CRISPRs found in the submitted sequence(s)

Sequence: F0566

Sequence description :
Length (bp): 2306092

Number of CRISPRs candidates = 12
Confirmed CRISPRs = 7	Questionable CRISPRs = 5
F0566_Crispr_2 F0566_Crispr_3 F0566_Crispr_7 F0566_Crispr_8 F0566_Crispr_9 F0566_Crispr_10 F0566_Crispr_11	F0566_PossibleCrispr_1 F0566_PossibleCrispr_4 F0566_PossibleCrispr_5 F0566_PossibleCrispr_6 F0566_PossibleCrispr_12
CRISPRs candidates localization

Rebuild a CRISPR, modify the DR sequence

Confirmed CRISPRs (7)

CRISPR id : tmp_1_Crispr_2

CRISPR start position : 410334 ---------- CRISPR end position : 410629 ---------- CRISPR length : 295
DR consensus : TGTGTACCCTTCGAATAGAGGGTAGATCCAAC
DR length : 32 Number of spacers : 4

410334	TGTGTACCCTTCGAATAGAGGGTAGATCCAAC	GTCTGTACTGATATACCCTCGAGCAAGGAGTTG	410398
410399	TGTGTACCCTTCGAATAGAGGGTAGATCCAAC	GAAGCTGGCATAAATAATTCACAAAAAAAAGTTG	410464
410465	TGTGTACCCTTCGAATAGAGGGTAGATCCAAC	AGGAACTAAATCTTTTCCACTACAAACAGTGTTG	410530
410531	TGTGTACCCTTCGAATAGAGGGTAGATCCAAC	AGTCGCGTTTGTCGGCTGTGATTTTGCCCGGTTG	410596
410597	TGTGTACCCTTCGAATAGAGGGTAGATCCNNN		410629

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_3

CRISPR start position : 410726 ---------- CRISPR end position : 410955 ---------- CRISPR length : 229
DR consensus : TGTGTACCCTTCGAATAGAGGGTAGATCCAAC
DR length : 32 Number of spacers : 3

410726	TGTGTACCCTTCGAATAGAGGGTAGATCCAAC	GCTATTGAAAAACAAATTTGGATCGATATGGTTG	410791
410792	TGTGTACCCTTCGAATAGAGGGTAGATCCAAC	TGGAGTCCGGCTTGGAGTCCGCTCATCAGCGTTG	410857
410858	TGTGTACCCTTCGAATAGAGGGTAGATCCAAC	GAGGATGCAGAAGAAAAGGGTATCGAGTTCGTTG	410923
410924	TGTGTACCCTTCGAATAGAGGGTAGATCCAAC		410955

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_7

CRISPR start position : 2166413 ---------- CRISPR end position : 2167103 ---------- CRISPR length : 690
DR consensus : ATTTCAATTGCACCATACAGGAATTAAAAC
DR length : 30 Number of spacers : 10

2166413	ATTTCAATTGCACCATACAGGAATTAAAAC	TATAGAAACCTTCATCCACAGAGGTGAATCCCTCTA	2166478
2166479	ATTTCAATTGCACCATACAGGAATTAAAAC	TGATGTCGAATTCGATCCCCTGCGCGGCGGCATCTT	2166544
2166545	ATTTCAATTGCACCATACAGGAATTAAAAC	GATGATTACTTCTCTACAGAAAAGAAAGCATACGAA	2166610
2166611	ATTTCAATTGCACCATACAGGAATTAAAAC	AGCTGATGATGGACAGGGAGATCACGATTACTCGTG	2166676
2166677	ATTTCAATTGCACCATACAGGAATTAAAAC	ATGGAGAGCTTCGCAGTAAGCTCATTTCCATTCAGC	2166742
2166743	ATTTCAATTGCACCATACAGGAATTAAAAC	GCAGCATGCTCAGCTCCTTCGGACGTACGAAACAGTA	2166809
2166810	ATTTCAATTGCACCATACAGGAATTAAAAC	CCCGCCAGGCGGCCGCCTGGCGAAACTTGCAGAT	2166873
2166874	ATTTCAATTGCACCATACAGGAATTAAAAC	TAGTAATCTTATCGTTGTTGTCTGTCATCTCGAGCA	2166939
2166940	ATTTCAATTGCACCATACAGGAATTAAAAC	GAGTCGGGGAATATCAATTTTTACGCCGATTCTAAA	2167005
2167006	ATTTCAATTGCACCATACAGGAATTAAAAC	TGTTAGCGGTTGTTTTGCTAAACAGGTCGATAAGGGC	2167072
2167073	ATTTCAATTGCACCATACAGGAATTAAANN		2167103

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_8

CRISPR start position : 2167205 ---------- CRISPR end position : 2168411 ---------- CRISPR length : 1206
DR consensus : ATTTCAATTGCACCATACAGGAATTAAAAC
DR length : 30 Number of spacers : 18

2167205	ATTTCAATTGCACCATACAGGAATTAAAAC	ACCCTGTAGTGCTCTACGGCCACGACCTGTCCCTG	2167269
2167270	ATTTCAATTGCACCATACAGGAATTAAAAC	TGACAGGCATCGTGAAAGCTTCAAGGTTCGATGTG	2167334
2167335	ATTTCAATTGCACCATACAGGAATTAAAAC	AAGCCCGAACGGTAGCACTGCCCGAAGCCCGAACG	2167399
2167400	ATTTCAATTGCACCATACAGGAATTAAAAC	CTAACAACCTCTTTTCCATCATGGGGGTTTATTAAG	2167465
2167466	ATTTCAATTGCACCATACAGGAATTAAAAC	AGTTCACGCAGGTGCTCTCGAACGTGAATCAAGGGC	2167531
2167532	ATTTCAATTGCACCATACAGGAATTAAAAC	GTGTACTCCTTTGAGGAAATCCTCTCGGAGTACAAC	2167597
2167598	ATTTCAATTGCACCATACAGGAATTAAAAC	TCGGTGAAGGCGATATACAGGGTGCCTTTTATGCCC	2167663
2167664	ATTTCAATTGCACCATACAGGAATTAAAAC	GATCGGCGTAAATCGCCAGTCCGGCACGTGCTCCCC	2167729
2167730	ATTTCAATTGCACCATACAGGAATTAAAAC	CTGGATTTTTATTTTAGTACAATACACAACGGGAAGA	2167796
2167797	ATTTCAATTGCACCATACAGGAATTAAAAC	GGGCGATGCAATCAACAATCGGGGCGTCGTCCCG	2167860
2167861	ATTTCAATTGCACCATACAGGAATTAAAAC	GCCACGTCACGTCGAACATGGCTGCGGTTTGCTCGG	2167926
2167927	ATTTCAATTGCACCATACAGGAATTAAAAC	TTGAAAATTCAAAAGAACAACTAAAAGCAATTGAAG	2167992
2167993	ATTTCAATTGCACCATACAGGAATTAAAAC	AAAATACGCAAGCTCCAACAATCATCATGATGGA	2168056
2168057	ATTTCAATTGCACCATACAGGAATTAAAAC	ATCTTTAAGTCGGACGGAAGCGTTACATCTGCTGT	2168121
2168122	ATTTCAATTGCACCATACAGGAATTAAAAC	ATTAACAGCCTATTTCCCCCGTATTAGCGGATCGA	2168186
2168187	ATTTCAATTGCACCATACAGGAATTAAAAC	TTACGCACGACGACTGCAGTCTGCTTTTCGTCAC	2168250
2168251	ATTTCAATTGCACCATACAGGAATTAAAAC	CAGGGCGTCGACGGCGAGGGCTATACGCAGATTGA	2168315
2168316	ATTTCAATTGCACCATACAGGAATTAAAAC	GATAGTCCCTGTCCCTGCGACTCGATCAGCTGCTTG	2168381
2168382	ATTTCAATTGCACCATACAGGAATTAAAAT		2168411

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_9

CRISPR start position : 2219340 ---------- CRISPR end position : 2219614 ---------- CRISPR length : 274
DR consensus : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC
DR length : 46 Number of spacers : 3

2219340	CGAATCGATGCAGGACAGATTTAGTATTTTTGTTGCAACGCACAGC	TACGATGCGCTGTACAGTAGCGTAGAGGTC	2219415
2219416	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	AAACAGGAAAAAGATAGTTTTTTTCATTGC	2219491
2219492	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	AGGTATGAGATGATGGAGCTGCGCTCCTTG	2219567
2219568	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTNNNNNNNNNNNNN		2219614

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_10

CRISPR start position : 2219760 ---------- CRISPR end position : 2220034 ---------- CRISPR length : 274
DR consensus : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC
DR length : 46 Number of spacers : 3

2219760	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	GGCCGTGAAGTTTTACCTCGCCTGCGGACT	2219835
2219836	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	TGCTGTTTTGCCCCATCGGTGGTTGTTGCA	2219911
2219912	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	TCTTCGACTGATATATTATTATTCCCTTAT	2219987
2219988	ACTGGGAATAGCTTTCAGATTTAGTATTTTTNNNNNNNNNNNNNNN		2220034

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_11

CRISPR start position : 2220177 ---------- CRISPR end position : 2220985 ---------- CRISPR length : 808
DR consensus : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC
DR length : 46 Number of spacers : 9

2220177	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	GCGGCAAGGGTACGGGCATTGTCTGAACCC	2220252
2220253	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	AACGTTACCGAAGAAAGCATAGCTTCCAAC	2220328
2220329	ACTGGGAATAGCTTTCAGATTTAGTATTTTTNNNNNNNNNNNNNNN	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	2220445
2220446	NNNNNNNNNNNNNNTCAGATTTAGTATTTTTGTTGCAACGCACAGC	TTGTATTTCAGGAACTTATCGAATCTGTC	2220520
2220521	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	ATAGGCTCATTGGAAGAAGCAGCCTCCGG	2220595
2220596	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	TGCAAGGCGTACTCGACGCGGCTCTGCTT	2220670
2220671	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGNNNNNNNNNNNNNN	NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN	2220787
2220788	NNNNNNNNNNNNNNNCAGATTTAGTATTTTTGTTGCAACGCACAGC	TTTGATGCTAATCCAGCAAACTTACGCACT	2220863
2220864	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC	TTTTCAAAGGGATGTGCTGGGGAAAATGTA	2220939
2220940	ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC		2220985

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_1

CRISPR start position : 112775 ---------- CRISPR end position : 112908 ---------- CRISPR length : 133
DR consensus : GGGGTTATACTATAAAGGGTGGAGACTTTTAAGTATAAAGT
DR length : 41 Number of spacers : 1

112775	GAGGTAATACTATAAAGCCCTGAGGGGTTATACTATAAAGG	GTGGAGACTTTTAAGTATAAAGTATGGAGACTTGATACTATAAAGTCATGGG	112867
112868	GGGGTTATACTATAAAGGGTGGAGGCTTTTAAGTATAAAGT		112908

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_4

CRISPR start position : 745429 ---------- CRISPR end position : 745524 ---------- CRISPR length : 95
DR consensus : GCTTTGATCTCAACATTGTTCTTCGCTCTT
DR length : 30 Number of spacers : 1

745429	GCTTTGATCTCAACATTGTTCTTCGCTCTT	TGCCACCTCGGGTTCGAAAAACAAGGCCGGCCTGAA	745494
745495	GCTTTGATCTCAACATTGTTCTTCGCTCTT		745524

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_5

CRISPR start position : 1712513 ---------- CRISPR end position : 1712660 ---------- CRISPR length : 147
DR consensus : CTTAGCTCAGTCGGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTC
DR length : 52 Number of spacers : 1

1712513	CTTAGCTCAGTCGGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTC	GAGCCCAAGAGAAAGCGCTCTCACAAGCCGTTTTTCTATTCTTC	1712608
1712609	CTTAGCTCAGTTGGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTC		1712660

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_6

CRISPR start position : 2164421 ---------- CRISPR end position : 2164517 ---------- CRISPR length : 96
DR consensus : AGGGGAAATTGATCCATGAGACAACCTACCC
DR length : 31 Number of spacers : 1

2164421	AGGGGAAATTGATCCATGAGACAACCTACCC	TCCGGTCTGCGCTTAATTGAGCTCGCATTTCCGAA	2164486
2164487	AGGGGAAATTGATCCATGAGACAACCTACCC		2164517

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_12

CRISPR start position : 2292291 ---------- CRISPR end position : 2292386 ---------- CRISPR length : 95
DR consensus : CTTAGAAAAATAATCTTGTACATCCATAAC
DR length : 30 Number of spacers : 1

2292291	CTTAGAAAAATAATCTTGTACATCCATAAC	ACTGTTCGGGACTGAAGGTGCCTGTTTCTCCTTGGG	2292356
2292357	CTTAGAAAAATAATCTTGTACATCCATAAC		2292386

Display spacers	Crispr Properties