CRISPRs found in the submitted sequence(s)

Sequence: JCVI_SC001

Sequence description :
Length (bp): 2426396

Number of CRISPRs candidates = 6
Confirmed CRISPRs = 3	Questionable CRISPRs = 3
JCVI_SC001_Crispr_3 JCVI_SC001_Crispr_4 JCVI_SC001_Crispr_5	JCVI_SC001_PossibleCrispr_1 JCVI_SC001_PossibleCrispr_2 JCVI_SC001_PossibleCrispr_6
CRISPRs candidates localization

Rebuild a CRISPR, modify the DR sequence

Confirmed CRISPRs (3)

CRISPR id : tmp_1_Crispr_3

CRISPR start position : 158860 ---------- CRISPR end position : 159088 ---------- CRISPR length : 228
DR consensus : CAGACCCTCAAGCTTAGCGATTTGGTTACCC
DR length : 31 Number of spacers : 3

158860	CAGACCCTCAAGCTTAGCGATTTGGTTACCC	CTTAGATCAAGCCTTGTTAAGGAGGTGAGAGCATT	158925
158926	CAGACCCTCAAGCTTAGCGATTTGGTTACCC	GACAGATAAAGCTCCGTTAAGGACGTGAGACGTTC	158991
158992	CAGACCCTCTAGTTTACTGATTTGGTTATCC	AAAAGATAAAGCTCCGCTAACGAGGTGAGACGTTC	159057
159058	CAGACCCTCAAGCTTACTGATTCGGTTATGC		159088

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_4

CRISPR start position : 1459611 ---------- CRISPR end position : 1459976 ---------- CRISPR length : 365
DR consensus : GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC
DR length : 36 Number of spacers : 5

1459611	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	TAGCTTCAGCGAAGCTTGAATCGCTCATCA	1459676
1459677	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	GTACACCTTGTTCGGGCGGCCGCCCGCCTC	1459742
1459743	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	TTCATCGTAGTTATTAGTAGGGTCAAAGTA	1459808
1459809	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	AGGGGACACCCCTCAAGAAGTGGAGACGTT	1459874
1459875	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC	CCATCCTACATCAAGCTGTTTACGTAGTCT	1459940
1459941	GTTGGATCTACCCTCTATTCGAAGGGTACACACAAC		1459976

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_5

CRISPR start position : 1819127 ---------- CRISPR end position : 1819476 ---------- CRISPR length : 349
DR consensus : GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT
DR length : 46 Number of spacers : 4

1819127	GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT	AAAGCTCTCCCTATTGAAGAGCAGCTATGA	1819202
1819203	GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT	AGCGAACGGGACGGCATTTTCGCAGGCAGC	1819278
1819279	GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT	GTTGGTTAGTAGCACAGTTTCTGTGCTACT	1819354
1819355	GCTGTGCGTTGCAACAAAAATACTAAATCTGAAAGCTATTCCCAGT	GGTGATGTTATTGAATTAGATGGAATAAAA	1819430
1819431	GCTGTGCGTTGCAACAACATTACTAAATCTGAAAGTTATTCCAAGT		1819476

Display spacers	Crispr Properties

Questionable [*] CRISPRs ( 3 )

CRISPR id : tmp_1_PossibleCrispr_1

CRISPR start position : 14704 ---------- CRISPR end position : 14851 ---------- CRISPR length : 147
DR consensus : GAACCAAGGACCCTCTGATTAACAGTCAGATGCTCTAACCAACTGAGCTAAG
DR length : 52 Number of spacers : 1

14704	GAACCAAGGACCCTCTGATTAACAGTCAGATGCTCTAACCAACTGAGCTAAG	GAAGAATAGAAAAACGGCTTGTGAGAGCGCTTTCTCTTGGGCTC	14799
14800	GAACCAAGGACCCTCTGATTAACAGTCAGATGCTCTAACCGACTGAGCTAAG		14851

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_2

CRISPR start position : 158592 ---------- CRISPR end position : 158689 ---------- CRISPR length : 97
DR consensus : CAGACCCTCAAGCTTAGCGATTTGGTTACCC
DR length : 31 Number of spacers : 1

158592	TAATCCCTCAAGCTTGCTGATTTGGTTACCC	GATAGATCAAGCCTTGTTAAGGACGTGAGAGCATT	158657
158658	CAGACCCTCAAGCTTAGCGATTTGGTTACCC		158689

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_6

CRISPR start position : 2029152 ---------- CRISPR end position : 2029254 ---------- CRISPR length : 102
DR consensus : TTGCTTTCATGGCAGCGATTTGAGCCGAGTCGGG
DR length : 34 Number of spacers : 1

2029152	TTGCTTTCATGGCAGCGATTTGAGCCGAGTCGGG	ACCCTTTCCTCCATTTGCTTTCATCTTTGCCGCCG	2029220
2029221	TTGCTTTCATGGCAGCGATTTGAGCCGAGTCGGG		2029254

Display spacers	Crispr Properties

[*]There are two kinds of "questionable" CRISPRs:

Small CRISPRs, i.e structures having only two or three DRs
Structures where the repeated motifs (DR in CRISPR) are not 100% identical.