CRISPRs found in the submitted sequence(s)

Sequence: Ando

Sequence description :
Length (bp): 2229994

Number of CRISPRs candidates = 8
Confirmed CRISPRs = 3	Questionable CRISPRs = 5
Ando_Crispr_1 Ando_Crispr_3 Ando_Crispr_8	Ando_PossibleCrispr_2 Ando_PossibleCrispr_4 Ando_PossibleCrispr_5 Ando_PossibleCrispr_6 Ando_PossibleCrispr_7
CRISPRs candidates localization

Rebuild a CRISPR, modify the DR sequence

Confirmed CRISPRs (3)

CRISPR id : tmp_1_Crispr_1

CRISPR start position : 385233 ---------- CRISPR end position : 386431 ---------- CRISPR length : 1198
DR consensus : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC
DR length : 47 Number of spacers : 14

385233	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGCT	ATCCCTAATCTTCATATTATTATCCATTA	385308
385309	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGCA	TCAAAAATATTTTCAGTTTCAAAACTCTACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGCTATATCAGAAATAGCTTAAACAAGTCTTTT	385460
385461	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGGCAACGCACAG	CAGTGATATGACATGACCTTGCTTGCGTATT	385538
385539	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	GGCGATGGCGGATTTTGTAGACCTTTCGAT	385615
385616	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	CGGGGTGAGGCAGGTCTAAATAGTAATGC	385691
385692	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	GGTAACCAAGGATGTCGCCCCGCTCCTTGG	385768
385769	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	CAAAAGAGCATGCAGGGATACACGCTTCTG	385845
385846	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	GACACACGCGTACACCGTCGCCAGACGCAT	385922
385923	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	CAAATCCGTAGCCATCAAGGGCTACATGGT	385999
386000	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	ACTCATAGAATTTGGAAACCATATCCCTTG	386076
386077	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	ATGAGCTATTTTCTCTATTTAGACAACCTT	386153
386154	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	TCTCAAGTAATCATTCAGTTTCTCTATAGA	386230
386231	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	TCCAATACACCTCTGCGACCCTTGAGTCTC	386307
386308	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC	GCTTTGGATCTGCCTTGATCTTGTCAATGG	386384
386385	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGGCAACGCACAGC		386431

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_3

CRISPR start position : 970698 ---------- CRISPR end position : 970941 ---------- CRISPR length : 243
DR consensus : ATAGTATCCTCTCATGTGAGACCATAGTATCCTCTC
DR length : 36 Number of spacers : 3

970698	ATAGCATCTTCCATCAATAGACCATAGTATCCTCCC	ATGTGAGACCATAGTATCCTCTCATATGAGACT	970766
970767	ATAGTATCCTCTCATGTGAGACCATAGTATCCTCTC	GTATGAGACCATAGTATCCTCTCGTATGAGACC	970835
970836	ATAGTATCCTCTCATATGAGACCATAGTATCCTCTC	ATGTGAGACCATAGTATCCTCTCATGTGAGACC	970904
970905	ATAGTATCCTCTCATATGAGACTATAGTATCCTCTC		970941

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_8

CRISPR start position : 2130414 ---------- CRISPR end position : 2131437 ---------- CRISPR length : 1023
DR consensus : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC
DR length : 36 Number of spacers : 15

2130414	GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC	TAGACTTTTAACTTCTACAAAAATAATTAA	2130479
2130480	GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC	AAGTCCTTAACGGATTTACTTCCGTATAG	2130544
2130545	GTTGTGTGTACCCTTCAAATAGAGGGTAGATCCAAC	AAGGTCTCCAAAGCACCGCTACCGCGCGGA	2130610
2130611	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CAAATTCCTCAAAAAGCAGAAAGTGGTCTG	2130676
2130677	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	ACTAATTTTTGAAGGTGCGACCGTTAAAGA	2130742
2130743	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	AAAATAGCCAGTTTCTATGATAGATTCTCT	2130808
2130809	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CATGATAAAAGTCTTAATTACATAGAATCA	2130874
2130875	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CATCAGTTACATCTCTAAATATGGTGCTTT	2130940
2130941	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	TATTCCGAATTTTTCTCTTTTGATGTCCGC	2131006
2131007	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	AAAAAGGCAACAAAAAGTTGCTGATCTCGG	2131072
2131073	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	TTATTCTATCATTATTATAAAAGCTCTTTA	2131138
2131139	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	TCCGATGAGATGTTGACTAAGCTTACTCTT	2131204
2131205	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CAATTGAGAAAAGCATAGAGACCTCTTTGC	2131270
2131271	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	AAAAAGGCAACAAAAAGTTGCTGATCTCGG	2131336
2131337	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	GGTAGGCTCAATAGAGGACTATGTAGACA	2131401
2131402	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC		2131437

Display spacers	Crispr Properties

Questionable [*] CRISPRs ( 5 )

CRISPR id : tmp_1_PossibleCrispr_2

CRISPR start position : 892926 ---------- CRISPR end position : 893022 ---------- CRISPR length : 96
DR consensus : TTGCTTACAATTCTATTCTTCTCATCGTGGTG
DR length : 32 Number of spacers : 1

892926	TTGCTTACAATTCTATTCTTCTCATCGTGGTG	AAAAAGCAGATCAGACACCGAGATCGTGGAGGA	892990
892991	TTGCTTACAATTCTATTCTTCTCATCGTGGTG		893022

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_4

CRISPR start position : 971082 ---------- CRISPR end position : 971186 ---------- CRISPR length : 104
DR consensus : ATAGTATCCTCTCATGTGAGACCATAGTATCCTCTC
DR length : 36 Number of spacers : 1

971082	ATAGTATCCTCTCATAGGAGACCATAGTATCCTCTC	ATGTGAGACCATAGTATCCTCTCGTGTGAGACC	971150
971151	ATAGTATCCTCTCGTGTGAGACCATAGTATCCTCTC		971186

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_5

CRISPR start position : 1552548 ---------- CRISPR end position : 1552680 ---------- CRISPR length : 132
DR consensus : GGGGTTATACTATAAAGGGTAGAGACTTTTAAGTATAAAGT
DR length : 41 Number of spacers : 1

1552548	GAGGTAATACTATAAAGCCCTGAGGGGTTATACTATAAAGG	GTAGAGACTTTTAAGTATAAAGTATGGAGGCTTGATACTATAAAGTCATGG	1552639
1552640	GGGGTTATACTATAAAGGGTAGAGGCTTTTAAGTATAAAGT		1552680

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_6

CRISPR start position : 1848141 ---------- CRISPR end position : 1848249 ---------- CRISPR length : 108
DR consensus : AGGAAGCCGTTGTCACGTGACAATCAC
DR length : 27 Number of spacers : 1

1848141	AGGAAGCCGTTGTCACGTGACAATCAC	TCCGTGCATGATGCAGGAAGCCGTTGTCACGTGACAATCACTCCGTGCACGATGC	1848222
1848223	AGGAAGCCGTCGTCACGTGACAATCAC		1848249

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_7

CRISPR start position : 1986799 ---------- CRISPR end position : 1986906 ---------- CRISPR length : 107
DR consensus : GAAGCGATTTCGGCGAAAAAATTCCT
DR length : 26 Number of spacers : 1

1986799	GAAGCGATTTCGGCGAAAAAATTCCT	TGCTGCAGCTTGCAGGAAGCTACTTTGGCGAAAAAATTCCTATTTGCAGCTTGCAA	1986880
1986881	GAAGCGATTTCGGCAAAAAAATTCCT		1986906

Display spacers	Crispr Properties

[*]There are two kinds of "questionable" CRISPRs:

Small CRISPRs, i.e structures having only two or three DRs
Structures where the repeated motifs (DR in CRISPR) are not 100% identical.