format_input.py lefse_L7.txt lefse_results/lefse.in -f c -c 2 -u 1 -o 1000000
run_lefse.py lefse_results/lefse.in lefse_results/lefse.res > lefse_results/run_lefse.log
plot_res.py lefse_results/lefse.res lefse_results/lefse.plot.png --format png --title 'Significantly Represented Taxa'
plot_res.py lefse_results/lefse.res lefse_results/lefse.plot.svg --format svg --title 'Significantly Represented Taxa'
plot_res.py lefse_results/lefse.res lefse_results/lefse.plot.pdf --format pdf --title 'Significantly Represented Taxa'
plot_cladogram.py lefse_results/lefse.res lefse_results/lefse.cladogram.species.png --format png --title 'Significantly Represented Taxa'
plot_cladogram.py lefse_results/lefse.res lefse_results/lefse.cladogram.species.svg --format svg --title 'Significantly Represented Taxa'
plot_cladogram.py lefse_results/lefse.res lefse_results/lefse.cladogram.species.pdf --format pdf --title 'Significantly Represented Taxa'
plot_cladogram.py lefse_results/lefse.res lefse_results/lefse.cladogram.genus.png --max_lev 6 --format png --title 'Significantly Represented Taxa'
plot_cladogram.py lefse_results/lefse.res lefse_results/lefse.cladogram.genus.svg --max_lev 6 --format svg --title 'Significantly Represented Taxa'
plot_cladogram.py lefse_results/lefse.res lefse_results/lefse.cladogram.genus.pdf --max_lev 6 --format pdf --title 'Significantly Represented Taxa'
plot_features.py lefse_results/lefse.in lefse_results/lefse.res lefse_results/all_diff_features/ -f diff --format png
plot_features.py lefse_results/lefse.in lefse_results/lefse.res lefse_results/all_diff_features/ -f diff --format svg
plot_features.py lefse_results/lefse.in lefse_results/lefse.res lefse_results/all_diff_features/ -f diff --format pdf
