLAVRVHVSKEEQYYDYEDATFQTYALTGISLCNPAASIC
>SEQF2266_AEE68901.1 toxin transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNPLKDLRASLPRLAFMAACTLLSATLPDLAQAGGGLQRVNHFMASIVVVLRGASVATVTIAIIWAGYKLLFRHADVLDV
VRVVLAGLLIGASAEIARYLLT
>SEQF2266_AEE68902.1 toxin transport protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRDPLFKGCTRPAMLMGVPATPLAVCSGTIALLGIWFSIAFLALFPVALLAMRIMIRRDDQQFRLIWLYLRMRWLSRDRT
HAFWQSTVYAPLRYAERRRRLRKP
>SEQF2266_AEE68903.1 putative secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNRRGGQTAFAAIARNERAIAAFIPYSSHLTDTTLITHGADLVRTWRVQGIAFESAEPELVSQRHEQLNGLWRAISCEQV
ALWIHCIRRKTQAGLDARYENPFCRALDASYNARLNARQAMTNEFYLTLVYRPGHAALGKRAHHGQAEVRRQLLAHVRRM
DEIGSLIETTLRSHGENHEQAITVLGCETDSAGRRYSRTLTLLEFLLTGHWQPVRVPAGPVDAYLGSSRILAGAEMMELR
APTCRRYAQFIDFKEYGTHTEPGMLNALLYEDYEYVITHSFSAVGKRQALAYLQRQRAQLANVQDAAYSQIDDLAHAEDA
LVNGDFVIGEYHFSMMILGADPRQLRRDVSSAMTRIQERGFLATPVTLALDAAFYAQLPANWAYRSRKAMLTSRNFAGLC
SFHNFYGGKRDGNPWGPALSLLSTPSGQPFYFNFHHSGLDEDCRGQMMLGNTRIIGQSGSGKTVLLNFLLCQLQKFRSAD
ADGLTTIFFDKDRGAEICIRALDGQYLRIRDGEPTGFNPLQLPCTDRNVMFLDSLLAMLARAHDSPLTSAQHATLATAVR
TVLRMPASLRRMSTLLQNITQATSEQRELVRRLGRWCRDDGAGGTGMLWWVFDNPNDCLDFSRPGNYGIDGTAFLDNAET
RTPISMYLLHRMNEAMDGRRFVYLMDEAWKWIDDPAFAEFAGDQQLTIRKKNGLGVFSTQMPSSLLGARVAASLVQQCAT
EIYLPNPRADRAEYLDGFKCTETEYQLIRSMAEDSHLFLVKQGRQAVVAQLDLSGMDDELAILSGNARNLRCFEQALALT
RERDPNDWIAVFHRLRREASAGLR
>SEQF2266_AEE68904.1 hypothetical protein BPTD_3734 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAGLSRILLSCTLACLLAGQAAQASVDDPTRAGGDNRVRALRADQARRDVLLTACRDDPGHRRGEPDCVNAERAQALQQW
QAAAMTSVDAAFSDLAGALRNAAPRRMEAAIVRLTRQLQPLVYSMMTLLVLLTGYALLARRDRPFEWHIRHALLVAVVTS
LALSPDRYLSTVVAGVQDVAGWLSGPWTAPDGAAGRGGLAQLDQFAAQAQAWVAQLAGQAANDANPGSAVNWLLCAMIVA
ASAGGWLCLAASLLIVPGLIVTLLLSLGPLFLVLLLFPALQRWTNAWLGALVRALVFMALGTPAVGLLSDVLAGALPAGL
PQRFATDPLRSTMLAATLCATATLMLLTLVPLASSVNAGLRRRLWPNAAHPGLAQAHRQAAARQYAPRPAAAAAAAGPHQ
AGTYAASATPAPAPARPAPSFPAHAYRQYALGGARRPPPRVRRDDRPAPAPDRRVLPRKPNLP
>SEQF2266_AEE68905.1 putative secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIHAHSNARLLRWAILAIAPVTLGACAPNGPPGLPYPDGKPLIPINTAAPEQGSSCQTRAP
>SEQF2266_AEE68906.1 putative secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPDPRPLTPDQTHGRGHAEAAVDWEASRLYRLAQSERRAWTVAWAALAVTALSLIAIATMLPLKTTIPYLIEVEKSSGAA
SVVTQFEPRDFTPDTLMNQYWLTRYVAARERYDWHTIQHDYDYVRLLSAPAVRHDYETSYEAPDAPDRKYGAGTTLAVKI
LSAIDHGKGVGTVRFVRTRRDADGQGAAESSIWVATVAFAYDQPRALTQAQRWLNPLGFAVTSYRVDAEAGQP
>SEQF2266_AEE68907.1 putative secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMAARMMAAGLAATALSAHAFRIPTPGEQDARIQTVPYHPEEVVLVRAWNGYVTRIVFDEQEKIIDVAAGFADGWQFSPE
GNVLYIKAKSFPAQGSPAQAPEPGLWNTNLLVKTDRRLYDFDLVLASADAATPQALQRSRMAYRLQFRYPAAPQAASRAS
PVGPAVPAGALNRRYAMQVGNGSDGIAPIAAYDDGRHTWLTFRPGQPFPAVFAVAPDGTETLVNLHIDNQSLVIHRVAPV
LMLRSGASVIRIVNQNGDASESPAFECHAEPAL
>SEQF2266_AEE68908.1 putative secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLNRPSSPDGGEAHAWPPDPEIPVFANAEHAHRRPLRWMFALVAVALSCLLATGIWRSRAAPPHAATQTVAPAGQALPPG
RIFTVHPREPEPAPLPDMPAAPDPILPQPRPAPPVPPPPIRAPYDYDEPAPRRDSAALKSGPAMMVATAARLGQTERAGM
ADDGVSADAATLIGRNVSRATRSGGRDYRLLPGTFIDCILQTRIVTNVPGLTTCIVSRDVYSASGKRVLVPRGTTVVGEY
RADLAQGSQRIYVAWSRLFMPSGLTIELASPAVDGTGAAGLPGVVDDKFAQRFGGALLLSVLGDATSYMLARATDARHGV
NVNLTAAGTMNSLAASALNNTINIPPTLYKNHGDQIGILVARPLDFSILRGTNE
>SEQF2266_AEE68909.1 putative secretion system protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNDAAPDRQASVDFHLQALHPWLSRQDIAEICVNRPGQLWYEDRNGWNRQESGALTLDHLHALATATARFCDRDICPERP
LLAASLPGGERVQIVVPPACEPGTLSLTIRKPARRIWPLSELLRDTLDLPGVPGASQARPDPLLDPWRRGAWDDFLRLAV
QAGKAILVAGQTGSGKTTLMNALSGEIPPRERIVTIEDVRELRLDPATNHVHLLYGTPTEGRTAAVSATELLRAALRMAP
TRILLAELRGGEAFDFLQACASGHSGGISTCHAASADMALQRLTLMCMQHPNCQMLPYSTLRALVESVIDIVVVVERRAG
QGARRRVVDIWYRDGLPAP
>SEQF2266_AEE68910.1 hypothetical protein BPTD_3740 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNLTLYLLTVLIWGTTWIAIKLQLGVVAIPVSIFYRFALAALIMMAALALLRKLQKLDLRGHLLCLGQGLFLFCLNFLCF
YAATQWIPSGLVSVVFSAATIWNAVNARLWFGTPIAPRVMLGGACGLAGLLLLFWPELASHAAEAGTLKGLGLALLGTLC
FSTGNMLSAAQQRAGIRPLTGNAYSMTYGALILLAGTLAAGVPFAFDPSPTYVGALLFLAVPGSIVGFTAYLTLVGRMGP
ARAAYCTVLFPVVALTISTFVEGYRWTPQALAGLALVMLGNVLVFARWRARTARAA
>SEQF2266_AEE68911.1 AraC family transcription regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLAASDPAGFSVFRTLAGAGTARLERAATLGDGVAAAQWRRAGHEVVDYDHPGHHTLSLYLHGGEKSFRVGNDGYGGAG
KFCVLPSEHRSRWNMNDTVRFLHLYIAPQRLAREAVWRLDCEPRELALRDRTYIQDPALGQACHILLDADWTDPSQRLAA
SAASETVLHHLLVQGTGRRPGMPARGGLAPVVRRRMRDYIEAHLHEPLTLERLAAQAALSTYHFARMFHVSFGVPPHLWV
QARRLARAQALLRAPGQAGLDAVAQASGFGSASHLSRVFRQATAATPGQYRAGARAH
>SEQF2266_AEE68912.1 hypothetical protein BPTD_3742 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPIATSAYEHAYSDRRFWRKLRGHAAGAGRQALEKALWLYFAVQNPATPKWARRVIYGALGYFVLPLDAIPDLAPLVGYT
DDLGVMTAALATVAFAITDDVKAQARGKLDQWLGPAANDAAGNG
>SEQF2266_AEE68913.1 hypothetical protein BPTD_3743 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMPPATGSTHRSAVWLAETVRLREEHWGPLEDADAVRQARQLAPDFTLRILARAQALGRREGLQDLLVHWRQGAALTFVV
LAVAALLAGVGVALGALGSGARPVNVLWALDALLGLHALTFVLWLASFALRPRAAGLGGIWLWATRKLARGPDAALIPQA
LLDLLARAGALRWLLGAVSHILWLAALCAALATLLIVLSTASYRFVWATTLLQPETFVTLTQALGWLPGQLGFALPDAAL
VRASDGAQVLPATAQVQWSIWLLGALVCYGIAPRLLAALYCLAMAARALRGLRLDTSLPGYAVLRDRLLPPAASTGIDRP
ADPLHAPRMIAAQVLPDLANRPVLAALELAPDQPWPPAGLPANVFDAGNLDTREQRSALLDALARSAASRLLIACDARQT
PDRGTLALLAELSDKAAQTRVWLLQAGAAGAGQGRGSLWQARLLDAGLPEAAILRDADHPLRWLEAAHD
>SEQF2266_AEE68914.1 hypothetical protein BPTD_3744 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTEAALRIAVVGHTNTGKTSLLRTLTRNPDFGEVADQPGTTRHVEGARLAIDNAAAIEWFDTPGMEDSIALLEYLERLQA
PGERLDGPARVRRFLESPEAHRRFEQEARVLRKLLECDAGLYVIDARDPVLGKHRDELAILASCARPLLPVLNFVNAPEH
RADQWREAMARLGLHAVLEFDTVAPPLDGEAQLYARLAALLDRHAAMLQRLAQALAQQREQRRQAACVLVADLLVDVAAL
HVSSPGDEAALQEAAATLREQVRRREQACVDALLALYNFHRDDYDGAELPLQGERWGMDLFHPQALKDMGVQLGVGMAAG
AMAGAAVDLLSAGLSLGTGMLIGAAAGGLWQGVERLGKRVAGKLRGYRELSVDDPIVRLLALRQRQLIHALERRGHAART
PVQLQRPDDRAWQSGPLPDGLKEARSRPEWSALGDRYQEDERRKRVVAQLARQLAQAGDA
>SEQF2266_AEE68915.1 putative extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRISPFIKHTALALAIAAAGLSATANAKTFRWSYQGDATSMDPMALNETFTLGFQGNIYETLAGYDGELKLVPLLAESWE
NTEPTKWVFKLRKGVKFHDGSPFTADDVIFSWKRSLTPGSDMKGYGAKASEIRKIDDHTIEVITATPNPILPREWVFLYI
MSKSWSEKNKTTEATNVKGDNQGNYANLHTNGTGPFMVTERQPDVKTVLKRFDGYWDKNIKTNIDEVVFQPISQEATRVA
ALISGEMDLVQPVPVQDWKRLDDAPGVRPLTAPEARAIFIGMDQARDELLFSDVKGKNPFKDARVREAVVLAVDTKAIND
KIMRGAAKPLGSLIATAINGYDDSFGAPIKPDVERAKKLLAEAGYPKGFTVTLDCPNDRYVNDEKVCQAVAGMLARVGIK
INLLAQTKSKYFGKILLQAGNQTSMYMLGWTPSSIDAHNALLNLAACRDAKTAAGQFNLGGYCNKKVDELTAQIGVETDQ
AKRNAMIKEAFEIVRKEYGYLPLHQQPMSWGVKDNIKLIQRADDVLDLRNVVMP
>SEQF2266_AEE68916.1 putative transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAFIARRLFQSLLVMLTVALIAFSMFRYVGDPIASMVGQDTTPQQRAQLRVDLGLDDPFVVQFARFVGNAVQGDFGISY
RQRRPVAELLEERLPATLELSFVSALMALVFGIPMGIYTALRRHGVLSKTFMALSLAGISLPTFLIGILLILVFGVQLRW
LPSFGRGEVISLGWWSTGLLTRSGLAALIMPAITLALFQMTLIMRLVRAEMLEVLRTDFIKFARARGLPERLINFRHALK
NTLVPVITITGLQLGSIIAFAIITETVFQWSGMGLLFIQAISMVDIPVMAAYLVLIAFFFVVINLIVDMLYFAVDPRLRV
QSK
>SEQF2266_AEE68917.1 putative transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIARLAPYFARASDSDLWHSFKRSPGAIISAVVTLIIVLGALAAPLVAPHNPFDLASLNIMDANTPPAWEADGNSAFVLG
TDDQGRDILSAILYGSRVSLLVGFASVLFAMVLGVTLGLISGYAGGRVDSIIMRIADVQLLFPAILVALLIDGVARGLLP
RDMHDKLALYVLIFAIGISGWVQYARTVRGSTLVERNKEYVQAARLIGIGPFTILRRHILPNVMGPVLVIATIHLAIAII
TEAMLSFLGVGVPPTAPSLGTLIRIGNSYLFSGMWWISIFSGIALVALVLSVNLLGDWLRDALNPKLR
>SEQF2266_AEE68918.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLNLHS
>SEQF2266_AEE68919.1 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAVNLQIPSESEILPVAGVEIGVAEAGIRKAGRRDLTVFRLAPGSAVAGVFTRNRFRAAPVQVCEAHLAQGGPIRALVVN
TGNANAGTGAPGLKNAQDTCAALGKLLDVPAEQILPFSTGVILEPLPMDRLTAGLPAAVADLRADGWYGAAHGIMTTDTL
PKIHSRRVNIGGKTVTITGISKGAGMIRPNMATMLGFLATDAGIAQPLLRQLAIELADVSFNRITVDGDTSTNDSFILIA
TGQAGVTVDSAGDAAYAALRDALAAAATDLAQKIVRDAEGATKFMTIRVEEAGNTEEALKVAYAVAHSPLVKTAFFASDP
NLGRILAAIGYAGIDDLDVSRLRLWLGDVLVAVDGGRNPDYQEADGQRVMKQAEILVRIALGRGQVADTVYTCDFSHEYV
TINADYRS
>SEQF2266_AEE68920.1 hypothetical protein BPTD_3751 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTATDLTPLLARAERVLAQLEAWLPPAPPDIDWSAHAYRWRKRGSRGWLDAVRHVARIELDDLQHIERQKDIIDRNTRQF
LESKPANNVLMTGARGTGKSSLVKAMLAAYGDRGLRLIEADKSDLGDLADIVELVAARPERYIVFCDDLSFEEGEAGYKA
LKSVLDGSVAASGDNVLIYATSNRRHLMPEYMSENLAAKHQPDGEIHPGETVEEKISLSERFGLWLSFYPFKQDDYLDIV
YHWLRELNCPADQIEASRTEALQWTLERGSRSGRVAYQFARDWAARHV
>SEQF2266_AEE68921.1 hypothetical protein BPTD_3752 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSEKIVDVAAGLILRPDGQLLLGQRPEGKPWAGWWELPGGKLEPGETVLQALARELHEELGIRVTEAHPWVTYVHVYPHT
TVRLAFCHVTGWEGEPRGLENQRLEWVDPARAHEVGDLLPAALPPLRWLQLPTAYAISAIGAPAALADFTARLRQALDGG
LKLVLLREPDWPGGADAASLRDAMQAILAQCRAAGARLLVSSRHPQAWWREADGVHLTARDAQALKQRPALPEGALVGVS
AHGHAEIVHARDLGADFAVLGPVLATASHPEQAPLGWPGFAAGIRDAGMPVYALGGQSPATLAEARLHGAHGIAGIRGLL
>SEQF2266_AEE68922.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNNHKHARLTRLGRALLVNRVMQQNWTMRQASQAAGVSLRTGYKWLARFRSEGLDGLLDRSSRPHRSPKACAPEQVEHFA
QQRRQRLPLWRIAREAGRSLATVARYMERIGLSRLASLEPPAPVRRYERASPGELLHIDTKRLGRIRGVGHRITGDRAQN
RNRGIGWDAVHLAIDDFSRVSFARILDDEGGDQCAEFLRQATAYYASLGVRIDRVMTDNGSGYVSRTFRAVCVELGIRHI
RTRPYTPKTNGKAERLVQTCLREWAYARPYTSSAERQAALQPFIDRYNWCRPHSALGHQPPITRIPDVNNLLRIDS
>SEQF2266_AEE68923.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68924.1 putative outer membrane efflux protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPGFRFSVPPRRRLAVAALCAALGGCAVGPDYQRPAIDVGAAYKEAAAPQPGWTPAQPSDESARGQWWQVYGDPVLDGLV
QQLNQGNYSVAQAEANYRQAQALVRNARAGFFPTIGAGADVTRSGSGGGSGAGSNGSSVGNQYSLSGSVSWEVDVWGRVR
REVESSRAEAQASAADLAVTRLSAQAALVQNYLQLRVLDEQKRLLDATVLAYERSLRLTQNRYEAGVVGKSDVAVARTQL
ENTRAQSIDLDWQRGQFEHAIAVLMGQAPSRFALPAQPFAQQLPDIPAGLPSQLLERRPDVAAAERRAAAANAQIGVAQA
AWFPDLTLSASGGFRSGQFAEWLTAPARFWTLGPALAMTLFDGGARSARVEQARAAYDAQAAAYRQSVLTALREVEDYLV
QLRVMEHEQQVQRNALESARESLRLARNQYEQGLIDYLSVAVLETTALNTERNAISLLGSRLNASVQLIAALGGGWQGLP
AEAAASAAAEPSAP
>SEQF2266_AEE68925.1 AcrB/AcrD/AcrF family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MILSAPFIVRPVATTLLCLGVVLAGLLAYRLLPVAPLPQVDIPTISVSASLPGASPETMASSVATPLERSLGSIAGVTEM
TSRSSQGSTRITLQFDLSRDVDGAARDVQAAINAARSLLPTSLRSNPTYHKANPSAAPIMTLAMTSATLGQGKLYDLAST
IVAQKLAQVNGVGEVTVGGSSLPAVRVNLIPGALANRGVSLDEVRQALSSANANRPKGMVENDQYHWQVMASDQLDRAEQ
YRPLIVAWRDGAAVRLSDVASVEDSVEDLYQTGFYNDRKAILMIVRRQADANIIETVDAVRAQLPQLAALLPGDVDLTVA
QDRTPSIRASLHEAELTLVIAVGLVVLVVLLFLRRLRAAFIPSVAVPVSLIGTFCVMYLCGYTLNTISLMALIVATGFVV
DDAIVVLENIMRHIERGATPMRAALRGSREVGFTVLSMSLSLVAVFIPILLMGGVAGRLFREFAVTLSASILVSLVVSLT
LTPMMCARLLRAEPAAPRPPGRIGRLWTRLYGGMQGGYERSLGWALAHARLMMLILAATIGLNVYLYMVVPKGFFPQQDT
GQLLGFFRGDQGTSFQATVPKLEYFRKVILADPAVQSVTAYAGGRGGSNSSFMQIQLKPLEERGVSADTVINRLRGRLQN
EPGARMFLVAQQDIHIGGRQSSGSYDYTLMSGDLALLREWMPRVQRAMAALPEITDVDADVEDKGRQIDLVIDRDAATRL
GVSMATISAVLNNSFSQRQVSVIYGPLNQYHVVMGVDPRFAQDIESLKQVHVIAADGQRVPLAAFAQLKVANAPLSVSHQ
GLFVADTISFSLSPGVSLDQATGAIDAAVARIGLPSDQIQAGFQGTAAELQKTLARQPWLILAALVTMYIVLGILYESLV
HPLTILSTLPSAGIGALLALMLLGHEFTLIALIGVFLLIGIVKKNAIMMVDFALEAERRDGLDARAAILRACLTRFRPIM
MTTMAAIFGALPLMLASGPGVEMRRPLGITIVGGLVLSQILTLYTTPVVYLYLDRFRLWAARRRAARSAPDPTRP
>SEQF2266_AEE68926.1 AcrB/AcrD/AcrF family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSPSRLFILRPVATTLSMVAILIAGLIAYRLLPVSALPEVDYPTIQVVTLYPGASPDVMTSLVTSPLERQFGQMPGLNQM
SSTSSGGASVITLQFSLDLSLDVAEQQVQAAINAASNLLPNDLPVPPTYNKVNPADAAVLTLAVTSPTMPLPQVRDLVDT
RMAQRLSQIPGVGLVSVAGGQRPAVRVQVNPQALASAGLSLADLRTAVVGANVNQPKGNLDGPIRSTTINANDQLKSPTD
YNDLIIAYRNDAPLRLSDVARAVQGAEDIRQAAWVGDKPAILLNVQRQPGANVIDVVDCIHALLPQLRAAMPATLDLVVV
ADRTQTIRDSVADVQFEMLLAVGLVVLVTFLFLRSLTATVIPSVVVPLSLIGTFGIMYLAGFSINNLTLMALTIATGFVV
DDAIVMIENIARHLEEGETPLQAALKGAAQIGFTLISLTFSLIAVLIPLLFMTEVVGRLFREFAVTLAVAILISLVVSLT
LTPMMCARLLRPESEQRHGRFHQATGALIDRVIAGYDRMLLVALGTFALTVLLYIVVPKGFFPQQDSGLIQAITQAPQTI
SFAAMSQRQQEAARIIVQDPDVAAVSSFIGVDGSNPTLNNGRMQIALKPQSERSGDLKTVMARLQDALHGGTDLGLTVYM
QPVQDLTIEDRVSRTQYQMTLSNPDLAVLSEWAPRLVERLRQVPQLADVTYDLQDQGLQTWVEIDRDAASRLGITAAVID
EALYDAFGQRLISTVFTQSNQYRVVLEVLPQFRQSPQSLDHIHVPTASGAQVPLSSVARISEGRTVLAVNRLDQFPMTTV
SFNLAPGASLSGAVEAISAVQAEIGLPLAIDTRFQGAALAFQNSLDSTLWLILAAVVTMYIVLGILYESYIHPITILSTL
PSAGVGALLALLISGTDLDMIGIIGIILLIGIVKKNAIMMIDFALEAERKRGLAPREAIHEAALLRFRPILMTTLAALFG
ALPLMLSTGTGAELRQPLGLVMVGGLLVSQVLTLFTTPVIYLMFDRLARRRGGAGAAARQAP
>SEQF2266_AEE68927.1 HlyD family secretion protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPESRSVAPPARQGRRRLIAAAIAVLAVLALAWWLWPKDTGGQQGRPGGRGAMRGGPASMMNMAVPVRVGEARTQDIQIV
LRALGTATAYNTVTVRSRVDGELVKVAFQEGQHVKAGDLLAQVDPRPFEVALAQAQGQQQQNLAQLENARRDLQRYQTLY
KQDSIARQQLDTQAALVRQYEGTIKSDRAAVDSARLQLDFSRITAPIAGRLGLRQVDQGNLISSGDANGLVVITQTQPIA
VVFTLPETQLPEVLAQLRAGRQLPVEAYDRADTRRIASGQLETVDNQIDVATGTVKLKARFDNAEEALFPNQFVNVRLYV
ETRSGMTAIPNAAVQQGSAGAFVFLAQPDDTVSVRQVKLGAINGDWVAVNEGLQPGDKVVVEGMDRLRAGARIEIVTGTT
PEAAAPVNTGAPRRTP
>SEQF2266_AEE68928.1 hypothetical protein BPTD_3759 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MASVILYEYPFNERIRAYLRLEYLFDRLFFFAREGDARLHQIAVSSLFDLLDASERTDIKGAVLQDLERQRMALVGLRDH
PGVAQDALEAMLRDMERVVAALAAQGKTGQALRENEWLVSLRGRLAVPGGATQVDMPSYHAWQNKPESVRCADLQSWLAP
LLPLHEGLSMALRLLRESGRRADIAAEQGGYQQMLAGKIYHLLRVWVDPSLGVFPEISANKYMVWIRFSTQDGEIKPQQV
SRDVAFQMSLCSS
>SEQF2266_AEE68929.1 dephospho-CoA kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MYKIGLTGGIGSGKSRVADMLAEWGASVIDADEISHALTAPGGAAMPAIAREFGPQAVAADGALDRAWMRDLVFREPTAR
GRLEALLHPLIGLHTEQAAAQARGLYLVFVVPLLVESGRWRGRVDRICVVDCDPATQIARVQKRSGLTEPAIRRIMAAQA
ARATRLEAADDVIVNDGATSPDTLRARARTLHDRWLALAGAASQPGGKAAGTPE
>SEQF2266_AEE68930.1 type 4 prepilin-like proteins leader peptide processing enzyme [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQIGARRNNAACGIALPPGPGGPSGPVRAGCPALPLLVLPFRVPPGAMWHVFPLDPALNVVLAALLGLVAGSWLSVVAHR
LPRMMEREWRTAMREEDGGAESGYGLWRPAWHCPSCQAALRGWRAVPLAGWLLQRGRCGHCGQPIGLRYPMLELAAAVLF
AACAWRFGPTPMALAAMGLTGALLALAWIDLEHSLLPDAVTLPLIWAGLLVNLDGALAPLPLAVLGAVAGYLFLWVIFHF
FRLLTGRDGMGHGDFKLMAALGAWLGLGALPWLLLGASLAGVLVGWSLRLAGRVGRGQPLPFGPYLALGGILMLLAAGRP
AWLQFY
>SEQF2266_AEE68931.1 hypothetical protein BPTD_3762 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSAPLDTPALRLNTRFATGIVLAGTLALAGCAQQRSAGYYDPPGASTITDAQYQGQAAGYRTVVHAPSQLQIELKPNQPA
RQQNAQAQAGQQSTEDGTAVPEGQAAPQPQPETASPGAQAIIPQAQTYQGTFPCFAAGLACEAQRVTLTLAPNGRWRSRT
NYLDKQPQASAPVAEQGCWDATQERPPRVLLLDGSGNMRAELVMTANNVLRVRSVGGRTPNLNYNLTRQPDLDAIAELDK
QAAPKCP
>SEQF2266_AEE68932.1 putative regulatory protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLPTPGNASSAQPALPVVSICHPIAPSVGGRAEARPPAALTARERQVAAYLAAGKANKVIAIDLGISRRTAEAHRARIFR
KLGVRNAFELACRMCPHRRAATSMAGQGATPAGES
>SEQF2266_AEE68933.1 pantoate--beta-alanine ligase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKVVHTIQDLRDHLRGQNRVAFVPTMGNLHEGHLALMKLARQHGDPVVTSIFVNRLQFGPNEDFDRYPRTLPDDVAKMER
DRDVYLVFAPDEREMYPEPQNYRVLPPDDLGDILEGEFRPGFFTGVCTVVMKLLACVQPRVAVFGKKDYQQLMVVRNMCR
QLQLPVEILAHETVRADDGLALSSRNRYLSEAERAEAPVLYETLRGIAQRRAGGEQDPAALERVAAQALADRGWKVDYVA
VRRQRDLKAPDVAEMSAGEPLVALAAAKLGATRLIDNLEF
>SEQF2266_AEE68934.1 hypothetical protein BPTD_3765 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAHNASISGDDLAALVEPQVDSTPDVVDSVAFARLYGEPLFQLPTDLYIPPDALEVFLEAFEGPLDLLLYLIRKQNFNVL
DIPMADVTRQYLSYVEQIRVHNLELAAEYLLMAAMLIEIKSRMLLPVKKSDTGEEPEDPRAELVRRLLEYEQMKLAAQKL
DALPQLGRDFVRSQAVAEISVERMLPEVSVDDLRAAWADIMKRARLNQHHHITREQLSVRDHMTHILRRLNDVRFMEFGE
LFLERINEGAPVAVVVVHFIAMLELARESLLDITQAEPYAPIYVRLAYASVAAAA
>SEQF2266_AEE68935.1 hypothetical protein BPTD_3766 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAKNYESEITRFLKEYKTAHPDTEQRQREGRARLWDKAQNTELLEGFRAARVPQKPYVYQAD
>SEQF2266_AEE68936.1 hypothetical protein BPTD_3767 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSADPATAAAPPPLANPDAARAARMIPFIVGCALFMQMLDSTVVATALPAMAAALGSTPVRLNVAITSYLLAVAVFVPIS
GWAADRFGARRVLIAAISLFTLSSVGCALSQNLGQLVVARIVQGMAGAMMVPVGRIILLRTVPKQDLLKAMSFLSIPALL
GPVIGPPVGGFMVTYMSWHWIFLINIPIGILGIALVLRFVSEIREENAPRLDLPGFLLSGICLAALVSAFEALGHGLLPP
LELGALIAAGLLCGVLYVWHSRRVEHPILDLSLLRTPTFAISVLGDNLCRFAVGAVPFLLAMLLQVGFGLSPFAAGMITF
ASAAGALLMKFVATPIVTRYGFRRVLTINAILTGLFIVACAAFTPVTPAWAMIAVLLAGGFFRSLQFTAVNTLTYADIGP
ERMSRASSFAAMAQQLGISLGVGVAAVTLNVSMAARGAASLTIGDVVVGFMVVGALCMLSVLSFRRLAPSAGAQLQNVKV
PRDGK
>SEQF2266_AEE68937.1 glycerol kinase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTANEFILALDQGTTSSRAIVFDRAGTVRGMGQREFRQHYPRPGWVEHDAGEIWQSQLEVAREALRNAGASAADLAALGI
TNQRETTLIWERATGRPLARAIVWQDRRTAAMCEKLLHDGHGRMLQERTGLVVDAYFSGTKLAWLLDHVPGARKMAERGE
LAFGTMDTWLVWQLTGGAVHSTDPSNASRTMLFDLHAQDWSDDILALLNIPRGILPRIAPSSARIGETLPEWLGGSIPIA
GVAGDQQAATFGQACFTPGMAKNTYGTGCFMLMNVGDAPVASRHNLLSTVGWSLPAGNATHATYMVEGGVFMAGAAVQWL
RDGLGIIQRSADIEALAASVADTDDVFMVPAFAGLGAPHWDPYARGTLVGMTRGTTRAHIARATLESIALQSAELLSCMN
ADSGIPLSELRVDGSAARNDLLMQMQADLLGVPVVRPRVPESTALGAAGLAGLAVGFWSSLDEFGAQWQAERTFEPAWPA
DVREARMQRWRQAVELSKGWSRPAAGHA
>SEQF2266_AEE68938.1 hypothetical protein BPTD_3769 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPEGRPGARGPRPSYPMLYSWIKIVHVAAMAAWTLGLLVLSSVTAFPARQGQGPGRFAQRLARCNRWLISPAMLLGVGCG
LYLASMAGWFGQPWLDVKLALVGLLVVLHGAQSLVLRRQLASPAAGAPAWLAAGGAAVFFASAAIVLLAVVKPSL
>SEQF2266_AEE68939.1 hypothetical protein BPTD_3770 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSRSHSFVSVTRRALLGGALAVAAGLSWTAPAVAQGDAFPAKPLRFVVPYPPGGPLDSMARLLAEKVRESLGQPIIVENR
SGAGGNIGADLVAKAAPDGYTLVMGAVATHAINPWLFANLPYDPVKDFAPVTIVASVPNVLVMNLEFAEKNNIQNLGDLL
AYAKKNPGRLNYGSGGNGSAGHLSGELLKARAGIAAEHIPYQGAAPAQLALLSGQSDFMFDNLAAAAPLIKDGKVKALAV
TTAKRSSLLADVPTVEEAGVKGFDLGTWFGVFTTGGTPADVVAKLNKAYADAMRLPDVRQRLLTMGSEAEPMTADAFAAF
VKQEMAKYQEIVKISGASLN
>SEQF2266_AEE68940.1 putative amino acid ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTDAIIRMQDVNKWYGQFHVLRNINLDVAPGERIVVCGPSGSGKSTMIRCINRLEEHQQGHIIVDGTELTNDLKHIEAIR
RDVGMVFQHFNLFPHLTVLENLTLGPTWVLKKSRAEAEATAMKYLERVRIPEQATKYPGQLSGGQQQRVAIARSLCMNPK
IMLFDEPTSALDPEMVKEVLDVMVRLAQESGMTMLCVTHEMGFARKVANRVIFMDRGEIIEQNTPDEFFDNPQNERTKLF
LSQILH
>SEQF2266_AEE68941.1 putative amino acid ABC transporter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSSATHTPGEALPPPSGHVGVWHWLRTRLFSSPLSILATVLLAWLVLMAVPALVEWALIGANFTATSAQECRQSEGACWA
FIVEKHRLILFGTYPYDEQWRPLLATIILIAVIVCSGMRRFWKPSLALVWIVGLSAVAVLMWGGVLGLTYVENARWGGLP
LTLILATFGIALAFPFGVLLALGRRSRMPAIKALCVVYIELIRGVPLISLLFMSSVMLPLFLPEGFSIDKLLRAQIAIIM
FAAAYIAETVRGGLQAIPKGQYEGADSLGLTYWQQMRKVILPQALKIVIPPLVSIFIALFKDTSLVVIIGIFDLTLAAKA
ALSDAAWRGFGVEAYVFIALIYFVFCFSMSKYSQALEHRLATGHQR
>SEQF2266_AEE68942.1 putative amino acid ABC transporter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTTNRNAPIPAPRRRLNWNDPGLRAVVYQFVALVVVALVAWFLVSNTLHNLSVRNIATGFGFLDREAGFAIGETPIAYS
PSDTYGRAILVGVLNTLRVAVIGIVLATLLGTLIGIGRLSKNWLVARLTSIYVEVMRNVPLLLQLFFWYALITENMPGPR
QAHNPLPGVFISNRGVRVPSLEGNALDWMLGGLALAIVAIIVLGHWGRKRQEATGRIFPLGRAAIALLIGLPIVGWLASG
ASLALDMPALKGFNFQGGLNMSPEFAALLAGLVIYTSAFVAEVVRSGIQAVNQGQWEAAGSLGLRRAQVLRLVVLPQALR
VIIPPMTSQYLNLTKNSSLAVAIGYPDIVSVVNTTLNQTGQAIEGILIIMGAYLTVSLTISIFMNWYNKRIALVER
>SEQF2266_AEE68943.1 putative ABC transporter periplasmic amino acid-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKMLKLAAAGAALFAAGSVAHAGATFDNVKKKGFVQCGVSTGIPGFSIADSKGEWKGLDVDMCRAIAATMFGDASKFKVT
PLNTQQRFTALQSGEVDVLTRNTTVTLTRDTTLGLIGVGVNYYDSQGVMVSKELGVKSAKELNGATVCVQPGTTTELNLA
DWFRGNKIEFKPVVIDKYDEIVRAFSAGRCDAFTTDKSQLASTRTTLEKPDNYVILPEDFSKEPLGPMVRQGDEQWFNVV
RWSLNAMLEAEEYGITSKNVDEMAKSSNPNIQRILGVTPGMGKNLGVDDKWAFNIIKQVGNYGESFEATLGKSSAMKLER
GLNASYKQGGLMYGWPVR
>SEQF2266_AEE68944.1 cell division ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIEFQHVFKSYGRGRNILADINFRISAGEFVFVSGPSGAGKSTLLKLIGGLEPPSRGSIQVNNQRLDRLPSRARPYLRRA
VGVILQDTHLLYDRSAFQNVMLPLAVTGQAPDSAAARARAALDKVGLAGKEDLNPIELSGGEQQRLAIARAIVNRPAILI
ADEPTANLDHDNAQRIMNVFRDFNRVGVTTLIASHDQDLMARYATRTLSIEHGRFHDTHGGQA
>SEQF2266_AEE68945.1 putative permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKAWLRQHRYALAITLRRLAAQPFSSLANLLVMALALALPLLGSAILVSVQPLARQVSVTPELTVFMQTQAPATAAGAVA
ERIGRDYASQIAAVRVVPRDQALAALRDNPAWEQALAVLPGNPLPDAVVVTLADGENLAGRAGALAQDWGKWDGVDQVQL
DSAWVQRLEALLRFARIGLAFLAACVAVVVLATVFNTVRMQAMTQREEIAVARLVGATESFVRRPFLYQGALTGAVSALI
AIGAAAMALTPLNDALLGLARSYGAEFALHLPGLPVLAVAVIAAGVLGALSARWSVTRSTRF
>SEQF2266_AEE68946.1 chemoreceptor glutamine deamidase CheD [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPARLDARATRRYFDNAFNSPAVKILPNEYYVTNGEDVMLSTVLGSCVAACIHDPVIGVGGMNHFMLPEGDIHSPASATM
RYGAFAMEVLINELLKAGAVRERLEAKVFGGGAVLSAMQLMNIGERNGQFVLNYLKTEGIPVRAQDLGDVHARRINYFPR
DGRVMVRKMAPHHQKAEALIAQREAAAAQTVQAETRAAPRVERFDTPSRRDPVGA
>SEQF2266_AEE68947.1 putative A/G-specific adenine glycosylase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAPMDFASRITAWQARHGRHDLPWQNTRDPYRIWLSEIMLQQTQVATVIPYYQRFLERFPDVAALAAARQEDVMPYWAGL
GYYARARNLHRCAQEIMQRCVGRFPPRAEEIATLPGIGRSTAAAIAAFAYGERSPIMDGNVKRVFTRHFGIEGDPARRAV
EQQLWALAAAQVQAAPDLDMPGYTQGLMDLGATLCTRGKPACERCPVAQSCIARRDGRQAELPTPKARKAIPERSTAMLV
LHGPDGILLHLRPAPGIWGGLWSLPECDPAHDPGAAARELGLQAEAPVELAAFAHTFTHYRLHVRPWYLAVRGAALRQAA
TPERWVSPAELPATALPAPVRKLLDGLLAALPAPPRQA
>SEQF2266_AEE68948.1 hypothetical protein BPTD_3780 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNSATHLAAHEGSARRRQALGEFVRTARARITPQMAGLPAGSRRRTPGLRREEVAQLSDISVTWYTWIEQGREVTVSPAV
WARIANVLHLARAERAYLFELAECADPQQPRDEGGDAPVSLQACVDAIDAPAYALDRAWNLLASNAAMRELFDDWPLRDA
QPNLLRYIFLDPAARELVVDWDQRARRVVAEFRADAGAHLDEADVVALLDELNRASPVFAHWWTRHAVVEREGGLREFQH
PRSGRQNLQQITFRLATHPELKLVMLLPS
>SEQF2266_AEE68949.1 ubiE/COQ5 methyltransferase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSATPTHDAAVERQFSPRASAYLTSAVHAQGEDLLQMAAIAREHPGARLLDLGTGGGHVSFHVAPHVAEVVAYDLSQSML
DVVAGEAARRGLANLRTCRGKAEALPFGDGEFDLVMSRYSTHHWEDPGQALREACRVLKPGGIAVFADVVSPGEALLDTW
LQTIEVLRDTSHVRDYSAAEWLRMAAEAGLVTQGMTARRLPLEFTSWVERMRTPPELVTALRAMTDIAPAPVRRHFAIQP
DGSFTSDTLTLVAVRPA
>SEQF2266_AEE68950.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDKYNLLTVHS
>SEQF2266_AEE68951.1 CAIB/BAIF family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSADLPLQGITVVELSDNASLPFGGQVLAGLGAEVWKVERPGGDASRGWGPSMWRGSGAAFHALNRGKKSICVDVKDPAQ
LDMLKDLIFSHADVFAHNLRPGSAGQYGLDPETLRARKPELICCELGAFGHVGPLSRDPDYDPLMQAFSGIMSLTGENGQ
PPSRSGVSIVDFGSGMWSVIGVISALYRRRRTGQGATVNASLLETAMAWMSVGIANYATDGEIGSRYDSGIAFIVPHRAY
ETMDGYLIVSCANDRLFGKLSVALDHPEWAVDPRFATNAGRLAHRGEIDGLIGECLARNTREYWKAQLEKFGVASAPIQT
TAEIFEHEQTRALGILGRPTADEIECVGVPISFDGVRPAPLGAAPDVGQFNDEFHALLKSARVS
>SEQF2266_AEE68952.1 hypothetical protein BPTD_3785 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNKNTVPDASGVFAKFATQTRFEDFPAKVIANTKRSIFDTVGVMLAGGGPDAQAHRIAQMLAAWGGAPTGTVIGHDMKLP
APNAAFANAAMAHQYDFDDVHDEAVAHPTNSSFSGTLAAAQEMPGATGRKLLASVLVGNEVVCRVGLAIKGALYDYVWIW
PAVVAIWGATTASARVMGLTADQLQSAYGLTLHQTGTTLQCHHGPGSDVRGFRDGFGARNGVTAAYMARAGLRGDPEAFE
GKYGFYGAFFRGEYDRERLLAGLGQHYAAERISIKAWASARETHATLQALLELRERHGIDPAAIERVVMRVGETNMRFCE
PGAARRRPTVRMDALCALPFCASVALIHGGVPLGAFSENGMRDERVLALAERIAWQADEALSHGTVEGGDVEISLRNGQT
FRHQVRHGMGHPDFPVSDELLVRKFIDCAALATCSVSESQVREFWEMVQKLEDISVAEFSAALRAFSRGN
>SEQF2266_AEE68953.1 putative lipoprotein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MVSRRVLLQAAAAAACMGWKPAFSASWPARSVRLVSPTSVGTTTDTVARFVADGLSKRLKAAFMVEPRPGAGGIIASSEV
ARSRADGYTVLFGAIGHYLAQYLTDNPPVYDPVKDFAPIARVGFASVAIVVRSDSPYKTLADLIEAMRAQPKRITFSSFG
LGSAGHLCGVLLNDATGTRGMHVAYKGTGAAVIDVASGLIDFTCQSAASVLPLIDSGQLRALAVASRSRWPQLPDVPTAI
EAGVPDFVAGSWMGALVRADTPPDIVQRLSDAMVGIARSPEFTALCAKQMIDVEIVDHAQWAADADNENARWQRVAALVK
QG
>SEQF2266_AEE68954.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAPALIVDDSLPGVRRLTLNRPERMNAFDGGLLMDLRRAIDACRDAQPEVRVIVIRGAGRAFCAGNDLKWLAQGVIGDLG
AHLRHQDLMQSTFEALEAAPQAVIACINGYALAGGLELALSCDIVIADESAELGDEHIRRNLLPGGGGSQRLPRKLGLPR
ALLYLLTGRRMTGREAQQMGLVSMAVPAGELESVTMEFASELARVDPHALASMKFAVRRGMELPLKEALWLERWTQYRYR
IASPALENGVAEFGRRPGATLPGDAPNQDERIPE
>SEQF2266_AEE68955.1 nitroreductase family protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLASLQAPPVRTVVADPQSVHAAIESRFCCREFLADPVERETLERILRVASWAPSGSNNQPWKVYVVQGASRAALSQKVR
AAQDALSQDPALADSYREPYQYYPVEWVSPYIERRRACGFGLYGVLNIARGDRVRMNEQLLRNFDFFGAPVGIFFTNDEI
LAEGALVDTAMFVQNVMLAARAEGLHTCVQAAWNRFSSVVLPHIGAQGERLVCALALGHADVDAPVNTFRPDRADPASFT
AWLD
>SEQF2266_AEE68956.1 TetR family transcriptional regulator [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MPMPDTTSSTEHIESQASEKGRSRGQRGEGKASPETRDRLLRAAAHVFRHKGYVAATLAEIGQLADLRPATILYHFASKE
ALLEEVMTVGLGAPQQEVQRRLASAPRDATAADRLRIAIIGHLSALLMHNDFTAAGVINFHLAPPALRKRHHEKRSAYGD
VWRELLRQAKDEGYLAGDVDLTVLRLFMIGGLNWSHEWYDPKGGRSIEAIGSDIARIVLGQTDTPLPA
>SEQF2266_AEE68957.1 putative hydroxymethylglutaryl-CoA lyase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVRLEGEMAYPRFVEFHEEGPREGFQSEKTLYPLASRVALVDALTATGLKKIQVASFVNPRMVPAMADAAELFGAIRKK
SGVRHTALWLNAKGIEKAAATAGVDLDGKMMLYASEAFSWSNNGCSAKDQQQRQLEWLAIYDRLNLPLEAVYVATAFGCQ
MQGEVPLQAVLDIVDFVRDLCAEQSRPLPSIFLGDTVGWGNPEEIKRRVNAVRERAPGMRVGLHLHDTRGMGAANFYAAL
QEGVDLFDSSIGGLGGCPFCNHTNMQAAGNICTEDMVQLCHELGIETGIDLDRLIEASRLAEEIIGRTLSGKVMHSDSLD
AQRAALRQAQAGEPA
>SEQF2266_AEE68958.1 putative enoyl-CoA hydratase/isomerase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSDALLFSVDDGIATLTINRPAQRNAINIEVNSRLYEAWETIDSRPDIRVVILTSADCGTFCAGMDLKEAARVREETGED
VVRSFKDPFQARMRRVKVPIVAAMTGHLMAGGMMLSLNCDLRVGLAGTKAGITESKVGRGSPWGVPLVWMLPQPVLMELM
LTGNLMPIERLRELGFVNDLGETPDAVRAKALALARAIRDNAPLSVACAKQSILAAMSVGCDAGLEMAWRIHRPAYESED
AEEGPRAFAEGRKPVWLGR
>SEQF2266_AEE68959.1 hypothetical protein BPTD_3792 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MFTHLVDFMSISSHRLLEGIRVLDMTVALAGPYASMLLGGLGAEVIRVEAPGGSDLGRSNPPFVGPGGVNFGQQGSDDVS
LTLLNRARNKKSITLNVKDPEGRALFARLLRESDVFIENLSEGASERLGVDYARVREINDRIIYASIKAFGEPSKYQNLK
GMDILVQALSGLMAVTGEASGPPMRCGVPVADLLAPLYMVNGILAALIYRGRTGKGQKIQVSMLDCLSSWVAEEHFDVLA
QAGFRMRTGNNHERLVPFGTYECVDGHIAIAAVHPDWFASLLDAMGRADLQRDPRFADRGTRMRHAADLAALVSEWTRDK
TVAFVEQALVQERGVPAARVRTPLEMLDDPDLHRSGAITDLQTPDGGTVRGMGLLIGFSECHAQFDVPAQALGQTNASVY
ADILGLSDAEIRRLEEKGVI
>SEQF2266_AEE68960.1 transposase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNTHKHARLTFLRRLEMVQQLIAHQVCVPEAARAYGVTAPTVRKWLGRFLAQGQAGLADASSRPTVSPRAIAPAKALAIV
ELRRKRLTQARIAQALGVSASTVSRVLARAGLSHLADLEPAEPVVRYEHQAPGDLLHIDIKKLGRIQRPGHRVTGNRRDT
VEGAGWDFVFVAIDDHARVAFTDIHPDERFPSAVQFLKDAVAYYQRLGVTIQRLLTDNGSAFRSRAFAALCHELGIKHRF
TRPYRPQTNGKAERFIQSALREWAYAHTYQNSQHRADAMKSWLHHYNWHRPHQGIGRAVPISRLNLDEYNLLTVHS
>SEQF2266_AEE68961.1 catalase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MNAMTNKTLTTAAGAPVADNNNTMTAGPRGPALLQDVWFLEKLAHFDRERIPERVVHAKGSGAYGTFTVTHDISRYTRAR
IFAEVGKQTPLFLRFSTVAGERGAADAERDVRGFAIKFYTDEGNWDLVGNNTPVFFIRDPLKFPDFIHTQKRDPKTNLRN
ATAAWDFWSLNPESLHQVTILMSDRGLPQNYRQQHGFGSHTYSFVNDAGERFYVKFHFKSQQGIACYTDGEAAELVGRDR
ESAQRDLFQNIEQGQFPRWTLKVQVMPEAEAATYHINPFDLTKVWPHADYPLIEVGVLELNKNPENYFAEVEQAAFTPAN
VVPGIGFSPDKMLQGRLFSYGDTHRYRLGINHHQIPVNAPRCPFHSFHRDGMGRVDGNGGATLNYEPNSFGEWREAKHAA
EPPLALDGQAADRWNHRVDEDYYSQPGALFRLMNDDQKQQLFGNIGRHMAGVPEEIQRRQLEHFRRADPAYAAGVAKALG
LK
>SEQF2266_AEE68962.1 ABC transporter permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTNATLPLAIARPEYEQSLAPLPADIAIQAPLPWHERLLGHAWLRKVLILLLLALAWEAMARYTDNDLLLPGAWQTARAF
FQELGSGQLPARAALSFSVLFKGYAAGVALAFVLTTLAVSTRFGRDLLSTLTAMFNPLPAIALLPLAMLWFGLGQGSLVF
VLIHSVLWAMAVNMYSGFLTVSETLRMAGRNYGLTGLRYVLGILVPAALPSILSGLRIAWAFAWRTLIAAELVFGASSGK
GGLGWYIFQNRNELYTDRVFAGLAAVVLIGLAVENLVFDTLERVTVRRWGMQR
>SEQF2266_AEE68963.1 ABC transporter ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MGAHRFDSSAEPLLRADGVTLEYKTPRRRVRATHRVSFDMLPADRFILLGPSGCGKSTLLKAAAGFLAPSEGQFLLDGRP
IDAPGPDRVVVFQEFDQLPPWKTVRENVAFGLVAARRLPRAQALERATHYLEKVGLGAFADAYPHTLSGGMKQRVAIARA
LAMQPRILLMDEPFAALDALTRRRMQEELLGLWEDASFTLLFVTHSIEEALVLGNRILLLSPHPGRVRAELNAQQFGLHS
MGSAAFQAAAARIHGLLFDVEPQAVPQRAAA
>SEQF2266_AEE68964.1 putative periplasmic protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRSHETVRQRLARYVSASLLGAFIAVLALASPTPALAEGRIRIAEQYGIVYLLLNVARDQQLIEKHGRQAGVDIDVQWTR
LSGGAAVNDALLSGAIDIAGAGVGPLLTIWDRTLGRQNVRGVASLGNFPYYLVSNNPRVKTIADFTDKDRIALPAVGVSV
QARVLQLASAKLWDDEHYNRLDAISVALPHPDAAAAIISGGTEITGHFGNPPFQEQELAGNANARIVLKSYDVLGGPGSS
TVLFATEKFRRENPKTYAAFQVALQEAAQFASAHPEQAADIYIRLAGAKIDRDFLIRIISNPEVQFKVAPQNTYALAAFM
HKVGAIKNKPQSWRDYFFDDAATAQGS
>SEQF2266_AEE68965.1 putative taurine catabolism dioxygenase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSHANALRQPSIAFPPDVLAHGPSQDFTVRPLNDALGAEIVGIDLARALSAADFARVRRAHLDHHLVVFRDQRITPRQHI
DFSRRFGRLMIHVLHQFHLAHNPEILVVSNIVENGAPVGLGDAGKYWHSDISYKPLPSLGSLLHAQELPAIGGDTLFANM
HRAYETLPRALREAVDGRRAVHSYLAKYGQLQKEGNWRPTLSAAQLAQVQEVAHPVVRTHPETGRRALFVSEGFTTRIEG
VAADESRQILDELFAHSTRSEHIYRHQWRDHDLVFWDNRSLIHLAAGCPPELRRKLYRTTIEGDAPF
>SEQF2266_AEE68966.1 putative hydrolase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MKTIEAIERAHADLTALRRDIHAHPELAFNETRTSALVAEKLREWGLEVHTGLGKTGVVGVLRAGSGGKRIGLRADMDAL
PMPEHNRFAHRSTIEGRMHGCGHDGHTAMLLGAAQYLAAHRDFDGTVHFIFQPAEEGGNAGARAMMEDGLFDRFPCDAVF
GMHNMPGMPANTFGFRAGPAMASSNRWDIVINGVGGHAAQPHRSIDPIVIAAEMVQSLQTVISRSKDPLDSAVLSITQIH
AGDAYNVIPGSAVLRGTVRTYTVAALDRIEEDMRRIATTLPQVYGATGDLDFVRAYPPLVNWEAETAFAAQVAEQSFGSG
QVDRDIPPFMGAEDFSFFLEKVPGCYLFLGNGDGDHRLETYHGMGPCQLHNSNYDFNDALLPVGASYWVKLVQAYLPSA
>SEQF2266_AEE68967.1 putative transport ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MMDAPVLALRNLEMRFVQSVDLAGRIANLFGAGLRTQVVHAVADVDLDVAPGEVLGIVGESGCGKSTLGRIAAGILRPSG
GTIAWRGAPVAQMGASQRRAYELGVQMIFQDPYASLNPRMRVRDIIGEAPVAHGMVLSRDKAEYVAGLMRQVGLDPAYAQ
RYPHQFLGGQRQRIGIARALALKPAVIVCDEAVAALDVSIQAQVINLFAQLRQDLGLTYLFISHNLSVVSHISDRVAIMY
LGRVVELAPTIQVFEHANHPYTQALLAELPTLRVQRRQYRPIKGELPSPLAPPPGCAFHPRCPHAMPRCSVERPLLREIA
PGHTSACHLNDIAAAQQA
>SEQF2266_AEE68968.1 putative transport system ATP-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MQASLSSPPESATRPVLEVKGLKTQFATRAGVVKAVDGVDMYLRHGEILGLVGESGSGKSITGFSLIGLLDEPGRVVEGE
IRFDGEGLRQAAPARWRALRGDAMAMIFQDPMMTLNPVLRVDTQMVETVLAHRRVSRGEAYQRALQVLTMVGIPAPRERL
RAYPHQLSGGMRQRVAIAIALLNSPRLIIADEPTTALDVTIQGQILYEMRKLCEETGTALIWITHDLAVVAGLADRVAVM
YAGRIVETGSAADVIEHAMHPYTHGLIASIPTPDTRGKPLDQIPGMTPSLLNLPAGCAFRTRCPRASQACLQAPEPVEVR
PAHWVRCWHAGEA
>SEQF2266_AEE68969.1 putative transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTVPVQLSPVPAPVGEEAPLRRFLRDFCASKLALLGLALLLVVVGAAVFAPWIAPQNPYDIGGLDILDSKLPPGSEAGDG
SMRYWLGTDGLARDVLSAIIYGMRTSLIVGTVSVLAAFAIGATVGLIAAYFGGRIDALLMRIVDIQLSFPAILVALILLA
ILGKGVDKVIIALVVVQWAYFARAARGAALVERGKEYVEAARCLSLGWGRVLLRHVLPNCMPPLIVIATIDLAHAIALEA
TLSFLGVGVPVTEPSLGMLIANGFEYLLSGHYWISFFPGIALAIAIIAINLVGDHLRDVLNPRNAG
>SEQF2266_AEE68970.1 putative transport system permease protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLATIIRRLLQTVVVMLVMSALVFAGIYMVGDPVSMLASPEATEAQRTAIRVSLGLNQPLWKQYLIFMGQAVRGDFGNSF
LTGEPAMRLILERMLATLELACVAMLLSVLIGVPLGIRAGLKPKAPASRVIMTGSVLGFSLPNFWVGLMLIMIFAVTLGW
LPASGRGQTVSVAGLSLSVLTLDGWASLILPAATIALAKCAMIIRVTRAATRESLPQDYIKFARAKGLPEKRVLGVHLLK
NILIPIVTVAGLEFGQVVEFAVVTETVFSWPGMGKLLIDSIINLDRPVVVAYLLLIVFFLVMLNLVVNIIYTVLDPRVRL
DSRQ
>SEQF2266_AEE68971.1 putative extracellular solute-binding protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MISRLSRVVTCGSVIVALALGGASAALARDLVVALKTEPSSMDPQYHALTPNTQISQTIFDPIVRVDEQLKPQPALAESW
TVDGKVWTFKLRPDVKFSDGTPFTAEDVVFTYDRIPKVPNSPSPFTLYLGAVAKTEAVDPLTVRITTKDVTPLLLVNLAQ
LPIMSKKAASGPAPEGKTTTELNSGNGLIGTGPYKFVSWKRGAEFVLARNENYWGKPPAWDKVTYRPMTNAAARVAALLA
GDVDMIEDPPTDDLPKLKADKKLYVEETPSVRVVYLALDQYAEPSPGVQGTDKNPMKDKRVREALSLALNRDAIVDRVMG
GVAKPAGNLLPYPMFGSSKEHSQAPKADVEKAKALLKEAGYPNGFSITLGSPSGRYVNDAKVAQAIASMWTRIGVKTSVD
SMAPPVFFKNRDSYAFSAYLAGWSVTSGEMSNALTSLLVTRNPEAGLGTTNRSRYSNPAMDELVKQASSTMDDAKRAELL
QKASNLAMDDYAMLPVHFELSVWAMKNDIRYTGRPDQTTLVQYATVKK
>SEQF2266_AEE68972.1 tRNA modification GTPase TrmE [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSLYAPIAAIATAPGRGGIGVVRISGPDLAELAQRLFGRPLTPRHAHYLPFRAADGEVIDEGLAIYFRAPHSYTGEDVLE
LQGHGGPAVLRRILARCLQAGHDLGLRPAEPGEFTRRAFLNERLDLAQAEAVADLIDASSEAAARGAMASLSGEFSQRVN
DLSDRIIHLRMLVEATLDFPEEEIDFLEKYQARPTLQALTHDLDTLIAQARQGVILREGLHVVLAGKPNVGKSSLLNALA
GDDIAIVTPIAGTTRDKVVQEIHIDGVPLHIVDTAGLRDTDDAVESIGIERTWKEIERADLILHLQDVTQPPDHLDAQIV
RRLPARTPVLNVFNKVDLLDAAFQGQPDSLAISARGGIGLDALRQHLLQLAGWNPGAESPWLARERHLHALQQAAQHLEI
ATEHAREDDRVLDLFAEELRLAHEALTGITGKFTSDDLLGEIFSSFCIGK
>SEQF2266_AEE68973.1 hypothetical protein BPTD_3807 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MLAASFVMAIYGWGMGFYGPPVFLHAVVERTGWPLQWVAGMVTLHFVEGALAVANLRRLYRLAGIPMVTFCGALGSALGT
FGWAVAATPWQLAIAALVSGASWAALGAAAINALIEPWFVVRRPAALGMAYNGASVGGIVFSPLWALLIQAWGFAWAAGV
VGASMVLVIAVLASLVFTRTPANTGQAPDGEAVAPRPAANPAPPARPAGRLREDRRFVTLAAAMSLGLFAQMGLVAHLYS
LLVPTLGPGTAGLAMGAATGCAIAGRTIVGRIAGAGSDRRLLASHAYAIQALGALLLLAAGDTPALVWLGLLLFGSGIGN
ATSLPPLIAQNEFDPASVRRVVPLIVALSQAAYAFAPAVFGMLRGVSDAASAPWLFVAAAALQAAAIACLLAGRATCRCR
NSKRSRPASRRW
>SEQF2266_AEE68974.1 putative response regulator protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRILLIEDEAELARWLSRSLARHAGFVVEWADDGLLAERRLAVEEFDAIILDLGLPGMDGHTLLTRIRARDDRTPVLVLT
ARDSLAERVGTLHQGADDFLPKPFVLEELEARLTALIRRSRGREHPRLTLGDLALDTALQRFTVKGQPLALSPREHAVLR
ALIQRSGEPLNKQQILDRIQSSDSDVNLEAIEVLVHRLRKKLADTGVQIVTMRGMGYCLENAVDNP
>SEQF2266_AEE68975.1 putative sensor kinase protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MTTRRQEKTRHRTLKTVLLWWLIPALVFVMTGALWLSNQQLRNQVDIAYDRSLSGALRSIDHNISTASGGLSLEQPYLML
EFFELTANGNVYYRVATEDGLAEIGNPQLPLPPQPLVSGQPQFFYAEYLGQPVRVAALARPMDPPLYNDKGGRIIVQVAE
SLETRQDFLHRALVRSVERDLAVVMISVLVVIWSVFMALRPLERLREEVASRSADDLSPVSASEMPGEVQPLIHAVNLHM
ARFTALARVQRQFLDDASHQLRTPLSVLRTQTAYALRETDPQEVRTALLAMQDGLDRAVRTTNQMLALARAKDASLAEGG
LPLETVDLAELADGVIRALLPAARARQLDLGLDVQAAPVRVQAVEWLLREALSNLVDNAIRYTARGSEVTVKVHAEGGHA
WLVVEDNGPGMSAEDIARASVRFRRGAAGKNKSGAGLGLAIVRTIIEIHGGQLVLENRQPQPGLRAALVFSLGFKGNAAL
PHEIVVI
>SEQF2266_AEE68976.1 hypothetical protein BPTD_3810 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MHTLAKFRATAAALAGLCALFIGNAAHAAGDEPRRPECIAPAQPGGGFDLTCRLATEGLKQSGALKAPMRIVYMPGGIGA
VAYNNIVAQHPGEAGTIVAFSGGSLLNLAQGKFGKYSVDDVRWLAGIGADYGVAVIRNDSPYTDLKGLMEAFKQDPTKIV
LGAGGTVGSQDWMKAALTAKAAGVDFKKMRFVAFEGGGEAVTALRGGYIQAYMGDAAEAFTMLEGGAPIRVLAVFNSERL
PGKLNNVPTAKEQGYDIVWPIIRGFYVGPKVSDKDYQFWVDAFDKTMTSPEYAKLREQQGLFPFSKTGKDLDDYVKQQVK
NYAELADSFGLIKK
>SEQF2266_AEE68977.1 hypothetical protein BPTD_3811 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MRTQSGRSAPCSRIGYGIMNDRMLGVFALILAAFMTWAGWDIEAPFAYEPVGPRAFPMLVALIIGLCGLRLVYKGSHQVE
TNSAGANARIALMIAYAAAYAFLFQWLGFVIATALMTVAVGRLFGGNWIKCAIGGLIMGVLFFLLFDKVLDVVLPAGLLE
GLL
>SEQF2266_AEE68978.1 hypothetical protein BPTD_3812 [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MSGILDHLAIGFGVAFSLTNVLVAAIGSFFGTMVGVLPGLGPINGVAMLIPIAFAMNLPPEMALILLAAVYVGAEYGGRI
TSILLNVPGEASAIMTTLDGYPLARQGLANVALSLSAWSAFFGAIVSVTGIILLAPLLAKWALAFGPAEYFVLMVFAFCC
LTSLLGKQPVKGVLAAMIGLGISVVGVDSNSGVYRYTFDSVHLSDGIDFVVVVIALFAVSEMLEMLEKVVAGHSIEVKPS
GRKLFNLKELSFTWWSVVRSSLVGFGVGVLPGAGASVAAAVAYSQEKRIIESKDPDAKFGKGDMRGLVAPESAATASAIG
SFVPMLTLGVPGSGTTAVMMGALTLYNITPGPVLFDSKPELVWGLIASLFIANVLLFIMNVPMVRVFSKVLAVPAWMMVP
GILCISYIGVYAINAGTFDLLMVVAIGALGYFLRKFGVPMAPLVLGVVLGDMMEQNLRRALSITNGDPVVLYSSPVSIGL
WIAAAAVVIVPQLMRRLSARRRQAAQS
>SEQF2266_AEE68979.1 putative aminotransferase [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MIRSKLPDVGTTIFTVMSRLAIEHKAINLGQGFPDFDPDPELCVLVGKAMAAGHNQYPYMPGVAPLREAIAAKVKTLYGH
AYDPETEITVTSGATEALMATVLAAVGPGDEVVVIEPCYDSYLPAIRLAGGTAVPVPLRAPTRDDPYYRIDWQRVRDAIG
ARTRLLMLNFPHNPTGAVLDESDLDALESIVRETGVLLLSDEVYEHIVFDGKPHASLSRRPLLAEHAFVISSFGKTYHTT
GWKVGYCCAPRQLSAELRKVHQFMVFTVSSPMQFALAEYMANPKPYLDLPAFYQAKRDRLAAGLANTRFRPLPSPGTFFM
LADYSEITKHAEADFARHLTIDHGVTVIPVSAFYQNPAAPESNHHLVRFCFAKQDATLDAAIERLAHV
>SEQF2266_AEE68980.1 putative cold shock-like protein [Bordetella pertussis CS] [HMT-828 Bordetella pertussis CS] 
MAQKGKVKWFNADKGYGFITPDSGGTDVFAHFSAIQGRGYRSLNEGQEVEFEVKDVPKGPQAAEIRPL
