CRISPRs found in the submitted sequence(s)

Sequence: W4087

Sequence description :
Length (bp): 2216597

Number of CRISPRs candidates = 9
Confirmed CRISPRs = 4	Questionable CRISPRs = 5
W4087_Crispr_2 W4087_Crispr_4 W4087_Crispr_6 W4087_Crispr_8	W4087_PossibleCrispr_1 W4087_PossibleCrispr_3 W4087_PossibleCrispr_5 W4087_PossibleCrispr_7 W4087_PossibleCrispr_9
CRISPRs candidates localization

Rebuild a CRISPR, modify the DR sequence

Confirmed CRISPRs (4)

CRISPR id : tmp_1_Crispr_2

CRISPR start position : 404316 ---------- CRISPR end position : 405532 ---------- CRISPR length : 1216
DR consensus : ATTTCAATTGCACCATACAGGAATTAAAAT
DR length : 30 Number of spacers : 18

404316	ATTTCAATTGCACCATACAGGAATTAAAAT	GAATATCTGCAGTAGGAATCCCCTGGGGTGCAGTTGT	404382
404383	ATTTCAATTGCACCATACAGGAATTAAAAT	TCACTCCTTATAGGAGACTTTATGGACTTCGCCC	404446
404447	ATTTCAATTGCACCATACAGGAATTAAAAT	GATAGGGCACAAGCTGGCAGAGCAGCAGACCCAACA	404512
404513	ATTTCAATTGCACCATACAGGAATTAAAAT	AAAAAGAATACAACAAGCGGATGGACGAGCTTAACC	404578
404579	ATTTCAATTGCACCATACAGGAATTAAAAT	ATAGTCTGCTGAAAATTATTTTGGACATAACACATG	404644
404645	ATTTCAATTGCACCATACAGGAATTAAAAT	TAGCAAAAGTGTAAACTGCCCATTGAAGTCGGATGT	404710
404711	ATTTCAATTGCACCATACAGGAATTAAAAT	GCATGGTACCGAACAGGGCAGACATACACCACTC	404774
404775	ATTTCAATTGCACCATACAGGAATTAAAAT	CTACGGACAGGGCCGTTCCGCCTACGAGGCGGATGC	404840
404841	ATTTCAATTGCACCATACAGGAATTAAAAT	CAGAGGCGCGCATGTCCGTGCGCCAGCCGATATCTC	404906
404907	ATTTCAATTGCACCATACAGGAATTAAAAT	ACGGTGGAATAGTCGGTGGTATGAGTTACCACGGGG	404972
404973	ATTTCAATTGCACCATACAGGAATTAAAAT	AGGGCATAAAGGTTAGAGGGGGGTTATGTATCACAC	405038
405039	ATTTCAATTGCACCATACAGGAATTAAAAT	AAGCAGGCTATTCGTGGAAGTGGGTGGAAGAAAGCC	405104
405105	ATTTCAATTGCACCATACAGGAATTAAAAT	TCTACTGCCCCCTGAAGGGCCGCTATTTGGGCAAG	405169
405170	ATTTCAATTGCACCATACAGGAATTAAAAT	ACAACAACTTACGAGAAAAACGTACGAAAAAAATAG	405235
405236	ATTTCAATTGCACCATACAGGAATTAAAAT	CGGGTTATTGGGGTCGAATATGCCCGGGGCGTCGGGG	405302
405303	ATTTCAATTGCACCATACAGGAATTAAAAT	GTCGGTCAGCTCTATAAACTTGTTTTGAAGACGGC	405367
405368	ATTTCAATTGCACCATACAGGAATTAAAAT	ATGTTTGCTGGTCTGCATTAGCAGCGAGAGACAGCGT	405434
405435	ATTTCAATTGCACCATACAGGAATTAAAAT	ATGTCATCTTTTGCGTTCGGTCGATGTCGGTCAGGCGA	405502
405503	ATTTCAATTGCACCATACAGGAATTAAAAT		405532

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_4

CRISPR start position : 1049834 ---------- CRISPR end position : 1050264 ---------- CRISPR length : 430
DR consensus : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC
DR length : 36 Number of spacers : 6

1049834	NNNGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	AGCGTAGTAGGCATCTTCCCGCTCCGCTCC	1049899
1049900	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	AAAAGGTAGAAAAAGAATATCTGTTTGAAC	1049965
1049966	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	TAAATAAAAGAAATATAGATTATAACTACT	1050031
1050032	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	AAGAGATTATATCAAATAACTAAGTCATCT	1050097
1050098	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	CACAATGATATTCGAACTCTCAACGAACAA	1050163
1050164	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC	ACATTGATAATCTTGTTATTGACGTGTAT	1050228
1050229	GTTGTGTGTACCCTTCGAATAGAGGGTAGATCNNNN		1050264

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_6

CRISPR start position : 1603749 ---------- CRISPR end position : 1603983 ---------- CRISPR length : 234
DR consensus : GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC
DR length : 36 Number of spacers : 3

1603749	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CTCTTCCGTGTAATAGGTCCGGATGGTTAT	1603814
1603815	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TCAGACAAGTACAACAAACTACCAATATGT	1603880
1603881	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	TCATAATCATCGCTGTTCTACTTGCATATA	1603946
1603947	GTTGTCTCCACCCTTCTAACTAAGGGTATTCNNNNN		1603983

Display spacers	Crispr Properties

CRISPR id : tmp_1_Crispr_8

CRISPR start position : 1604453 ---------- CRISPR end position : 1604753 ---------- CRISPR length : 300
DR consensus : GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC
DR length : 36 Number of spacers : 4

1604453	TATATCGAACTCACATTAACTAAGGGTATTCCCAAC	AATGCGATAACCGAGCAAAAGACGAAATGA	1604518
1604519	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CATTGCTCATGACTATCTAAACCCTCGTAA	1604584
1604585	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CAAGAGGAATTTCATTCCATTTCTGTCTTT	1604650
1604651	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CAACCCCTAATCACAGATAAAGCCTTTGAT	1604716
1604717	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCNNNN		1604753

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_5

CRISPR start position : 1154667 ---------- CRISPR end position : 1154817 ---------- CRISPR length : 150
DR consensus : GGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTCGAGCCCAAGAGAAAG
DR length : 55 Number of spacers : 1

1154667	GGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTCGAGCCCAAGAGAAAG	CGCTGTCACAAGCCGTTTTTCTATTCTTCCTTAGCTCAGTT	1154762
1154763	GGTTAGAGCATCTGACTGTTAATCAGAGGGTCCTTGGTTCGAGCCCAAGAGAAAG		1154817

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_7

CRISPR start position : 1604074 ---------- CRISPR end position : 1604243 ---------- CRISPR length : 169
DR consensus : GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC
DR length : 36 Number of spacers : 2

1604074	NNNNTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CGTAGCCCCTTGGAAACGTTTCGAAATACAG	1604140
1604141	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	CAACGACCTGTGGGATAGCTTTGGATCTCC	1604206
1604207	GTTGTCTCCACCCTTCTAACTAAACGCCAGTTCGAT		1604243

Display spacers	Crispr Properties

CRISPR id : tmp_1_PossibleCrispr_9

CRISPR start position : 1604846 ---------- CRISPR end position : 1605012 ---------- CRISPR length : 166
DR consensus : GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC
DR length : 36 Number of spacers : 2

1604846	NNNGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	GGGATCATTTTATATCCGAATTGGATCTT	1604910
1604911	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC	GACAAAAACGGCAAGGAAATATACGAGGGG	1604976
1604977	GTTGTCTCCACCCTTCTAACTAAGGGTATTCCCAAC		1605012

Display spacers	Crispr Properties

297786	AAAAAGAAGAAGAGAGAGGAGGAGAGCC	ATACAGGAATTAAAACTATAGAAGTCTTCATCCAGTAT	297851
297852	AAAAAGAAGAAGAGAGAGGAGGAGAGCC		297879

869029	AGCTTCCTCCGAACGAGTATCCTCTCGATCT	ATACCTCTCTCTTGCTCCTGCTCCATCCAGTCC	869092
869093	AGCTTCGTCCGAACGAGTATCCTCTCGATCT		869123