CRISPRs found in the submitted sequence(s)

Sequence: F0570

Sequence description :
Length (bp): 2282791

Number of CRISPRs candidates = 6
Confirmed CRISPRs = 3	Questionable CRISPRs = 3
F0570_Crispr_3 F0570_Crispr_5 F0570_Crispr_6	F0570_PossibleCrispr_1 F0570_PossibleCrispr_2 F0570_PossibleCrispr_4
CRISPRs candidates localization

Rebuild a CRISPR, modify the DR sequence

Confirmed CRISPRs (3)

CRISPR id : tmp_1_Crispr_3

CRISPR start position : 1118012 ---------- CRISPR end position : 1118246 ---------- CRISPR length : 234
DR consensus : GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACA
DR length : 37 Number of spacers : 3

1118012	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACA	CAAATAAAAAAAAATTATTATGAAGAGTT	1118077
1118078	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACA	GAAAGCAAAACTTCAATTCCGGGAATAGA	1118143
1118144	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACA	TCAATCGTAGGAATTATGATTAAGGCCGG	1118209
1118210	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAACC		1118246

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_5

CRISPR start position : 1781235 ---------- CRISPR end position : 1781595 ---------- CRISPR length : 360
DR consensus : GTTTTAATTCCTGTATGGTGCAATTGAAAT
DR length : 30 Number of spacers : 5

1781235	NTTTTAATTCCTGTATGGTGCAATTGAAAT	CGATTGCGATTGCCCCGATTGCGCGGGGCGTCGAA	1781299
1781300	GTTTTAATTCCTGTATGGTGCAATTGAAAT	CCGCTCGCGAGAAGTCATTACTGGGTTTCTTCCGATT	1781366
1781367	GTTTTAATTCCTGTATGGTGCAATTGAAAT	CTGGGCTATCTGTGAGTTATGAGAGGCAATAAACTGC	1781433
1781434	GTTTTAATTCCTGTATGGTGCAATTGAAAT	CACCCTCGCGGCTATTCCCGCCCGCGCGAACTTGTC	1781499
1781500	GTTTTAATTCCTGTATGGTGCAATTGAAAT	AGAGCTGCCCGAGGCGGGCGTTTCGCTGATCGAGTT	1781565
1781566	GTTTTAATTCCTGTATGGTGCAATTGAAAT		1781595

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_6

CRISPR start position : 2014057 ---------- CRISPR end position : 2014620 ---------- CRISPR length : 563
DR consensus : GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC
DR length : 36 Number of spacers : 8

2014057	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	GGGCTTCTTTATCATCACTTGCCATAAGAT	2014122
2014123	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	TACGCTATACTCTGTATGAGTTGCTGAGTT	2014188
2014189	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	GATAAGGGCTTAGTTTCTTATTAATTAGTT	2014254
2014255	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	AGTCGATTAGCTCGTCCGCCGACACGTCTT	2014320
2014321	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	ACTTTCTGCTTTGATATGAACTTTCCTGTG	2014386
2014387	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	ATTCTATCTTTAGTACTTTTAGTAATTACT	2014452
2014453	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	TACAAAGGTTTGTTCAAGGAATGTGCTACC	2014518
2014519	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	AAAAACCTGCGCTTTATAATCTGGAAATTC	2014584
2014585	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC		2014620

Display spacers	Crispr Properties

Questionable [*] CRISPRs ( 3 )

CRISPR id : tmp_1_PossibleCrispr_1

CRISPR start position : 287841 ---------- CRISPR end position : 287938 ---------- CRISPR length : 97
DR consensus : GGAGGACAAGCGTGGCTTGCTCGACCGTTACC
DR length : 32 Number of spacers : 1

287841	GGAGGACAAGCGTGGCTTGCTCGACCGTTACC	ATTGGGTGCATTTGCCGTATGATTTTCTGGCCAA	287906
287907	GGAGGACAAGCGTGGCTTGCTCGACCGTTACC		287938

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_2

CRISPR start position : 719291 ---------- CRISPR end position : 719381 ---------- CRISPR length : 90
DR consensus : ATAACCAAATCAGTAAGCTTGAGGG
DR length : 25 Number of spacers : 1

719291	ATAACCAAATCAGTAAGCTTGAGGG	CTTGGATGGTCTCACCTCCTTAACCGGGCTTTCTCTAAGGA	719356
719357	ATAACCAAATCAGTAAGCTTGAGGG		719381

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_4

CRISPR start position : 1780975 ---------- CRISPR end position : 1781135 ---------- CRISPR length : 160
DR consensus : GTTTTAATTCCTGTATGGTGCAATTGAAAT
DR length : 30 Number of spacers : 2

1780975	ATTTTAATTCCTGTATGGTGCAATTGAAAT	CGAATGGAAGACCGAGGGGAACCTGTTGTCGAACG	1781039
1781040	GTTTTAATTCCTGTATGGTGCAATTGAAAT	AAGTAATCTTGAGGCAGGGAGTTGGAGACTTGTCT	1781104
1781105	GTTTTAATTCCTGTATGGTGCAATTGAAAT		1781135

Display spacers	Crispr Properties

[*]There are two kinds of "questionable" CRISPRs:

Small CRISPRs, i.e structures having only two or three DRs
Structures where the repeated motifs (DR in CRISPR) are not 100% identical.